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BioSight/python
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allaun e0b2283972 feat(phi): full docstring + verification hardening pass 
Every function in all 5 phi modules now has:
- Google-style docstring with Args/Returns/Examples
- Verified behavior via doctest examples (46 total)
- Self-verification assertion blocks on direct execution

Verification results:
  charclass: 10 doctests, 16 assertions  — PASS
  ast_parse: 21 doctests, 7 assertions   — PASS
  consistency: 6 assertions               — PASS
  embed: multiple assertions              — PASS
  output: 15 doctests, 16 assertions      — PASS
  CLI wrapper: 3 checks                   — PASS
  End-to-end: 9 equation domains          — PASS

Also added:
- .opencode/opencode.jsonc (gemma4 MCP config)
- phi/AGENTS.md (module-level contract)
- phi/test_phi.py (unittest test file)
- phi/encoding_rationale.md (design docs)
- dag/ (project dependency graph)
- harness/ (Lean formalism constraints)
- 7-Pipeline/ (rigour verification harness)

Build: python3 -W error -m py_compile — 0 warnings
2026-06-24 03:57:50 -05:00
..
7-Pipeline feat(phi): full docstring + verification hardening pass 2026-06-24 03:57:50 -05:00
phi feat(phi): full docstring + verification hardening pass 2026-06-24 03:57:50 -05:00
equation_dna_encoder.py feat(phi): full docstring + verification hardening pass 2026-06-24 03:57:50 -05:00
pyproject.toml feat(init): initial BioSight commit — equation-to-DNA Φ encoding 2026-06-23 18:27:35 -05:00