69988453bc
chore(infra): stage working tree modifications
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Build: 8604 jobs, 0 errors (lake build)
2026-06-22 01:23:17 -05:00
e6e241746c
fix(deps): audit-driven updates across npm, pnpm, cargo, pip
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JavaScript lockfiles:
- bezier-kit: vitest 3.2.4→3.2.6, @babel/core 7.29.0→7.29.7,
esbuild 0.27.7→0.27.2, vite 6.4.2→6.4.3
- parametric-learn: vite 8.0.10→8.0.16, form-data 4.0.5→4.0.6
- lytenyte-storage + cluster-dashboard/frontend: vite 6.4.2→6.4.3
Cargo lockfiles:
- leechy-py: pyo3 0.28.3→0.29.0 (RUSTSEC-2026-0176/0177)
- stract: rkyv 0.7.45→0.7.46 (RUSTSEC-2026-0001)
- rs-surface, ene-rds, ene-session-sync: postgres updates
- shared-data/namidb: aws-lc-sys 0.37.1→0.41.0
Python:
- whoogle-search: cryptography 46.0.7→48.0.1 (GHSA-537c-gmf6-5ccf)
Remaining blocked advisories documented in commit body metadata;
require upstream releases or source-level migrations.
2026-06-20 19:00:38 -05:00
318db01e31
refactor(infra): decommission AWS deployment artifacts
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Remove EC2/RDS deployment scripts, EC2 watchdog, and RDS substrate
provisioning files. Drop the legacy AWS API MCP server from all IDE
configs. Replace hardcoded AWS proof-server and RDS default endpoints
with localhost/env-only placeholders.
Deleted:
- 4-Infrastructure/infra/deploy_aws_language_proof_server.sh
- 4-Infrastructure/infra/aws_language_proof_server_user_data.sh
- 4-Infrastructure/infra/ec2-configuration.nix
- 4-Infrastructure/infra/ec2_idle_watchdog.py
- 4-Infrastructure/infra/ec2-idle-watchdog.service
- 4-Infrastructure/infra/ec2-idle-watchdog.timer
- 4-Infrastructure/deploy/rds-substrate/*
Changed:
- .mcp.json, .cursor/mcp.json, .roo/mcp.json, .vscode/mcp.json:
remove aws server, make remote-lean-proof URL env-only
- .vscode/settings.json: remoteLeanProof.url -> localhost
- 4-Infrastructure/infra/remote_lean_proof_mcp.py: default URL -> localhost
- ene-rds/ene-session-sync: default RDS_HOST -> localhost
- RECOVERY.md, INFRASTRUCTURE.md, TODO_MAP.md: remove AWS/EC2 refs
Build: cargo check ene-rds OK; python3 -m py_compile OK; JSON valid
2026-06-19 22:42:34 -05:00
e6bbb612d0
fix(infra): point default RDS host to neon server Tailscale IP
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- Redirected the default RDS_HOST/PGHOST database connection default
to neon-64gb (100.92.88.64) across all Python shims, shell wrappers,
and Rust probes.
- Cleaned up local defaults in rds_connect.py, sync_wiki_to_rds.py,
dataset_ingest_rds.py, batch_embed_artifacts.py, db.rs, cache-offload.sh,
db-consolidate.sh, backup.sh, and ene-api-wrapper.sh.
Build: 0 jobs, 0 errors (lake build)
2026-06-18 23:28:46 -05:00
ab6fe3e69b
fix(infra): purge all default AWS RDS hosts and IAM credentials
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- Replaced database-1-instance-1.cghu8yqogqwo.us-east-1.rds.amazonaws.com
with 'localhost' as default.
- Removed AWS IAM generate-db-auth-token CLI subprocessing and boto3
token generation blocks from rds_connect.py, ingest_flexure_joints.py,
pist_route_repair.py, and ene-api-wrapper.sh.
- Purged AWS DEFAULT_REGION and AWS_REGION configurations where applicable.
- Updated Rust rds_probe to use standard PG environment variables.
Build: 0 jobs, 0 errors (lake build)
2026-06-18 23:26:56 -05:00
475f6319ea
chore(repo): push local 768-commit branch state onto clean remote baseline
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This squashes all local history (768 commits) onto the scrubbed PR #90
baseline. Individual commits were lost during filter-repo corruption;
the working tree content is preserved intact.
Build: N/A (working tree state only)
2026-06-15 22:46:50 -05:00
Brandon Schneider
aba1fba7ad
fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems
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Security & correctness fixes from full adversarial review:
Lean (7 fixes):
- FixedPoint.lean: guard false theorem with n > 0 precondition
- QFactor.lean: remove double-scaling error in energy decrease
- AVMIsa/Step.lean: implement addSatQ16/subSatQ16 primitives
- BraidEigensolid.lean: fix crossStep second output argument swap
- SSMS.lean: complete ACI preservation proof (with rounding caveat)
- HouseholderQR.lean: add n > 0 precondition to spectral theorem
Verilog (7 fixes):
- q16_lut_core.v: fix multiply shift (16 → 32 bits)
- q16_lut_top.v: fix valid bit (0 → 1)
- cff_accelerator.v: fix SHA-256 padding (len < 448 check)
- research_stack_top.v: fix trigger aliasing (unique counters)
- Blitter6502OISC_small.v: fix address width (15 → 16 bits)
- spatial_hash_bram.v: add OOB write guard
- tmr_oepi_safety_fsm.v: fix double-increment race
WGSL (6 fixes):
- shaders.wgsl: atomicAdd for concurrent writes
- frustration_qubo.wgsl: double-buffer + CAS loop
- braid_fft.wgsl: workgroupBarrier synchronization
- burgers_scar_filter.wgsl: atomic E_bins array
Rust (9 fixes):
- thermodynamic.rs: Arc::from_raw → Arc::clone (double-free)
- thermodynamic.rs: Box::into_raw → Box (leak)
- tools/src/lib.rs: shell injection → shlex.quote
- ene-node/src/lib.rs: LRU caps, constant-time HMAC, peer caps
Python (6 fixes):
- similarity/__init__.py: pickle.load → RestrictedUnpickler
- AI-Feynman: torch.load → weights_only=True (14 calls)
- fetch_arxiv.py, fetch_s2.py: eval → ast.literal_eval
- topology.py: os.system → shutil.copy2
- SSH pipe: os.system → base64 pipe
Build: lake build 3572 jobs, 0 errors
2026-05-31 23:38:03 -05:00
Brandon Schneider
e18a284082
Wire ENE context into remote proof checks
2026-05-25 22:07:58 -05:00
Brandon Schneider
b57e1c2740
Stabilize ENE API and context shim
2026-05-25 21:06:46 -05:00
Brandon Schneider
073a70eb86
WIP: accumulated changes
2026-05-25 16:24:21 -05:00
Brandon Schneider
e6f770324d
fix(rds): restore ENE storage observation probe
2026-05-20 18:53:55 -05:00
Brandon Schneider
8e5efbe11f
Fix Dependabot vulns: update sqlx 0.7->0.8.6, add ene-rds Cargo.lock
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Security fixes:
- rds_probe: bump sqlx 0.7.4 -> 0.8.6 (GHSA-xmrp-424f-vfpx MEDIUM)
Also removes transitive rustls-webpki 0.101.7 dependency chain,
fixing GHSA-82j2-j2ch-gfr8 (HIGH), GHSA-xgp8-3hg3-c2mh,
GHSA-965h-392x-2mh5 (LOW) in this workspace.
- ene-rds already has rustls-webpki 0.103.13 (patched); commit its
Cargo.lock for reproducible builds.
Generated with [Devin](https://cli.devin.ai/docs )
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-05-19 08:09:34 +00:00
Brandon Schneider
9d450756c1
Expand ene-rds Rust workspace and refine devcontainer
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- Add ene-node, ene-rds-chat, ene-rds-ephemeral, ene-rds-wiki,
ene-storage, ene-sync crates to the ene-rds workspace
- Extend ene-rds-core with shared types and cluster messaging
- Add review doc and wiki page for the RDS Rust workspace
- Fix devcontainer: custom /etc/passwd with researcher user,
add gcc/glibc/binutils for VS Code server compatibility,
include util-linux, gnutar, gzip; add LD_LIBRARY_PATH
- Ignore Nix build output (`result`) and Rust artifacts
Generated with [Devin](https://cli.devin.ai/docs )
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-05-19 07:52:39 +00:00
Brandon Schneider
fd863af6fd
Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems
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- .devcontainer/Dockerfile: add PostgreSQL client libs, OpenSSL/libffi headers, gfortran/BLAS for scipy, rclone; install full Python dependency set (boto3, psycopg2-binary, fastapi, uvicorn, notion-client, httpx, pytest, numpy, scipy, etc.) in uv-managed venv; add rclone S3 gateway init script as ENTRYPOINT
- .devcontainer/devcontainer.json: switch from build to pre-built image (localhost/research
2026-05-19 01:52:14 -05:00
