Research-Stack/6-Documentation/tiddlywiki-local/wiki/tiddlers/RNA to Peptide Shifter.tid
Brandon Schneider 0cf775c80e collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution
- Prover-Integrated Orchestration Layers (L0-L3): Goedel-Prover-V2 watchdog, BFS-Prover-V2 swarm consensus, bf4prover topology adaptation
- FAMM Verilator benchmark: uniform vs preshaped delay comparison (4.4x speedup)
- Swarm topological device prober: 11 agents probing traces, caps, delays, errors, vias, PDN
- Spec sheet puller: 10 components with key params and topological relevance
- Virtual FPGA system tests: 6/6 passed, 134K ops/s throughput
- Fixed merge conflicts in AI-Newton test_experiment.ipynb
2026-05-06 23:42:01 -05:00

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created: 20260506152500000
modified: 20260506152500000
tags: ResearchStack PIST Genomics Compression Candidate
title: RNA to Peptide Shifter
type: text/vnd.tiddlywiki
! RNA to Peptide Shifter
A code-backed biological shifter that maps RNA/codon structure toward peptide
encoding surfaces.
!! Why It Matters
It gives the biological compression lane a concrete transformation primitive
that can be tested independently of the broader PIST stack.
!! Evidence
* Source: `3-Mathematical-Models/pist_biological_polymorphic_shifter_v3_part2.py:253`
* Lane: [[Deep Mining Pass 2026-05-06]]
!! Links
* [[PIST Shifters]]
* [[Optical Codon Decoder]]
* [[Genomic Data Compression Anchor]]