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allaun
41fcbc3daa
BioSight encodes mathematical equations as 30-base hachimoji DNA sequences for Adleman/Lipton-style DNA computing. 4-layer Φ mapping: Layer 1: F(E) — byte-class histogram on Δ₇ Layer 3: τ(E) + δ(E) — parse tree structure Layer 4: 6 consistency rules → allele-specific PCR pass/fail Independent phi/ modules: charclass, ast_parse, consistency, embed, output Build: python3 -m py_compile — all modules clean
43 lines
1.1 KiB
Python
43 lines
1.1 KiB
Python
#!/usr/bin/env python3
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"""
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equation_dna_encoder.py — SilverSight Φ Encoder CLI
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Thin CLI wrapper around the phi package modules.
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Usage:
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echo 'd_F(p,q) = 2*arccos(sum(sqrt(p_i*q_i)))' | python equation_dna_encoder.py
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python equation_dna_encoder.py 'E(x) = x^T Q x'
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"""
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from __future__ import annotations
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import sys
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from phi import encode_phi, to_fastq
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def main():
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if len(sys.argv) > 1:
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equations = [" ".join(sys.argv[1:])]
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else:
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equations = [line.strip() for line in sys.stdin if line.strip()]
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for eq in equations:
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result = encode_phi(eq)
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if result is None:
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print(f"FAIL: could not parse: {eq!r}", file=sys.stderr)
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continue
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print(f"# Equation: {result['equation']}")
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print(f"# DNA: {result['dna_sequence']} ({result['length']} bases)")
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print(f"# PASS: {result['consistency_pass']}")
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print(f"# Hash: {result['sha256_prefix']}")
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print(f"# F: {result['F']}")
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print(f"# τ: {result['tau']}")
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print(f"# δ: {result['delta']}")
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print(f"# FASTQ: {to_fastq(result).rstrip()}")
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print()
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if __name__ == "__main__":
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main()
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