5f80fd8429
chore(repo): push local 768-commit branch state onto clean remote baseline
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This squashes all local history (768 commits) onto the scrubbed PR #90
baseline. Individual commits were lost during filter-repo corruption;
the working tree content is preserved intact.
Build: N/A (working tree state only)
2026-06-15 22:46:50 -05:00
Brandon Schneider
ef7b0849d5
fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems
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Security & correctness fixes from full adversarial review:
Lean (7 fixes):
- FixedPoint.lean: guard false theorem with n > 0 precondition
- QFactor.lean: remove double-scaling error in energy decrease
- AVMIsa/Step.lean: implement addSatQ16/subSatQ16 primitives
- BraidEigensolid.lean: fix crossStep second output argument swap
- SSMS.lean: complete ACI preservation proof (with rounding caveat)
- HouseholderQR.lean: add n > 0 precondition to spectral theorem
Verilog (7 fixes):
- q16_lut_core.v: fix multiply shift (16 → 32 bits)
- q16_lut_top.v: fix valid bit (0 → 1)
- cff_accelerator.v: fix SHA-256 padding (len < 448 check)
- research_stack_top.v: fix trigger aliasing (unique counters)
- Blitter6502OISC_small.v: fix address width (15 → 16 bits)
- spatial_hash_bram.v: add OOB write guard
- tmr_oepi_safety_fsm.v: fix double-increment race
WGSL (6 fixes):
- shaders.wgsl: atomicAdd for concurrent writes
- frustration_qubo.wgsl: double-buffer + CAS loop
- braid_fft.wgsl: workgroupBarrier synchronization
- burgers_scar_filter.wgsl: atomic E_bins array
Rust (9 fixes):
- thermodynamic.rs: Arc::from_raw → Arc::clone (double-free)
- thermodynamic.rs: Box::into_raw → Box (leak)
- tools/src/lib.rs: shell injection → shlex.quote
- ene-node/src/lib.rs: LRU caps, constant-time HMAC, peer caps
Python (6 fixes):
- similarity/__init__.py: pickle.load → RestrictedUnpickler
- AI-Feynman: torch.load → weights_only=True (14 calls)
- fetch_arxiv.py, fetch_s2.py: eval → ast.literal_eval
- topology.py: os.system → shutil.copy2
- SSH pipe: os.system → base64 pipe
Build: lake build 3572 jobs, 0 errors
2026-05-31 23:38:03 -05:00
Brandon Schneider
12f6081f70
Wire ENE context into remote proof checks
2026-05-25 22:07:58 -05:00
Brandon Schneider
aa198c49d1
Stabilize ENE API and context shim
2026-05-25 21:06:46 -05:00
Brandon Schneider
de631bf1b7
WIP: accumulated changes
2026-05-25 16:24:21 -05:00
Brandon Schneider
0c502bc58a
fix(rds): restore ENE storage observation probe
2026-05-20 18:53:55 -05:00
Brandon Schneider
65853c967a
Fix Dependabot vulns: update sqlx 0.7->0.8.6, add ene-rds Cargo.lock
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Security fixes:
- rds_probe: bump sqlx 0.7.4 -> 0.8.6 (GHSA-xmrp-424f-vfpx MEDIUM)
Also removes transitive rustls-webpki 0.101.7 dependency chain,
fixing GHSA-82j2-j2ch-gfr8 (HIGH), GHSA-xgp8-3hg3-c2mh,
GHSA-965h-392x-2mh5 (LOW) in this workspace.
- ene-rds already has rustls-webpki 0.103.13 (patched); commit its
Cargo.lock for reproducible builds.
Generated with [Devin](https://cli.devin.ai/docs )
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-05-19 08:09:34 +00:00
Brandon Schneider
09cfe00eec
Expand ene-rds Rust workspace and refine devcontainer
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- Add ene-node, ene-rds-chat, ene-rds-ephemeral, ene-rds-wiki,
ene-storage, ene-sync crates to the ene-rds workspace
- Extend ene-rds-core with shared types and cluster messaging
- Add review doc and wiki page for the RDS Rust workspace
- Fix devcontainer: custom /etc/passwd with researcher user,
add gcc/glibc/binutils for VS Code server compatibility,
include util-linux, gnutar, gzip; add LD_LIBRARY_PATH
- Ignore Nix build output (`result`) and Rust artifacts
Generated with [Devin](https://cli.devin.ai/docs )
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-05-19 07:52:39 +00:00
Brandon Schneider
ac4e23dc9b
Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems
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- .devcontainer/Dockerfile: add PostgreSQL client libs, OpenSSL/libffi headers, gfortran/BLAS for scipy, rclone; install full Python dependency set (boto3, psycopg2-binary, fastapi, uvicorn, notion-client, httpx, pytest, numpy, scipy, etc.) in uv-managed venv; add rclone S3 gateway init script as ENTRYPOINT
- .devcontainer/devcontainer.json: switch from build to pre-built image (localhost/research
2026-05-19 01:52:14 -05:00
