Research-Stack/system-packages-optional-science.txt
2026-05-12 00:21:34 -05:00

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# Optional system packages for science toolbelt adapters.
#
# These are command-line tools or heavyweight native stacks that Python
# requirements cannot reliably install. Names are Debian/Ubuntu-style package
# names where available; distro packages vary.
# Genetics / bioinformatics
samtools
bcftools
minimap2
# Formal methods / algebra
cvc5
z3
gap
sagemath
# Compression and receipt payload baselines
zstd
# Visualization / data inspection
graphviz
paraview
# Chemistry / materials native helpers
openbabel