diff --git a/6-Documentation/docs/biology/BioPhonon_Translation_Field_Equations.md b/6-Documentation/docs/biology/BioPhonon_Translation_Field_Equations.md new file mode 100644 index 00000000..d637c797 --- /dev/null +++ b/6-Documentation/docs/biology/BioPhonon_Translation_Field_Equations.md @@ -0,0 +1,313 @@ +# BioPhonon Translation Field Equations + +Status: EQUATION_UPDATE +Claim state: FORMAL_SCAFFOLD / ANALOGY_BOUNDED + +This note defines the BioPhonon Translation Field: the class of evolved systems that convert mechanical wave propagation into actionable meaning. It includes percussive foragers, web/modal graph sensors, substrate vibration insects, seismic mammals, aquatic lateral-line systems, echolocators, and plant stress-ultrasound emission. + +Boundary: this is not proof that plants have subjective experience or intentional speech. The plant-stress sound source is treated as an informative biomechanical emission term in a broader phonon-mediated translation equation. + +--- + +## 1. Base BioPhonon field + +Universal medium equation: + +```math +\mathcal{M}\ddot{u} ++ +\mathcal{C}\dot{u} ++ +\mathcal{K}u ++ +\mathcal{N}(u,\nabla u) += +S_a(x,t) ++ +S_w(x,t) ++ +N(x,t) +``` + +Observation equation: + +```math +y_i(t) += +\mathcal{R}_i[u(x_i,t)] ++ +\eta_i(t) +``` + +Translation equation: + +```math +P(z\mid y_{1:n},a) +\propto +P(y_{1:n}\mid z,a)P(z) +``` + +Action policy: + +```math +a^* += +\arg\max_a +\frac{ +I(z;y_{1:n}\mid a) +}{ +E_{act}(a)+E_{move}(a)+C_{compute}(a)+C_{risk}(a) +} +``` + +--- + +## 2. Plant-stress ultrasonic emission term + +The plant-stress source term adds an emitter that is not a moving animal sensor, but a biomechanical state-to-sound translator. + +```math +S_w(x,t) +\rightarrow +S_{world}(x,t) ++ +S_{plant}(x,t;\sigma_h,w,i,\chi) +``` + +where: + +```text +σ_h = hydraulic / xylem tension stress +w = water deficit / dehydration state +i = injury or cutting state +χ = species / tissue / morphology parameters +``` + +The plant emission source can be modeled as a sparse ultrasonic pulse train: + +```math +S_{plant}(x,t) += +\sum_k +A_k(\sigma_h,w,i,\chi) +\,g(t-t_k;f_k,Q_k) +\,\delta(x-x_{plant}) +``` + +with event rate: + +```math +\lambda_{plant}(t) += +\lambda_0 ++ +\lambda_w\,\Phi_w(w(t)) ++ +\lambda_i\,\Phi_i(i(t)) ++ +\lambda_h\,\Phi_h(\sigma_h(t)). +``` + +Interpretation: + +```text +Plant state -> ultrasonic event statistics -> receiver inference. +``` + +--- + +## 3. Cavitation-compatible source hypothesis + +A conservative biomechanical source model treats plant sounds as cavitation-compatible xylem events rather than intentional vocalization: + +```math +\sigma_h(t) > \sigma_{cav} +\Rightarrow +\Delta P_{xylem}(t) +\Rightarrow +S_{plant}(t). +``` + +One possible event kernel: + +```math +g(t;f,Q) += +H(t)e^{-\pi f t/Q}\sin(2\pi f t). +``` + +This keeps the plant term compatible with mechanical emission: + +```text +hydraulic stress / injury -> elastic release / cavitation-like pulse -> airborne ultrasound. +``` + +--- + +## 4. Receiver inference: who listens? + +For any receiver organism r: + +```math +y_r(t) += +\mathcal{H}_{air,plant\to r}[S_{plant}](t)+\eta_r(t) +``` + +and: + +```math +P(z_{plant}\mid y_r) +\propto +P(y_r\mid z_{plant})P(z_{plant}). +``` + +Receiver action: + +```math +a_r^* += +\arg\max_{a_r} +\frac{ +I(z_{plant};y_r\mid a_r) +}{ +E_{move}(a_r)+C_{compute}(a_r)+C_{risk}(a_r) +}. +``` + +Examples: + +```text +moth: avoid oviposition on stressed host plant +bat/mouse/insect: detect ultrasonic environmental state +neighbor plant: possible stress preconditioning route, currently research-bound +farmer sensor: irrigation / stress monitoring +``` + +--- + +## 5. Updated universal BioPhonon translation equation + +With plant-stress ultrasound included: + +```math +\boxed{ +\mathcal{M}\ddot{u} ++ +\mathcal{C}\dot{u} ++ +\mathcal{K}u ++ +\mathcal{N}(u,\nabla u) += +S_{self}(x,t) ++ +S_{prey}(x,t) ++ +S_{mate}(x,t) ++ +S_{predator}(x,t) ++ +S_{plant}(x,t) ++ +N_{env}(x,t) +} +``` + +Observation: + +```math +\boxed{ +y_i(t) += +\mathcal{R}_i[u(x_i,t)] ++ +\eta_i(t) +} +``` + +Translation: + +```math +\boxed{ +P(z\mid y_{1:n},a) +\propto +P(y_{1:n}\mid z,a)P(z) +} +``` + +Action: + +```math +\boxed{ +a^* += +\arg\max_a +\frac{ +I(z;y_{1:n}\mid a) +}{ +E_{act}(a)+E_{move}(a)+C_{compute}(a)+C_{risk}(a)+L_{FAMM}(a) +} +} +``` + +--- + +## 6. Stack translation + +Plant-stress ultrasound adds a new category: passive biomechanical source emission. + +```text +not only: active probe -> response -> meaning +also: internal stress -> emitted phonon signature -> external listener inference +``` + +Compression analogy: + +```text +internal state strain -> sparse acoustic/phonon events -> classifier route -> FAMM scar/update +``` + +So the compression/semantic equivalent is: + +```math +route^* += +\arg\max_{probe/listen} +\frac{ +I(hidden\_state;response\mid probe/listen) +}{ +C_{probe}+C_{listen}+C_{decode}+C_{interface}+C_{risk}+L_{FAMM} +}. +``` + +--- + +## 7. Warden boundary + +Allowed: + +```text +Use plant-stress sounds as a biomechanical ultrasonic source term. +Use the term to expand BioPhonon translation to include passive stress emissions. +Use classifier/inference framing for animal, plant, or engineered receivers. +``` + +Blocked: + +```text +Do not claim plants intentionally scream. +Do not claim plant sentience or pain from ultrasonic emissions. +Do not claim plant-to-animal communication unless receiver behavior is empirically shown. +Do not promote BioPhonon claims outside the measured stress-sound/source-receiver boundary. +``` + +--- + +## 8. Source anchor + +Primary source: + +```text +Khait et al. 2023. Sounds emitted by plants under stress are airborne and informative. Cell 186(7):1328-1336.e10. DOI: 10.1016/j.cell.2023.03.009 +```