mirror of
https://github.com/allaunthefox/Research-Stack.git
synced 2026-07-31 03:05:21 +00:00
Creates 4-Infrastructure/shim/rds_connect.py with a single connect_rds()
function that resolves connection parameters in priority order:
1. explicit kwargs
2. DATABASE_URL env var (postgres://user:pass@host:port/dbname?sslmode=...)
3. individual RDS_* env vars (RDS_HOST, RDS_PORT, RDS_USER, etc.)
4. built-in defaults
Auth resolution (when password is empty or RDS_IAM=1):
1. RDS_IAM_TOKEN env var (pre-computed)
2. boto3 SDK generate_db_auth_token (preferred)
3. subprocess aws rds generate-db-auth-token (fallback)
4. RDS_PASSWORD env var (non-IAM)
Replaces 8 connection pattern variants across 14 active shims:
- subprocess + RDS_IAM_TOKEN fallback: pist_trace_classify_mcp, joint_classifier,
pist_prove_and_classify, ingest_57_flexures
- boto3 SDK: ene_wiki_body_reingest, ene_migrate_and_tag, dataset_ingest_rds
- subprocess + RDS_PASSWORD: batch_embed_artifacts, sync_wiki_to_rds, seed_flexure_dataset
- RDS_IAM_AUTH: pist_classify
- bashrc parsed: credential_loader
v1.4a benchmark confirmed at 100% after refactor.
150 lines
4.5 KiB
Python
150 lines
4.5 KiB
Python
#!/usr/bin/env python3
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"""Sync filesystem wiki Markdown files to ENE RDS and emit a JSON receipt."""
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from __future__ import annotations
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import argparse
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import hashlib
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import json
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import os
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import sys
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from datetime import datetime, timezone
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from pathlib import Path
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from typing import Any
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from rds_connect import connect_rds
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STACK_ROOT = Path(os.environ.get("STACK_ROOT", "/home/allaun/Research Stack"))
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WIKI_ROOT = Path(os.environ.get("WIKI_ROOT", str(STACK_ROOT / "6-Documentation" / "wiki")))
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HOST = os.environ.get("RDS_HOST", "database-1-instance-1.cghu8yqogqwo.us-east-1.rds.amazonaws.com")
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DB = os.environ.get("RDS_DB", os.environ.get("RDS_DBNAME", "postgres"))
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def utc_now() -> str:
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return datetime.now(timezone.utc).isoformat()
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def sha256_text(text: str) -> str:
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return hashlib.sha256(text.encode("utf-8")).hexdigest()
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def get_conn():
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return connect_rds()
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def title_from_slug(slug: str) -> str:
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return slug.replace("-", " ").replace("_", " ").title()
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def iter_markdown_files(root: Path) -> list[Path]:
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if not root.exists():
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raise FileNotFoundError(f"wiki root does not exist: {root}")
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return sorted(path for path in root.rglob("*.md") if path.is_file())
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def sync_files(conn, files: list[Path], dry_run: bool) -> tuple[int, int, list[dict[str, str]]]:
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indexed = 0
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skipped = 0
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failures: list[dict[str, str]] = []
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cur = conn.cursor()
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try:
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for fpath in files:
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try:
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rel = fpath.relative_to(WIKI_ROOT)
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slug = rel.with_suffix("").as_posix()
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title = title_from_slug(slug)
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content = fpath.read_text(encoding="utf-8", errors="replace")
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cur.execute("SELECT content FROM ene.wiki_pages WHERE slug = %s", (slug,))
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row = cur.fetchone()
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if row and row[0] == content:
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skipped += 1
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continue
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if not dry_run:
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cur.execute(
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"""INSERT INTO ene.wiki_pages (slug, title, content, updated_at)
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VALUES (%s, %s, %s, %s)
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ON CONFLICT (slug) DO UPDATE SET
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title = EXCLUDED.title,
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content = EXCLUDED.content,
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updated_at = EXCLUDED.updated_at""",
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(slug, title, content, utc_now()),
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)
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indexed += 1
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except Exception as exc: # noqa: BLE001 - receipt records per-file failure.
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failures.append({"path": str(fpath), "error": str(exc)})
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if dry_run:
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conn.rollback()
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else:
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conn.commit()
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finally:
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cur.close()
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return indexed, skipped, failures
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def build_receipt(
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*,
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indexed: int,
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skipped: int,
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failures: list[dict[str, str]],
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dry_run: bool,
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file_count: int,
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) -> dict[str, Any]:
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receipt: dict[str, Any] = {
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"schema": "ene_wiki_to_rds_sync_receipt_v1",
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"version": "1.0.0",
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"generated_at_utc": utc_now(),
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"dry_run": dry_run,
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"wiki_root": str(WIKI_ROOT),
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"rds_host": HOST,
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"rds_db": DB,
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"file_count": file_count,
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"indexed_count": indexed,
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"skipped_count": skipped,
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"failed_count": len(failures),
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"failures": failures[:20],
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}
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preimage = {k: v for k, v in receipt.items() if k != "receipt_hash"}
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receipt["receipt_hash"] = sha256_text(json.dumps(preimage, sort_keys=True))
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return receipt
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def write_receipt(receipt: dict[str, Any], path: str | None) -> None:
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encoded = json.dumps(receipt, sort_keys=True)
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print(encoded)
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if path:
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out = Path(path)
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out.parent.mkdir(parents=True, exist_ok=True)
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out.write_text(encoded + "\n", encoding="utf-8")
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def parse_args() -> argparse.Namespace:
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parser = argparse.ArgumentParser(description=__doc__)
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parser.add_argument("--dry-run", action="store_true")
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parser.add_argument("--receipt-out")
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return parser.parse_args()
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def main() -> int:
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args = parse_args()
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files = iter_markdown_files(WIKI_ROOT)
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conn = get_conn()
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try:
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indexed, skipped, failures = sync_files(conn, files, args.dry_run)
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finally:
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conn.close()
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receipt = build_receipt(
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indexed=indexed,
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skipped=skipped,
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failures=failures,
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dry_run=args.dry_run,
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file_count=len(files),
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)
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write_receipt(receipt, args.receipt_out)
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return 0 if not failures else 2
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if __name__ == "__main__":
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sys.exit(main())
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