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Research-Stack/4-Infrastructure
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Brandon Schneider ef7b0849d5 fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 
Security & correctness fixes from full adversarial review:

Lean (7 fixes):
- FixedPoint.lean: guard false theorem with n > 0 precondition
- QFactor.lean: remove double-scaling error in energy decrease
- AVMIsa/Step.lean: implement addSatQ16/subSatQ16 primitives
- BraidEigensolid.lean: fix crossStep second output argument swap
- SSMS.lean: complete ACI preservation proof (with rounding caveat)
- HouseholderQR.lean: add n > 0 precondition to spectral theorem

Verilog (7 fixes):
- q16_lut_core.v: fix multiply shift (16 → 32 bits)
- q16_lut_top.v: fix valid bit (0 → 1)
- cff_accelerator.v: fix SHA-256 padding (len < 448 check)
- research_stack_top.v: fix trigger aliasing (unique counters)
- Blitter6502OISC_small.v: fix address width (15 → 16 bits)
- spatial_hash_bram.v: add OOB write guard
- tmr_oepi_safety_fsm.v: fix double-increment race

WGSL (6 fixes):
- shaders.wgsl: atomicAdd for concurrent writes
- frustration_qubo.wgsl: double-buffer + CAS loop
- braid_fft.wgsl: workgroupBarrier synchronization
- burgers_scar_filter.wgsl: atomic E_bins array

Rust (9 fixes):
- thermodynamic.rs: Arc::from_raw → Arc::clone (double-free)
- thermodynamic.rs: Box::into_raw → Box (leak)
- tools/src/lib.rs: shell injection → shlex.quote
- ene-node/src/lib.rs: LRU caps, constant-time HMAC, peer caps

Python (6 fixes):
- similarity/__init__.py: pickle.load → RestrictedUnpickler
- AI-Feynman: torch.load → weights_only=True (14 calls)
- fetch_arxiv.py, fetch_s2.py: eval → ast.literal_eval
- topology.py: os.system → shutil.copy2
- SSH pipe: os.system → base64 pipe

Build: lake build 3572 jobs, 0 errors
2026-05-31 23:38:03 -05:00
..
auto archive: remove dated receipts, experimental probes, and uncompiled prototypes 2026-05-25 16:51:58 -05:00
bin chore: commit accumulated working tree changes 2026-05-30 00:10:02 -05:00
cloudflare feat(infra): Garage 6-node RF3 cluster, Cloudflare Workers deploy, k3s node additions 2026-05-31 03:39:11 -05:00
config initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
docs docs(infra): plan — mesh networking layers over Ray 2026-05-30 20:03:57 -05:00
drivers initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
exploit-infra/CATEGORY/TSM initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
hardware fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 2026-05-31 23:38:03 -05:00
infra fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 2026-05-31 23:38:03 -05:00
k3s-flake docs: add Reality Audit section to k3s-flake README 2026-05-31 23:19:42 -05:00
kernel chore: preserve working tree before secure wipe 2026-05-13 17:36:02 -05:00
kube fix(infra): standardize k3s cluster — Traefik, ingress, architecture docs, Ray GPU workers 2026-05-31 23:13:04 -05:00
nano-kernel Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
netcup-vps chore: commit accumulated working tree changes 2026-05-30 00:10:02 -05:00
NoDupeLabs Scrub tracked API key material 2026-05-11 22:25:43 -05:00
packaging collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
rds_probe Fix Dependabot vulns: update sqlx 0.7->0.8.6, add ene-rds Cargo.lock 2026-05-19 08:09:34 +00:00
scripts feat(pist): Route-Repair v1.1 — 60 failure flexures ingested, obstruction-type voting 2026-05-26 12:17:42 -05:00
servo-fetch fix(deps): update tar to v0.4.46 and refresh npm packages 2026-05-30 00:37:43 -05:00
shim fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 2026-05-31 23:38:03 -05:00
shims initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
storage feat(infra): Garage 6-node RF3 cluster, Cloudflare Workers deploy, k3s node additions 2026-05-31 03:39:11 -05:00
surface initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
witness Refactor provenance sources for open witness backends 2026-05-12 05:57:04 -05:00
AGENTS.md feat(infra): Garage 6-node RF3 cluster, Cloudflare Workers deploy, k3s node additions 2026-05-31 03:39:11 -05:00
README.md docs: full documentation + roadmap refresh (2026-05-19) 2026-05-19 09:12:16 +00:00

README.md

4-Infrastructure

Purpose: Rust/Python shims, GPU duty assignment, cloud storage, web interaction, hardware designs, drivers, and the ENE RDS Rust workspace.

Depends on: 0 through 3

Directory Layout

Path Purpose
infra/ Python shims, ENE distributed node, credential server
infra/ene-rds/ ENE RDS Rust workspace (8 crates — Rust replacement for Python RDS stack)
hardware/ FPGA Verilog, FAMM verilator, KiCad templates
drivers/ Hardware drivers
gpu/ WGSL shaders, wgpu compute dispatch
storage/ restic + Garage S3 + rclone storage stack
storage/storage_agent.py Storage observer/optimizer agent
shim/ Stack solidification probes, adversarial harnesses, gate library
surface/ FastAPI/WebSocket surface (spec'd, pending implementation)

ENE RDS Rust Workspace (infra/ene-rds/)

8-crate Rust workspace replacing the Python RDS stack. Build: cd 4-Infrastructure/infra/ene-rds && cargo build --release.

Crate Purpose
ene-rds-core Shared PostgreSQL client, DSN builder, receipts
ene-rds-wiki Wiki CRUD + full-text search + revision tracking
ene-rds-ephemeral EphemeralNode thermal zones, tasks, receipts, scars, metrics
ene-rds-chat Chat session ingestion, keyword/semantic search
ene-api Axum HTTP server on :3000
ene-node Node identity and gossip primitives
ene-storage S3/Garage object storage client
ene-sync Polls opencode.db SQLite → upserts into RDS chat tables

sqlx 0.8.6 (Dependabot vuln from 0.7 resolved 2026-05-19).

Storage Stack (storage/)

Three tools, non-overlapping roles. Full contract: 4-Infrastructure/AGENTS.md §Storage Stack.

Tool Job
restic Deduplicated, encrypted, content-addressed snapshots
Garage v2.3.0 Self-hosted S3-compatible object store (Tailscale mesh, 5 buckets)
rclone Raw sync between remotes (Garage↔gdrive cold copy)

Storage agent (storage/storage_agent.py): observe→decide→act loop, systemd timer (every 15 min), Q16_16 thresholds, JSONL hash-chain receipts.

GPU Status

  • Device: NVIDIA GeForce RTX 4070
  • Memory: 12.3GB total, ~10GB available
  • CUDA: 13.0
  • Compute dispatch: WGSL → wgpu (Vulkan GPU / lavapipe CPU / WebGPU WASM). Dispatch entry points: 5-Applications/parquet_compressor/src/gpu.rs, gpu/wasmgpu/ (47 WGSL shaders)

Components

  • ENE RDS — Rust workspace replacing Python RDS (see above)
  • Storage Stack — restic + Garage S3 + rclone (see above)
  • Lean Shim — Lean ↔ Python bidirectional interface
  • ENE Shim — ENE node management from Python
  • GPU Duty — WGSL/wgpu compute dispatch (Q16_16 deterministic across all substrates)
  • Credential Gateway — infra/credential_server.py, apiProvider service kind, cupfox routing
  • Adversarial Harnesses — shim/adversarial_duals/: Anti-FAMM, Anti-BraidStorm, 20+ gate library entries