mirror of
https://github.com/allaunthefox/Research-Stack.git
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allaun
1f7ec15f12
Adds logViscosityRatio, log_viscosity_monotone, and ν_eff_monotone to Semantics/NKHodgeFAMM.lean section 6b. The adaptive viscosity law ν_eff = ν₀*(1+μ) is multiplicative in ν₀ and additive in scar density μ; taking λ = log(ν_eff/ν₀) = log(1+μ) turns the multiplicative feedback into an additive coordinate. This gives nlinarith a direct handle on viscosity monotonicity and connects the module to Kritchevsky's "Everything Is Logarithms" framing (SilverSight CITATION.cff). Also marks a few pre-existing unused variables with underscores to silence the linter. Build: 8316 jobs, 0 errors (lake build Semantics.NKHodgeFAMM)
354 lines
12 KiB
Python
354 lines
12 KiB
Python
#!/usr/bin/env python3
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# INFRA:DEAD rds -- AWS RDS is gone. Any file referencing rds_connect.py or this hostname is stale and must be ported.
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# /// script
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# requires-python = ">=3.10"
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# dependencies = [
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# "boto3",
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# "psycopg2-binary",
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# ]
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# ///
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"""
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ENE Wiki Body Re-ingestion Shim.
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All 278 ene.wiki_revisions rows currently have text = "" or "[object Promise]"
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(a JavaScript async bug from the original ingestion pipeline).
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This shim finds real content for each wiki page slug from the following
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sources, in priority order:
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1. knowledge.tiddlywiki_pages — exact title match (body field)
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2. Local filesystem — for "X → Y" title pattern, read the
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actual file or directory listing from
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/home/allaun/Research Stack/X/Y
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3. knowledge.documents — Notion content match by title (if content != '')
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4. ene.packages description — description field (fallback)
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5. Synthesized stub — title + slug as minimal placeholder
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Updates ene.wiki_revisions.text in-place (only rows where text is empty or
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"[object Promise]") and writes a receipt to ingestion.receipts.
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Run with:
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cd "/home/allaun/Research Stack"
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uv run 4-Infrastructure/shim/ene_wiki_body_reingest.py
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"""
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from __future__ import annotations
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import hashlib
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import json
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import logging
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import os
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import uuid
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from pathlib import Path
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from typing import Optional
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import psycopg2
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import psycopg2.extras
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from rds_connect import connect_rds
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logging.basicConfig(level=logging.INFO, format="%(asctime)s %(levelname)s %(message)s")
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log = logging.getLogger("ene_wiki_body_reingest")
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# ---------------------------------------------------------------------------
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# RDS connection
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# ---------------------------------------------------------------------------
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RESEARCH_STACK = Path(os.environ.get("RESEARCH_STACK", "/home/allaun/Research Stack"))
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# Maximum bytes to read from a single local file (avoid ingesting huge blobs)
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MAX_FILE_BYTES = 64 * 1024 # 64 KB
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def connect() -> psycopg2.extensions.connection:
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return connect_rds()
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# ---------------------------------------------------------------------------
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# Source 1: TiddlyWiki pages (knowledge.tiddlywiki_pages)
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# ---------------------------------------------------------------------------
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def load_tiddlywiki_index(conn) -> dict[str, str]:
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"""Return {lower(title): body} for all tiddlywiki pages with non-empty body."""
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idx: dict[str, str] = {}
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with conn.cursor() as cur:
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cur.execute(
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"SELECT title, body FROM knowledge.tiddlywiki_pages WHERE body IS NOT NULL AND body != ''"
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)
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for title, body in cur.fetchall():
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idx[title.lower().strip()] = body
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log.info("TiddlyWiki index loaded: %d pages", len(idx))
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return idx
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# ---------------------------------------------------------------------------
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# Source 2: Local filesystem
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# ---------------------------------------------------------------------------
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def title_to_fs_path(title: str) -> Optional[Path]:
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"""'A → B' wiki title → /home/allaun/Research Stack/A/B."""
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if " → " not in title:
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return None
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parent, child = title.split(" → ", 1)
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return RESEARCH_STACK / parent.strip() / child.strip()
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def read_fs_content(path: Path) -> Optional[str]:
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"""
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Read content from a filesystem path:
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- If it's a file, return its text (truncated to MAX_FILE_BYTES).
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- If it's a directory, return a compact directory listing with file sizes.
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- If it doesn't exist, return None.
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"""
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if not path.exists():
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return None
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if path.is_file():
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try:
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raw = path.read_bytes()[:MAX_FILE_BYTES]
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text = raw.decode("utf-8", errors="replace")
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suffix = f"\n\n[truncated at {MAX_FILE_BYTES // 1024} KB]" if len(raw) == MAX_FILE_BYTES else ""
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return text + suffix
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except Exception as exc:
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log.debug("Could not read file %s: %s", path, exc)
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return None
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if path.is_dir():
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lines = [f"# {path.name}/\n"]
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try:
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entries = sorted(path.iterdir())
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except PermissionError:
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return None
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files = [e for e in entries if e.is_file()]
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dirs = [e for e in entries if e.is_dir()]
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if dirs:
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lines.append("## Subdirectories")
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for d in dirs[:50]:
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lines.append(f"- `{d.name}/`")
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if files:
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lines.append("\n## Files")
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for f in files[:100]:
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try:
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sz = f.stat().st_size
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lines.append(f"- `{f.name}` ({sz:,} bytes)")
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except OSError:
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lines.append(f"- `{f.name}`")
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return "\n".join(lines)
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return None
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# ---------------------------------------------------------------------------
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# Source 3: Notion documents (knowledge.documents)
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# ---------------------------------------------------------------------------
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def load_notion_index(conn) -> dict[str, str]:
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"""Return {lower(title): content} for Notion docs with non-empty content."""
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idx: dict[str, str] = {}
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with conn.cursor() as cur:
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cur.execute(
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"SELECT title, content FROM knowledge.documents "
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"WHERE source='notion' AND content IS NOT NULL AND content != ''"
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)
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for title, content in cur.fetchall():
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key = title.lower().strip()
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# Keep the longest content if there are duplicates
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if key not in idx or len(content) > len(idx[key]):
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idx[key] = content
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log.info("Notion document index loaded: %d entries", len(idx))
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return idx
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# ---------------------------------------------------------------------------
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# Source 4: ENE packages description
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# ---------------------------------------------------------------------------
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def load_packages_index(conn) -> dict[str, str]:
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"""Return {slug: description} from ene.packages for wiki/* packages."""
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idx: dict[str, str] = {}
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with conn.cursor() as cur:
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cur.execute(
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"SELECT pkg, description FROM ene.packages "
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"WHERE pkg LIKE 'ene/wiki/%' AND description IS NOT NULL AND description != ''"
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)
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for pkg, description in cur.fetchall():
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slug = pkg.removeprefix("ene/wiki/")
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idx[slug] = description
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log.info("ENE packages index loaded: %d wiki entries", len(idx))
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return idx
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# ---------------------------------------------------------------------------
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# Content resolution
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# ---------------------------------------------------------------------------
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def resolve_content(
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slug: str,
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title: str,
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tiddly_idx: dict[str, str],
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notion_idx: dict[str, str],
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pkg_idx: dict[str, str],
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) -> tuple[str, str]:
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"""
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Return (content, source_tag) for the given wiki revision.
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source_tag is one of: tiddlywiki, filesystem, notion, package, generated
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"""
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title_lower = title.lower().strip()
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# --- Source 1: TiddlyWiki exact match ---
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if title_lower in tiddly_idx:
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return tiddly_idx[title_lower], "tiddlywiki"
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# --- Source 2: Filesystem (for "X → Y" titles) ---
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fs_path = title_to_fs_path(title)
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if fs_path is not None:
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fs_content = read_fs_content(fs_path)
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if fs_content:
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return fs_content, "filesystem"
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# --- Source 3: Notion documents ---
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if title_lower in notion_idx:
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return notion_idx[title_lower], "notion"
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# --- Source 4: ENE packages description ---
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if slug in pkg_idx:
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desc = pkg_idx[slug]
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return f"# {title}\n\n{desc}", "package"
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# --- Source 5: Generated stub ---
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stub = (
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f"# {title}\n\n"
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f"*Stub page — no source content found during re-ingestion.*\n\n"
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f"**Slug:** `{slug}`\n"
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)
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return stub, "generated"
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# ---------------------------------------------------------------------------
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# Receipt helper
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# ---------------------------------------------------------------------------
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def record_receipt(conn, status: str, metadata: dict, error: str | None = None) -> None:
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with conn.cursor() as cur:
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cur.execute(
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"""
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INSERT INTO ingestion.receipts
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(receipt_id, shim_name, status, metadata, error_detail, ran_at)
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VALUES (%s, %s, %s, %s, %s, now())
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""",
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(
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str(uuid.uuid4()),
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"ene_wiki_body_reingest",
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status,
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json.dumps(metadata),
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error,
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),
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)
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conn.commit()
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# ---------------------------------------------------------------------------
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# Main
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# ---------------------------------------------------------------------------
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def main() -> None:
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log.info("Connecting to RDS…")
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conn = connect()
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conn.autocommit = False
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# Build source indexes (read-only queries, no transaction needed)
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log.info("Building source indexes…")
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tiddly_idx = load_tiddlywiki_index(conn)
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notion_idx = load_notion_index(conn)
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pkg_idx = load_packages_index(conn)
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# Fetch all wiki revisions (we update ALL of them to fix the [object Promise] bug too)
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log.info("Fetching all wiki revisions…")
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with conn.cursor(cursor_factory=psycopg2.extras.RealDictCursor) as cur:
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cur.execute(
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"SELECT slug, revision, title, text FROM ene.wiki_revisions ORDER BY slug, revision"
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)
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revisions = cur.fetchall()
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log.info("Total revisions to process: %d", len(revisions))
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# Stats counters
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stats: dict[str, int] = {
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"total": len(revisions),
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"updated": 0,
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"skipped_already_good": 0,
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"tiddlywiki": 0,
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"filesystem": 0,
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"notion": 0,
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"package": 0,
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"generated": 0,
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}
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BATCH = 50
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batch_count = 0
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for rev in revisions:
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slug = rev["slug"]
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revision = rev["revision"]
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title = rev["title"]
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current = rev["text"] or ""
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# Decide whether this row needs updating:
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# Bad if it's empty string OR the literal "[object Promise]" (including repeated newlines of it)
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is_bad = (
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current.strip() == ""
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or current.strip() == "[object Promise]"
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or (current.replace("[object Promise]", "").replace("\n", "").strip() == "")
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)
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if not is_bad:
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stats["skipped_already_good"] += 1
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continue
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# Resolve content from sources
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content, source_tag = resolve_content(slug, title, tiddly_idx, notion_idx, pkg_idx)
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stats[source_tag] += 1
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stats["updated"] += 1
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with conn.cursor() as cur:
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cur.execute(
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"UPDATE ene.wiki_revisions SET text = %s WHERE slug = %s AND revision = %s",
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(content, slug, revision),
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)
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batch_count += 1
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if batch_count % BATCH == 0:
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conn.commit()
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log.info(
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" Committed %d/%d revisions updated so far…",
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stats["updated"],
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stats["total"],
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)
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conn.commit()
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log.info("Final commit done.")
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log.info(
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"Summary: total=%d updated=%d skipped=%d | "
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"tiddlywiki=%d filesystem=%d notion=%d package=%d generated=%d",
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stats["total"],
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stats["updated"],
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stats["skipped_already_good"],
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stats["tiddlywiki"],
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stats["filesystem"],
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stats["notion"],
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stats["package"],
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stats["generated"],
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)
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record_receipt(conn, "success", {
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"pages_updated": stats["updated"],
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"skipped_already_good": stats["skipped_already_good"],
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"sources": {
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"tiddlywiki": stats["tiddlywiki"],
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"filesystem": stats["filesystem"],
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"notion": stats["notion"],
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"package": stats["package"],
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"generated": stats["generated"],
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},
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"total_revisions": stats["total"],
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})
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conn.close()
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log.info("Done.")
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if __name__ == "__main__":
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main()
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