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https://github.com/allaunthefox/Research-Stack.git
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cleanup(ene): make obsidian shim provenance configurable and schema-complete
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parent
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commit
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1 changed files with 82 additions and 65 deletions
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@ -1,6 +1,5 @@
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#!/usr/bin/env python3
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"""
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obsidian_sync_shim.py — Bidirectional sync between Obsidian vault and JSON-L lake.
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"""obsidian_sync_shim.py — Bidirectional sync between Obsidian vault and JSON-L lake.
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Modes:
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ingest : Obsidian notes → JSON-L lake (append to lake file)
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@ -9,6 +8,13 @@ Modes:
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Requires TOPOLOGICAL_ENGINE_URL and TOPOLOGICAL_ENGINE_TOKEN in .env.
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For local Obsidian installs, set OBSIDIAN_VAULT_PATH or use --vault.
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Hardcoded node/provenance assumptions were removed:
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- provenance.node uses ENE_NODE_ID (default: obsidian_sync_shim)
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- provenance.lake_seed uses ENE_LAKE_SEED (default: obsidian_lake)
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- provenance.tailscale_ip uses ENE_TAILSCALE_IP (default: 127.0.0.1)
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NOTE: This is a legacy ingest surface; treat outputs as non-authoritative.
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"""
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import sys
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@ -25,6 +31,7 @@ from typing import Dict, List, Any, Optional
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project_root = Path(__file__).parent.parent.parent
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try:
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from dotenv import load_dotenv
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if (project_root / ".env").exists():
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load_dotenv(project_root / ".env")
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except ImportError:
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@ -36,6 +43,11 @@ sys.path.insert(0, str(project_root / "4-Infrastructure" / "infra"))
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from infra.topological_engine_client import TopologicalEngineClient
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def env_default(name: str, default: str) -> str:
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v = os.getenv(name)
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return v if v is not None and v != "" else default
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DEFAULT_VAULT_PATH = project_root / "Obdisidan connector"
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LAKE_PATH = Path(os.getenv("OBSIDIAN_LAKE_PATH", str(project_root / "data" / "obsidian_lake.jsonl")))
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LAKE_PATH.parent.mkdir(parents=True, exist_ok=True)
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@ -91,11 +103,21 @@ def _format_jsonl_entry(
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tier: str = "AUX",
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domain: str = "obsidian",
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archetype: str = "note",
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src: str = "obsidian_sync_shim"
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src: str = "obsidian_sync_shim",
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) -> Dict[str, Any]:
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"""Format a JSON-L entry for the Research Stack lake."""
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now = datetime.now(timezone.utc)
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timestamp = now.isoformat()
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node_id = env_default("ENE_NODE_ID", "obsidian_sync_shim")
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lake_seed = env_default("ENE_LAKE_SEED", "obsidian_lake")
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tailscale_ip = env_default("ENE_TAILSCALE_IP", "127.0.0.1")
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# Deterministic attestation over the minimal payload.
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attestation_hash = "sha256:" + hashlib.sha256(
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(pkg + ":" + timestamp + ":" + json.dumps(data, sort_keys=True, ensure_ascii=False)).encode("utf-8")
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).hexdigest()
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return {
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"t": now.timestamp(),
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"src": src,
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@ -107,18 +129,21 @@ def _format_jsonl_entry(
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"tier": tier,
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"domain": domain,
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"archetype": archetype,
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**data
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**data,
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},
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"bind": {
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"lawful": True,
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"cost": 65536,
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"invariant": "noteConsistency",
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"class": "informational_bind"
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"class": "informational_bind",
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},
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"provenance": {
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"node": "obsidian_sync_shim",
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"lake_seed": "obsidian_lake"
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}
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"node": node_id,
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"lake_seed": lake_seed,
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"tailscale_ip": tailscale_ip,
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"attestation_hash": attestation_hash,
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"prev_id": None,
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},
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}
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@ -129,7 +154,7 @@ def _format_jsonl_entry(
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def ingest_obsidian(
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client: TopologicalEngineClient,
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query: str = "*",
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lake_path: Path = LAKE_PATH
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lake_path: Path = LAKE_PATH,
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) -> Dict[str, Any]:
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"""Pull notes from Obsidian vault and append to JSON-L lake."""
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print("[ingest] Searching Obsidian vault...")
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@ -156,11 +181,10 @@ def ingest_obsidian(
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"links": note.get("links", []),
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"tags": note.get("tags", []),
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"modified": note.get("modified", note.get("mtime")),
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}
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},
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)
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entries.append(entry)
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# Append to lake
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with open(lake_path, "a") as f:
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for entry in entries:
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f.write(json.dumps(entry) + "\n")
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@ -172,7 +196,7 @@ def ingest_obsidian(
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def ingest_local_obsidian(
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vault_path: Path,
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query: str = "*",
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lake_path: Path = LAKE_PATH
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lake_path: Path = LAKE_PATH,
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) -> Dict[str, Any]:
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"""Pull notes from a local Obsidian vault and append to JSON-L lake."""
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if not vault_path.exists():
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@ -223,7 +247,7 @@ def ingest_local_obsidian(
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def export_to_obsidian(
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client: TopologicalEngineClient,
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lake_path: Path = LAKE_PATH,
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filter_domain: str = "obsidian"
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filter_domain: str = "obsidian",
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) -> Dict[str, Any]:
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"""Read JSON-L lake and write matching entries back to Obsidian vault."""
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if not lake_path.exists():
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@ -257,19 +281,21 @@ def export_to_obsidian(
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if not path:
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continue
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# Reconstruct a simple markdown note
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md = f"# {title}\n\n"
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md += f"> Synced from JSON-L lake at {datetime.now(timezone.utc).isoformat()}\n\n"
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md += content_preview
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if len(content_preview) >= 500:
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md += "\n\n...(truncated)"
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# Write via topological engine
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res = client.write_obsidian_note(path=path, body=md, metadata={
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"source": "research_stack_lake",
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"entry_id": entry.get("id"),
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"synced_at": datetime.now(timezone.utc).isoformat()
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})
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res = client.write_obsidian_note(
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path=path,
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body=md,
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metadata={
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"source": "research_stack_lake",
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"entry_id": entry.get("id"),
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"synced_at": datetime.now(timezone.utc).isoformat(),
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},
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)
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if "error" not in res:
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written += 1
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@ -281,7 +307,7 @@ def export_to_local_obsidian(
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vault_path: Path,
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lake_path: Path = LAKE_PATH,
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filter_domain: str = "obsidian",
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overwrite: bool = False
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overwrite: bool = False,
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) -> Dict[str, Any]:
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"""Read JSON-L lake and write matching entries into a local Obsidian vault."""
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if not lake_path.exists():
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@ -339,15 +365,8 @@ def export_to_local_obsidian(
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def sync_bidirectional(
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client: TopologicalEngineClient,
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lake_path: Path = LAKE_PATH,
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obsidian_wins: bool = True
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obsidian_wins: bool = True,
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) -> Dict[str, Any]:
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"""
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Two-way sync:
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1. Ingest current Obsidian state into lake.
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2. Export lake entries back to Obsidian (creating any missing notes).
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If obsidian_wins=True, existing Obsidian notes are not overwritten.
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"""
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print("[sync] Starting bidirectional sync...")
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ingest_res = ingest_obsidian(client, lake_path=lake_path)
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if "error" in ingest_res:
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@ -355,13 +374,11 @@ def sync_bidirectional(
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if obsidian_wins:
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print("[sync] Obsidian-wins mode: skipping overwrite of existing notes")
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# In export mode, only write notes that don't already exist
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search_res = client.search_obsidian("*")
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existing_paths = set()
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for note in search_res.get("results", search_res.get("notes", [])):
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existing_paths.add(note.get("path", note.get("file_path")))
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# Filter lake entries to only missing paths
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if lake_path.exists():
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entries = []
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with open(lake_path) as f:
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@ -387,23 +404,16 @@ def sync_bidirectional(
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written += 1
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print(f"[sync] Created {written} missing notes in Obsidian")
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return {"ingested": ingest_res["ingested"], "created": written}
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else:
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export_res = export_to_obsidian(client, lake_path=lake_path)
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return {"ingested": ingest_res["ingested"], **export_res}
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export_res = export_to_obsidian(client, lake_path=lake_path)
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return {"ingested": ingest_res["ingested"], **export_res}
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def sync_local_bidirectional(
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vault_path: Path,
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lake_path: Path = LAKE_PATH,
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obsidian_wins: bool = True
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obsidian_wins: bool = True,
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) -> Dict[str, Any]:
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"""
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Local two-way sync:
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1. Ingest current local Obsidian state into lake.
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2. Export lake entries back to the vault.
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If obsidian_wins=True, existing local notes are not overwritten.
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"""
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print("[sync:local] Starting bidirectional local sync")
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ingest_res = ingest_local_obsidian(vault_path=vault_path, lake_path=lake_path)
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if "error" in ingest_res:
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@ -424,18 +434,33 @@ def sync_local_bidirectional(
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def main():
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parser = argparse.ArgumentParser(description="Obsidian ↔ JSON-L lake sync shim")
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parser.add_argument("mode", choices=["ingest", "export", "sync"], default="sync", nargs="?",
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help="ingest=Obsidian→lake, export=lake→Obsidian, sync=both")
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parser.add_argument("--backend", choices=["auto", "local", "engine"], default="auto",
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help="local=filesystem vault, engine=topological engine, auto=engine if healthy else local")
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parser.add_argument("--vault", default=None,
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help="Local Obsidian vault path; defaults to OBSIDIAN_VAULT_PATH or ./Obdisidan connector")
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parser.add_argument(
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"mode",
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choices=["ingest", "export", "sync"],
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default="sync",
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nargs="?",
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help="ingest=Obsidian→lake, export=lake→Obsidian, sync=both",
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)
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parser.add_argument(
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"--backend",
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choices=["auto", "local", "engine"],
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default="auto",
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help="local=filesystem vault, engine=topological engine, auto=engine if healthy else local",
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)
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parser.add_argument(
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"--vault",
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default=None,
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help="Local Obsidian vault path; defaults to OBSIDIAN_VAULT_PATH or ./Obdisidan connector",
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)
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parser.add_argument("--lake", default=str(LAKE_PATH), help="Path to JSON-L lake file")
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parser.add_argument("--query", default="*", help="Obsidian search query (ingest mode)")
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parser.add_argument("--obsidian-wins", action="store_true", default=True,
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help="In sync mode, don't overwrite existing Obsidian notes")
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parser.add_argument("--lake-wins", action="store_true",
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help="In sync mode, overwrite Obsidian with lake contents")
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parser.add_argument(
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"--obsidian-wins",
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action="store_true",
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default=True,
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help="In sync mode, don't overwrite existing Obsidian notes",
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)
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parser.add_argument("--lake-wins", action="store_true", help="In sync mode, overwrite Obsidian with lake")
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args = parser.parse_args()
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lake_path = Path(args.lake)
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@ -461,17 +486,9 @@ def main():
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if args.mode == "ingest":
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result = ingest_local_obsidian(vault_path=vault_path, query=args.query, lake_path=lake_path)
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elif args.mode == "export":
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result = export_to_local_obsidian(
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vault_path=vault_path,
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lake_path=lake_path,
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overwrite=not obsidian_wins,
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)
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result = export_to_local_obsidian(vault_path=vault_path, lake_path=lake_path, overwrite=not obsidian_wins)
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else:
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result = sync_local_bidirectional(
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vault_path=vault_path,
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lake_path=lake_path,
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obsidian_wins=obsidian_wins,
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)
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result = sync_local_bidirectional(vault_path=vault_path, lake_path=lake_path, obsidian_wins=obsidian_wins)
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else:
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if args.mode == "ingest":
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result = ingest_obsidian(client, query=args.query, lake_path=lake_path)
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@ -483,9 +500,9 @@ def main():
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if "error" in result:
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print(f"Error: {result['error']}")
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sys.exit(1)
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else:
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print(f"Done: {json.dumps(result, indent=2)}")
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sys.exit(0)
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print(f"Done: {json.dumps(result, indent=2)}")
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sys.exit(0)
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if __name__ == "__main__":
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