Project-wide sweep to find and fix every place Lean was treated as secondary,
optional, or subordinate to Python/Rust. The invariant: Lean is the source of
truth. Python and Rust are extraction targets only; they contain no logic, no
invariant checks, no decisions.
Changes:
1-Distributed-Systems/ene/src/lib.rs
- CRITICAL: Remove 'Rust is the canonical implementation language for
operational components' — replace with correct extraction-target framing
1-Distributed-Systems/agents/claw/README.md
- Remove 'canonical implementation lives in rust/' and 'source of truth is
ultraworkers/claw-code' blanket claims — scope to CLI binary only;
add Research Stack domain-logic note (Lean is source of truth per AGENTS.md)
- 'canonical Rust workspace' → 'Rust workspace (I/O extraction target)'
1-Distributed-Systems/agents/claw/src/Tool.py
- 'Python-first porting summary' → 'Lean-to-Python extraction summary'
1-Distributed-Systems/agents/claw/src/projectOnboardingState.py
- python_first: bool = True → lean_first: bool = True (Lean always leads)
6-Documentation/docs/specs/ENE_MEMORY_ATLAS_SPEC.md
- CRITICAL: 'Python first (reference) ... Lean-formal next' → correct order:
Lean specification first, Python extraction shim, Verilog hardware extraction
6-Documentation/docs/recovered/geocognition_equation_types_map.mmd
- 'Lean owns logic; Rust owns boundary' → 'Lean owns all logic and decisions;
Rust is boundary shim only'
6-Documentation/docs/semantics/HYPER_DIMENSIONAL_PHYSICS_INTRO.md
- 'Python implementation ... Lean formalization' → 'Lean specification (source
of truth) ... Python extraction shim'
6-Documentation/docs/geometry/GEOMETRY_TAXONOMY_FOR_NLOCAL_ADAPTATION.md
- 'reference specification for the Python implementation' → 'source of truth;
Python is an extraction shim against this spec'
6-Documentation/docs/protocols/TM_MCP_SPECIFICATION.md
- 'Python reference implementation' → 'Python extraction shim' (×2)
5-Applications/scripts/snn/README.md
- 'deterministic Python reference' → 'Python extraction shim / golden-vector
harness'; add TODO(lean-port) note; RTL must match 'Python shim (pending
Lean golden vector)' not 'Python reference'
6-Documentation/docs/METAPROBE_APPROACH.md
- 'DeltaGCLCompression.lean — Lean implementation / scripts/delta_gcl_encoder.py
— Python reference implementation' → Lean is source of truth / Python is
extraction shim
Generated with Devin (https://cli.devin.ai/docs)
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
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||
|---|---|---|
| .agents/plugins | ||
| .consolidation-manifests | ||
| .contextstream | ||
| .cursor | ||
| .devcontainer | ||
| .devin | ||
| .github | ||
| .kilo/rules | ||
| .roo | ||
| .vscode | ||
| 0-Core-Formalism | ||
| 1-Distributed-Systems | ||
| 2-Search-Space | ||
| 3-Mathematical-Models | ||
| 4-Infrastructure | ||
| 5-Applications | ||
| 6-Documentation | ||
| 6-Kernel-Shim | ||
| ai-math-discovery-systems | ||
| archive/2026-05-26 | ||
| data/erdos_famm_solved_scars | ||
| docs | ||
| obsidian-vault | ||
| pending/lean_unification | ||
| plugins/substack-connector | ||
| scripts/qc-flag | ||
| shared-data | ||
| workspace-config | ||
| .aider.conf.yml | ||
| .clinerules | ||
| .codeiumignore | ||
| .cursorrules | ||
| .gitattributes | ||
| .gitignore | ||
| .gitmodules | ||
| .mcp.json | ||
| .pre-commit-config.yaml | ||
| .python-version | ||
| .sops.yaml | ||
| AGENTS.md | ||
| ARCHITECTURE.md | ||
| CHANGELOG.md | ||
| CITATION.cff | ||
| claims.yaml | ||
| CLAUDE.md | ||
| CONCEPTS.md | ||
| Containerfile | ||
| cupfox-config.nix | ||
| flake.lock | ||
| flake.nix | ||
| GEMINI.md | ||
| GETTING_STARTED.md | ||
| kilo.jsonc | ||
| LICENSE | ||
| Modelfile | ||
| NOTICE | ||
| opencode.json | ||
| package-lock.json | ||
| package.json | ||
| pyrightconfig.json | ||
| README.md | ||
| requirements-optional-science.txt | ||
| result-devcontainer | ||
| run-container.sh | ||
| system-packages-optional-science.txt | ||
| THIRD_PARTY_NOTICES.md | ||
| TODO_MAP.md | ||
Research-Stack (OTOM)
Ultra-low power, zero-decimal data routing and compression.
If you just stumbled across this repository, you might see words like "Topological State Machine" and "Manifold Points" and assume this is dense, academic magic. It isn't.
This project is actually built on a very simple, grounded idea: Modern computing is incredibly wasteful.
Right now, running AI or compressing massive datasets requires giant, power-hungry GPUs because they rely on Floating-Point Math (heavy decimals like 3.14159...). We prove that you don't need decimals. You can map complex data (like the grammar of the English language) into structural shapes, and navigate them using only simple integers (whole numbers).
Because we only use addition, subtraction, multiplication, and modulo, this system can run on a $15 blank-slate microchip (an FPGA) instead of a massive server farm.
🛠️ How we know it works (Zero Guesswork)
We do not guess that our integer math works. We prove it. The core of this project is written in Lean 4, a strict mathematical theorem prover. If our logic has a flaw, the code physically will not compile. We currently have 746 verified Lean modules across a 3,529-job deterministic build (0 errors) securing this engine.
Python, Rust, and Verilog only exist in this repository to act as "dumb pipes" to feed data into our proven mathematical core.
📁 Repository Structure (By Goal)
Everything is numbered so you know exactly what depends on what.
| Folder | What it actually is (Plain English) |
|---|---|
0-Core-Formalism/ |
The Brain. Lean 4 code. The mathematically proven integer arithmetic. This is the source of truth. |
1-Distributed-Systems/ |
The Network. Code for making multiple computers talk to each other to share the workload. |
2-Search-Space/ |
The Navigator. Algorithms that search through our data shapes to find the best routes. |
3-Mathematical-Models/ |
The Library. Where we store our databases of equations and compressed English grammar shapes. |
4-Infrastructure/ |
The Drivers. Code that physically talks to the hardware, GPUs, and APIs. |
5-Applications/ |
The Executables. Python scripts that run the system end-to-end. (These are just shims connecting data to our Lean 4 Brain). |
6-Documentation/ |
The Manual. Where you'll find plain-English explanations and our theoretical papers. |
shared-data/ |
Raw data, cache, and exported files. |
📖 Where to start?
If you are new here, read these two files first:
- Explanation for Humans - A translation guide for our technical jargon.
- Calculator-Plain Math - Proof that every complex concept we use can be calculated on a high-school graphing calculator.
🚀 Quick Start
# 1. Compile the mathematically proven core (Takes ~1-2 minutes)
cd "0-Core-Formalism/lean/Semantics"
lake build
# 2. Run the English Manifold Builder (Compresses English via grammar shapes)
cd "../../.."
python3 5-Applications/scripts/redpajama_english_manifold.py
⚖️ The One Rule for Contributors
Lean is the source of truth.
If you add logic, it goes in 0-Core-Formalism/lean/Semantics/ and must be mathematically proven. Python scripts may not contain complex math, branching logic, or cost functions. Python is just the delivery boy for Lean.
🗄️ Infrastructure (Current)
| Component | Description |
|---|---|
4-Infrastructure/infra/ene-rds/ |
Rust workspace (8 crates) replacing the Python RDS stack — Axum HTTP API, PostgreSQL, Ollama embeddings |
4-Infrastructure/storage/ |
restic + Garage S3 (v2.3.0, Tailscale mesh) + rclone storage stack with automated observer agent |
.devcontainer/ |
NixOS hermetic devcontainer with OpenGL/X11, Lean, Python science stack, MCP servers (Notion + AWS) |
4-Infrastructure/infra/credential_server.py |
Credential gateway with apiProvider service kind and cupfox routing |
Research Stack — All Rights Reserved
