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11 commits

Author SHA1 Message Date
allaun
c4c4e16fbf fix(infra): point default RDS host to neon server Tailscale IP 
- Redirected the default RDS_HOST/PGHOST database connection default
  to neon-64gb (100.92.88.64) across all Python shims, shell wrappers,
  and Rust probes.
- Cleaned up local defaults in rds_connect.py, sync_wiki_to_rds.py,
  dataset_ingest_rds.py, batch_embed_artifacts.py, db.rs, cache-offload.sh,
  db-consolidate.sh, backup.sh, and ene-api-wrapper.sh.

Build: 0 jobs, 0 errors (lake build)
 2026-06-18 23:28:46 -05:00
allaun
4e6bcf6f73 fix(infra): purge all default AWS RDS hosts and IAM credentials 
- Replaced database-1-instance-1.cghu8yqogqwo.us-east-1.rds.amazonaws.com
  with 'localhost' as default.
- Removed AWS IAM generate-db-auth-token CLI subprocessing and boto3
  token generation blocks from rds_connect.py, ingest_flexure_joints.py,
  pist_route_repair.py, and ene-api-wrapper.sh.
- Purged AWS DEFAULT_REGION and AWS_REGION configurations where applicable.
- Updated Rust rds_probe to use standard PG environment variables.

Build: 0 jobs, 0 errors (lake build)
 2026-06-18 23:26:56 -05:00
allaun
5f80fd8429 chore(repo): push local 768-commit branch state onto clean remote baseline 
This squashes all local history (768 commits) onto the scrubbed PR #90
baseline. Individual commits were lost during filter-repo corruption;
the working tree content is preserved intact.

Build: N/A (working tree state only)
 2026-06-15 22:46:50 -05:00
Brandon Schneider
ef7b0849d5 fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 
Security & correctness fixes from full adversarial review:

Lean (7 fixes):
- FixedPoint.lean: guard false theorem with n > 0 precondition
- QFactor.lean: remove double-scaling error in energy decrease
- AVMIsa/Step.lean: implement addSatQ16/subSatQ16 primitives
- BraidEigensolid.lean: fix crossStep second output argument swap
- SSMS.lean: complete ACI preservation proof (with rounding caveat)
- HouseholderQR.lean: add n > 0 precondition to spectral theorem

Verilog (7 fixes):
- q16_lut_core.v: fix multiply shift (16 → 32 bits)
- q16_lut_top.v: fix valid bit (0 → 1)
- cff_accelerator.v: fix SHA-256 padding (len < 448 check)
- research_stack_top.v: fix trigger aliasing (unique counters)
- Blitter6502OISC_small.v: fix address width (15 → 16 bits)
- spatial_hash_bram.v: add OOB write guard
- tmr_oepi_safety_fsm.v: fix double-increment race

WGSL (6 fixes):
- shaders.wgsl: atomicAdd for concurrent writes
- frustration_qubo.wgsl: double-buffer + CAS loop
- braid_fft.wgsl: workgroupBarrier synchronization
- burgers_scar_filter.wgsl: atomic E_bins array

Rust (9 fixes):
- thermodynamic.rs: Arc::from_raw → Arc::clone (double-free)
- thermodynamic.rs: Box::into_raw → Box (leak)
- tools/src/lib.rs: shell injection → shlex.quote
- ene-node/src/lib.rs: LRU caps, constant-time HMAC, peer caps

Python (6 fixes):
- similarity/__init__.py: pickle.load → RestrictedUnpickler
- AI-Feynman: torch.load → weights_only=True (14 calls)
- fetch_arxiv.py, fetch_s2.py: eval → ast.literal_eval
- topology.py: os.system → shutil.copy2
- SSH pipe: os.system → base64 pipe

Build: lake build 3572 jobs, 0 errors
 2026-05-31 23:38:03 -05:00
Brandon Schneider
12f6081f70 Wire ENE context into remote proof checks 2026-05-25 22:07:58 -05:00
Brandon Schneider
aa198c49d1 Stabilize ENE API and context shim 2026-05-25 21:06:46 -05:00
Brandon Schneider
de631bf1b7 WIP: accumulated changes 2026-05-25 16:24:21 -05:00
Brandon Schneider
0c502bc58a fix(rds): restore ENE storage observation probe 2026-05-20 18:53:55 -05:00
Brandon Schneider
65853c967a Fix Dependabot vulns: update sqlx 0.7->0.8.6, add ene-rds Cargo.lock 
Security fixes:
- rds_probe: bump sqlx 0.7.4 -> 0.8.6 (GHSA-xmrp-424f-vfpx MEDIUM)
  Also removes transitive rustls-webpki 0.101.7 dependency chain,
  fixing GHSA-82j2-j2ch-gfr8 (HIGH), GHSA-xgp8-3hg3-c2mh,
  GHSA-965h-392x-2mh5 (LOW) in this workspace.
- ene-rds already has rustls-webpki 0.103.13 (patched); commit its
  Cargo.lock for reproducible builds.

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
 2026-05-19 08:09:34 +00:00
Brandon Schneider
09cfe00eec Expand ene-rds Rust workspace and refine devcontainer 
- Add ene-node, ene-rds-chat, ene-rds-ephemeral, ene-rds-wiki,
  ene-storage, ene-sync crates to the ene-rds workspace
- Extend ene-rds-core with shared types and cluster messaging
- Add review doc and wiki page for the RDS Rust workspace
- Fix devcontainer: custom /etc/passwd with researcher user,
  add gcc/glibc/binutils for VS Code server compatibility,
  include util-linux, gnutar, gzip; add LD_LIBRARY_PATH
- Ignore Nix build output (`result`) and Rust artifacts

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
 2026-05-19 07:52:39 +00:00
Brandon Schneider
ac4e23dc9b Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 
- .devcontainer/Dockerfile: add PostgreSQL client libs, OpenSSL/libffi headers, gfortran/BLAS for scipy, rclone; install full Python dependency set (boto3, psycopg2-binary, fastapi, uvicorn, notion-client, httpx, pytest, numpy, scipy, etc.) in uv-managed venv; add rclone S3 gateway init script as ENTRYPOINT
- .devcontainer/devcontainer.json: switch from build to pre-built image (localhost/research
 2026-05-19 01:52:14 -05:00