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allaun
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BioSight encodes mathematical equations as 30-base hachimoji DNA sequences for Adleman/Lipton-style DNA computing. 4-layer Φ mapping: Layer 1: F(E) — byte-class histogram on Δ₇ Layer 3: τ(E) + δ(E) — parse tree structure Layer 4: 6 consistency rules → allele-specific PCR pass/fail Independent phi/ modules: charclass, ast_parse, consistency, embed, output Build: python3 -m py_compile — all modules clean
22 lines
841 B
Python
22 lines
841 B
Python
"""
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phi — SilverSight Equation-to-DNA Φ Encoding Pipeline
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Independent modules, each reusable without the others:
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charclass Layer 1: 8-class byte histogram → Δ₇
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ast_parse Layer 3: AST parsing → τ and δ distributions
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consistency Layer 4: 6 consistency rules → ADMIT/QUARANTINE
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embed Core Φ: (F, τ, δ) → 30-base hachimoji DNA sequence
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output FASTQ, Adleman graph, PCR primer protocol
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Usage:
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from phi import encode_phi
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result = encode_phi("d_F(p,q) = 2*arccos(sum(sqrt(p_i*q_i)))")
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print(result["dna_sequence"])
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"""
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from .embed import encode_phi
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from .output import to_fastq, to_adleman_graph, design_filtering_protocol, PRIMER_DESIGN
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from .charclass import compute_F
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from .ast_parse import compute_tau, compute_delta
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from .consistency import check_consistency, CONSISTENCY_RULES
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