Brandon Schneider aba1fba7ad fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems ... Security & correctness fixes from full adversarial review: Lean (7 fixes): - FixedPoint.lean: guard false theorem with n > 0 precondition - QFactor.lean: remove double-scaling error in energy decrease - AVMIsa/Step.lean: implement addSatQ16/subSatQ16 primitives - BraidEigensolid.lean: fix crossStep second output argument swap - SSMS.lean: complete ACI preservation proof (with rounding caveat) - HouseholderQR.lean: add n > 0 precondition to spectral theorem Verilog (7 fixes): - q16_lut_core.v: fix multiply shift (16 → 32 bits) - q16_lut_top.v: fix valid bit (0 → 1) - cff_accelerator.v: fix SHA-256 padding (len < 448 check) - research_stack_top.v: fix trigger aliasing (unique counters) - Blitter6502OISC_small.v: fix address width (15 → 16 bits) - spatial_hash_bram.v: add OOB write guard - tmr_oepi_safety_fsm.v: fix double-increment race WGSL (6 fixes): - shaders.wgsl: atomicAdd for concurrent writes - frustration_qubo.wgsl: double-buffer + CAS loop - braid_fft.wgsl: workgroupBarrier synchronization - burgers_scar_filter.wgsl: atomic E_bins array Rust (9 fixes): - thermodynamic.rs: Arc::from_raw → Arc::clone (double-free) - thermodynamic.rs: Box::into_raw → Box (leak) - tools/src/lib.rs: shell injection → shlex.quote - ene-node/src/lib.rs: LRU caps, constant-time HMAC, peer caps Python (6 fixes): - similarity/__init__.py: pickle.load → RestrictedUnpickler - AI-Feynman: torch.load → weights_only=True (14 calls) - fetch_arxiv.py, fetch_s2.py: eval → ast.literal_eval - topology.py: os.system → shutil.copy2 - SSH pipe: os.system → base64 pipe Build: lake build 3572 jobs, 0 errors		2026-05-31 23:38:03 -05:00
..
build_metamanifold	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
emergency_boot	feat(hardware): Emergency Boot Witness reference implementation	2026-05-27 23:00:39 -05:00
sparkle	fix(infra): configure sparkle build script to support system path fallback	2026-05-28 15:03:17 -05:00
abc.history	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
adaptive_fabric_connector.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
batch_lean_checker.py	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
batch_lean_checker.sh	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
batch_lean_checker_parallel.py	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
Blitter6502OISC_small.v	fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems	2026-05-31 23:38:03 -05:00
blitter_memory_map.v	feat: HiGHS integration, scale space solver, adjugate matrix, FPGA voltage/BRAM modules	2026-05-28 15:42:14 -05:00
braid_serial.v	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
braid_serial_main.cpp	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
braided_field_genetic_sim.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
braided_field_sim.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
bram_partial_lut.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
build_cff_accelerator.sh	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
build_cff_scanner.sh	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
build_dvi_texel.sh	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
build_fractal.sh	feat: fractal dimension — DBC algorithm (Python + FPGA)	2026-05-29 20:45:21 -05:00
build_hutter_symbol_surface.sh	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
build_loopback.sh	feat(infra): compile and SRAM-flash UART beacon with reset bypass	2026-05-28 14:10:46 -05:00
build_metamanifold_prover.sh	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
build_metamanifold_prover_himbaechel.sh	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
build_metamanifold_prover_yosys.sh	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
build_q16_lut.sh	feat: wire pipeline into VCN substrate + FPGA bitstream for Q16 LUT	2026-05-28 15:02:13 -05:00
build_research_stack.sh	feat: spatial hash grid — GPU-style particle physics (Python + FPGA)	2026-05-30 01:25:19 -05:00
build_rrc_q16_accel.sh	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
build_uart_beacon.sh	Stage stack solidification source slice	2026-05-11 22:08:10 -05:00
cff_accelerator.json	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
cff_accelerator.v	fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems	2026-05-31 23:38:03 -05:00
cff_invariant_scanner.fs	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
cff_invariant_scanner.json	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
cff_invariant_scanner.v	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
cff_invariant_scanner_pnr.json	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
cmyk_adaptive_router.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
dvi_texel_transmitter.json	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
dvi_texel_transmitter.v	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
ee_stress_requirements.txt	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
ee_virtual_stress_probe.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
famm_verilator_bench.v	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
FAMM_VERILATOR_SETUP.md	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
fractal_box_counter.v	feat: fractal dimension — DBC algorithm (Python + FPGA)	2026-05-29 20:45:21 -05:00
fractal_fd_selector.v	feat: fractal dimension — DBC algorithm (Python + FPGA)	2026-05-29 20:45:21 -05:00
goertzel_filter_bank.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
gpu_fpga_distributed_checker.py	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
gpu_fpga_verification_report.json	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
hamiltonian_primitives_sim.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
highs_pivot_accelerator.v	feat: HiGHS integration, scale space solver, adjugate matrix, FPGA voltage/BRAM modules	2026-05-28 15:42:14 -05:00
hutter_symbol_substitution_core.v	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
integrated_prover_pipeline.py	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
integrated_prover_report.json	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
jupiter_phi_self_recovery_probe.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
lean_dependency_dag.dot	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
lean_dependency_dag_parallel.dot	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
lean_dependency_dag_parallel.svg	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
lean_hardware_checker.py	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
Makefile.metamanifold	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
mechanical_cycle.vcd	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
mechanical_cycle_harness.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
mechanical_cycle_sim	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
metamanifold.fs	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
metamanifold.json	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
metamanifold_pnr.json	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
metamanifold_prover_gowin.cst	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
metamanifold_prover_gowin.v	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
metamanifold_prover_gowin_minimal.cst	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
metamanifold_prover_gowin_simple.cst	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
metamanifold_prover_minimal.cst	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
metamanifold_prover_minimal.v	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
metamanifold_prover_tb.cpp	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
metamanifold_prover_test.cst	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
metamanifold_prover_test.v	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
metamanifold_prover_trace.vcd	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
metaprobe_stress_sensor.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
mode_multiplexed_dsp_slice.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
moldable_transfer_sim.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
morphic_scalar_fpga.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
morphic_scalar_fpga_optimized.cst	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
morphic_scalar_fpga_optimized.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
morphic_scalar_s3c_integrated.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
nii_surface_driver.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
noise_stability_sim.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
pbacs_1bit_transport_core.v	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
polariton_mimo_spectrum_probe.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
polaron_polariton_braid_probe.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
probe_serial_ports.py	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
q16_lut_core.json	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
q16_lut_core.v	fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems	2026-05-31 23:38:03 -05:00
q16_lut_top.fs	feat: wire pipeline into VCN substrate + FPGA bitstream for Q16 LUT	2026-05-28 15:02:13 -05:00
q16_lut_top.json	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
q16_lut_top.v	fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems	2026-05-31 23:38:03 -05:00
q16_lut_top_pnr.json	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
research_stack_tangnano9k.cst	feat: unified FPGA bitstream for Tang Nano 9K — BUILD SUCCESSFUL	2026-05-28 16:32:05 -05:00
research_stack_top.fs	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
research_stack_top.json	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
research_stack_top.v	fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems	2026-05-31 23:38:03 -05:00
research_stack_top_pnr.json	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
rgflow_codebase_reconfiguration_review.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
run_famm_verilator_bench.sh	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
run_metamanifold_sim.sh	Consolidate research stack updates	2026-05-05 21:09:48 -05:00
s3c_manifold_fpga.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
scale_space_bram.v	feat: HiGHS integration, scale space solver, adjugate matrix, FPGA voltage/BRAM modules	2026-05-28 15:42:14 -05:00
SIGNAL_ENCODERS_DOCUMENTATION.md	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
spatial_hash_bram.v	fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems	2026-05-31 23:38:03 -05:00
spatial_hash_selector.v	feat: spatial hash grid — GPU-style particle physics (Python + FPGA)	2026-05-30 01:25:19 -05:00
spectral_encoder.v	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
spectral_encoder_simple_spice.cir	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
spectral_encoder_spice.cir	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
spectral_encoder_tb.cpp	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_12_to_4_reduction.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_absurd_genetics_stress.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_connectome_reconfiguration_runner.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_dna_substitution_alignment.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_extension_failure_probe.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_force_regime_model.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_genus3_residual_boat.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_lagrangian_eigen_probe.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_lagrangian_exact_average.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_lagrangian_underverse_closure.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_projection_sensitivity_probe.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_residual_accounting_probe.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_rgflow_prune_probe.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_signed_axis_graph.graphml	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_signed_axis_graph.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_underverse_manifold_shape.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
standard_model_w_conservation_guard.py	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
tangnano9k_dvi.cst	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
tangnano9k_hutter_symbol_surface.v	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
tangnano9k_q16_lut.cst	feat: wire pipeline into VCN substrate + FPGA bitstream for Q16 LUT	2026-05-28 15:02:13 -05:00
tangnano9k_research_stack.cst	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
tangnano9k_rrc_q16_accel.v	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
tangnano9k_uart_beacon.v	feat(infra): compile and SRAM-flash UART beacon with reset bypass	2026-05-28 14:10:46 -05:00
tangnano9k_uart_loopback.cst	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
tangnano9k_uart_loopback.fs	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
tangnano9k_uart_loopback.json	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
tangnano9k_uart_loopback.v	feat(infra): compile and SRAM-flash UART beacon with reset bypass	2026-05-28 14:10:46 -05:00
tangnano9k_uart_loopback_pnr.json	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
tangnano9k_uart_swapped.cst	Stage stack solidification source slice	2026-05-11 22:08:10 -05:00
tb_famm_bench.cpp	collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution	2026-05-06 23:42:01 -05:00
tb_hutter_symbol_substitution_core.v	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
tb_metamanifold_prover.cpp	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
tb_pbacs_1bit_transport_core.v	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
tb_uart_test.v	fix: UART bug (retransmit) + auto-start + LED heartbeat + sim verification	2026-05-28 21:42:11 -05:00
test_fpga.py	test: FPGA test suite — 12/12 pass	2026-05-28 19:57:45 -05:00
tmr_oepi_safety_fsm.v	fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems	2026-05-31 23:38:03 -05:00
topological_residual_engine.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
TOSLINK_EDGE_CARRIER_TEMPLATE.kicad_mod	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
toslink_revA_kicad_template_notes.md	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
uart_rx.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
uart_test.cst	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
uart_test.fs	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
uart_test.json	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
uart_test.v	fix: UART bug (retransmit) + auto-start + LED heartbeat + sim verification	2026-05-28 21:42:11 -05:00
uart_test_pnr.json	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
uart_test_synth.json	chore: commit accumulated working tree changes	2026-05-30 00:10:02 -05:00
uart_tx.v	initial: sovereign research stack (consolidated, weightless, and lfs-optimized)	2026-05-04 18:11:36 -05:00
voltage_mode_controller.v	feat: HiGHS integration, scale space solver, adjugate matrix, FPGA voltage/BRAM modules	2026-05-28 15:42:14 -05:00
wavefront_emitter.v	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00
wavefront_emitter_tb.cpp	Track remaining source and documentation inventory	2026-05-11 22:18:31 -05:00