allaun/Research-Stack
1
0
Fork 0
mirror of https://github.com/allaunthefox/Research-Stack.git synced 2026-07-31 03:05:21 +00:00
Code Issues Projects Releases Packages Wiki Activity Actions
593 commits 18 branches 0 tags 425 MiB
Commit graph

21 commits

Author SHA1 Message Date
Brandon Schneider
7c1f690e0f feat(infra): Garage 6-node RF3 cluster, Cloudflare Workers deploy, k3s node additions 
- Garage scale-out complete: 6 nodes across 6 zones with replication_factor=3
- neon-64gb: added to Garage cluster (zone netcup-arm, 93 GiB)
- steamdeck: installed Garage v2.3.0, added to cluster (zone gpu, 373 GiB)
- nixos-laptop: converted from k3s server to agent in cupfox cluster
- qfox-1: k3s agent rejoined cupfox cluster
- Cloudflare Workers: WASM trinary VM deployed at wasm-compute-edge.researchstack.workers.dev
- node-registry.json: updated with all 6 Garage nodes
- Documentation: AGENTS.md, WIKI.md, ROADMAP.md, LLM-Context.md updated
- Lake build: 3313 jobs, 0 errors

Build: 3313 jobs, 0 errors (lake build Compiler)
 2026-05-31 03:39:11 -05:00
Brandon Schneider
d9a647cb4d chore(infra): bootstrap racknerd and configure multi-node garage cluster 
- Bootstrapped microvm-racknerd node on its live Tailscale IP 100.80.39.40.
- Connected racknerd to the central QFox cluster.
- Assigned racknerd to its own vps zone with 1G capacity.
- Made garage-cluster-init.sh robust and idempotent.
- Updated comments and topology mappings.

Build: 3313 jobs, 0 errors (lake build)
 2026-05-31 02:04:32 -05:00
Brandon Schneider
5320a08105 feat(infra): integrate edge WASM and GitHub batch compute tiers 
- Update device_capability_probe.py to add BATCH and WASM tiers and fix a NameError bug on has_virtio_net.
- Build Cloudflare Workers WASM compilation and JS fetch handler in 4-Infrastructure/cloudflare/ executing trinary VM steps.
- Create GitHub Actions batch_compute.yml workflow to harvest runner minutes.
- Keep 4-Infrastructure/AGENTS.md updated with the WASM core library anchor.

Build: 3313 jobs, 0 errors (lake build)
 2026-05-30 20:08:31 -05:00
Brandon Schneider
cf907e2835 feat(infra): add QEMU graphics framebuffer packing shim and spec 
- Add qemu_framebuffer_packer.py supporting ARGB8888/RGB24 raw matrix mapping
- Implement zero-copy mmap write/read interface to /dev/fb0 with signature headers
- Document the QEMU graphics framebuffer backplane in Section 11 of spec
- Update 4-Infrastructure/AGENTS.md and walkthrough.md documentation
- Verify syntax and workspace compilation baseline status

Build: 3313 jobs, 0 errors (lake build)
 2026-05-30 19:49:25 -05:00
Brandon Schneider
6ea34fbae6 feat(infra): add GPU-specific math optimization loader for H.265 VCN/NVENC 
- Implement MathOptimizationLoad dataclass to represent GPU packing configurations
- Update probe_vcn_capabilities to resolve optimizations for NVIDIA/AMD/Intel GPUs
- Extend compute_frame_size to support yuvj420p, 10-bit YUV, and YUV444p
- Propagate optimized pixel formats into select_optimal_resolution and spec
- Update _build_ffmpeg_cmd to inject lossless/zero-latency options and HEVC/H.265 metadata SEI NAL parameters
- Update 4-Infrastructure/AGENTS.md documentation

Build: 3313 jobs, 0 errors (lake build)
 2026-05-30 19:45:09 -05:00
Brandon Schneider
61b38ca697 refactor(infra): optimize YUV420 frame packing using numpy 
- Vectorized create_yuv420_frame when numpy is available to eliminate the 500k-iteration scalar Python loop.
- Pre-filled memoryview slice buffers in the fallback path.
- Updated 4-Infrastructure/AGENTS.md to document the optimization.

Build: 3313 jobs, 0 errors (lake build)
 2026-05-30 19:32:11 -05:00
Brandon Schneider
30d8c56158 feat(infra): improve RRC Ray Layer Tagger and align registry 
Improved rrc_ray_tagger.py with prioritized source name-based variant matching, corrected NetworkRayReceipt (3 variants, 67us) and BurgersRGSolver (5 variants) shapes, fixed Hopf-Cole fallback bug using string normalization, dynamically deduced workspace root path, and quarantined phase_update due to adversarial review falsification. Registered anchor in 4-Infrastructure/AGENTS.md.

Build: 3313 jobs, 0 errors (lake build Compiler)
 2026-05-30 19:18:02 -05:00
Brandon Schneider
f63e4b5179 feat(infra): virtio-net ring as compute pipeline 
Add virtio_net_transform.py: three Class-1 computation primitives via
virtio-net TX/RX rings — zero backend code changes needed.

  1. HASH_REPORT — host writes Toeplitz RSS hash into RX header
     (virtio_net_hdr_v1_hash.hash_value return channel)
  2. TSO gso_size — host splits large buffer via TCP segmentation offload
     (spatial partition into N × gso_size chunks)
  3. MRG_RXBUF — host merges multiple RX buffers (aggregation primitive)

Structs: VirtioNetHdr (12B), VirtioNetHdrHash (20B), VringDesc (16B).
Receipt schema: virtio_transform_receipt_v1 with CRC32 witness_hash.

The copy-if filter (skip zero deltas, process non-zeros) maps directly
onto the HASH_REPORT return channel: delta=0 → hash skip, delta≠0 →
hash_as_function_of_payload. This is the ambient compute model:
any QEMU/firecracker microVM is already a computation device without
knowing it.

Build: 3313 jobs, 0 errors (lake build)
Tools: glslang, spirv-as, spirv-dis (native); tint from nixpkgs for WGSL
 2026-05-30 16:54:09 -05:00
Brandon Schneider
c64e4f15eb docs: update AGENTS.md — BraidDiatCodec shim + bridge modules 
4-Infrastructure: add braid_diat_codec.py to stack-solidification anchors
Semantics: document BraidSpherionBridge admits (IntNodeToPhaseVec linearity, receipt_correspondence)
 2026-05-30 13:30:55 -05:00
Brandon Schneider
e5fb0a5f4d chore: commit accumulated working tree changes 
Lean: update Semantics modules, add new numerics/physics data files
Hardware: update FPGA bitstreams (tangnano9k_uart_loopback)
Infra: k3s-flake tests, netcup-vps configuration, VCN compute substrate
Docs: ARCHITECTURE, specs, citation updates
 2026-05-30 00:10:02 -05:00
Brandon Schneider
066a96f03f docs(infra): update node topology with rs-vps (netcup ARM64) 2026-05-29 14:26:46 -05:00
Brandon Schneider
00e88b53a3 feat(infra): add DSP node schema and flac_dsp_node.py shim 
Any Linux node with PipeWire can act as a FLAC/DSP compute worker
via a virtual sound card — no physical audio hardware required.

- ene.dsp_nodes table: pipewire_available, virtual_soundcard_supported,
  max_sample_rate, spectral_bands, latency_target_us, fft_size, etc.
- flac_dsp_node.py: node registration, PipeWire probe, FLAC chunk FFT
  analysis (peaks, spectral centroid, RMS level), receipt logging to
  ~/.cache/flac_dsp_receipts.jsonl
- AGENTS.md: document DSP volunteer computing schema addition

Build: 0 errors (py_compile)
 2026-05-29 01:31:13 -05:00
Brandon Schneider
31b2f1f66f feat(infra): compile and SRAM-flash UART beacon with reset bypass 
Synthesized and placed-and-routed the UART beacon design on Tang Nano 9K with physical reset bypassed (rst_n_internal = 1'b1). Programmed the SRAM using openFPGALoader (CRC check: Success). Verified the physical UART blockage due to BL702 bridge firmware limitations via local probe, confirming the virtual serial route (virtual://q16-pty) as the active verification path. Updated scoped AGENTS.md files with the latest hardware status and Lean build baselines.

Build: 3313 jobs, 0 errors (lake build)
 2026-05-28 14:10:46 -05:00
Brandon Schneider
e203a5215e feat(hardware): Emergency Boot Witness reference implementation 
Add compiling Lean modules and Python shim for the Geometry Emergency
Boot Witness specification (graphene supercapacitor geometric encoding).

Lean modules (Semantics.Hardware.EmergencyBoot.*):
- EmergencyBootTypes: HexCoord, CapClass, OpticalPath, VoltageDifferential,
  GrapheneMemristor, HybridOpticalPath, material properties
- EmergencyBootState: PowerState, SolarPowerState, ScanState, seed assembly,
  emergency boot state machine with 6502 calculator efficiency targets
- EmergencyBootShell: Command opcodes, status byte encoding, process
  definitions, executeCommand dispatch

All use Q16_16 fixed-point arithmetic (no Float in compute paths).
Verified theorems: utilizationWithinBounds, powerFailureMonotonic,
commandOpcode_roundTrip.

Python shim (4-Infrastructure/hardware/emergency_boot/):
- EmergencyBootEngine simulating FPGA geometric scan and seed extraction
- Demo CLI showing power failure → self-powered calculator mode →
  geometric scan → seed assembly flow

Build: 3302 jobs, 0 errors (narrow target), 3313 jobs, 0 errors (Compiler)

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
 2026-05-27 23:00:39 -05:00
Brandon Schneider
a8a163650a fix(infra): resolve k3s services startup issues and update ingress configuration 
- Revert builder image in embedded_surface Dockerfile to rust:bookworm for glibc compatibility with bookworm-slim runner.
- Replace racknerd-surface.json Git LFS pointer with the actual retrieved JSON config to resolve parse errors.
- Separated and imported regenerated docker images for stubs and credential-server on all cluster nodes.
- Fixed Ingress resources and middleware to target the correct authentik-server service name.
- Rewrote verification script checks to handle iptables-based ports and relative redirects robustly.
- Updated nixos-laptop IP in node topology documentation.

Build: 0 jobs, 0 errors
 2026-05-27 17:39:00 -05:00
Brandon Schneider
3044f36df7 docs(agents): project-wide AGENTS.md audit — cross-refs, baseline, contracts 
Actions taken from 5-agent audit sweep (audit date 2026-05-26):

AGENTS.md / docs sync:
- root AGENTS.md: add scripts/qc-flag and lean_expert_agent to Nested Contracts
- All 6 nested AGENTS.md files: append Cross-References section pointing to
  root for Post-Interaction Workflow, Programming Choice Flow, Do Not Sweep,
  Git Remote Hygiene (Lean, Infra, text-to-cad, docs, qc-flag, lean_expert_agent)
- 6-Documentation/docs/AGENTS.md: cross-ref also lists AVMIsa.Emit sole output
  boundary and Compiler surface blessing

Lean build baseline:
- 0-Core-Formalism/lean/Semantics/AGENTS.md: update blessed Compiler Surface
  header to commit 49f0dfb3; correct job count to 3311 (lake build Compiler)

ARCHITECTURE.md:
- §7 repo table: add RRC.Emit, AVMIsa.Emit, RRC.Corpus278 to Lean/Semantics entry
- New §7.1 Compiler Surface: documents 3-root pipeline and sole output boundary
- §4 Data Flow: annotate output with AVMIsa.Emit sole-boundary note

TODO_MAP.md:
- Phase A6: add 3 new Lean deliverables (Corpus278, RRC.Emit, AVMIsa.Emit);
  update status/result with Compiler build baseline; refine next action

Build: Compiler 3311 jobs, 0 errors (no Lean changes).

Generated with Devin (https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
 2026-05-26 22:34:46 -05:00
Brandon Schneider
073a70eb86 WIP: accumulated changes 2026-05-25 16:24:21 -05:00
Brandon Schneider
fd863af6fd Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 
- .devcontainer/Dockerfile: add PostgreSQL client libs, OpenSSL/libffi headers, gfortran/BLAS for scipy, rclone; install full Python dependency set (boto3, psycopg2-binary, fastapi, uvicorn, notion-client, httpx, pytest, numpy, scipy, etc.) in uv-managed venv; add rclone S3 gateway init script as ENTRYPOINT
- .devcontainer/devcontainer.json: switch from build to pre-built image (localhost/research
 2026-05-19 01:52:14 -05:00
Brandon Schneider
99fc5d750b Add storage observer/optimizer agent (storage_agent.py) 
Full Observe→Decide→Act→Emit loop for the restic + Garage + rclone stack:

- storage_agent.py: probes Garage health, restic snapshot count and dedup
  ratio (Q16_16), backup log staleness, cold-copy drift; triggers corrective
  actions (snap, cold-copy, verify, forget, offload, garage restart) based
  on Q16_16 threshold comparisons. Emits hash-chained receipts to both a
  local JSONL log (~/.cache/storage-agent.jsonl) and
  s3://research-stack/agent-receipts/ in Garage.

- storage-agent.service / storage-agent.timer: systemd units installed
  system-wide; timer fires every 15 min (RandomizedDelaySec=60). Includes
  PATH=/home/allaun/.local/bin:... so aws cli and restic are resolved.

- .git/hooks/post-commit updated: agent runs (--once) in the background
  after each restic snap, so post-commit state is always observed.

- 4-Infrastructure/AGENTS.md: full documentation of agent contract,
  receipt schema, trigger table, log paths, and usage examples.

Shim boundary: zero logic — pure subprocess calls to existing CLI tools.
No Float, no new dependencies. py_compile and live dry-run verified.

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
 2026-05-18 22:32:52 -05:00
Brandon Schneider
cb96c6bed2 Update repository agent operating contracts 2026-05-11 22:48:54 -05:00
Brandon Schneider
29f9b78b6d Stage stack solidification source slice 2026-05-11 22:08:10 -05:00