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Brandon Schneider 4d715908fd docs: full documentation + roadmap refresh (2026-05-19)
- CHANGELOG: add 2026-05-09 through 2026-05-19 entry covering Lean
  hardening, storage stack, 20+ new gates, physics RG suite
- ROADMAP: update layer model (746 modules, 3529 jobs, 0 errors);
  mark eigensolid_convergence proven; add section 12 (Infrastructure
  & Data Layer) covering ENE RDS, Garage S3, storage agent, devcontainer
- TODO_MAP: add B11 (eigensolid convergence, DONE), Phase I (infra),
  Phase J (adversarial gates); rename old Phase I to Phase K
- README: update Lean module/build counts; add Infrastructure table
- ARCHITECTURE: update L0 row; add repository structure rows for
  ene-rds, storage, devcontainer; add sections 11-13 (Storage &
  Persistence Layer, ENE RDS Workspace, Braid Eigensolid Compressor)
- CONCEPTS: add Braid Eigensolid Compressor, Constrained Agent
  Framework, and Garage S3 Storage Stack concept entries
- 4-Infrastructure/README: rewrite to reflect ENE RDS Rust workspace,
  restic/Garage/rclone storage stack, storage agent, GPU dispatch,
  adversarial harnesses

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Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-05-19 09:12:16 +00:00
.agents/plugins Consolidate research stack updates 2026-05-05 21:09:48 -05:00
.consolidation-manifests initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
.devcontainer Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
.github integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
.vscode Document portable setup and review receipts 2026-05-11 23:01:51 -05:00
0-Core-Formalism Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
1-Distributed-Systems integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
2-Search-Space Refresh whoogle dotenv advisory manifest 2026-05-11 23:27:19 -05:00
3-Mathematical-Models integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
4-Infrastructure docs: full documentation + roadmap refresh (2026-05-19) 2026-05-19 09:12:16 +00:00
5-Applications Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
6-Documentation docs: full documentation + roadmap refresh (2026-05-19) 2026-05-19 09:12:16 +00:00
6-Kernel-Shim Consolidate research stack updates 2026-05-05 21:09:48 -05:00
adjacent_coprime_classification_2026-05-13 integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
ai-math-discovery-systems fix: correct Q16_16 add/sub signed/unsigned bug, add missing lemmas 2026-05-18 00:31:44 -05:00
codebase-memory-receipt-2026-05-13 integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
desi_model_projection_receipt_2026-05-13 integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
deterministic_build_receipt_2026-05-13 integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
docs Harden optional science toolbelt probe 2026-05-12 05:12:46 -05:00
hooks initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
info initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
plugins/substack-connector Consolidate research stack updates 2026-05-05 21:09:48 -05:00
scripts/qc-flag Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
shared-data Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
workspace-config initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
.codeiumignore Add workspace load-shedding ignores 2026-05-11 15:53:59 -05:00
.gitattributes Add ENE research topic candidates, compression-core, notion-native-tauri, linear-native-tauri 2026-05-04 19:08:20 -05:00
.gitignore Expand ene-rds Rust workspace and refine devcontainer 2026-05-19 07:52:39 +00:00
.gitmodules Fix external repository references 2026-05-05 21:15:26 -05:00
.mcp.json Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
.pre-commit-config.yaml math-first: fix pre-commit evidence-gate filter bug, polish schema + validator 2026-05-12 04:40:20 +00:00
.python-version Track DeepSeek review receipts and CAD setup tasks 2026-05-11 22:41:44 -05:00
Agda_Test.agda collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
Agda_Test.agdai collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
AGENTS.md Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
ARCHITECTURE.md docs: full documentation + roadmap refresh (2026-05-19) 2026-05-19 09:12:16 +00:00
CHANGELOG.md docs: full documentation + roadmap refresh (2026-05-19) 2026-05-19 09:12:16 +00:00
changes.zip integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
CITATION.cff Track HCMMR sources and ignore generated mirrors 2026-05-11 21:53:32 -05:00
claims.yaml Merge math-first tooling guardrails 2026-05-11 23:34:48 -05:00
CONCEPTS.md docs: full documentation + roadmap refresh (2026-05-19) 2026-05-19 09:12:16 +00:00
config initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
Containerfile integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
cupfox-config.nix Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
description initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
desmos_reynolds_bridge.txt chore: preserve working tree before secure wipe 2026-05-13 17:36:02 -05:00
flake.lock Expand ene-rds Rust workspace and refine devcontainer 2026-05-19 07:52:39 +00:00
flake.nix Add OpenGL/X11, pkg-config, and openssl to devcontainer flake 2026-05-19 08:05:40 +00:00
GETTING_STARTED.md Refactor provenance sources for open witness backends 2026-05-12 05:57:04 -05:00
HEAD initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
lean_hardware_checker_summary.json Consolidate research stack updates 2026-05-05 21:09:48 -05:00
LICENSE initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MEMORY.md integrate infrastructure config, axiom cleanup, and documentation updates 2026-05-17 12:03:19 -05:00
Modelfile integrate infrastructure config, axiom cleanup, and documentation updates 2026-05-17 12:03:19 -05:00
NOTICE Track HCMMR sources and ignore generated mirrors 2026-05-11 21:53:32 -05:00
package-lock.json Fix Dependabot vulns: update sqlx 0.7->0.8.6, add ene-rds Cargo.lock 2026-05-19 08:09:34 +00:00
package.json Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
PROJECT_MAP.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
pyrightconfig.json wip: refined investigation script for Erdős–Gyárfás conjecture 2026-05-08 14:50:03 -05:00
README.md docs: full documentation + roadmap refresh (2026-05-19) 2026-05-19 09:12:16 +00:00
requirements-optional-science.txt Add optional science toolbelt probe 2026-05-12 00:21:34 -05:00
result-devcontainer Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
run-container.sh integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
system-packages-optional-science.txt Harden optional science toolbelt probe 2026-05-12 05:12:46 -05:00
test.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
THIRD_PARTY_NOTICES.md collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
TODO_MAP.md docs: full documentation + roadmap refresh (2026-05-19) 2026-05-19 09:12:16 +00:00

Research-Stack (OTOM)

Heretical Science Engineering

Ultra-low power, zero-decimal data routing and compression.

If you just stumbled across this repository, you might see words like "Topological State Machine" and "Manifold Points" and assume this is dense, academic magic. It isn't.

This project is actually built on a very simple, grounded idea: Modern computing is incredibly wasteful.

Right now, running AI or compressing massive datasets requires giant, power-hungry GPUs because they rely on Floating-Point Math (heavy decimals like 3.14159...). We prove that you don't need decimals. You can map complex data (like the grammar of the English language) into structural shapes, and navigate them using only simple integers (whole numbers).

Because we only use addition, subtraction, multiplication, and modulo, this system can run on a $15 blank-slate microchip (an FPGA) instead of a massive server farm.

🛠️ How we know it works (Zero Guesswork)

We do not guess that our integer math works. We prove it. The core of this project is written in Lean 4, a strict mathematical theorem prover. If our logic has a flaw, the code physically will not compile. We currently have 746 verified Lean modules across a 3,529-job deterministic build (0 errors) securing this engine.

Python, Rust, and Verilog only exist in this repository to act as "dumb pipes" to feed data into our proven mathematical core.


📁 Repository Structure (By Goal)

Everything is numbered so you know exactly what depends on what.

Folder What it actually is (Plain English)
0-Core-Formalism/ The Brain. Lean 4 code. The mathematically proven integer arithmetic. This is the source of truth.
1-Distributed-Systems/ The Network. Code for making multiple computers talk to each other to share the workload.
2-Search-Space/ The Navigator. Algorithms that search through our data shapes to find the best routes.
3-Mathematical-Models/ The Library. Where we store our databases of equations and compressed English grammar shapes.
4-Infrastructure/ The Drivers. Code that physically talks to the hardware, GPUs, and APIs.
5-Applications/ The Executables. Python scripts that run the system end-to-end. (These are just shims connecting data to our Lean 4 Brain).
6-Documentation/ The Manual. Where you'll find plain-English explanations and our theoretical papers.
shared-data/ Raw data, cache, and exported files.

📖 Where to start?

If you are new here, read these two files first:

  1. Explanation for Humans - A translation guide for our technical jargon.
  2. Calculator-Plain Math - Proof that every complex concept we use can be calculated on a high-school graphing calculator.

🚀 Quick Start

# 1. Compile the mathematically proven core (Takes ~1-2 minutes)
cd "0-Core-Formalism/lean/Semantics"
lake build

# 2. Run the English Manifold Builder (Compresses English via grammar shapes)
cd "../../.."
python3 5-Applications/scripts/redpajama_english_manifold.py

⚖️ The One Rule for Contributors

Lean is the source of truth. If you add logic, it goes in 0-Core-Formalism/lean/Semantics/ and must be mathematically proven. Python scripts may not contain complex math, branching logic, or cost functions. Python is just the delivery boy for Lean.


🗄️ Infrastructure (Current)

Component Description
4-Infrastructure/infra/ene-rds/ Rust workspace (8 crates) replacing the Python RDS stack — Axum HTTP API, PostgreSQL, Ollama embeddings
4-Infrastructure/storage/ restic + Garage S3 (v2.3.0, Tailscale mesh) + rclone storage stack with automated observer agent
.devcontainer/ NixOS hermetic devcontainer with OpenGL/X11, Lean, Python science stack, MCP servers (Notion + AWS)
4-Infrastructure/infra/credential_server.py Credential gateway with apiProvider service kind and cupfox routing

Research Stack — All Rights Reserved