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Research-Stack/5-Applications
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Brandon Schneider aba1fba7ad fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 
Security & correctness fixes from full adversarial review:

Lean (7 fixes):
- FixedPoint.lean: guard false theorem with n > 0 precondition
- QFactor.lean: remove double-scaling error in energy decrease
- AVMIsa/Step.lean: implement addSatQ16/subSatQ16 primitives
- BraidEigensolid.lean: fix crossStep second output argument swap
- SSMS.lean: complete ACI preservation proof (with rounding caveat)
- HouseholderQR.lean: add n > 0 precondition to spectral theorem

Verilog (7 fixes):
- q16_lut_core.v: fix multiply shift (16 → 32 bits)
- q16_lut_top.v: fix valid bit (0 → 1)
- cff_accelerator.v: fix SHA-256 padding (len < 448 check)
- research_stack_top.v: fix trigger aliasing (unique counters)
- Blitter6502OISC_small.v: fix address width (15 → 16 bits)
- spatial_hash_bram.v: add OOB write guard
- tmr_oepi_safety_fsm.v: fix double-increment race

WGSL (6 fixes):
- shaders.wgsl: atomicAdd for concurrent writes
- frustration_qubo.wgsl: double-buffer + CAS loop
- braid_fft.wgsl: workgroupBarrier synchronization
- burgers_scar_filter.wgsl: atomic E_bins array

Rust (9 fixes):
- thermodynamic.rs: Arc::from_raw → Arc::clone (double-free)
- thermodynamic.rs: Box::into_raw → Box (leak)
- tools/src/lib.rs: shell injection → shlex.quote
- ene-node/src/lib.rs: LRU caps, constant-time HMAC, peer caps

Python (6 fixes):
- similarity/__init__.py: pickle.load → RestrictedUnpickler
- AI-Feynman: torch.load → weights_only=True (14 calls)
- fetch_arxiv.py, fetch_s2.py: eval → ast.literal_eval
- topology.py: os.system → shutil.copy2
- SSH pipe: os.system → base64 pipe

Build: lake build 3572 jobs, 0 errors
2026-05-31 23:38:03 -05:00
..
AppFlowy-Cloud Add EC2 recovery backup: NixOS config, AppFlowy compose/env template, credential server bootstrap, recovery guide 2026-05-18 10:44:23 -05:00
audio-dsp Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
audit initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
caddy-edge feat(infra): WebRTC bridge + Caddy edge config + Tailscale Funnel 2026-05-28 13:11:53 -05:00
cff Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
cluster-dashboard feat(infra): cluster dashboard + VCN shim indentation fix 2026-05-28 01:13:54 -05:00
compression-core Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
dashboard fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 2026-05-31 23:38:03 -05:00
hutter_prize initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
linear-native-tauri Bump the linear-tauri-cargo-minor-patch group 2026-05-20 23:03:27 -05:00
nodupe fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 2026-05-31 23:38:03 -05:00
notion-native-tauri Bump the notion-tauri-cargo-minor-patch group 2026-05-20 23:03:27 -05:00
out/verilog feat: 12 math enhancements — Q16 LUT, braid VCN encoder, FPGA Verilog, FFT, crypto 2026-05-28 14:49:26 -05:00
parquet_compressor Bump dashmap 2026-05-20 23:03:27 -05:00
pist-scripts initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
plugins/substack-connector Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
scripts fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 2026-05-31 23:38:03 -05:00
teleport-kanban fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 2026-05-31 23:38:03 -05:00
tests initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
text-to-cad docs(agents): project-wide AGENTS.md audit — cross-refs, baseline, contracts 2026-05-26 22:34:46 -05:00
tools-scripts archive: remove experimental tools-scripts, scripts, and shim probes 2026-05-25 18:14:31 -05:00
webrtc-bridge feat(infra): WebRTC bridge + Caddy edge config + Tailscale Funnel 2026-05-28 13:11:53 -05:00
finance_manager.py chore: preserve working tree before secure wipe 2026-05-13 17:36:02 -05:00
README.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
requirements_swarm_api.txt initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
visualizer_service.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00

README.md

5-Applications

Purpose: End-to-end pipelines, integration tests, automation scripts, benchmarks, audit.

Depends on: 0 through 4

Contents (Target)

Source Destination
5-Applications/scripts/ 5-Applications/scripts/
5-Applications/tests/ 5-Applications/tests/
5-Applications/out/ 5-Applications/out/
5-Applications/audit/ 5-Applications/audit/

Scripts

  • build_manifold_graphml.py
  • export_manifold_to_obsidian.py
  • hot_swap_daemon.py
  • hot_swap_manager.py

Pipeline

  1. Generate provably hard question (Builder: ADD clock)
  2. Route via OmnidirectionalInterface (Lean)
  3. Execute via DomainModelIntegration (Lean → Python shim)
  4. Store in Google Drive topological storage (Warden: SUBTRACT clock)
  5. Hardware triumvirate integration (Judge: PAUSE clock)