import Semantics.UniversalCoupling
import Semantics.SSMS
import Lean.Data.Json

namespace Semantics.SwarmAnalysis

open Semantics.UniversalCoupling
open Semantics.SSMS
open Lean

/--
Deep resolution of domains from UniversalCoupling.
Returns structured domain information with dimensionality and description.
-/
def resolveDomains : Json :=
  let domains := [
    ("astrophysics", Json.mkObj [
      ("name", Json.str "astrophysics"),
      ("dimensionality", Json.num 3),
      ("description", Json.str "Galaxy clusters, dark matter phenomenology")
    ]),
    ("neural", Json.mkObj [
      ("name", Json.str "neural"),
      ("dimensionality", Json.num 128),
      ("description", Json.str "Spike populations, synaptic dynamics")
    ]),
    ("maritime", Json.mkObj [
      ("name", Json.str "maritime"),
      ("dimensionality", Json.num 2),
      ("description", Json.str "Vessel tracking, phantom tide signatures")
    ]),
    ("biosemiotics", Json.mkObj [
      ("name", Json.str "biosemiotics"),
      ("dimensionality", Json.num 64),
      ("description", Json.str "Sign systems in biological processes")
    ]),
    ("mereotopological", Json.mkObj [
      ("name", Json.str "mereotopological"),
      ("dimensionality", Json.num 32),
      ("description", Json.str "Part-whole relations and topological structure")
    ]),
    ("compression", Json.mkObj [
      ("name", Json.str "compression"),
      ("dimensionality", Json.num 16),
      ("description", Json.str "Shannon entropy, routing efficiency (Layer A)")
    ]),
    ("routing", Json.mkObj [
      ("name", Json.str "routing"),
      ("dimensionality", Json.num 24),
      ("description", Json.str "Coupling weights, interaction forces (Layer B)")
    ]),
    ("topology", Json.mkObj [
      ("name", Json.str "topology"),
      ("dimensionality", Json.num 48),
      ("description", Json.str "Temporal weights, holonomy, non-Euclidean distance (Layer C₁)")
    ]),
    ("braid", Json.mkObj [
      ("name", Json.str "braid"),
      ("dimensionality", Json.num 8),
      ("description", Json.str "Cosine similarity, phase accumulation (Layer C₂)")
    ]),
    ("invariants", Json.mkObj [
      ("name", Json.str "invariants"),
      ("dimensionality", Json.num 6),
      ("description", Json.str "Entropy, thermodynamic depth (Layer D)")
    ]),
    ("verification", Json.mkObj [
      ("name", Json.str "verification"),
      ("dimensionality", Json.num 4),
      ("description", Json.str "Safety checks, equilibrium (Layer E)")
    ]),
    ("control", Json.mkObj [
      ("name", Json.str "control"),
      ("dimensionality", Json.num 12),
      ("description", Json.str "Irreversibility, thermodynamic length (Layer F)")
    ]),
    ("energy", Json.mkObj [
      ("name", Json.str "energy"),
      ("dimensionality", Json.num 10),
      ("description", Json.str "Q-factor, atmospheric windows (Layer G)")
    ]),
    ("algebra", Json.mkObj [
      ("name", Json.str "algebra"),
      ("dimensionality", Json.num 32),
      ("description", Json.str "Geometric algebra, group theory (Layer H)")
    ]),
    ("encoding", Json.mkObj [
      ("name", Json.str "encoding"),
      ("dimensionality", Json.num 8),
      ("description", Json.str "Voxel keys, bit-packing (Layer I)")
    ]),
    ("dynamics", Json.mkObj [
      ("name", Json.str "dynamics"),
      ("dimensionality", Json.num 16),
      ("description", Json.str "Time evolution, manifold deformation (Layer J)")
    ]),
    ("signal", Json.mkObj [
      ("name", Json.str "signal"),
      ("dimensionality", Json.num 32),
      ("description", Json.str "DSP, FFT, bracket braid (Layer K)")
    ]),
    ("application", Json.mkObj [
      ("name", Json.str "application"),
      ("dimensionality", Json.num 6),
      ("description", Json.str "FEA, engineering models (Layer L)")
    ]),
    ("informational", Json.mkObj [
      ("name", Json.str "informational"),
      ("dimensionality", Json.num 14),
      ("description", Json.str "Information theory, channel capacity")
    ]),
    ("geometric", Json.mkObj [
      ("name", Json.str "geometric"),
      ("dimensionality", Json.num 64),
      ("description", Json.str "Hyperbolic geometry, manifold structure")
    ]),
    ("quantum", Json.mkObj [
      ("name", Json.str "quantum"),
      ("dimensionality", Json.num 8),
      ("description", Json.str "QCLEnergy, quantum mechanics")
    ])
  ]
  Json.arr (domains.map (fun d => d.snd) |>.toArray)

/--
Deep resolution of subdomains from the codebase structure.
Returns structured subdomain information with categories.
-/
def resolveSubdomains : Json :=
  let subdomains := [
    ("Physics", Json.mkObj [
      ("name", Json.str "Physics"),
      ("categories", Json.arr ([
        Json.str "ParticleDomain",
        Json.str "NBody",
        Json.str "Boundary",
        Json.str "Conservation",
        Json.str "BindPhysics",
        Json.str "Interaction",
        Json.str "Projection",
        Json.str "QCLEnergy",
        Json.str "Examples"
      ] |>.toArray))
    ]),
    ("NIICore", Json.mkObj [
      ("name", Json.str "NIICore"),
      ("categories", Json.arr ([
        Json.str "MereotopologicalSheafHypergraph",
        Json.str "MorphicTriggers"
      ] |>.toArray))
    ]),
    ("Extensions", Json.mkObj [
      ("name", Json.str "Extensions"),
      ("categories", Json.arr ([
        Json.str "BettiSwoosh",
        Json.str "BlitterPolymorphism",
        Json.str "HyperbolicStateSurface",
        Json.str "ManifoldBlit",
        Json.str "MasterEquation",
        Json.str "NKCoupling",
        Json.str "SolitonEngine"
      ] |>.toArray))
    ])
  ]
  Json.arr (subdomains.map (fun d => d.snd) |>.toArray)

/--
Deep resolution of tensor types from Bind.lean.
Returns structured tensor type information.
-/
def resolveTensorTypes : Json :=
  let tensorTypes := [
    ("identity", Json.mkObj [
      ("name", Json.str "identity"),
      ("description", Json.str "Euclidean baseline")
    ]),
    ("riemannian", Json.mkObj [
      ("name", Json.str "riemannian"),
      ("description", Json.str "Geometric manifold")
    ]),
    ("thermodynamic", Json.mkObj [
      ("name", Json.str "thermodynamic"),
      ("description", Json.str "Energy/entropy")
    ]),
    ("informational", Json.mkObj [
      ("name", Json.str "informational"),
      ("description", Json.str "Information theory")
    ]),
    ("physical", Json.mkObj [
      ("name", Json.str "physical"),
      ("description", Json.str "Physical systems")
    ]),
    ("control", Json.mkObj [
      ("name", Json.str "control"),
      ("description", Json.str "Control systems")
    ])
  ]
  Json.arr (tensorTypes.map (fun d => d.snd) |>.toArray)

/--
Complete deep resolution of domains, subdomains, and categories.
Returns comprehensive analysis as JSON.
-/
def deepCodebaseAnalysis : Json :=
  Json.mkObj [
    ("domains", resolveDomains),
    ("subdomains", resolveSubdomains),
    ("tensor_types", resolveTensorTypes),
    ("metadata", Json.mkObj [
      ("total_domains", Json.num 21),
      ("total_subdomains", Json.num 3),
      ("total_tensor_types", Json.num 6),
      ("analysis_timestamp", Json.str "2026-04-23")
    ])
  ]

/--
Manifold node structure representing codebase elements.
-/
structure ManifoldNode where
  id : String
  nodeType : String
  name : String
  dimensionality : Nat := 0
  description : String := ""
  categories : List String := []
deriving Repr, ToJson

/--
Manifold edge structure representing relationships.
-/
structure ManifoldEdge where
  id : String
  edgeType : String
  source : String
  target : String
  weight : Q1616
  description : String := ""

/--
Manifold topology metrics.
-/
structure ManifoldTopology where
  dimension : Nat
  connectedComponents : Nat
  eulerCharacteristic : Int

/--
Complete manifold structure representing codebase organization.
-/
structure Manifold where
  nodes : List ManifoldNode
  edges : List ManifoldEdge
  coordinates : List (String × Q1616 × Q1616 × Q1616)
  topology : ManifoldTopology

/--
Create manifold structure from codebase analysis.
-/
def createManifoldStructure : Manifold :=
  let domainNodes := [
    { id := "domain_astrophysics", nodeType := "domain", name := "astrophysics", dimensionality := 3, description := "Galaxy clusters, dark matter phenomenology" : ManifoldNode },
    { id := "domain_neural", nodeType := "domain", name := "neural", dimensionality := 128, description := "Spike populations, synaptic dynamics" : ManifoldNode },
    { id := "domain_maritime", nodeType := "domain", name := "maritime", dimensionality := 2, description := "Vessel tracking, phantom tide signatures" : ManifoldNode },
    { id := "domain_biosemiotics", nodeType := "domain", name := "biosemiotics", dimensionality := 64, description := "Sign systems in biological processes" : ManifoldNode },
    { id := "domain_mereotopological", nodeType := "domain", name := "mereotopological", dimensionality := 32, description := "Part-whole relations and topological structure" : ManifoldNode },
    { id := "domain_compression", nodeType := "domain", name := "compression", dimensionality := 16, description := "Shannon entropy, routing efficiency (Layer A)" : ManifoldNode },
    { id := "domain_routing", nodeType := "domain", name := "routing", dimensionality := 24, description := "Coupling weights, interaction forces (Layer B)" : ManifoldNode },
    { id := "domain_topology", nodeType := "domain", name := "topology", dimensionality := 48, description := "Temporal weights, holonomy, non-Euclidean distance (Layer C₁)" : ManifoldNode },
    { id := "domain_braid", nodeType := "domain", name := "braid", dimensionality := 8, description := "Cosine similarity, phase accumulation (Layer C₂)" : ManifoldNode },
    { id := "domain_invariants", nodeType := "domain", name := "invariants", dimensionality := 6, description := "Entropy, thermodynamic depth (Layer D)" : ManifoldNode },
    { id := "domain_verification", nodeType := "domain", name := "verification", dimensionality := 4, description := "Safety checks, equilibrium (Layer E)" : ManifoldNode },
    { id := "domain_control", nodeType := "domain", name := "control", dimensionality := 12, description := "Irreversibility, thermodynamic length (Layer F)" : ManifoldNode },
    { id := "domain_energy", nodeType := "domain", name := "energy", dimensionality := 10, description := "Q-factor, atmospheric windows (Layer G)" : ManifoldNode },
    { id := "domain_algebra", nodeType := "domain", name := "algebra", dimensionality := 32, description := "Geometric algebra, group theory (Layer H)" : ManifoldNode },
    { id := "domain_encoding", nodeType := "domain", name := "encoding", dimensionality := 8, description := "Voxel keys, bit-packing (Layer I)" : ManifoldNode },
    { id := "domain_dynamics", nodeType := "domain", name := "dynamics", dimensionality := 16, description := "Time evolution, manifold deformation (Layer J)" : ManifoldNode },
    { id := "domain_signal", nodeType := "domain", name := "signal", dimensionality := 32, description := "DSP, FFT, bracket braid (Layer K)" : ManifoldNode },
    { id := "domain_application", nodeType := "domain", name := "application", dimensionality := 6, description := "FEA, engineering models (Layer L)" : ManifoldNode },
    { id := "domain_informational", nodeType := "domain", name := "informational", dimensionality := 14, description := "Information theory, channel capacity" : ManifoldNode },
    { id := "domain_geometric", nodeType := "domain", name := "geometric", dimensionality := 64, description := "Hyperbolic geometry, manifold structure" : ManifoldNode },
    { id := "domain_quantum", nodeType := "domain", name := "quantum", dimensionality := 8, description := "QCLEnergy, quantum mechanics" : ManifoldNode }
  ]
  
  let subdomainNodes := [
    { id := "subdomain_Physics", nodeType := "subdomain", name := "Physics", categories := ["ParticleDomain", "NBody", "Boundary", "Conservation", "BindPhysics", "Interaction", "Projection", "QCLEnergy", "Examples"] : ManifoldNode },
    { id := "subdomain_NIICore", nodeType := "subdomain", name := "NIICore", categories := ["MereotopologicalSheafHypergraph", "MorphicTriggers"] : ManifoldNode },
    { id := "subdomain_Extensions", nodeType := "subdomain", name := "Extensions", categories := ["BettiSwoosh", "BlitterPolymorphism", "HyperbolicStateSurface", "ManifoldBlit", "MasterEquation", "NKCoupling", "SolitonEngine"] : ManifoldNode }
  ]
  
  let allNodes := domainNodes ++ subdomainNodes
  
  let edges := [
    { id := "edge_Physics_Extensions", edgeType := "import_dependency", source := "subdomain_Physics", target := "subdomain_Extensions", weight := Q1616.one, description := "" },
    { id := "edge_Physics_Informational", edgeType := "theoretical", source := "subdomain_Physics", target := "domain_informational", weight := Q1616.one, description := "Physical systems with information-theoretic properties" },
    { id := "edge_Topology_Algebra", edgeType := "theoretical", source := "domain_topology", target := "domain_algebra", weight := Q1616.one, description := "Topological structures with algebraic properties" },
    { id := "edge_Geometric_Thermodynamic", edgeType := "theoretical", source := "domain_geometric", target := "domain_invariants", weight := Q1616.one, description := "Geometric manifolds with thermodynamic constraints (entropy/thermodynamic depth)" }
  ]
  
  let topology := {
    dimension := 21,
    connectedComponents := 20,
    eulerCharacteristic := allNodes.length - edges.length
  : ManifoldTopology }
  
  {
    nodes := allNodes,
    edges := edges,
    coordinates := [],
    topology := topology
  : Manifold }

/--
Deep codebase analysis with manifold generation.
Returns complete analysis including manifold structure.
-/
def deepCodebaseAnalysisWithManifold : Json :=
  let analysis := deepCodebaseAnalysis
  let manifold := createManifoldStructure
  let manifoldJson := Json.mkObj [
    ("nodes", Json.num (manifold.nodes.length : Nat)),
    ("edges", Json.num (manifold.edges.length : Nat)),
    ("coordinates", Json.num (manifold.coordinates.length : Nat)),
    ("topology", Json.mkObj [
      ("dimension", Json.num manifold.topology.dimension),
      ("connectedComponents", Json.num manifold.topology.connectedComponents),
      ("eulerCharacteristic", Json.num manifold.topology.eulerCharacteristic)
    ])
  ]
  Json.mkObj [
    ("domains", analysis.getObjValD "domains"),
    ("subdomains", analysis.getObjValD "subdomains"),
    ("tensor_types", analysis.getObjValD "tensor_types"),
    ("manifold", manifoldJson),
    ("metadata", Json.mkObj [
      ("total_domains", Json.num 21),
      ("total_subdomains", Json.num 3),
      ("total_tensor_types", Json.num 6),
      ("manifold_nodes", Json.num manifold.nodes.length),
      ("manifold_edges", Json.num manifold.edges.length),
      ("manifold_dimension", Json.num manifold.topology.dimension),
      ("analysis_timestamp", Json.str "2026-04-23")
    ])
  ]

end Semantics.SwarmAnalysis