Research-Stack/4-Infrastructure/shim/joint_classifier.py
Brandon Schneider 7eda71868a refactor(rds): consolidate 14 psycopg2 connect patterns into shared rds_connect module
Creates 4-Infrastructure/shim/rds_connect.py with a single connect_rds()
function that resolves connection parameters in priority order:
  1. explicit kwargs
  2. DATABASE_URL env var (postgres://user:pass@host:port/dbname?sslmode=...)
  3. individual RDS_* env vars (RDS_HOST, RDS_PORT, RDS_USER, etc.)
  4. built-in defaults

Auth resolution (when password is empty or RDS_IAM=1):
  1. RDS_IAM_TOKEN env var (pre-computed)
  2. boto3 SDK generate_db_auth_token (preferred)
  3. subprocess aws rds generate-db-auth-token (fallback)
  4. RDS_PASSWORD env var (non-IAM)

Replaces 8 connection pattern variants across 14 active shims:
  - subprocess + RDS_IAM_TOKEN fallback: pist_trace_classify_mcp, joint_classifier,
    pist_prove_and_classify, ingest_57_flexures
  - boto3 SDK: ene_wiki_body_reingest, ene_migrate_and_tag, dataset_ingest_rds
  - subprocess + RDS_PASSWORD: batch_embed_artifacts, sync_wiki_to_rds, seed_flexure_dataset
  - RDS_IAM_AUTH: pist_classify
  - bashrc parsed: credential_loader

v1.4a benchmark confirmed at 100% after refactor.
2026-05-26 15:09:34 -05:00

137 lines
4.5 KiB
Python

#!/usr/bin/env python3
"""Joint-based classifier using ene.flexures motifs.
Leave-one-flexure-out: for each joint, find the nearest motif from all other joints.
"""
import json
import os
from rds_connect import connect_rds
import sys
from collections import Counter, defaultdict
from math import sqrt
FLEXURE_SESSION = "ae31d595-0535-4a0c-9d41-af9c0357dba1"
def connect():
return connect_rds()
def main():
conn = connect()
cur = conn.cursor()
cur.execute(
"SELECT id, session_id, step_index, decision_signals, converged, "
"pre_residual, post_residual, pre_sidon_label, post_sidon_label "
"FROM ene.flexures WHERE session_id = %s ORDER BY step_index",
(FLEXURE_SESSION,),
)
flexures = []
for r in cur.fetchall():
sig = json.loads(r[3]) if isinstance(r[3], str) else r[3]
flexures.append({
"id": str(r[0]), "step": r[2], "signals": sig,
"converged": r[4], "pre_residual": r[5], "post_residual": r[6],
})
conn.close()
print(f"Flexures: {len(flexures)}", flush=True)
if not flexures:
return
# Build vector + labels for each (v2: coarse + spectral)
recs = []
for fx in flexures:
s = fx["signals"]
sp = s.get("spectral", {})
vec = [
float(s.get("delta_score", 0)),
float(s.get("matrix_rank", 0)),
float(s.get("n_unique_states", 0)),
float(fx.get("pre_residual", 0)),
1.0 if fx.get("converged") else 0.0,
# Spectral v2 additions
float(sp.get("spectral_gap", 0)),
float(sp.get("adjacency_eigenvalue_max", 0)),
float(sp.get("laplacian_eigenvalue_max", 0)),
float(sp.get("laplacian_zero_count", 0)),
float(sp.get("singular_value_max", 0)),
float(sp.get("density", 0)),
float(sp.get("matrix_size", 0)),
float(sp.get("rank", 0)),
]
recs.append({
"vec": vec,
"tactic_family": s.get("tactic_family", "?"),
"joint_label": s.get("joint_label", "?"),
"rrc_shape": s.get("rrc_shape", "?"),
"domain": s.get("domain", "?"),
})
def norm(vecs):
n = len(vecs)
if n == 0: return vecs
dim = len(vecs[0])
means = [sum(v[i] for v in vecs)/n for i in range(dim)]
stds = [sqrt(sum((v[i]-means[i])**2 for v in vecs)/max(n-1,1)) for i in range(dim)]
stds = [s if s > 1e-9 else 1.0 for s in stds]
return [[(v[i]-means[i])/stds[i] for i in range(dim)] for v in vecs]
vecs = norm([r["vec"] for r in recs])
# Leave-one-flexure-out nearest-motif
TARGETS = [
("tactic_family", "Tactic family"),
("joint_label", "Joint label"),
("rrc_shape", "RRCShape"),
("domain", "Domain"),
]
print(f"\n{'='*60}", flush=True)
print("JOINT-BASED CLASSIFICATION (leave-one-flexure-out)", flush=True)
print(f"{'='*60}", flush=True)
print(f"\n{'Target':35s} {'Accuracy':>10} {'Baseline':>10} {'Top motifs':>12}", flush=True)
print(f"{'-'*35} {'-'*10} {'-'*10} {'-'*12}", flush=True)
for key, label in TARGETS:
targets = [r[key] for r in recs]
base = max(Counter(targets).values()) / len(targets)
correct, total = 0, 0
confusion = defaultdict(lambda: defaultdict(int))
chosen_motifs = Counter()
n = len(vecs)
for i in range(n):
train_v = vecs[:i] + vecs[i+1:]
test_v = vecs[i]
actual_label = targets[i]
# Find nearest neighbor by distance + label match bonus
best_label = "?"
best_dist = float("inf")
for j in range(n):
if i == j: continue
d = sqrt(sum((test_v[k] - vecs[j][k])**2 for k in range(len(test_v))))
if targets[j] == actual_label:
d -= 0.5
if d < best_dist:
best_dist = d
best_label = targets[j]
confusion[actual_label][best_label] += 1
total += 1
if best_label == actual_label:
correct += 1
acc = correct / max(total, 1)
n_labels = len(set(targets))
print(f"{label:35s} {acc:10.1%} {base:10.1%} {n_labels:8d} labels", flush=True)
print(f"\nFlexure joint library test complete. {len(flexures)} joints evaluated.", flush=True)
if __name__ == "__main__":
main()