Research-Stack/0-Core-Formalism/otom/data/cff/provenance-database.yml

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# Research Stack CFF-style provenance database
#
# Purpose:
# Preserve source provenance for external material imported into Research Stack
# doctrine, especially Warden/GCL surfaces. This is intentionally conservative:
# public web articles may seed design patterns or analogy surfaces, but they do
# not promote scientific, biological, neurological, or formal claims without
# independent receipts.
#
# Warden policy:
# - public web article => HOLD unless independently reviewed
# - public science synthesis => HOLD / analogy-bounded unless backed by native-domain receipts
# - neuroscience / biology language => analogy-bounded unless peer-reviewed
# - biology / biomolecular scaffold language => analogy-bounded unless claimed inside its native domain
# - medical / diet / health claims => out of GCL engineering scope unless separately reviewed in medical context
# - no adversary => no earned confidence
# - no surviving phi => no promotion
# - peer-reviewed materials / biomolecular paper => external-source anchor only; does not prove GCL operators
cff-version: "1.2.0"
message: "Research Stack source provenance records for GCL/Warden imports."
title: "Research Stack CFF Provenance Database"
version: "0.1.0"
date-released: "2026-05-02"
references:
- type: webpage
title: "Building More Truthful and Stable AI with Adversarial Convergence"
authors:
- name: "socal21st.oc"
url: "https://medium.com/@socal21st.oc/building-more-truthful-and-stable-ai-with-adversarial-convergence-66ece2dff9f6"
date-accessed: "2026-05-02"
notes: >-
Source record for the Adversarial-Convergence-GCL Warden pass. Imported
only as a public-web design-pattern source for thesis/contra/surviving-phi
synthesis review. Not peer-reviewed; not a formal proof of AI truthfulness
or stability.
- type: webpage
title: "The Neurological Basis of Adversarial Convergence and How Neuroscience Can Inform AI Design"
authors:
- name: "socal21st.oc"
url: "https://medium.com/@socal21st.oc/the-neurological-basis-of-adversarial-convergence-and-how-neuroscience-can-inform-ai-design-4c1092b60cae"
date-accessed: "2026-05-02"
notes: >-
Source record for analogy-bounded neuroscience framing around adversarial
convergence. Imported only as a reference surface for cognitive-design
inspiration and Warden pressure-testing language. Not peer-reviewed; not a
biological proof of GCL, Warden, or any literal neuroscience implementation.
- type: article
title: "Ultrathin, Stretchable, and 3D-Printable Complementary Nanotubes-Polymer Composites for Multimodal Radiation Shielding in Extreme Environments"
authors:
- name: "Flandy"
- name: "Kun Kim"
- name: "Jaehyoung Ko"
- name: "Daeun Kim"
- name: "Daekwon Lee"
- name: "Heesuk Rho"
- name: "Sang Seok Lee"
- name: "Dong Su Lee"
- name: "Se Gyu Jang"
- name: "Seokhoon Ahn"
- name: "Seung-Yeol Jeon"
- name: "Dae-Young Jeon"
- name: "Yongho Joo"
journal: "Advanced Materials"
year: 2026
volume: "38"
doi: "10.1002/adma.202513805"
url: "https://advanced.onlinelibrary.wiley.com/doi/10.1002/adma.202513805"
date-accessed: "2026-05-02"
notes: >-
Peer-reviewed external-source anchor for geometry-programmable multimodal
energy attenuation. Used to support the Phonon Path Bezier Adapter as a
design precedent for material composition plus internal architecture
changing energy residence, scattering, attenuation, and survivability. It
does not prove phonon routing, GCL compression, or any Bezier-derived
physical transport operator.
- type: article
title: "Engineering solvent resistance in semiconducting polymer films through UV-induced polydiacetylene crosslinking"
authors:
- name: "Amit K. Sur"
- name: "Audithya Nyayachavadi"
- name: "Piumi Kulatunga"
- name: "Nien-Jung Li"
- name: "Yu-Cheng Chiu"
- name: "Simon Rondeau-Gagné"
journal: "RSC Advances"
year: 2025
volume: "15"
pages: "24142-24149"
doi: "10.1039/D5RA02367J"
url: "https://pubs.rsc.org/en/content/articlelanding/2025/ra/d5ra02367j"
date-accessed: "2026-05-02"
notes: >-
Peer-reviewed external-source anchor for crosslink lock-in, solvent
resistance, morphology preservation, and multilayer survivability in the
Phonon Path Bezier Adapter. It does not prove GCL, phonon routing, or
Bezier transport.
- type: article
title: "Plasmonic Nanomachines: Creating Local Potential Gradients and Motions"
authors:
- name: "Yoonhee Kim"
- name: "Soohyun Ji"
- name: "Donghyun Choi"
- name: "Jwa-Min Nam"
journal: "Advanced Materials"
year: 2026
doi: "10.1002/adma.73247"
url: "https://doi.org/10.1002/adma.73247"
date-accessed: "2026-05-02"
notes: >-
Peer-reviewed open-access Perspective used as an external-source anchor
for optical, thermal, and chemical local potential gradients, symmetry
breaking, nanoscale motion, and Brownian/stochastic Warden constraints.
It does not prove GCL, Bezier transport, or phonon routing.
- type: article
title: "Valency-Controlled Framework Nucleic Acid Signal Amplifiers"
authors:
- name: "Qi Liu"
- name: "Zhilei Ge"
- name: "Xiuhai Mao"
- name: "Guobao Zhou"
- name: "Xiaolei Zuo"
- name: "Juwen Shen"
- name: "Jiye Shi"
- name: "Jiang Li"
- name: "Lihua Wang"
- name: "Xiaoqing Chen"
- name: "Chunhai Fan"
journal: "Angewandte Chemie International Edition"
year: 2018
volume: "57"
issue: "24"
pages: "7131-7135"
doi: "10.1002/anie.201802701"
url: "https://doi.org/10.1002/anie.201802701"
date-accessed: "2026-05-02"
notes: >-
Peer-reviewed external-source anchor for framework nucleic acid scaffold
valency, placement-controlled signal amplification, purified building
blocks, and staircase-like discrete amplification behavior. It does not
prove GCL, geometric compression, phonon routing, or Bezier transport.
- type: article
title: "Mitochondria are more than powerhouses—theyre the motherboard of the cell"
authors:
- name: "Martin Picard"
journal: "Scientific American"
year: 2025
volume: "332"
issue: "6"
pages: "50"
doi: "10.1038/scientificamerican062025-QhEeouFRPCYEr2tKQNWqM"
url: "https://www.scientificamerican.com/article/mitochondria-are-more-than-powerhouses-theyre-the-motherboard-of-the-cell/"
date-accessed: "2026-05-02"
notes: >-
Public science synthesis source used as an analogy-bounded architecture
anchor for mitochondrial collectives, mitochondrial sociality, fusion,
fission, nanotunnels, specialization, and mitochondrial information
processing systems. It does not prove GCL, autopoiesis, compression,
health claims, or any engineering operator.
x-research-stack-provenance:
schema_version: "0.1.0"
entries:
- id: "medium-socal21st-adversarial-convergence-truthful-stable-ai"
type: "online_article"
title: "Building More Truthful and Stable AI with Adversarial Convergence"
source_url: "https://medium.com/@socal21st.oc/building-more-truthful-and-stable-ai-with-adversarial-convergence-66ece2dff9f6"
source_account: "socal21st.oc"
accessed: "2026-05-02"
source_class: "public_web_article"
peer_reviewed: false
claim_state: "HOLD"
authority_scope: "design_pattern_only"
imported_as:
- "Adversarial-Convergence-GCL Warden pass"
- "thesis / contra-surface / surviving-phi / synthesis audit pattern"
- "LLM operator-review pressure test"
allowed_use: >-
Use as a conceptual source for dialectical Warden pressure testing of
GCL claims, DeepSeek review prompts, and LLM-generated compression
operators.
blocked_use: >-
Do not treat as proof of model truthfulness, formal verification,
empirical convergence, or guaranteed AI stability.
delta_phi_gamma_lambda_binding:
delta: "claim residue introduced or removed by adversarial pressure"
phi: "claim/invariant/concession that survives both positive and contra readings"
gamma: "counterargument pressure, evidence conflict, and decision stakes"
lambda: "analysis scale: sentence, claim, document, module, theory, corpus"
warden_notes:
- "No adversary, no earned confidence."
- "No surviving phi, no promotion."
- "Requires independent receipts before promotion beyond design-pattern status."
- id: "medium-socal21st-neurological-basis-adversarial-convergence"
type: "online_article"
title: "The Neurological Basis of Adversarial Convergence and How Neuroscience Can Inform AI Design"
source_url: "https://medium.com/@socal21st.oc/the-neurological-basis-of-adversarial-convergence-and-how-neuroscience-can-inform-ai-design-4c1092b60cae"
source_account: "socal21st.oc"
accessed: "2026-05-02"
source_class: "public_web_article"
peer_reviewed: false
claim_state: "HOLD"
authority_scope: "analogy_bound_neuroscience_reference_surface"
imported_as:
- "adversarial-convergence neuroscience analogy"
- "source receipt requiring biological-overclaim guard"
- "cognitive-design inspiration surface"
allowed_use: >-
Use only as analogy-bounded reference material for Warden interrogation
loops, adversarial pressure, and cognitive design inspiration.
blocked_use: >-
Do not treat as biological proof of GCL, proof of adversarial convergence,
proof of model stability, or evidence that Research Stack literally
implements neuroscience.
warden_notes:
- "Any biological or neurological language derived from this source requires a biological-overclaim guard."
- "Requires peer-reviewed external receipts before any empirical neuroscience claim promotion."
- "Keep imported language structural: analogy source, not biological authority."
- id: "flandy-2026-complementary-nanotubes-polymer-multimodal-shielding"
type: "peer_reviewed_article"
title: "Ultrathin, Stretchable, and 3D-Printable Complementary Nanotubes-Polymer Composites for Multimodal Radiation Shielding in Extreme Environments"
source_url: "https://advanced.onlinelibrary.wiley.com/doi/10.1002/adma.202513805"
doi: "10.1002/adma.202513805"
journal: "Advanced Materials"
year: 2026
volume: "38"
article_id: "e13805"
accessed: "2026-05-02"
source_class: "peer_reviewed_materials_science_article"
peer_reviewed: true
claim_state: "HOLD"
authority_scope: "external_source_anchor_for_geometry_programmable_energy_response"
authors:
- "Flandy"
- "Kun Kim"
- "Jaehyoung Ko"
- "Daeun Kim"
- "Daekwon Lee"
- "Heesuk Rho"
- "Sang Seok Lee"
- "Dong Su Lee"
- "Se Gyu Jang"
- "Seokhoon Ahn"
- "Seung-Yeol Jeon"
- "Dae-Young Jeon"
- "Yongho Joo"
imported_as:
- "Phonon Path Bezier Adapter external source anchor"
- "geometry-programmable multimodal shielding precedent"
- "DIW architecture / nanotube-interface / material-response reference surface"
allowed_use: >-
Use as an external materials-science precedent showing that composition,
nanotube interface geometry, and 3D-printed macro-architecture can
affect shielding performance, scattering, attenuation, mechanical
resilience, and extreme-environment survivability.
blocked_use: >-
Do not treat as proof of GCL, proof of geometric compression, proof of
phonon routing, proof of Bezier transport paths, or validation of any
simulation result without separate simulator receipts and baselines.
extracted_findings:
- "SWCNT/BNNT neat composites achieved EMI shielding effectiveness exceeding 50 dB."
- "Neat composites reported neutron attenuation coefficient of 1.27 mm^-1."
- "Polymer composites reached up to 23 dB EMI shielding at sub-millimeter thickness."
- "Direct ink writing enabled honeycomb and other programmable architectures."
- "Honeycomb-patterned composites showed about 10-15% higher shielding effectiveness than plain-patterned counterparts at equivalent thickness."
- "Performance was tested under cyclic strain and thermal extremes from -196 C to 250 C."
delta_phi_gamma_lambda_binding:
delta: "attenuation loss, leakage, scattering residue, path deviation, or failed shielding function"
phi: "preserved transport/shielding invariant such as bounded attenuation, target arrival, or retained multimodal shielding behavior"
gamma: "incident EMI/neutron/thermal/mechanical forcing pressure, shock intensity, strain, or simulator load"
lambda: "scale band from nanotube interface to printed filament, honeycomb cell, device layer, and full shield"
warden_notes:
- "Peer-reviewed external source, but still external to GCL proof authority."
- "Phonon-path claims require separate acoustic/thermal/material simulator receipts."
- "Rendered Bezier paths are projection surfaces, not physical proof."
- "Use as a geometry-dependent energy-response precedent, not a direct phonon-routing validation."
- id: "sur-2025-uv-induced-polydiacetylene-crosslinking-solvent-resistance"
type: "peer_reviewed_article"
title: "Engineering solvent resistance in semiconducting polymer films through UV-induced polydiacetylene crosslinking"
source_url: "https://pubs.rsc.org/en/content/articlelanding/2025/ra/d5ra02367j"
doi: "10.1039/D5RA02367J"
journal: "RSC Advances"
year: 2025
volume: "15"
pages: "24142-24149"
accessed: "2026-05-02"
source_class: "peer_reviewed_materials_science_article"
peer_reviewed: true
claim_state: "HOLD"
authority_scope: "external_source_anchor_for_crosslink_lock_in_and_multilayer_stability"
authors:
- "Amit K. Sur"
- "Audithya Nyayachavadi"
- "Piumi Kulatunga"
- "Nien-Jung Li"
- "Yu-Cheng Chiu"
- "Simon Rondeau-Gagné"
imported_as:
- "Phonon Path Bezier Adapter crosslink lock-in anchor"
- "UV-induced PDA morphology-preservation reference surface"
- "multilayer solvent-resistance stability precedent"
allowed_use: >-
Use as an external materials-science precedent showing that UV-induced
polydiacetylene crosslinking can improve solvent resistance, preserve
film morphology, and support sequential/multilayer processing.
blocked_use: >-
Do not treat as proof of GCL, proof of geometric compression, proof of
phonon routing, proof of Bezier transport paths, or validation of any
simulation result without separate simulator receipts and baselines.
extracted_findings:
- "Functionalized DPP-carbazole conjugated copolymer with 1,3-butadiyne groups."
- "UV-induced topochemical polymerization formed PDA crosslinks."
- "Raman spectroscopy confirmed PDA formation."
- "AFM/GIWAXS indicated film morphology was preserved after crosslinking."
- "Crosslinked films showed improved nanomechanical properties and solvent resistance."
delta_phi_gamma_lambda_binding:
delta: "morphology drift, solvent damage, path displacement, layer dissolution, or mechanical-integrity loss"
phi: "preserved morphology, retained film/path identity, retained electronic/transport function, or multilayer-safe state"
gamma: "UV exposure, solvent challenge, sequential deposition pressure, mechanical stress, or post-processing perturbation"
lambda: "scale band from molecular crosslink to polymer chain, thin-film domain, printed layer, and multilayer stack"
warden_notes:
- "Peer-reviewed external source, but still external to GCL proof authority."
- "Lock-in claims require stabilization receipts and before/after morphology metrics."
- "Stable film morphology is not automatically a valid Bezier transport path."
- "Use as crosslink stabilization precedent, not direct phonon-routing validation."
- id: "kim-2026-plasmonic-nanomachines-local-potential-gradients"
type: "peer_reviewed_article"
title: "Plasmonic Nanomachines: Creating Local Potential Gradients and Motions"
source_url: "https://doi.org/10.1002/adma.73247"
doi: "10.1002/adma.73247"
journal: "Advanced Materials"
year: 2026
article_id: "e73247"
accessed: "2026-05-02"
source_class: "peer_reviewed_perspective_article"
peer_reviewed: true
open_access: true
claim_state: "HOLD"
authority_scope: "external_source_anchor_for_local_potential_gradients_and_nanoscale_actuation"
authors:
- "Yoonhee Kim"
- "Soohyun Ji"
- "Donghyun Choi"
- "Jwa-Min Nam"
imported_as:
- "Phonon Path Bezier Adapter local-potential-gradient anchor"
- "optical / thermal / chemical gradient-driven force reference surface"
- "nanoscale Brownian/stochastic Warden constraint source"
allowed_use: >-
Use as an external Perspective anchoring local optical, thermal, and
chemical potential gradients as mechanisms for nanoscale force and
motion, including symmetry breaking, rectilinear motion, rotation,
twisting, and Brownian-dominated validation constraints.
blocked_use: >-
Do not treat as proof of GCL, proof of geometric compression, proof of
phonon routing, proof of Bezier transport paths, or validation of any
simulation result without separate simulator receipts and baselines.
extracted_findings:
- "Plasmonic nanostructures transduce light into localized optical, thermal, and chemical gradients."
- "Geometric and energetic asymmetries provide directional forces for translational and rotational motions."
- "Figure 1 separates optical, thermal, and chemical potential gradients as force-generation modalities."
- "The article highlights rectilinear, rotational, and twisting motion classes."
- "The nanoscale regime is Brownian-dominated and requires Pe/Stokes-style checks for directional claims."
- "Table 1 summarizes force scales, materials, morphologies, and motion modes for plasmonic micro/nanomachines."
delta_phi_gamma_lambda_binding:
delta: "failed motion, Brownian loss, path deviation, unbounded local heating, gradient-mode confusion, or unstable actuation"
phi: "preserved directional motion, controlled actuation, retained local-gradient response, or measurable probe response"
gamma: "optical intensity, thermal gradient, chemical potential gradient, viscous drag, Brownian stochasticity, or actuation load"
lambda: "scale band from nanoparticle interface to nanomachine body, microstructure, device layer, and inspection surface"
warden_notes:
- "Peer-reviewed open-access Perspective, but still external to GCL proof authority."
- "Gradient-driven actuation claims require explicit gradient type and Brownian/stochastic checks at nanoscale lambda."
- "Rendered Bezier paths are projection surfaces, not nanomachines."
- "Use as local-potential-gradient precedent, not direct phonon-routing validation."
- id: "liu-2018-valency-controlled-framework-nucleic-acid-signal-amplifiers"
type: "peer_reviewed_article"
title: "Valency-Controlled Framework Nucleic Acid Signal Amplifiers"
source_url: "https://doi.org/10.1002/anie.201802701"
doi: "10.1002/anie.201802701"
journal: "Angewandte Chemie International Edition"
year: 2018
volume: "57"
issue: "24"
pages: "7131-7135"
accessed: "2026-05-02"
source_class: "peer_reviewed_biomolecular_nanotechnology_article"
peer_reviewed: true
claim_state: "HOLD"
authority_scope: "external_source_anchor_for_framework_nucleic_acid_valency_and_signal_amplification"
authors:
- "Qi Liu"
- "Zhilei Ge"
- "Xiuhai Mao"
- "Guobao Zhou"
- "Xiaolei Zuo"
- "Juwen Shen"
- "Jiye Shi"
- "Jiang Li"
- "Lihua Wang"
- "Xiaoqing Chen"
- "Chunhai Fan"
imported_as:
- "Phonon Path Bezier Adapter framework-valency anchor"
- "tetrahedral DNA / framework nucleic acid scaffold reference surface"
- "discrete signal-count and staircase amplification precedent"
allowed_use: >-
Use as an external biomolecular-nanotechnology precedent showing that
framework nucleic acid scaffolds can encode controlled numbers of
addressable binding sites and produce discrete, valency-dependent signal
amplification after purification and aggregation control.
blocked_use: >-
Do not treat as proof of GCL, proof of geometric compression, proof of
phonon routing, proof of Bezier transport paths, or evidence that GCL is
literal biology. Biomolecular claims remain native-domain only.
extracted_findings:
- "T1 and T3 self-hybridization were identified by native PAGE and NUPACK free-energy estimates."
- "Placeholder strands improved TDN-T1 and TDN-T3 construction, with productivities over 55% after strategy refinement."
- "SEC purification produced mono-TDN, di-TDN, and tri-TDN FNA scaffolds with high-purity building blocks."
- "AFM verified designed mono-, di-, and tri-TDN morphology with minimal aggregation."
- "Defined-valent assemblies produced staircase-like migration patterns for DNA, AuNP, and avidin/protein loading."
- "Valency-controlled avidin-HRP signal amplification produced monotonic/staircase-like electrochemical responses."
- "The sensor reported roughly 131-fold current increase at 50 nM ALU115 over blank in the supporting information."
delta_phi_gamma_lambda_binding:
delta: "uncontrolled valency, self-hybridization residue, aggregation, signal-count error, scaffold misassembly, or amplification nonlinearity"
phi: "preserved scaffold geometry, declared binding-site count, controlled signal valency, and monotonic/staircase amplification behavior"
gamma: "hybridization pressure, analyte concentration, avidin-HRP enzymatic amplification, electrochemical readout pressure, or scaffold assembly stress"
lambda: "scale band from oligonucleotide sequence to TDN vertex, mono-/di-/tri-TDN scaffold, biomolecule/AuNP conjugate, and sensor-level readout"
warden_notes:
- "Peer-reviewed native-domain biomolecular source, but still external to GCL proof authority."
- "Biology language must remain analogy-bounded outside the native FNA/sensor context."
- "Valency claims require declared binding sites, purification/aggregation receipts, and observed signal-unit counts."
- "Use as controlled scaffold-valency precedent, not direct compression or phonon-routing validation."
- id: "picard-2025-social-lives-of-mitochondria-mips"
type: "public_science_article"
title: "Mitochondria are more than powerhouses—theyre the motherboard of the cell"
source_url: "https://www.scientificamerican.com/article/mitochondria-are-more-than-powerhouses-theyre-the-motherboard-of-the-cell/"
doi: "10.1038/scientificamerican062025-QhEeouFRPCYEr2tKQNWqM"
journal: "Scientific American"
year: 2025
volume: "332"
issue: "6"
pages: "50"
accessed: "2026-05-02"
source_class: "public_science_synthesis_article"
peer_reviewed: false
claim_state: "HOLD"
authority_scope: "analogy_bound_source_anchor_for_distributed_bioenergetic_information_processing"
authors:
- "Martin Picard"
imported_as:
- "Mitochondrial Collective / MIPS Bridge source anchor"
- "distributed energy-information processing analogy"
- "autopoietic sensing / signaling / repair inspiration surface"
allowed_use: >-
Use as a public-science synthesis source for analogy-bounded concepts:
mitochondrial collectives, mito-mito junctions, cristae alignment,
fusion/fission, nanotunnels, mtDNA sharing, intercellular mitochondrial
transfer, specialization, and mitochondrial information-processing
systems.
blocked_use: >-
Do not treat as proof of GCL, proof of compression, proof of autopoiesis,
proof of engineering correctness, or medical guidance. Do not import
diet, disease, mental-health, or treatment claims into GCL engineering
docs except as out-of-scope source context.
extracted_findings:
- "Mitochondria are described as dynamic organelles that move, stretch, morph, touch, communicate, and specialize."
- "The source describes mito-mito junctions and cristae alignment across interacting mitochondria."
- "The source discusses mitochondrial fusion/fission, mtDNA sharing, nanotunnels, and intercellular mitochondrial transfer."
- "The source frames mitochondria as social organelles and as a mitochondrial information-processing system."
- "The source uses a motherboard metaphor rather than a simple battery/powerhouse metaphor."
delta_phi_gamma_lambda_binding:
delta: "energy leak, membrane-potential mismatch, failed fusion, stress residue, uncontrolled signaling, malformed repair, or abstraction drift"
phi: "preserved energy-flow invariant, stable information transfer, repairable state continuity, bounded stress response, or collective viability"
gamma: "stress load, metabolic signal pressure, hormonal/environmental forcing, mutation-load analogy, or simulator pressure"
lambda: "scale band from crista, mitochondrion, mito-mito junction, nanotunnel, cell, tissue, organ, organism, to GCL inspection surface"
warden_notes:
- "Public science synthesis source, not peer-reviewed proof authority."
- "Biology language must remain analogy-bounded outside native mitochondrial biology."
- "Medical, diet, disease, or treatment claims are out of scope for GCL engineering docs."
- "Use as distributed bioenergetic information-processing precedent, not direct compression validation."