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Author SHA1 Message Date
Brandon Schneider
de06a85a83 Quarantine sorry blocks, fix RcloneIntegration proof, add ENE wiki re-ingest and ZFS setup. 
Lean sorry audit (lake build passes, 3539 jobs):
- FixedPointBridge: 10 sorrys quarantined with TODO(lean-port) — all blocked on
  Float→Q bridge lemmas (Q0_16/Q16_16 round-trip error bounds)
- HyperbolicStateSurface: 3 sorrys quarantined — need Q16_16.sqrt error-bound
  and Q16_16.add_pos_of_pos lemmas
- CostEffectiveVerification: 1 sorry quarantined; also fixed pre-existing
  struct/structure typo, Array.Repr, Real.abs syntax, and Bool/Prop mismatch
- MMRFAMMUnification: 1 sorry quarantined — Array.foldl induction lemma missing
- WaveformTeleport: constantWaveformAtFixedPoint_base native_decide was
  numerically false; replaced with sorry + TODO(lean-port)
- RcloneIntegration: startTask_pending_non_increasing PROVED — only sorry fully
  closed, using List.partition_eq_filter_filter + List.filter_sublist
- DiffusionSNRBias, GPUVerificationMetaprobe, QFactor, SSMS: already properly
  quarantined; verified build passes

Infrastructure additions:
- ene_wiki_body_reingest.py: 5-source priority resolver for ene.wiki_revisions
  text="" gap (TiddlyWiki → filesystem → Notion → package description → stub)
- zfs-pool-setup.sh: stackcache pool (500G sparse vdev) with hot/warm/cold
  thermal-zone dataset hierarchy; requires reboot to 7.0.9-1-cachyos kernel

Docs:
- ROADMAP.md: mark Lean→Verilog/FPGA targets as LONG-TERM in Phase 6
- UNIFIED_SIGNAL_ARCHITECTURE.md: add FPGA-column deferral notice

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
 2026-05-18 23:01:44 -05:00
Brandon Schneider
5a763468c9 integrate infrastructure config, axiom cleanup, and documentation updates 
- cupfox-config.nix: add Open WebUI container with chat.researchstack.info proxy,
  gather-metrics service/timer, rclone, and tmpfiles for persistent storage
- Lean semantics: reduce axiom count from 109 to 18 across 10 files;
  FixedPoint now 0 axioms, 0 sorries with 12 theorems
- Documentation: update AGENTS.md with current axiom/sorry counts and
  FixedPoint status; refine bind signature
- Add topology scripts, CGA/FAMM/GeneticOptimizer/MMRFAMM Lean modules,
  devcontainer config, MEMORY.md, and Modelfile
 2026-05-17 12:03:19 -05:00
Brandon Schneider
b5139fb484 docs(system): separate FRT core from personal software inventory 
Provide two lists for clean system recovery:

- frt-core-packages.txt: 90 packages required to build, verify, and run
  the Research Stack (VITAL + NEEDED tiers). Install first on fresh system.

- personal-packages.txt: ~200 packages that are NOT required for FRT work.
  These are quality-of-life, niche domain, or redundant tools. Safe to remove
  for a clean research environment; reinstall on demand.

Total potential savings: ~3-5GB by removing personal tier.

Also includes the full 391-package master inventory with per-package
justifications in software_inventory_2026-05-13.md.
 2026-05-13 18:29:40 -05:00
Brandon Schneider
a1907360dc docs(system): inventory all 391 installed packages with FRT separation 
Categorize every explicitly installed package into:
- VITAL: system boot/connectivity/authentication/update backbone
- NEEDED: core Research Stack toolchain (Rust, Lean, Python, Ollama, etc.)
- USEFUL: quality-of-life and secondary workflows
- IF YOU MUST: heavy/duplicate/niche tools safe to remove

Purpose: enable clean separation between personal/cosmetic software
and Fractal Recursion Theory runtime dependencies. Provides
per-package removal commands for ~2-3GB quick savings.
 2026-05-13 18:28:08 -05:00
Brandon Schneider
a6311ed940 chore: preserve working tree before secure wipe 
- Update .gitignore with **/target/ for Rust build artifacts
- Add eval receipts to UniversalBridge.lean (compile-time verification comments)
- Add PCIe Idle-Cycle Compute Harvester to ROADMAP.md
- Clean up deprecated scripts, generated Verilog, and old tools (23 deletions)
- Stage new infrastructure: Xen/Alpine embedded surface, QFOX topology manager
- Stage new probes: boundary activation field, holographic carving
- Stage new applications: finance manager, script roots
- Stage new research spec: PCIe idle-cycle substrate
 2026-05-13 17:36:02 -05:00
Brandon Schneider
cb96c6bed2 Update repository agent operating contracts 2026-05-11 22:48:54 -05:00
Brandon Schneider
a99e839bab Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
Brandon Schneider
d9995cf2de Stage JXL starfield replay slice 2026-05-11 22:08:44 -05:00
Brandon Schneider
29f9b78b6d Stage stack solidification source slice 2026-05-11 22:08:10 -05:00
Brandon Schneider
06c83af4c8 Add EntropyCollapseDetector kernel and arithmetic spec 
- Add EntropyCollapseDetector.lean: executable checks for triple condition
  (braid crossings, σ_q/Hurst, D_q/Rényi D_2) with dense_rank tie handling
- Add Manifest.lean: imports EntropyCollapseDetector into HCMMR
- Add ArithmeticSpec_Corrected_2026-05-11.md: verified arithmetic constants
  K=21 for W=8 (~5% FPR), σ_c=0.4, D_c=0.7 (heuristic)

Arithmetic self-verified in Python:
- Braid crossings: 12 (K=7 non-selective, K=21 selective)
- σ_q = H = 0.032 (anti-persistent oscillating series)
- D_2 = 0.514 (moderate concentration)
- D_c=1.2 invalid for 1D Rényi D_2; corrected to 0.7

Prime gap re-test with K=21 shows signal mostly dies:
- 1M primes: 86,565 fires at K=7 (artifact) vs 38 at K>21 (genuine)
- Detector now selective but potentially too conservative

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
 2026-05-11 21:44:47 -05:00
Brandon Schneider
c7989636b7 Document legacy recovery trigger 2026-05-11 15:11:18 -05:00
Brandon Schneider
38ddec024d Add RRC projection receipts and roadmap mirrors 2026-05-08 14:50:03 -05:00
Allaun Silverfox
c6e2d33ef3 docs: add LLM refinement protocol 2026-05-07 08:21:35 -05:00
Brandon Schneider
c6921dbb89 ingest: erans enumerative rANS reference + AGENTS.md rules 1.10, 1.11 
erans (izabera): streamable single-pass rANS, enumerative coding bound.
NO LICENSE — algorithmic ideas captured as reference only, zero code copied.
5 key ideas: single-pass adaptive, enumerative bound, shrub DS,
streaming renorm, histogram rice coding.

AGENTS.md additions:
- 1.10: Never assume any instruction set (SIMD opportunistic, not structural)
- 1.11: Never incorporate unlicensed code (reference notes only, write from scratch)
 2026-05-07 02:18:29 -05:00
Brandon Schneider
0cf775c80e collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 
- Prover-Integrated Orchestration Layers (L0-L3): Goedel-Prover-V2 watchdog, BFS-Prover-V2 swarm consensus, bf4prover topology adaptation
- FAMM Verilator benchmark: uniform vs preshaped delay comparison (4.4x speedup)
- Swarm topological device prober: 11 agents probing traces, caps, delays, errors, vias, PDN
- Spec sheet puller: 10 components with key params and topological relevance
- Virtual FPGA system tests: 6/6 passed, 134K ops/s throughput
- Fixed merge conflicts in AI-Newton test_experiment.ipynb
 2026-05-06 23:42:01 -05:00
Brandon Schneider
0709b298b3 Consolidate research stack updates 2026-05-05 21:09:48 -05:00
Allaun Silverfox
0c1008b7f5 Add plant-stress ultrasound to BioPhonon translation equations 2026-05-05 12:37:39 -05:00
Allaun Silverfox
ba20a3cf18 Add q-desic wormhole throat equation update 2026-05-05 08:39:39 -05:00
Brandon Schneider
920f02a024 Add ENE research topic candidates, compression-core, notion-native-tauri, linear-native-tauri 2026-05-04 19:08:20 -05:00
Brandon Schneider
5f88abf618 initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00