Research-Stack/3-Mathematical-Models
Brandon Schneider b58c1201ac Remove legacy Python prototypes superseded by Lean formalization
Deleted 58 Python files (~31K lines) that were experimental prototypes
and bootstrapping scripts now superseded by the Lean source of truth:

0-Core-Formalism/core/ (2 files):
  - field_solver_emulator.py
  - formalize_mass_number.py

0-Core-Formalism/lean/LeanGPT/ (17 files):
  - All LLM bootstrapping scripts (algorithm_bootstrap, automated_conviction_loop,
    classify_algorithms, external_model_bridge, genetic_hypothesis_generator,
    group_algorithms_by_domain, hutter_prize_full_test, hutter_prize_test,
    hypothesis_generator, mathematical_law_conviction, otom_pipeline,
    performance_profiler, refine_algorithms_by_domain, skeptical_agent_concern_fix,
    skeptical_agent_swarm, wgsl_hypothesis_runner)

0-Core-Formalism/lean/Semantics/ (1 file):
  - expand_domains.py

0-Core-Formalism/otom/ (4 files):
  - scripts/validate_routing.py
  - tools/ene/ene_artifact_salvage_extractor.py
  - tools/genetics/emit_selection_receipt.py
  - tools/genetics/selection_metrics.py

2-Search-Space/ (14 files):
  - FAMM/solve_famm_sorry.py
  - GhostPivot/gist_pivot_poc.py
  - PIST/hybrid_tsm_pist_torus.py, pist_sweep.py
  - SVQF/microgrid_voxel_emulation.py
  - manifold/ (9 files: api/server, collapse_editor, particle_interaction,
    projection_engine, relativity_adapter, self_typing_engine, soliton_search,
    substrate_bridge)
  - search/generate_lut.py, ingest_pd.py, sweep_manifold.py

3-Mathematical-Models/ (20 files):
  - dna_benchmark/compressors/ (5 files)
  - pist_biological_polymorphic_shifter_v3*.py (5 files)
  - fiber_optic_vibrational_tensor/fiber_optic_tensor_network.py
  - manifold_compression/src/ (2 files)
  - fix_kwargs_meta.py, fix_metadata.py, fix_remaining.py, fix_sbox.py
  - genetics/Allelica/Allelica.py

These prototypes expressed formal concepts in Python that are now
formalized in Lean (747+ Lean modules). Per AGENTS.md, Lean is the
source of truth for formal claims.

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-05-19 15:34:17 +00:00
..
AMMR initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
bezier-kit initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
cad_models Consolidate research stack updates 2026-05-05 21:09:48 -05:00
eigenvector_tsm Consolidate research stack updates 2026-05-05 21:09:48 -05:00
equations_compressed initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
equations_parallel_10000 initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
equations_parallel_test initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
equations_parquet_tagged Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
fiber_optic_vibrational_tensor Remove legacy Python prototypes superseded by Lean formalization 2026-05-19 15:34:17 +00:00
genetics Remove legacy Python prototypes superseded by Lean formalization 2026-05-19 15:34:17 +00:00
hutter_eigenvector Consolidate research stack updates 2026-05-05 21:09:48 -05:00
hutter_howto initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
language_math_models/synthesis initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
manifold_compression Remove legacy Python prototypes superseded by Lean formalization 2026-05-19 15:34:17 +00:00
microgravity-fork Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
arxiv_findings_50.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
arxiv_findings_500.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
arxiv_findings_500_remapped.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
arxiv_llm_mapped.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
auto_findings_1000.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
auto_findings_test.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
batch_findings_mapped.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
equations_NUVMAP_index.json integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
extracted_equations.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
fractional_unified_field.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
gut_synthesis_100years.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
half_mobius_investigation.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
mass_number_proofs.json integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
math_centric_samples.json integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
MATH_MODEL_MAP.tsv initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
math_raw_summary.json integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
math_self_discovered.json integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
particle_spin_rainbow_table.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
physics_compression_bridge.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
physics_eqs_eigenvector_mapped.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
physics_eqs_mapped.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
physics_eqs_mapped_parallel.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
physics_eqs_mapped_pro.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
physics_metaprobe.jsonl Consolidate research stack updates 2026-05-05 21:09:48 -05:00
README.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
recursive_branch_cut_self_similarity.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
structural_discovery.json integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
thermodynamic_test_recursive_branch_cut.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
torsional_cosmology_spin.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
uncertainty_from_torsional_vibration.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
unified_9pattern_samples.json integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
unified_equation.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
universal_evolutionary_equation.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00
unknown_discovery_report.json integrate stashed changes: math model data updates + 4 receipt dirs + container config 2026-05-17 12:03:19 -05:00
variable_omega_edge_anomalies.md Consolidate research stack updates 2026-05-05 21:09:48 -05:00

3-Mathematical-Models

Purpose: Central equation registry, proof tracking, and mathematical substrate index.

Depends on: 0-Core-Formalism, 2-Search-Space

Contents (Target)

Source Destination
data/mathlib_database/ 3-Mathematical-Models/database/
data/equation_extraction_* 3-Mathematical-Models/equations_*

Registry Format

TSV-style with columns: Model_Name | Family | Equation | Variables | Purpose | Location | Implemented | Status | Cross_Refs | Domain_Type | Bind_Class

Rule

All new mathematical models MUST be added to the registry before creating separate documentation.