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Author SHA1 Message Date
Brandon Schneider
722da7018a Rust ene-session-sync: complete rewrite with Python adaptation layer 
- source.rs: Add ClawSource adapter that reads .claw/sessions/*.jsonl (skips
  LFS stubs), parses both full-JSON and JSONL-stream formats, normalises into
  ChatSession/ChatMessage identical to the OpenCode path.

- models.rs: Add title/agent/model fields to ChatSession; remove unused
  chrono import.

- normalize.rs: Populate title/agent/model from OpenCodeSession.

- sink.rs: Full rewrite:
  - DDL adds title/agent/model columns + ALTER TABLE IF NOT EXISTS migration
    path for existing clusters.
  - upsert_session and upsert_messages parameter counts match placeholders
    ($19 and $13 respectively).
  - FTS index uses COALESCE to handle NULL text_content.
  - sslmode= token stripped before parse so NoTls connect doesn't reject
    it; README documents the SSL upgrade path (tokio-postgres-rustls).
  - with-serde_json-1 feature added to tokio-postgres dep for JSONB params.

- main.rs:
  - Replace DefaultHasher sha256_text with FNV-1a 64-bit (correct hex digest).
  - Add ClawSync, List, Get subcommands.
  - Remove unused Context import.

- bridge.rs: Rewrite to use bridge_wrapper.py subprocess rather than inline
  -c script; resolves wrapper path relative to infra_dir or CARGO_MANIFEST_DIR;
  unwraps {"ok":true,"data":{}} envelope; health_check() tests python3 only.

- embed.rs: Remove unused OllamaEmbedRequest import.

- systemd/: Add ene-session-sync.service + .timer (5-min cadence, 2-min
  OnBootSec, Persistent=true for catch-up after suspend).

- README.md: Architecture diagram, CLI reference, schema, build/install,
  systemd install, Python bridge setup.

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Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
 2026-05-19 09:16:19 +00:00
Brandon Schneider
65853c967a Fix Dependabot vulns: update sqlx 0.7->0.8.6, add ene-rds Cargo.lock 
Security fixes:
- rds_probe: bump sqlx 0.7.4 -> 0.8.6 (GHSA-xmrp-424f-vfpx MEDIUM)
  Also removes transitive rustls-webpki 0.101.7 dependency chain,
  fixing GHSA-82j2-j2ch-gfr8 (HIGH), GHSA-xgp8-3hg3-c2mh,
  GHSA-965h-392x-2mh5 (LOW) in this workspace.
- ene-rds already has rustls-webpki 0.103.13 (patched); commit its
  Cargo.lock for reproducible builds.

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Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
 2026-05-19 08:09:34 +00:00
Brandon Schneider
09cfe00eec Expand ene-rds Rust workspace and refine devcontainer 
- Add ene-node, ene-rds-chat, ene-rds-ephemeral, ene-rds-wiki,
  ene-storage, ene-sync crates to the ene-rds workspace
- Extend ene-rds-core with shared types and cluster messaging
- Add review doc and wiki page for the RDS Rust workspace
- Fix devcontainer: custom /etc/passwd with researcher user,
  add gcc/glibc/binutils for VS Code server compatibility,
  include util-linux, gnutar, gzip; add LD_LIBRARY_PATH
- Ignore Nix build output (`result`) and Rust artifacts

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Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
 2026-05-19 07:52:39 +00:00
Brandon Schneider
ac4e23dc9b Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 
- .devcontainer/Dockerfile: add PostgreSQL client libs, OpenSSL/libffi headers, gfortran/BLAS for scipy, rclone; install full Python dependency set (boto3, psycopg2-binary, fastapi, uvicorn, notion-client, httpx, pytest, numpy, scipy, etc.) in uv-managed venv; add rclone S3 gateway init script as ENTRYPOINT
- .devcontainer/devcontainer.json: switch from build to pre-built image (localhost/research
 2026-05-19 01:52:14 -05:00
Brandon Schneider
28d02223a6 Fix Porkbun DNS, automate postgres backups, fix rds_probe vulns 
- Porkbun API keys verified working (SUCCESS ping)
- Automated daily AppFlowy postgres backups via systemd timer
- rds_probe: switch from rustls to native-tls (fixes 3 Dependabot alerts)
- ec2-config.nix: add appflowy-backup service and timer
 2026-05-18 11:52:01 -05:00
Brandon Schneider
04c2796cd3 Add apiProvider service kind, credential gateway, and cupfox routing 
- TopologyNode.lean: apiProvider service kind with network-only requirement
- server.py: OP_CREDENTIALS handler, RDS-backed wiki/fractal fold layers,
  /credentials HTTP endpoint via SurfaceHandler
- cupfox-config.nix: Caddy routes for /api/credentials/ -> EC2 (100.69.1.43)
  and /git/ -> local Forgejo
 2026-05-18 10:58:35 -05:00
Brandon Schneider
d4603644d2 Add EC2 recovery backup: NixOS config, AppFlowy compose/env template, credential server bootstrap, recovery guide 
- ec2-configuration.nix: full NixOS config for aws-nixos-node-1
- docker-compose.minimal.yml: AppFlowy Cloud compose with search_path fix
- .env.example: sanitized AppFlowy env template
- nixos-setup-cred-server.sh: credential server bootstrap
- RECOVERY.md: step-by-step rebuild instructions
- .gitignore: secrets dir excluded
- credential_provider.py reverted to repo HEAD (EC2 had hardcoded AWS creds)
- racknerd_root.txt removed from working tree
 2026-05-18 10:44:23 -05:00
Brandon Schneider
ba1e4cf191 feat: add RDS probe tool, credential server, and Notion/Linear ingestion pipeline 
New infrastructure components:
- rds_probe: Rust database inspection tool with IAM auth
- credential_server.py: REST credential provider server
- credential_provider.py: credential resolution chain
- ene_rds_fractal_fold.py / ene_rds_wiki_layer.py: RDS-backed ENE layers
- import_dumps_to_rds.py / export_linear_from_rds.py: ingestion pipeline
- recover_credential_server.sh: deployment script (sanitized)

Sanitize hardcoded secrets across codebase:
- Strip API keys from recover_credential_server.sh → env var lookups
- Replace hardcoded Wolfram appid (HYJE3R3R63) → env var in 5 scripts
- Strip fallback key values from config/index.js
- Add .claude/ and optimized_basis_v3.bin to .gitignore

Ingested 2,685 records into RDS: 2,421 Linear issues + 264 wiki pages
 2026-05-18 00:31:44 -05:00
Brandon Schneider
382277ec28 chore: preserve working tree before secure wipe 
- Update .gitignore with **/target/ for Rust build artifacts
- Add eval receipts to UniversalBridge.lean (compile-time verification comments)
- Add PCIe Idle-Cycle Compute Harvester to ROADMAP.md
- Clean up deprecated scripts, generated Verilog, and old tools (23 deletions)
- Stage new infrastructure: Xen/Alpine embedded surface, QFOX topology manager
- Stage new probes: boundary activation field, holographic carving
- Stage new applications: finance manager, script roots
- Stage new research spec: PCIe idle-cycle substrate
 2026-05-13 17:36:02 -05:00
Brandon Schneider
731d470d47 Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
Brandon Schneider
ff8fa74092 Point ENE scripts at shared data 2026-05-11 22:10:55 -05:00
Brandon Schneider
41d4df4ee4 wip: refined investigation script for Erdős–Gyárfás conjecture 
Created refined investigation script for Erdős–Gyárfás conjecture
where previous test found no power-of-two cycles (conjecture holds: False).

Refinements:
- Regular graph construction (all vertices same degree)
- Exhaustive DFS cycle detection
- More samples per n (5 instead of 3)
- Extended n values [8, 10, 12, 14, 16]

Goal: Determine if previous negative result was due to random graph construction
or if regular graphs with exhaustive cycle detection find power-of-two cycles.

Script created: investigate_erdos_gyarfas_refined.py
Execution canceled by user - awaiting further instructions.
 2026-05-08 14:50:03 -05:00
Brandon Schneider
453a366949 collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 
- Prover-Integrated Orchestration Layers (L0-L3): Goedel-Prover-V2 watchdog, BFS-Prover-V2 swarm consensus, bf4prover topology adaptation
- FAMM Verilator benchmark: uniform vs preshaped delay comparison (4.4x speedup)
- Swarm topological device prober: 11 agents probing traces, caps, delays, errors, vias, PDN
- Spec sheet puller: 10 components with key params and topological relevance
- Virtual FPGA system tests: 6/6 passed, 134K ops/s throughput
- Fixed merge conflicts in AI-Newton test_experiment.ipynb
 2026-05-06 23:42:01 -05:00
Brandon Schneider
31f953bada Consolidate research stack updates 2026-05-05 21:09:48 -05:00
Brandon Schneider
4eee4a07f6 initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00