5 commits

Author	SHA1	Message	Date
Brandon Schneider	0e32d2e049	devcontainer: replace Alpine base with nixos/nix; add sagemath ... Dockerfile: - FROM alpine:3.19 → FROM nixos/nix:latest - Replace all apk add commands with nix profile install, matching the devPkgs set in flake.nix (the authoritative build path) - System packages, LaTeX (texliveFull), math CLI (gnuplot, maxima, wxmaxima, octave, sage, typst) all installed via nix profile - Remove separate typst binary download — nixpkgs#typst used instead - useradd replaces adduser (nixos/nix base uses shadow-utils not busybox) flake.nix: - Add sage (SageMath 10.5) to devPkgs - Add pkgs.sage/bin to container PATH Generated with [Devin](https://cli.devin.ai/docs) Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>	2026-05-19 09:40:14 +00:00
Brandon Schneider	b52f79d1b4	devcontainer: add LaTeX, typst, math CLI tools, and Python math packages ... flake.nix (authoritative — Nix-built OCI image): - pythonEnv: add mpmath, matplotlib, seaborn, pandas, polars, scikit-learn - New rEnv binding: R via rWrapper with tidyverse, ggplot2, dplyr, tidyr, readr, purrr, stringr, forcats, lubridate, MASS, Matrix, survival, knitr, rmarkdown - devPkgs: add texliveFull, gnuplot, maxima, wxmaxima, octave, rEnv, typst - PATH env: expose texliveFull, typst, gnuplot, maxima, octave, rEnv bins Dockerfile (Alpine reference — kept in sync): - apk: add texlive-full, gnuplot, maxima, octave, R - New RUN layer: typst static binary from GitHub releases (musl build) - uv pip install: add mpmath, matplotlib, seaborn, pandas, polars, scikit-learn Note: sage is not packaged in nixpkgs 24.11; mpmath covers arbitrary-precision arithmetic needs. wxmaxima omitted from Dockerfile (requires display server; headless image). Generated with [Devin](https://cli.devin.ai/docs) Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>	2026-05-19 09:35:35 +00:00
Brandon Schneider	e2bbb611ea	devcontainer: bake Tailscale static binary into Alpine image ... - Add iproute2 to apk dependencies (needed by tailscaled) - Download latest Tailscale stable release at build time via pkgs.tailscale.com and install tailscale + tailscaled to /usr/local/bin - Write a _ts_start() shell function into /home/researcher/.bashrc that: - starts tailscaled in userspace-networking mode (no TUN device, no root) - uses a per-user socket at ~/.local/share/tailscale/tailscaled.sock - is a no-op if the daemon is already running Generated with [Devin](https://cli.devin.ai/docs) Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>	2026-05-19 09:18:40 +00:00
Brandon Schneider	fd863af6fd	Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems ... - .devcontainer/Dockerfile: add PostgreSQL client libs, OpenSSL/libffi headers, gfortran/BLAS for scipy, rclone; install full Python dependency set (boto3, psycopg2-binary, fastapi, uvicorn, notion-client, httpx, pytest, numpy, scipy, etc.) in uv-managed venv; add rclone S3 gateway init script as ENTRYPOINT - .devcontainer/devcontainer.json: switch from build to pre-built image (localhost/research	2026-05-19 01:52:14 -05:00
Brandon Schneider	5a763468c9	integrate infrastructure config, axiom cleanup, and documentation updates ... - cupfox-config.nix: add Open WebUI container with chat.researchstack.info proxy, gather-metrics service/timer, rclone, and tmpfiles for persistent storage - Lean semantics: reduce axiom count from 109 to 18 across 10 files; FixedPoint now 0 axioms, 0 sorries with 12 theorems - Documentation: update AGENTS.md with current axiom/sorry counts and FixedPoint status; refine bind signature - Add topology scripts, CGA/FAMM/GeneticOptimizer/MMRFAMM Lean modules, devcontainer config, MEMORY.md, and Modelfile	2026-05-17 12:03:19 -05:00