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Research-Stack/6-Documentation
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Brandon Schneider 6679908f7b fix(arch): enforce Lean-first hierarchy across project — remove all secondary-Lean language 
Project-wide sweep to find and fix every place Lean was treated as secondary,
optional, or subordinate to Python/Rust. The invariant: Lean is the source of
truth. Python and Rust are extraction targets only; they contain no logic, no
invariant checks, no decisions.

Changes:

1-Distributed-Systems/ene/src/lib.rs
  - CRITICAL: Remove 'Rust is the canonical implementation language for
    operational components' — replace with correct extraction-target framing

1-Distributed-Systems/agents/claw/README.md
  - Remove 'canonical implementation lives in rust/' and 'source of truth is
    ultraworkers/claw-code' blanket claims — scope to CLI binary only;
    add Research Stack domain-logic note (Lean is source of truth per AGENTS.md)
  - 'canonical Rust workspace' → 'Rust workspace (I/O extraction target)'

1-Distributed-Systems/agents/claw/src/Tool.py
  - 'Python-first porting summary' → 'Lean-to-Python extraction summary'

1-Distributed-Systems/agents/claw/src/projectOnboardingState.py
  - python_first: bool = True → lean_first: bool = True (Lean always leads)

6-Documentation/docs/specs/ENE_MEMORY_ATLAS_SPEC.md
  - CRITICAL: 'Python first (reference) ... Lean-formal next' → correct order:
    Lean specification first, Python extraction shim, Verilog hardware extraction

6-Documentation/docs/recovered/geocognition_equation_types_map.mmd
  - 'Lean owns logic; Rust owns boundary' → 'Lean owns all logic and decisions;
    Rust is boundary shim only'

6-Documentation/docs/semantics/HYPER_DIMENSIONAL_PHYSICS_INTRO.md
  - 'Python implementation ... Lean formalization' → 'Lean specification (source
    of truth) ... Python extraction shim'

6-Documentation/docs/geometry/GEOMETRY_TAXONOMY_FOR_NLOCAL_ADAPTATION.md
  - 'reference specification for the Python implementation' → 'source of truth;
    Python is an extraction shim against this spec'

6-Documentation/docs/protocols/TM_MCP_SPECIFICATION.md
  - 'Python reference implementation' → 'Python extraction shim' (×2)

5-Applications/scripts/snn/README.md
  - 'deterministic Python reference' → 'Python extraction shim / golden-vector
    harness'; add TODO(lean-port) note; RTL must match 'Python shim (pending
    Lean golden vector)' not 'Python reference'

6-Documentation/docs/METAPROBE_APPROACH.md
  - 'DeltaGCLCompression.lean — Lean implementation / scripts/delta_gcl_encoder.py
    — Python reference implementation' → Lean is source of truth / Python is
    extraction shim

Generated with Devin (https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-05-26 22:40:03 -05:00
..
Adversarial Data collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
articles collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
chat-log-dumps collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
docs fix(arch): enforce Lean-first hierarchy across project — remove all secondary-Lean language 2026-05-26 22:40:03 -05:00
famm Add turbulence model atlas gate documentation 2026-05-19 10:24:36 -05:00
finance/raw initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
invention_record initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
reports Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
reviews Expand ene-rds Rust workspace and refine devcontainer 2026-05-19 07:52:39 +00:00
security Track remaining Dependabot transitive exceptions 2026-05-11 23:45:53 -05:00
tiddlywiki-local wiki: link PIST route-repair receipt update from home 2026-05-26 14:38:39 -05:00
wiki WIP: accumulated changes 2026-05-25 16:24:21 -05:00
calculator_plain_math.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ELEVATOR_PITCH.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
EXPLANATION_FOR_HUMANS.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
README.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00

README.md

6-Documentation

Purpose: Papers, extended semantics, wiki exports, archive, invention records.

Depends on: 0 through 5

Contents (Target)

Source Destination
docs/ 6-Documentation/docs/
archive/ 6-Documentation/archive/
invention_record/ 6-Documentation/invention_record/
Obdisidan connector/ 6-Documentation/wiki/Obsidian-connector/

Papers

Paper Topic Status
Paper 12 PIST — Perfectly Imperfect Square Theory Draft
(TBD) SVQF / FAMM / Braid Theory Planned
(TBD) ENE Mesh — Self-Replicating Consensus Planned

Acronym Registry

Acronym Expansion
OTOM Ordered Transformation & Orchestration Model
PIST Perfectly Imperfect Square Theory
ENE Endless Node Edges
AMMR Algebraic Merkle Mountain Range
SVQF Spherical Quaternion Vector Field
FAMM Frustration-Aware Manifold Mesh
SLUQ Stochastic Look-Up Queue
TTM Layered architecture (Layer F = Control)