mirror of
https://github.com/allaunthefox/Research-Stack.git
synced 2026-07-31 03:05:21 +00:00
117 lines
4.3 KiB
Bash
Executable file
117 lines
4.3 KiB
Bash
Executable file
#!/bin/bash
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set -e
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# Configuration
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WORKSPACE="/home/allaun/Documents/Research Stack"
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MANIFEST_DIR="$WORKSPACE/.consolidation-manifests"
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DATE=$(date +%Y-%m-%d_%H-%M-%S)
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MASTER="$MANIFEST_DIR/MASTER-$DATE.sha256"
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mkdir -p "$MANIFEST_DIR"
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mkdir -p "$WORKSPACE/3-Mathematical-Models/genetics"
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mkdir -p "$WORKSPACE/2-Search-Space/simulations"
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mkdir -p "$WORKSPACE/5-Applications/pist-scripts"
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mkdir -p "$WORKSPACE/6-Documentation/papers"
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echo "=== Research Stack Consolidation & Hashing ==="
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echo "Date: $DATE"
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echo "Workspace: $WORKSPACE"
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hash_and_move() {
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local src="$1"
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local dest="$2"
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local name=$(basename "$src")
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local manifest="$MANIFEST_DIR/$(echo "$src" | tr '/' '-')-$DATE.sha256"
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if [ -e "$src" ]; then
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echo "Processing: $src"
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find "$src" -type f -print0 | xargs -0 sha256sum > "$manifest"
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cat "$manifest" >> "$MASTER"
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# Ensure parent dest exists
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mkdir -p "$(dirname "$dest")"
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cp -r "$src" "$dest"
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echo "Copied to: $dest"
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# rm -rf "$src" # We'll do a final cleanup after user confirms
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else
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echo "Skipping: $src (not found)"
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fi
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}
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# 1. Fold external repos into monorepo
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repos=(
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"braid-field-papers|6-Documentation/papers/braid-field-papers"
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"AMMR|3-Mathematical-Models/AMMR"
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"bezier-kit|3-Mathematical-Models/bezier-kit"
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"Newtonian-Superfluid-Simulation|2-Search-Space/simulations/Newtonian-Superfluid-Simulation"
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"heat-2D|2-Search-Space/simulations/heat-2D"
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"chunked-audio-DSP|2-Search-Space/simulations/chunked-audio-DSP"
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"matter-frequencies|2-Search-Space/simulations/matter-frequencies"
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"Allelica|3-Mathematical-Models/genetics/Allelica"
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"parametric-learn|3-Mathematical-Models/genetics/parametric-learn"
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"NoDupeLabs|4-Infrastructure/NoDupeLabs"
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)
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TEMP_CLONE="/tmp/research_stack_clones"
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mkdir -p "$TEMP_CLONE"
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for entry in "${repos[@]}"; do
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repo_name="${entry%%|*}"
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dest_path="${entry#*|}"
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echo "Folding $repo_name..."
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if [ ! -d "$WORKSPACE/$dest_path" ]; then
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git clone "https://github.com/allaunthefox/$repo_name.git" "$TEMP_CLONE/$repo_name" --depth 1
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rm -rf "$TEMP_CLONE/$repo_name/.git"
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cp -r "$TEMP_CLONE/$repo_name" "$WORKSPACE/$dest_path"
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rm -rf "$TEMP_CLONE/$repo_name"
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else
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echo "Skipping $repo_name (already exists in workspace)"
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fi
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done
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# 2. Move loose files from Desktop
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hash_and_move "/home/allaun/Desktop/manifold_compression" "$WORKSPACE/3-Mathematical-Models/manifold_compression"
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hash_and_move "/home/allaun/Desktop/pist_biological_polymorphic_shifter_v3.py" "$WORKSPACE/5-Applications/pist-scripts/"
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hash_and_move "/home/allaun/Desktop/pist_biological_polymorphic_shifter_v3_complete.py" "$WORKSPACE/5-Applications/pist-scripts/"
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hash_and_move "/home/allaun/Desktop/pist_gcl_compression.py" "$WORKSPACE/5-Applications/pist-scripts/"
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# 3. Move loose folders from Documents
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hash_and_move "/home/allaun/Documents/Semantics" "$WORKSPACE/0-Core-Formalism/lean/Semantics"
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hash_and_move "/home/allaun/Documents/projects/hutter_prize" "$WORKSPACE/5-Applications/hutter_prize"
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hash_and_move "/home/allaun/Documents/projects/teleport-kanban" "$WORKSPACE/5-Applications/teleport-kanban"
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# 4. Cleanup redundant directories at /home/allaun (if confirmed)
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# These were marked as duplicates/stale in previous audits
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redundant=(
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"/home/allaun/Desktop/OTOM"
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"/home/allaun/Documents/DeleteMe"
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"/home/allaun/Documents/Research Stack-backups"
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"/home/allaun/Documents/Forked"
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"/home/allaun/OTOM"
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"/home/allaun/NoDupeLabs"
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"/home/allaun/tardygrada-Organism"
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"/home/allaun/claw-code"
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"/home/allaun/latex_demo"
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"/home/allaun/Research Stack" # This is likely a debris folder if WORKSPACE is in Documents
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)
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for dir in "${redundant[@]}"; do
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if [ -d "$dir" ] && [ "$dir" != "$WORKSPACE" ]; then
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echo "Removing redundant: $dir"
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rm -rf "$dir"
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fi
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done
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# 5. Replace CascadeProjects symlink
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if [ -d "/home/allaun/CascadeProjects/Research-Stack" ]; then
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echo "Replacing CascadeProjects mirror with symlink"
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rm -rf "/home/allaun/CascadeProjects/Research-Stack"
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ln -s "$WORKSPACE" "/home/allaun/CascadeProjects/Research-Stack"
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fi
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echo "=== Consolidation Complete ==="
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echo "Master manifest: $MASTER"
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echo "Please verify the contents of $WORKSPACE"
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echo "Next: Archive/Delete the repos on GitHub using scripts/archive-and-delete-v2.sh"
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