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Brandon Schneider 5f9e809ae7 Add EntropyCollapseDetector kernel and arithmetic spec 
- Add EntropyCollapseDetector.lean: executable checks for triple condition
  (braid crossings, σ_q/Hurst, D_q/Rényi D_2) with dense_rank tie handling
- Add Manifest.lean: imports EntropyCollapseDetector into HCMMR
- Add ArithmeticSpec_Corrected_2026-05-11.md: verified arithmetic constants
  K=21 for W=8 (~5% FPR), σ_c=0.4, D_c=0.7 (heuristic)

Arithmetic self-verified in Python:
- Braid crossings: 12 (K=7 non-selective, K=21 selective)
- σ_q = H = 0.032 (anti-persistent oscillating series)
- D_2 = 0.514 (moderate concentration)
- D_c=1.2 invalid for 1D Rényi D_2; corrected to 0.7

Prime gap re-test with K=21 shows signal mostly dies:
- 1M primes: 86,565 fires at K=7 (artifact) vs 38 at K>21 (genuine)
- Detector now selective but potentially too conservative

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-05-11 21:44:47 -05:00
..
avmr Add q-desic wormhole throat equation update 2026-05-05 08:39:39 -05:00
biology Add plant-stress ultrasound to BioPhonon translation equations 2026-05-05 12:37:39 -05:00
distilled Add EntropyCollapseDetector kernel and arithmetic spec 2026-05-11 21:44:47 -05:00
formal_verification collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
gcl initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
geometry collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
geoweird/agent_coordination/lean_port_swarm initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
implementation initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
issues initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
neuroscience initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
nlab@23592e36ca initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
papers initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
physics Consolidate research stack updates 2026-05-05 21:09:48 -05:00
plans initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
protocols initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
provenance initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
recovered Consolidate research stack updates 2026-05-05 21:09:48 -05:00
research collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
roadmaps Add RRC projection receipts and roadmap mirrors 2026-05-08 14:50:03 -05:00
safety initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
semantics Consolidate research stack updates 2026-05-05 21:09:48 -05:00
specs docs: add LLM refinement protocol 2026-05-07 08:21:35 -05:00
speculative-materials collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
AGENTS.md Document legacy recovery trigger 2026-05-11 15:11:18 -05:00
AGENTS_COMPLIANCE_AUDIT.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
BEGINNERS_MAP.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
BRAIN_AS_MANIFOLD.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
charged_mass_braid_sieve.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
CITATION.cff collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
CLAIM_STATE_AUDIT_2026-05-05.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
codon_peptide_pipeline_summary.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
codon_rl_v2_summary.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
CompressionBenchmarkPlan.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
deepseek_v4_math_combined.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
Documents1.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ENE_EQUATIONS.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ENE_RESEARCH_TOPIC_CANDIDATES.md Add ENE research topic candidates, compression-core, notion-native-tauri, linear-native-tauri 2026-05-04 19:08:20 -05:00
ENE_SCHEMA.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
EQUATION_FOREST_INDEX.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
EXPLORATION_PLAN.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
EXTRACTED_MODELS_CATEGORIZATION.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
FIELD_EQUATION_COMPARISON.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
FILENAME_ALIGNMENT_AUDIT_2026-04-29.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
FIRST_PRINCIPLES_DAG.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
FOREST_TOPOLOGY_MAP.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
FPGA_IMPLEMENTATION_REVIEW.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
FPGA_MORPHIC_SCALAR_OPTIMIZED_SPEC.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
FPGA_MORPHIC_SCALAR_SPEC.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
FPGA_WARDEN_NODE_SPEC.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
GaugeStorageModels.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
GENETIC_BENCHMARK_REVIEW_RESPONSE.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
GENETIC_GROUNDUP_FIXES_SUMMARY.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
GLOSSARY.md collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
HUTTER_SIGNAL_PROMPT.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
IMPLEMENTATION_ATTACK_ANALYSIS.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
LOCAL_SETUP_REFLOW.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MATH_CORE.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MATH_MODEL_MAP.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MATH_MODEL_MAP.tsv initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MATH_MODEL_MAP_BY_DOMAIN.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MATH_MODEL_MAP_classified.tsv initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MCP_NOTION_LINEAR_SETUP.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
METAPROBE_APPROACH.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MILKSHAKE_MANIFESTO.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MORPHIC_DSP_CONCEPT.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MORPHIC_DSP_LAYER0_PRIMITIVE.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MORPHIC_DSP_RECONFIGURATION_SPEC.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MORPHIC_TOPOLOGY_MATH_CATALOG.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
neural_encoding_schemes_index.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
nic_cpu_probe_report.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
NOTION_SETUP.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
OBSIDIAN_INTEGRATION.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
OTOM_V1_PAPER_STRUCTURE_AND_NEXT_GEN_SIMULATOR.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
PHI_CENTER_REVAMP.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
PLATFORM_AGNOSTIC_IMPLEMENTATION_GUIDE.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
PYTHON_TO_LEAN_MIGRATION_PLAN.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
S3C_MANIFOLD_GEOMETRY.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
SAFETY_GATED_VERIFICATION_PLAN.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
SKEPTICISM_GRADIENT_REASSESSMENT_2026-04-29.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
SYNTHETIC_GENETIC_CODING_RESEARCH.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
tinyssh_test_result.svg initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
UNIFIED_AREA_MAPPING.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
UNIFIED_JSONL_SCHEMA.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
VISION_NORTH_STAR.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
VOCABULARY_LOCK.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
WEIRD_CONCEPTS_GLOSSARY.md collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
WORKTREE_POLISH_2026-04-29.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00