ene-session-sync: fix compile errors, add Cargo.lock, delete lean_unified_shim

- Add rusqlite::OptionalExtension import to ene_core.rs (fixes 3 .optional() errors)
- Fix borrow conflict in compression.rs DeltaGclService::compress_manifest
  (split previous.is_some() out before mutable insert)
- Fix serde_json Map::get type error in compression.rs (use .as_str())
- Fix tokio::process::Child moved-after-use in misc.rs (capture child.id() before
  wait_with_output consumes child; use system kill for timeout case)
- Fix misc.rs S3CIterativeImprover field names (emit/j_score.total/handles.handle_a)
- Fix wiki.rs stmt lifetime error (bind collect result to named variable)
- Add Cargo.lock (new dep resolution for sha2, base64, hex, aes-gcm)
- Delete lean_unified_shim.py (minimal SwarmAPISystem shim — replaced by Rust)

Build: cargo build passes with 0 errors (8 dead-code warnings only).

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>

4-Infrastructure/infra/ene-session-sync/src/compression.rs

@@ -327,13 +327,17 @@ impl DeltaGclService {
         manifest_id: &str,
         use_delta: bool,
     ) -> CompressionResult {
-        let previous = if use_delta {
-            self.previous_manifests.get(manifest_id)
-        } else {
-            None
+        let (encoded, had_previous) = {
+            let previous = if use_delta {
+                self.previous_manifests.get(manifest_id)
+            } else {
+                None
+            };
+            let had = previous.is_some();
+            let enc = delta_gcl_encode(manifest, previous);
+            (enc, had)
         };
 
-        let encoded = delta_gcl_encode(manifest, previous);
         let original_json = serde_json::to_string(manifest).unwrap_or_default();
         let original_size = original_json.len();
         let compressed_size = encoded.len();
@@ -357,7 +361,7 @@ impl DeltaGclService {
             original_size,
             compressed_size,
             reduction_percent: reduction,
-            use_delta: previous.is_some(),
+            use_delta: had_previous,
             verified,
             verification_error,
         }
@@ -486,7 +490,7 @@ impl AdaptiveDeltaGcl {
                 } else {
                     let changed = shared
                         .iter()
-                        .filter(|k| cur.get(*k) != prev.get(*k))
+                        .filter(|k| cur.get(k.as_str()) != prev.get(k.as_str()))
                         .count();
                     changed as f64 / shared.len() as f64
                 }

4-Infrastructure/infra/ene-session-sync/src/ene_core.rs

@@ -6,7 +6,7 @@
 use anyhow::{anyhow, Context};
 use base64::engine::general_purpose::STANDARD as B64;
 use base64::Engine as _;
-use rusqlite::{params, Connection};
+use rusqlite::{params, Connection, OptionalExtension};
 use serde::{Deserialize, Serialize};
 use sha2::{Digest, Sha256};
 use std::path::{Path, PathBuf};

4-Infrastructure/infra/ene-session-sync/src/misc.rs

@@ -15,6 +15,7 @@ use sha2::{Digest, Sha256};
 use std::collections::HashMap;
 use std::path::{Path, PathBuf};
 use std::time::{SystemTime, UNIX_EPOCH};
+use crate::s3c;
 
 // ═════════════════════════════════════════════════════════════════════════════
 // §1  TiddlyWiki ENE Bridge
@@ -510,6 +511,8 @@ impl ServoFetchAdapter {
         };
 
         let timeout = tokio::time::Duration::from_secs(task.timeout_secs.max(1));
+        // `wait_with_output` consumes child; capture id first for timeout handling.
+        let child_id = child.id();
         let output = tokio::time::timeout(timeout, child.wait_with_output()).await;
 
         let elapsed_ms = start.elapsed().as_millis() as u64;
@@ -548,8 +551,12 @@ impl ServoFetchAdapter {
                 elapsed_ms,
             },
             Err(_) => {
-                // Timeout — kill the child process best-effort.
-                let _ = child.kill().await;
+                // Timeout — best-effort kill via process id.
+                if let Some(pid) = child_id {
+                    let _ = std::process::Command::new("kill")
+                        .arg(pid.to_string())
+                        .status();
+                }
                 WebResult {
                     task_id: task.task_id.clone(),
                     success: false,
@@ -791,9 +798,9 @@ impl S3CIterativeImprover {
         let (emission_ratio, avg_j_total, throat_ratio) = if total == 0 {
             (0.0_f64, 0.0_f64, 0.0_f64)
         } else {
-            let emitted_count = states.iter().filter(|s| s.emitted).count();
-            let throat_count = states.iter().filter(|s| s.a == s.b).count();
-            let j_sum: f64 = states.iter().map(|s| s.j_total as f64).sum();
+            let emitted_count = states.iter().filter(|s| s.emit).count();
+            let throat_count = states.iter().filter(|s| s.handles.handle_a == s.handles.handle_b).count();
+            let j_sum: f64 = states.iter().map(|s| s.j_score.total as f64).sum();
 
             (
                 emitted_count as f64 / total as f64,

4-Infrastructure/infra/ene-session-sync/src/wiki.rs

@@ -673,9 +673,10 @@ impl ENEWikiLayer {
         let existing: Vec<String> = {
             let mut stmt = conn
                 .prepare("PRAGMA table_info(ene_wiki_revisions)")?;
-            stmt.query_map([], |row| row.get::<_, String>(1))?
+            let cols: Vec<String> = stmt.query_map([], |row| row.get::<_, String>(1))?
                 .filter_map(|r| r.ok())
-                .collect()
+                .collect();
+            cols
         };
         for (col, decl) in &extra_cols {
             if !existing.contains(&col.to_string()) {

4-Infrastructure/infra/lean_unified_shim.py

@@ -1,15 +0,0 @@
-"""Minimal shim for attestation scripts."""
-import sqlite3
-from pathlib import Path
-
-DB_PATH = Path("/home/allaun/Documents/Research Stack/data/math_entities.db")
-
-class SwarmAPISystem:
-    """Provides sqlite3 connection to math_entities database."""
-    def __init__(self):
-        self.conn = None
-        try:
-            self.conn = sqlite3.connect(str(DB_PATH), check_same_thread=False)
-            self.conn.row_factory = sqlite3.Row
-        except Exception:
-            self.conn = None