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10 commits

Author SHA1 Message Date
5f80fd8429 chore(repo): push local 768-commit branch state onto clean remote baseline
This squashes all local history (768 commits) onto the scrubbed PR #90
baseline. Individual commits were lost during filter-repo corruption;
the working tree content is preserved intact.

Build: N/A (working tree state only)
2026-06-15 22:46:50 -05:00
Brandon Schneider
a50ffafb8b fix(ingress): correct Authentik forward-auth service namespace
- Change middleware address from authentik-server.services.svc.cluster.local
  to authentik-server.authentik.svc.cluster.local (Authentik lives in
  authentik namespace, not services)
- Create ExternalName service authentik-server in services namespace so
  the rs-auth Ingress can route to the cross-namespace service

Build: no build needed
2026-05-31 23:15:46 -05:00
Brandon Schneider
a031a73dfe fix(infra): standardize k3s cluster — Traefik, ingress, architecture docs, Ray GPU workers
Architecture alignment:
- Rewrite k3s-server.nix from aspirational role=server to actual role=agent
  (cupfox is the real control-plane at 100.110.163.82:6443)
- Update flake.nix: correct serverAddr for all nodes, annotate dead nodes,
  fix hostname from nixos-laptop to nixos
- Update join-agent.sh default SERVER to cupfox
- Document actual vs intended architecture in comments

Ingress:
- Add rs-apps-books Ingress for audiobookshelf (/apps/books → media ns)
- Add strip-apps-books middleware for prefix stripping
- Create ray-ingress.yaml for Ray dashboard at /server/ray

Ray:
- Fix raycluster.yaml: enable dashboard, mount /dev/dri on gpu-workers
- Point gpu-workers to qfox-1 (was neon-64gb)
- Remove nvidia.com/gpu resource dependency (use /dev/dri via Mesa)

Security:
- Move OPENID_CLIENT_SECRET from plaintext to K8s Secret ref
- Update manifest to use valueFrom.secretKeyRef

Cleanup:
- Remove 53 committed test PNG screenshots from git tracking
- Remove auth-state.json from git tracking
- Add *.png, *.json to tests/.gitignore

Build: no build needed
2026-05-31 23:13:04 -05:00
Brandon Schneider
2aef54d052 chore: commit accumulated working tree changes
Lean: update Semantics modules, add new numerics/physics data files
Hardware: update FPGA bitstreams (tangnano9k_uart_loopback)
Infra: k3s-flake tests, netcup-vps configuration, VCN compute substrate
Docs: ARCHITECTURE, specs, citation updates
2026-05-30 00:10:02 -05:00
Brandon Schneider
69b984c410 fix(infra): resolve k3s services startup issues and update ingress configuration
- Revert builder image in embedded_surface Dockerfile to rust:bookworm for glibc compatibility with bookworm-slim runner.
- Replace racknerd-surface.json Git LFS pointer with the actual retrieved JSON config to resolve parse errors.
- Separated and imported regenerated docker images for stubs and credential-server on all cluster nodes.
- Fixed Ingress resources and middleware to target the correct authentik-server service name.
- Rewrote verification script checks to handle iptables-based ports and relative redirects robustly.
- Updated nixos-laptop IP in node topology documentation.

Build: 0 jobs, 0 errors
2026-05-27 17:39:00 -05:00
Brandon Schneider
38f1022a20 feat(k3s-server): Traefik NodePort + host Caddy pass-through (internal-only)
Port conflict resolution:
- Add HelmChartConfig to pin Traefik web entrypoint to NodePort 30080
  (not host :80) so k3s Traefik and host Caddy do not race for the port
- Add host Caddy on :80 as a minimal pass-through to Traefik :30080;
  carries X-Forwarded-* headers so Traefik sees the real client IP and
  the correct Host. No TLS, no Porkbun, no subdomain logic — all of
  that stays on the edge Caddy (k3s-edge.nix)
- Caddy after= k3s.service so Traefik NodePort is ready before proxying

Authentik port fix:
- Change authentik server + worker services from NodePort 30080 to
  ClusterIP; Traefik reaches Authentik via the rs-auth Ingress and
  cluster DNS, no NodePort required

New manifests (internal, no public-traffic impact):
- manifests/ingress/: Traefik Ingress resources + Middleware CRDs
  (/apps/*, /server/* → forward_auth + strip-prefix; /api/* → strip only;
  / → Homer + forward_auth; auth.* → Authentik, no middleware)
- manifests/hermes/: placeholder chat/orchestrator service
- manifests/credential-server/: token-auth credential vault stub
- manifests/control-plane/: registry-api, jobs-api, blobs-api health stubs
- manifests/homer/configmap.yaml: updated dashboard links to canonical paths

Deploy order: rebuild k3s-server first, verify Traefik + Ingress
internally, then deploy k3s-edge (commit 3 / next step).

Generated with Devin (https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-05-26 21:03:54 -05:00
Brandon Schneider
02f1c928d7 refactor(rds): consolidate 14 psycopg2 connect patterns into shared rds_connect module
Creates 4-Infrastructure/shim/rds_connect.py with a single connect_rds()
function that resolves connection parameters in priority order:
  1. explicit kwargs
  2. DATABASE_URL env var (postgres://user:pass@host:port/dbname?sslmode=...)
  3. individual RDS_* env vars (RDS_HOST, RDS_PORT, RDS_USER, etc.)
  4. built-in defaults

Auth resolution (when password is empty or RDS_IAM=1):
  1. RDS_IAM_TOKEN env var (pre-computed)
  2. boto3 SDK generate_db_auth_token (preferred)
  3. subprocess aws rds generate-db-auth-token (fallback)
  4. RDS_PASSWORD env var (non-IAM)

Replaces 8 connection pattern variants across 14 active shims:
  - subprocess + RDS_IAM_TOKEN fallback: pist_trace_classify_mcp, joint_classifier,
    pist_prove_and_classify, ingest_57_flexures
  - boto3 SDK: ene_wiki_body_reingest, ene_migrate_and_tag, dataset_ingest_rds
  - subprocess + RDS_PASSWORD: batch_embed_artifacts, sync_wiki_to_rds, seed_flexure_dataset
  - RDS_IAM_AUTH: pist_classify
  - bashrc parsed: credential_loader

v1.4a benchmark confirmed at 100% after refactor.
2026-05-26 15:09:34 -05:00
Brandon Schneider
34768b3fe8 feat(pist): Route-Repair v1.1 — 60 failure flexures ingested, obstruction-type voting 2026-05-26 12:17:42 -05:00
Brandon Schneider
de631bf1b7 WIP: accumulated changes 2026-05-25 16:24:21 -05:00
Brandon Schneider
ac4e23dc9b Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems
- .devcontainer/Dockerfile: add PostgreSQL client libs, OpenSSL/libffi headers, gfortran/BLAS for scipy, rclone; install full Python dependency set (boto3, psycopg2-binary, fastapi, uvicorn, notion-client, httpx, pytest, numpy, scipy, etc.) in uv-managed venv; add rclone S3 gateway init script as ENTRYPOINT
- .devcontainer/devcontainer.json: switch from build to pre-built image (localhost/research
2026-05-19 01:52:14 -05:00