{"file":"AGENTS.md","title":"AGENTS.md - Research Stack Operating Contract","concepts":[{"name":"Sidon label","description":"An address from a set where all pairwise sums are unique. Powers of 2 (1,2,4,8,16,32,64,128) are the canonical Sidon set for 8 strands.","type":"definition"},{"name":"Sidon slack","description":"Address budget minus max label used; encodes capacity headroom.","type":"definition"},{"name":"BraidStorm","description":"The 8-strand braid topology used by the eigensolid compressor. Strands cross pairwise; each crossing merges phase and produces a residual.","type":"primitive"},{"name":"eigensolid","description":"The converged, stable state of a braid crossing loop. Detected when crossStep(s) = s. The DC baseline in the TNT BraidCarrier model.","type":"invariant"},{"name":"scar","description":"A FAMM failure record storing scar_pressure, failure_mode, and optional coarsening_agent. Scar absence is a positive receipt dimension.","type":"definition"},{"name":"Yang-Baxter","description":"The braid relation βij βjk βij = βjk βij βjk that defines braid-order invariance.","type":"theorem"},{"name":"Anti-BraidStorm","description":"Adversarial dual that tests Yang-Baxter invariance and receipt aliasing as a validation layer for the compressor.","type":"gate"},{"name":"MORE FAMM","description":"Memory-Optimized Recursive Entropy Fractal Aggregate Memory Model. Capability-based memory isolation for the runtime stack.","type":"architecture"},{"name":"TSM","description":"Topological S3C Manifold. Thermodynamic safety monitor with Builder/Warden/Judge clock domains.","type":"architecture"},{"name":"GCL","description":"Genetic Code Language. Self-improving evolutionary program representation.","type":"primitive"},{"name":"AVM","description":"Adaptive Virtual Machine. Universal bridge between math languages and Python bytecode. Sole output boundary for RRC receipts.","type":"architecture"},{"name":"enwik9","description":"The Hutter Prize 1GB Wikipedia XML corpus, used as the canonical end-to-end test vector for the hierarchical compressor.","type":"primitive"},{"name":"receipt","description":"A machine-readable attestation record. Receipt dimensions (C, σ, k, ε_seq, t, ∅_scars) together form the encoding of the compressed state.","type":"receipt"},{"name":"Q16_16","description":"Fixed-point arithmetic type (16 integer bits, 16 fractional bits). Canonical constructor is Semantics.FixedPoint.Q16_16. No Float allowed in compute paths.","type":"definition"},{"name":"PhysicsScalarBridge","description":"Compatibility layer bridging PhysicsScalar.Q16_16 to canonical FixedPoint.Q16_16 with toFixedPoint/fromFixedPoint and bridged arithmetic.","type":"bridge"},{"name":"Headroom","description":"Context compression tool (v0.26.0) that compresses tool outputs, logs, and conversation history before they reach the LLM.","type":"tool"},{"name":"Hermes Agent","description":"Primary chat/dashboard gateway serving the fully-local Hermes-3 model. v0.14.0 on qfox-1 RTX 4070.","type":"tool"},{"name":"Ollama","description":"Local LLM inference server serving hermes3:latest from GGUF model with full GPU offload.","type":"tool"},{"name":"meta-solid","description":"Topological triple point where trace closure (Gas), local YB isotopy (Liquid), and braid class (Solid) are simultaneously exact at mixing fraction x=1/7.","type":"invariant"},{"name":"Finsler-Randers QAP","description":"Formulates Finsler-Randers directed routing as Quadratic Assignment Problem (via TSP-MTZ) and benchmarks against QUBO subset-selection.","type":"algorithm"},{"name":"QAP-MIP","description":"Mixed-integer programming formulation of QAP using Miller-Tucker-Zemlin subtour elimination for TSP. Scales as O(n³) empirically.","type":"algorithm"},{"name":"PIST/RRC classification","description":"Rainbow Raccoon Compiler pipeline classifying equation records into ACCEPT/HOLD/QUARANTINE states with receipt-bearing evidence.","type":"gate"},{"name":"eigensolid_convergence","description":"Required Lean theorem proving the braid crossing loop stabilizes. Proven in EigensolidConvergence.lean.","type":"theorem"},{"name":"receipt_invertible","description":"Required Lean theorem proving original state is reconstructible from receipt within bounded error. Pending.","type":"theorem"},{"name":"AVMIsa.Emit","description":"Sole output boundary for top-level receipt JSON emission. No other module may produce top-level receipts.","type":"gate"},{"name":"RRC.Corpus250","description":"250 raw FixtureRows — Python-supplied, Lean-gated; no decisions.","type":"primitive"},{"name":"RRC.Emit","description":"Alignment classifier producing missingPrediction/alignedExact/etc. status for RRC corpus.","type":"gate"},{"name":"ContextStream","description":"Persistent memory and context management system for coding agents, providing init/context/search/session tools.","type":"tool"},{"name":"Cornfield recovery","description":"Explicit retrieval trigger (RECOVER LEGACY INFORMATION) for archived or quarantined concepts from legacy branches.","type":"protocol"},{"name":"Post-interaction workflow","description":"Mandatory steps after every agent session: update AGENTS.md, verify build, commit explicit files, check tree cleanliness.","type":"recipe"},{"name":"Programming choice flow","description":"Decision tree for placing new logic: Lean owns all decisions, Python owns all I/O. Float forbidden in compute paths.","type":"pattern"},{"name":"token_strand_adjacency_8x8_v1","description":"Matrix schema where global vocab tokens are projected to 8 strands via vocab_index % 8, building an 8×8 bigram adjacency matrix.","type":"algorithm"},{"name":"PIST matrix builder","description":"Python shim generating rrc_pist_predictions_250_v1.json with deterministic dedup by equation_id.","type":"tool"},{"name":"CITATION.cff","description":"Citation reference map where external sources are provenance and terminology references unless explicitly promoted by Lean theorem or receipt.","type":"spec"}],"tags":["operating-contract","lean","fixed-point","braid","compression","receipt","agent-workflow","glossary","Q16_16","PIST","RRC","FAMM","AVM","Sidon","eigensolid","Headroom","Hermes","meta-solid","Finsler-Randers","QAP"],"layer":"Documentation","dependencies":[],"summary":"Master operating contract for the Research Stack repository. Defines ground rules, glossary, compression first principles, programming choice flow, post-interaction workflow, Q16_16 unification status, PIST predictions pipeline, and recent findings including meta-solid topology and Finsler-Randers QAP benchmarks."}
{"file":"ARCHITECTURE.md","title":"ARCHITECTURE.md — Observerless Research Stack","concepts":[{"name":"Observerless Research Stack","description":"A formal verification and compression system grounded in cross-domain invariant analysis. Every transformation is a receipt-bearing event preserving declared invariants.","type":"architecture"},{"name":"Layer Model","description":"7-level stack from Primordial (Level 0) through Meta-Computation (Level 6), each with domain, key substrates, and invariants.","type":"architecture"},{"name":"PIST/DIAT Shells","description":"Shell/integer coordinate transforms at the Primordial layer. mass = t·(2k+1-t) preserved under all lawful transitions.","type":"primitive"},{"name":"GWL 5-Factor Coupling","description":"Geometric coupling at Level 1: w_ij = cos(Δθ)·cos(Δφ)·(1-2|Δχ|)·exp(-|Δp|²/2σ²). Enforces dE/dt ≤ 0.","type":"algorithm"},{"name":"AngrySphinx Gate","description":"Exponential security gate at Level 4: E_solve ≥ 2^n where n = type depth. NaN boundary at F=0.","type":"gate"},{"name":"FAMM Frustration","description":"Frustration Aligned Memory Management at Level 4. Triadic incompatibility → frustration grows until resolved.","type":"invariant"},{"name":"CrossDimensionalFilter","description":"Semantic layer (Level 5) using 12 irreducible primes preserved across dimensional reduction.","type":"architecture"},{"name":"Cognitive Router","description":"Meta-computation (Level 6) selecting optimal compression strategy. L_total = λI·L_I + λE·L_E - λG·L_G + λR·L_R + λM·L_M.","type":"algorithm"},{"name":"Trixal Quality","description":"Thermodynamic quality check (Level 3): dS/dt ≤ 0, Landauer bound W ≥ k_B·T·ln(2).","type":"invariant"},{"name":"Homeostatic Governor","description":"Compression pressure converges to stable p*. p_{t+1} = γ·p_t + α·surprise + β·regret.","type":"invariant"},{"name":"Three-Axis Pipeline","description":"ENE (Substrate) ↔ Notion (Surface) ↔ Linear (Intent), reducing to Metatype Q0_64 scalar for cross-tier communication.","type":"architecture"},{"name":"Metatype","description":"1D Q0_64 scalar interface that every substrate reduces to, enabling cross-tier communication.","type":"definition"},{"name":"ENE","description":"SQLite-backed package store with hyperbolic concept coordinates holding ground truth substrate.","type":"architecture"},{"name":"Seven Core Invariants","description":"Mass Conservation, Exponential Gate, Semantic Prime Conservation, Frustration Monotonicity, Homeostatic Fixed Point, Cognitive Load Decomposition, Q0_64 Scalar Universality.","type":"invariant"},{"name":"GCCL","description":"Geometric, Cognitive, and Compression Law stack. The law stack defining what must be preserved.","type":"architecture"},{"name":"MISC","description":"Compression Engine using PIST shells, GWL coupling, Cognitive Router, Trixal Verify.","type":"architecture"},{"name":"GENSIS","description":"N-D Extension adding 64 codon tables, Izhikevich neurons, STDP, XNA backbones.","type":"architecture"},{"name":"USTSM","description":"Substrate Census mapping 36 substrates under one Q0_64 scalar.","type":"architecture"},{"name":"Settlement states","description":"Artifact lifecycle: SEED → FORMING → STABLE → CRYSTALLIZED → COMPRESSED.","type":"pattern"},{"name":"Promotion ladder","description":"Model progression: RAW_IDEA → SANITIZED_METAPHOR → TOY_MODEL → TYPED_MODEL → RESIDUAL_TESTED → COST_ACCOUNTED → PROOF_CANDIDATE → CORE_MODULE.","type":"pattern"},{"name":"Bounded Lawful Surface","description":"Transitions enter lawful surface only with valid syntax + declared projection + round-trip + invariant preservation + residual bound + receipt + scale validity.","type":"gate"},{"name":"Emergency Boot Flow","description":"Power failure path: AEM20940 monitor → Geometry Scan → Seed Assembly → TSM Reconstruction → ZK-STARK Validation.","type":"protocol"},{"name":"restic","description":"Deduplicated, encrypted, content-addressed snapshots for storage. Primary backend: Garage S3.","type":"tool"},{"name":"Garage v2.3.0","description":"Self-hosted S3-compatible object store over Tailscale mesh with 5 buckets.","type":"tool"},{"name":"rclone","description":"Raw sync between remotes (Garage↔gdrive) for cold copy of restic chunks.","type":"tool"},{"name":"storage_agent","description":"Observe→decide→act loop running every 15 minutes via systemd timer with Q16_16 thresholds and JSONL hash-chain receipts.","type":"tool"},{"name":"ENE RDS","description":"8-crate Rust workspace replacing Python RDS stack: core, wiki, ephemeral, chat, api, node, storage, sync.","type":"architecture"},{"name":"Braid Eigensolid Compressor","description":"Planned compute substrate for 8-strand BraidStorm topology using crossing matrix C, Sidon labels, and receipt dimensions (C, σ, k, ε_seq, t, ∅_scars).","type":"algorithm"},{"name":"Compiler surface","description":"The Compiler lean_lib is the sole gate for downstream import and receipt emission with three blessed roots: RRC.Corpus250, RRC.Emit, AVMIsa.Emit.","type":"gate"},{"name":"OpenAI Unit-Distance 2026","description":"External reference: 2026 planar unit-distance result imported as arithmetic witnesses and lattice cuts across all 7 layers.","type":"primitive"}],"tags":["architecture","layer-model","compression","receipt","invariant","storage","Rust","pipeline","settlement","promotion","emergency-boot","braid","eigensolid","compiler-surface"],"layer":"Documentation","dependencies":["AGENTS.md"],"summary":"Single-page architecture map of the Observerless Research Stack. Defines the 7-level layer model, three-axis pipeline (ENE/Notion/Linear), seven core invariants, framework hierarchy (GCCL/MISC/GENSIS), repository structure, settlement states, promotion ladder, storage layer, ENE RDS workspace, and braid eigensolid compressor design."}
{"file":"README.md","title":"Research-Stack (OTOM)","concepts":[{"name":"OTOM","description":"One-Truth-Only-Model. Ultra-low power, zero-decimal data routing and compression using only integer arithmetic.","type":"architecture"},{"name":"Q16.16 fixed-point","description":"Hardware-native integer arithmetic eliminating floating-point. Addition, subtraction, multiplication, and modulo only.","type":"primitive"},{"name":"lake build Compiler","description":"3,314-job deterministic Lean build with 0 errors securing the mathematical core.","type":"gate"},{"name":"Semantics.SDPVerify","description":"Certificate verification engine checking formal SDP proofs before they reach the rest of the stack.","type":"gate"},{"name":"Semantics.GoormaghtighCert","description":"SDP certificate formalizing the Goormaghtigh conjecture.","type":"theorem"},{"name":"HachimojiManifoldAxiom","description":"Encoding Hachimoji DNA (8 synthetic bases) as manifold axioms and substitution rules.","type":"definition"},{"name":"GeneticBraidBridge","description":"Bridge mapping genetic sequence structure onto braid topology.","type":"bridge"},{"name":"SieveLemmas","description":"Number-theoretic sieve results including depth_token_coprime_intersect.","type":"theorem"},{"name":"InteractionGraphSidon","description":"RRC weak axes modeled as atproto-style social-graph projections.","type":"algorithm"},{"name":"Gremlin mathblob database","description":"Azure Cosmos DB graph with 14,449 vertices and 29,379 edges for dependency exploration.","type":"tool"},{"name":"ene-rds","description":"Rust workspace (8 crates) replacing Python RDS stack with Axum HTTP API, PostgreSQL, Ollama embeddings.","type":"architecture"},{"name":"vcn_compute_substrate","description":"VCN H.265 video-as-compute substrate with auto-profiling for NVIDIA CABAC lossless vs AMD UMA bandwidth.","type":"tool"},{"name":"qemu_framebuffer_packer","description":"Zero-copy framebuffer packer with ARGB8888 100% density mapping (1 pixel = 1 scalar).","type":"tool"},{"name":"virtio_net_compute_fabric_spec","description":"Spec for Virtio-Net packet-as-computation (PIST) and QEMU graphics backplanes.","type":"spec"}],"tags":["OTOM","integer-arithmetic","Lean-4","FPGA","compression","proof","repository-structure","FAMM","PIST","AVM","VCN","QEMU","Virtio"],"layer":"Documentation","dependencies":["AGENTS.md","ARCHITECTURE.md"],"summary":"Project overview for the Research Stack (OTOM). Explains that modern computing is wasteful due to floating-point math, and this project proves complex data can be mapped to structural shapes navigated using only integers. Lean 4 is the source of truth with 746 verified modules. Python, Rust, and Verilog are extraction targets only."}
{"file":"GEMINI.md","title":"Gemini CLI Instructions for Research Stack","concepts":[{"name":"Lean source of truth","description":"Primary mandate: all core logic belongs in 0-Core-Formalism/lean/Semantics/. Python, Rust, and Verilog are shims/extraction targets only.","type":"invariant"},{"name":"Q0_16","description":"Pure fraction fixed-point type. Used alongside Q16_16 (mixed). Floats banned in core logic.","type":"definition"},{"name":"Statistical rigor","description":"All statistical claims must hit 6.5σ (preferred) or 6σ (acceptable). 5σ is the absolute floor.","type":"invariant"},{"name":"SI units","description":"All physical and compression claims must use SI base units.","type":"invariant"},{"name":"Wolfram Alpha verification","description":"Verify all mathematical formulas with Wolfram Alpha when possible.","type":"protocol"},{"name":"Plan-Act-Validate","description":"Verification workflow: outline Lean implementation, implement in Lean first, run lake build.","type":"pattern"}],"tags":["gemini","agent-instructions","Lean","fixed-point","verification","workflow"],"layer":"Documentation","dependencies":["AGENTS.md"],"summary":"Gemini CLI operating instructions for the Research Stack. Codifies key constraints: no floats, no new dependencies, statistical rigor thresholds, git hygiene, SI units. Defines Plan→Act→Validate workflow with Lean as source of truth."}
{"file":"CLAUDE.md","title":"Claude Code Instructions","concepts":[{"name":"ContextStream workflow","description":"Required workflow: init on first message, context on subsequent messages, search before file operations.","type":"protocol"},{"name":"ContextStream hooks","description":"System-reminder tags with injected instructions for ContextStream init/context/search enforcement.","type":"gate"}],"tags":["claude-code","contextstream","agent-instructions","hooks"],"layer":"Documentation","dependencies":[],"summary":"Claude Code instructions enforcing ContextStream-first workflow. Requires init/context/search calls before file operations and enforces hook-based rule injection."}
{"file":"CHANGELOG.md","title":"CHANGELOG","concepts":[{"name":"Lean Hardening","description":"Period of Lean proof work: closing 9 sorries, fixing SSMS sign bug, correcting false theorem statements, eigensolid convergence proof.","type":"recipe"},{"name":"Storage Stack","description":"sqlx 0.7→0.8.6 migration, OpenGL/X11 devcontainer, storage observer agent, Porkbun DNS, postgres backup.","type":"recipe"},{"name":"QC flagging tool","description":"Quality control tool for Lean proof inspection with full pass/fail review receipt.","type":"tool"},{"name":"Assumption audit","description":"Full-stack assumption audit across 78 files covering ~280 assumptions.","type":"gate"},{"name":"Deterministic build receipt","description":"3529 jobs, 0 errors build receipt for Lean workspace.","type":"receipt"},{"name":"Physics/RG Flow","description":"BodegaFlow horn-fiber refinements, torsion wall derivation, Higgs calibration, multi-valve cosmological tests.","type":"primitive"},{"name":"Adversarial duals","description":"16D anchor pack with Anti-FAMM and Anti-BraidStorm documentation and runners.","type":"gate"},{"name":"Gate Library","description":"22+ gate types including Sidon Crossing, Golden Braid Centering, Möbius-Apollonius, Chromatic Homotopy Height, Ahmed Integral.","type":"gate"},{"name":"NUVMAP kernel","description":"Formal coordinate projection layer integrated into the stack.","type":"architecture"},{"name":"Triumvirate Kernel","description":"Builder/Judge/Warden consensus with 2/3 fault tolerance.","type":"architecture"},{"name":"GCL Self-Host","description":"Child kernel generation with metaprobe gate and lawful boot.","type":"architecture"},{"name":"LawfulLoss.lean","description":"BindResult structure (Q0_16, substrate-agnostic) for lawful loss tracking.","type":"definition"},{"name":"Claim-state ladder","description":"Progression: BEAUTIFUL_PROVISIONAL → VERIFIED.","type":"pattern"},{"name":"Visual primitive witness","description":"Formalism created and wired into constitution for visual proof witnesses.","type":"primitive"},{"name":"KOTC completion daemon","description":"Design, receipt schema, and simulator for Kinetic Operation Token Completion.","type":"architecture"},{"name":"InvariantReceipt","description":"Constitutional layer with Receipt, Core, Ledger, Status, SubstrateAdapter; Th1/Th2 proven, Th3/Th4/Th5 deferred.","type":"architecture"}],"tags":["changelog","lean-hardening","storage","gates","physics","RG-flow","adversarial","kernel","GCL","NUVMAP","Triumvirate"],"layer":"Documentation","dependencies":[],"summary":"Changelog documenting Lean hardening (sorries closed, bugs fixed), storage stack setup (sqlx, Garage, restic), gate library expansion (22+ adversarial gates), physics/RG flow work, and repository consolidation from April-May 2026."}
{"file":"GETTING_STARTED.md","title":"Getting Started — Observerless Research Stack","concepts":[{"name":"elan","description":"Lean 4 toolchain manager. Project pins Lean at v4.30.0-rc2. Auto-detects lean-toolchain in Semantics/ directory.","type":"tool"},{"name":"lake build","description":"Lean build command. First build pulls mathlib4 and sparkle from GitHub (~5-10 min). Subsequent builds use cached .lake/ directory.","type":"tool"},{"name":"FixedPoint.lean","description":"Q0_16 and Q16_16 hardware-native arithmetic with zero floats.","type":"primitive"},{"name":"BurgersAVM.lean","description":"Verified AVM program for Burgers regularization with correctness theorem.","type":"theorem"},{"name":"SemanticsCli","description":"CLI entry point tying everything together in Main.lean.","type":"tool"},{"name":"PIST-GCL compression demo","description":"4-layer manifold compression pipeline: PIST remap → cognitive routing → delta+Huffman → thermodynamic verify.","type":"recipe"},{"name":"English manifold builder","description":"Compresses English text via grammar-shape coordinates using PIST. Script: redpajama_english_manifold.py.","type":"tool"},{"name":"openworm_benchmark","description":"Lean benchmark executable for OpenWorm simulation performance.","type":"tool"},{"name":"moim_benchmark","description":"Lean benchmark executable for MOIM (Multi-Objective Iterative Method) performance.","type":"tool"}],"tags":["getting-started","lean","lake","elan","build","PIST","GCL","compression","benchmark","setup"],"layer":"Documentation","dependencies":["AGENTS.md","ARCHITECTURE.md"],"summary":"Practical setup guide for the Observerless Research Stack. Covers prerequisites (Lean 4, Python 3.10+, Git), installation, building the Lean core (3,500+ proofs), running PIST-GCL compression demo, English manifold builder, and Lean benchmarks. Includes troubleshooting for common build issues."}
{"file":"REBASE_RULES.md","title":"REBASE RULES — Research Stack Agent / Rules Manifest","concepts":[{"name":"Rebase seed","description":"When starting fresh project map, copy only listed files and rules. Port contracts and rituals, not state.","type":"protocol"},{"name":"Core Operating Contracts","description":"8 files that are source of truth for every agent, skill, and editor hook: AGENTS.md (root), Semantics AGENTS.md, Infrastructure AGENTS.md, Documentation AGENTS.md, CAD AGENTS.md, QC AGENTS.md, Lean Expert AGENTS.md, RRC Operating Contract.","type":"spec"},{"name":"Editor/Agent Configs","description":"Files injecting contracts into editor runtimes: .cursorrules, .devin/config.json, .claude/settings.json, .mcp.json, etc.","type":"spec"},{"name":"Skills manifest","description":"8 skills that must port: lean-proof, contextstream-workflow, research-stack-workflow, headroom, cad, urdf, rrc-compile, rrc-scale-analysis.","type":"spec"},{"name":"MCP Servers","description":"11 MCP servers: contextstream, filesystem, git, fetch, lean, remote-lean-proof, sympy, wolfram-alpha, aws, github, headroom.","type":"tool"},{"name":"Cornfield Concepts","description":"19 archived concepts in extraction/cornfield_concepts.json recoverable via explicit trigger. Each has a silversight_action (promote_to_foundation, port_as_stub, formalize_in_lean, etc.).","type":"primitive"},{"name":"cf_phi_universal","description":"Φ = Σ wᵢ/ln(Nᵢ) — universal field equation. P0 CRITICAL for promotion to foundation.","type":"definition"},{"name":"cf_codebase_memory","description":"FAMM 7-domain bank + thermal + scar + dual-map. Skeleton for SilverSight memory model.","type":"architecture"},{"name":"cf_hachimoji_shell","description":"N=2^m base alphabet, k=⌊n^(1/m)⌋ shell. Physics grounding for SpectralSignature.","type":"definition"},{"name":"cf_coherence_kernel","description":"R_O = 1/7 invariant appearing in two independent contexts.","type":"invariant"},{"name":"DROP list","description":"Items explicitly not to port: consolidation manifests, headroom DBs, stale audits, historical assignment boards.","type":"recipe"}],"tags":["rebase","migration","contracts","skills","MCP","cornfield","recovery","editor-config"],"layer":"Documentation","dependencies":["AGENTS.md"],"summary":"Rebase seed manifest for standing up a new project map. Lists core operating contracts, editor/agent configs, skills, MCP servers, conditional items, and drop list. Includes cornfield recovery manifest with 19 archived concepts and their promotion actions."}
{"file":"TODO_MAP.md","title":"TODO Map — Sovereign Stack / Bodega Kernel","concepts":[{"name":"Equation Forest","description":"Graph of mathematical/model objects. One registry row per equation/model with id, canonical_name, raw_formula, normalized_formula, source, typed_status, proof_status.","type":"architecture"},{"name":"F01–F12","description":"12 foundation kernel signatures: ShannonEntropy, InformationContent, HierarchicalEntropy, CarnotEfficiency, LandauerBound, EnergyBalance, MaxwellDemon, RiemannianDistance, GeodesicConnection, SymplecticGeodesicStep, AggregateLoad, IntrinsicRatio.","type":"primitive"},{"name":"DIAT","description":"Shell/integer coordinate transform: (a,b) → (a,b,ab,a-b) with Q16.16 fixed-point.","type":"algorithm"},{"name":"S3C","description":"Shell/topological codec. Shell-state encoding, topological compression. L(X) = Σ bind(zᵢ).","type":"algorithm"},{"name":"AVMR","description":"Hierarchical vector roll-up from shell coordinates.","type":"algorithm"},{"name":"GWL","description":"Topology / coupling geometry. PacketState 7-tuple, ThroatCondition, NonEuclideanDistance.","type":"algorithm"},{"name":"NII","description":"Prediction-observation surprise core. n_t = o_t - p_t with bounded adaptation update rule.","type":"algorithm"},{"name":"MSNN","description":"Morphic SNN route-prior generator. 16–64 LIF neurons, sparse synapses, STDP-like update.","type":"algorithm"},{"name":"RGFlow","description":"Torsion-generating admissibility gate. LUT-based lawfulness scorer from 18-bit address.","type":"gate"},{"name":"FAMM","description":"Frustration Aligned Memory Management. fammUpdate: State → RouteResult → State with basin/scar/prior operations.","type":"architecture"},{"name":"PIST","description":"Witness / audit surface. witness: Event → ProofStatus → Witness; attest: Witness → Bool.","type":"gate"},{"name":"KOT","description":"Kinetic Operation Token. Action-cost budget for computation.","type":"definition"},{"name":"GCCL-Rep","description":"Representative Bytecode for GCCL transitions.","type":"primitive"},{"name":"O-AMMR","description":"Orthogonal AMMR. Committed QR-basis tree.","type":"algorithm"},{"name":"GCCN","description":"Global Cognitive Consensus Network.","type":"architecture"},{"name":"Substrate VM","description":"Executable ISA / opcode layer. Opcode enum, VMState, step, run, totality + roundtrip theorems.","type":"architecture"},{"name":"Genome18","description":"6 × 3-bit bins → 18-bit address. Formalized in Lean with injective addr function and encoding theorem.","type":"definition"},{"name":"Tang Nano 9K","description":"Proof-of-shape FPGA board. Gowin GW1NR-9C with 614 cells, 53 LUT4, 120 ALU, 3 DFFC. Timing: 162.28 MHz.","type":"tool"},{"name":"NS-MΔ","description":"Nibble-Switched Manifold Delta. Sparse topological update protocol with 4-bit CMYK/Control state bridge. 30x compression.","type":"algorithm"},{"name":"Photonic Witness","description":"Phase H: Perceval witness-grammar encoding of Burgers spectral witness S(x) via photonic circuits.","type":"primitive"},{"name":"RRC Equation Projection","description":"Project equation records into nearest lawful RRC shapes. 250 surfaces projected; 29 CANDIDATE, 249 HOLD.","type":"gate"},{"name":"UART Packet Interface","description":"Host feeds 18-bit route states over UART; FPGA returns verdict + torsion.","type":"protocol"},{"name":"FAMM Scar/Basin LUT","description":"Small RAM (4096 entries × 24 bits) storing torsion, frustration, basin flags on FPGA.","type":"architecture"},{"name":"Eigensolid Convergence Theorem","description":"Proven: braid crossing loop stabilizes. EigensolidConvergence.lean, commit d84569a5.","type":"theorem"},{"name":"Language Transfer Probes","description":"6 formalized modules: MediaTransfer, LanguageTransfer, LanguageZoology, GeneticThermodynamicLimit, ExpandedGeneticAlphabet, GeneticAnchor.","type":"theorem"},{"name":"Thermodynamic Language Probes","description":"4 modules: ThermodynamicLanguage, LandauerShannon, SemanticBasinOverflow, InformationBottleneckLanguage.","type":"theorem"},{"name":"Lean→Verilog Extraction","description":"Formal Lean spec lowers to synthesizable Verilog via codegen or manual extraction.","type":"recipe"},{"name":"Equivalence Checking","description":"Same test vectors run through Lean, Verilog, Python; compare outputs bit-exact.","type":"gate"},{"name":"Standards Conformance","description":"ISO 26262 Safety Case, W3C DID/VC Schema, MPEG-G Adapter, Reproducible Replay Harness.","type":"spec"},{"name":"Vocabulary Lock","description":"Frozen names with required input type, output type, failure mode, witness format for each.","type":"spec"}],"tags":["todo","roadmap","FPGA","Lean","compression","PIST","FAMM","GWL","Genome18","Tang-Nano","UART","photonic","probes","standards"],"layer":"Documentation","dependencies":["AGENTS.md","ARCHITECTURE.md"],"summary":"Comprehensive TODO map spanning phases A-K: equation registry, formal Lean core (F01-F12), compression layer (DIAT/S3C/AVMR), FPGA hardware (Tang Nano 9K + PCIe), surface/interface, integration/testing, infrastructure, adversarial harnesses, and standards conformance. Tracks 60+ items with status, blockers, and dependency graph."}
{"file":"THIRD_PARTY_NOTICES.md","title":"Third-Party Notices","concepts":[{"name":"Harmonic Shape Transform (HST)","description":"External reference for spectral shape coordinates and semantic eigenvector bundle analogies. By Pavel Krahulik. GNU GPL v3 / CC BY-NC 4.0.","type":"primitive"},{"name":"WebGPU Geant4-DNA","description":"External reference for browser-resident WebGPU Monte Carlo track-structure simulation, IRT chemistry, B-DNA SSB/DSB scoring. By Ahmet Baris Gunaydin. MIT.","type":"primitive"}],"tags":["third-party","license","external-reference","HST","WebGPU","Geant4-DNA"],"layer":"Documentation","dependencies":[],"summary":"Records external works cited by Research Stack notes. Harmonic Shape Transform (spectral shape coordinates, GPL v3) and WebGPU Geant4-DNA (browser Monte Carlo simulation, MIT). Neither vendored, imported, nor reimplemented."}
{"file":"LEAD_Q16_16_MIGRATION_GUIDE.md","title":"Microstep Guide for Q16_16 Unification Migration","concepts":[{"name":"PhysicsScalar.Q16_16","description":"UInt32-based Q16_16 variant used by 27 files. Being migrated to canonical FixedPoint.Q16_16.","type":"definition"},{"name":"Type-only migration","description":"Simple migration for files using Q16_16 only as field types: replace imports and open statements.","type":"recipe"},{"name":"Function-using migration","description":"Migration requiring PhysicsScalarBridge for files calling PhysicsScalar functions.","type":"recipe"},{"name":"PhysicsScalarBridge","description":"Compatibility layer with toFixedPoint, fromFixedPoint, add, mul, sub, gt, le, and constants (zero, one, two, etc.).","type":"bridge"},{"name":"Migration phases","description":"Phase 1: type-only files (ManifoldStructures, Errors). Phase 2: simple function usage (BoundaryDynamics, CausalGeometry). Phase 3: complex (PhysicsEuclidean, PhysicsLagrangian).","type":"pattern"}],"tags":["migration","Q16_16","fixed-point","PhysicsScalar","bridge","unification"],"layer":"Core Formalism","dependencies":["AGENTS.md"],"summary":"Microstep guide for migrating files from PhysicsScalar/ElectromagneticSpectrum to canonical FixedPoint Q16_16. Covers pre-migration assessment, type-only migration, function-using migration with bridge, common compilation errors and fixes, and verification steps."}
{"file":"LEAD_Q16_16_MIGRATION_PLAN.md","title":"Q16_16 Migration Plan","concepts":[{"name":"Q16_16 unification","description":"Plan to unify 6 distinct Q16_16 type definitions causing fragmentation across the codebase.","type":"recipe"},{"name":"Migration scope","description":"Phase 2: 17 PhysicsScalar consumers (BoundaryDynamics, CausalGeometry, CosmicStructure, etc.). Phase 3: 17 ElectromagneticSpectrum consumers. Phase 4: eliminate duplicate definitions.","type":"spec"},{"name":"Semantic incompatibility","description":"PhysicsScalar uses unsigned arithmetic, FixedPoint uses signed. Bridge handles conversion but behavior may differ.","type":"invariant"},{"name":"Overflow behavior","description":"Different saturation/clamping strategies between Q16_16 type variants.","type":"invariant"}],"tags":["migration","Q16_16","planning","unification","fixed-point"],"layer":"Core Formalism","dependencies":["LEAD_Q16_16_MIGRATION_GUIDE.md"],"summary":"High-level migration plan for Q16_16 unification. Identifies 6 duplicate definitions, 44+ consumer files, semantic incompatibilities between signed/unsigned variants, and phased approach: compatibility layer → incremental migration → duplicate elimination."}
{"file":"LEAD_Q16_16_UNIFICATION_SUMMARY.md","title":"Q16_16 Type Unification - Analysis and Plan","concepts":[{"name":"6 Q16_16 variants","description":"Canonical (Int, ~421 files), PhysicsScalar (UInt32, 27 files), ElectromagneticSpectrum (UInt32, 17 files), OTOM (struct UInt32), RcloneIntegration (struct Int, 3 files), MetaManifoldProver (Int, 0 files).","type":"definition"},{"name":"PhysicsScalarBridge.lean","description":"Compatibility layer created for migration with conversion functions between PhysicsScalar and canonical FixedPoint.","type":"bridge"},{"name":"Q16_16_Unification_Demo.lean","description":"Demonstration of unification approach.","type":"primitive"},{"name":"Migration benefits","description":"Single source of truth, eliminate code duplication, centralize lemmas/theorems, simplify maintenance, reduce cognitive load.","type":"invariant"}],"tags":["Q16_16","unification","analysis","fixed-point","migration","fragmentation"],"layer":"Core Formalism","dependencies":["LEAD_Q16_16_MIGRATION_GUIDE.md","LEAD_Q16_16_MIGRATION_PLAN.md"],"summary":"Analysis of Q16_16 type fragmentation: 6 distinct definitions across ~468 files. Identifies semantic differences (signed vs unsigned), documents completed work (PhysicsScalarBridge, demo), and outlines three-phase migration plan with risk mitigation."}
{"file":"adversarial-review-self-adapting-fabric.md","title":"Adversarial Review: Self-Adapting Compute Fabric","concepts":[{"name":"Self-adapting compute fabric","description":"Vision for self-healing distributed compute fabric. Review finds 90% aspirational, no MVP, premature abstraction.","type":"architecture"},{"name":"Bootstrap agent critique","description":"Single-shot bootstrap agent fails because nodes reboot, tokens expire, hardware changes, nftables reset. Needs watchdog companion.","type":"invariant"},{"name":"Adaptive scheduler critique","description":"Ray doesn't support dynamic dispatch to specific nodes at call time. Must use resource-constrained @ray.remote with tier fallback.","type":"invariant"},{"name":"FrameDispatcher critique","description":"Currently synchronous Python function on single machine, not distributed. Routes through dict lookup, not scheduler.","type":"invariant"},{"name":"Edge Caddy SPOF","description":"No SSH access to racknerd, kubelet breaks on restart, manually maintained config. Edge should be cattle, not pet.","type":"invariant"},{"name":"Capability Registry SPOF","description":"Trailbase as single database for node registration is single point of failure. k3s API labels already have this data.","type":"invariant"},{"name":"Ray Head HA","description":"Ray head pinned to steamdeck via nodeSelector. Single node failure kills all in-flight tasks and scheduler.","type":"invariant"},{"name":"NodePort allocation","description":"20+ manually assigned NodePort services with no central allocation, collision-prone. Need central YAML, Traefik Ingress, or admission webhook.","type":"invariant"},{"name":"BATCH/WASM tiers","description":"GitHub Actions has no inbound networking; Cloudflare Workers can't do GPU compute. Neither is ready for the proposed workflow.","type":"invariant"},{"name":"Real MVP","description":"Three files: node_watchdog.py (systemd timer), nodepool_watcher.py (k3s Deployment), port-registry.sh (Caddy config). No new databases.","type":"recipe"}],"tags":["adversarial-review","k3s","Ray","distributed","infrastructure","SPOF","bootstrap","scheduler","edge"],"layer":"Infrastructure","dependencies":[],"summary":"Brutally honest adversarial review of a self-adapting compute fabric design. Identifies 10 issues: bootstrap agent needs watchdog, Ray doesn't support dynamic node dispatch, FrameDispatcher isn't distributed, edge Caddy is SPOF, capability registry is SPOF, Ray head has no HA, NodePorts are collision-prone, BATCH/WASM tiers are handwaved, no MVP exists. Proposes 3-file real MVP."}
{"file":"airtable_import_guide.md","title":"Airtable Import Guide for Compute Substrate Research Database","concepts":[{"name":"Compute substrate research database","description":"7-table Airtable database encoding compute substrate research from $10 embedded morphic field computers to EPYC fabric configurations.","type":"architecture"},{"name":"Hardware Substrates","description":"7 compute substrates: Physical Entropy, Harvested Cycles, Display Interface, Empirical Discovery, Coordination, Overkill. With cost/bandwidth/complexity metrics.","type":"primitive"},{"name":"Math Workloads","description":"7 mathematical workloads: Fractal Geometry, Cellular Automata, Game Theory, Soliton Fields, Sidon Sets, Topology. With optimal substrate mapping.","type":"primitive"},{"name":"Performance Metrics","description":"Operations/sec, bytes/sec, ops/$ ratios, power, latency, scalability, efficiency ratings per substrate-workload combination.","type":"primitive"},{"name":"Scaling Analysis","description":"Hardware class evolution from 6502 to EPYC SP5. Sweet spots: ARM1, Core 2, Pi 2W.","type":"primitive"},{"name":"Integration Patterns","description":"6 patterns combining multiple substrates for Embedded, Desktop, Server, Data Center, Research use cases.","type":"primitive"},{"name":"TOSLINK Entropy","description":"Physical optical imperfections as deterministic stochastic channel. Infinite ops/$.","type":"primitive"},{"name":"Spatiotemporal RAM","description":"1km+ fiber spool: light propagation delay = memory addressing. 5μs propagation = 5,000 temporal slots. Zero power storage.","type":"primitive"},{"name":"Menger sponge QR","description":"XOR, bit shifts, addition workload. Perfect for cheap hardware. Cache-friendly, embarrassingly parallel.","type":"algorithm"},{"name":"Distributed quine","description":"s_next(Node_i) = e(Node_j) across network. Communication costs: Λ_net = Λ_local + λ·d_torus.","type":"algorithm"}],"tags":["airtable","compute-substrate","hardware","FPGA","entropy","TOSLINK","spatiotemporal-RAM","Menger","performance","scaling"],"layer":"Mathematical Models","dependencies":[],"summary":"Import guide for an Airtable database encoding compute substrate research. 7 tables covering hardware substrates (TOSLINK entropy, USB-C SFP, PCIe idle cycles, HDMI TMDS abuse), math workloads, performance metrics, scaling analysis (6502 to EPYC), integration patterns, and optimal configurations. Sweet spot: $10-200 range."}
{"file":"woo.md","title":"Claude Code Session Log — Research Stack Setup & Strategy","concepts":[{"name":"ContextStream setup","description":"Fixing half-installed ContextStream: hooks were wired but MCP server never registered with Claude Code. Registered at user scope.","type":"recipe"},{"name":"MCP server registration","description":"Registered lean-lsp, nixos, k8s, arxiv, wolfram-alpha MCP servers. All connected after restart.","type":"recipe"},{"name":"Tiered proof workflow","description":"4-tier attack: Tier 1 tight interactive loop (lean-lsp), Tier 2 cheap breadth (neon Gemma), Tier 3 parallel verification (Ray), Tier 4 frontier tracking (CronJob + Prometheus).","type":"pattern"},{"name":"Nutbreaker prompts","description":"4 single-shot Tier-1 prompts written: SSMS L1 Contraction, AdjugateMatrix cofactor_identity, BraidSpherionBridge repair, BurgersBridge axiom discharge.","type":"recipe"},{"name":"Rainbow Raccoon Compiler (RRC)","description":"Admissibility/receipt gate: every projection gets ACCEPT/HOLD/QUARANTINE backed by payload identity, type witness, residual policy, replay evidence.","type":"gate"},{"name":"RRC corpus status","description":"33,890 equations tagged, mostly LogogramProjection (27,661). 33,885 of 33,890 missing receipt_density axis — corpus stuck at HOLD.","type":"invariant"},{"name":"Erdős #329 synthesis","description":"How dense can an infinite Sidon set be? Erdős–Turán: ≤ 1. Open as of 2026. Ruzsa/Cilleruelo √2−1 exponent is current frontier.","type":"theorem"},{"name":"Singer difference sets","description":"Finite projective geometry construction generating Sidon sets from short programs. Pilatte 2023 solution to Erdős–Sárközy–Sós runs through Singer.","type":"theorem"},{"name":"DualQuaternion braid state","description":"8D structure (two quaternions, 8 Q16_16 components) at BurgersPDE.lean:179. The 0D genus mapping. Energy non-negativity proven.","type":"definition"},{"name":"Burgers→0D braid isomorphism","description":"Proven: any Burgers state maps to a DualQuaternion, the 0D genus acts as fixed point. Central DST theorem in action.","type":"theorem"},{"name":"16D manifold decomposition","description":"V₁₆(k) = q_void(k) ⊕ q_orbit(k) ⊕ q_braid(k) ⊕ η_observer(k). Projects to 4D active chart O₄ = (field, shear, packet, spectral).","type":"architecture"},{"name":"Dimensional Shock Trim (DST)","description":"M₁₆ → A₀ + residual. The 12 remaining dimensions are receipted (Underverse), not discarded.","type":"algorithm"},{"name":"Paint Physics ↔ Linear Algebra","description":"Kubelka-Munk pigment mixing isomorphic to sphere packing in 512-dimensional space. K/S absorption ratio = per-MAC truncation error.","type":"bridge"},{"name":"Kolmogorov 4/5 law ↔ Color gate","description":"Turbulence cascade maps to spectral color classification. Fully developed cascade → Red, Intermittent → Green, Laminar → Blue.","type":"bridge"},{"name":"Jarzynski Equality as gate","description":"Fluctuation theorem from nonequilibrium thermodynamics used as computation admission gate. gateCondition(residual, threshold).","type":"gate"},{"name":"English Word Bonding","description":"CAGE, BRIDGE, CHAIN, SCAR, SALT, RING are formal operators with typed signatures. English morphology becomes a router DSL.","type":"definition"},{"name":"HDMI soliton compute","description":"TMDS lanes repurposed as soliton field parameter transport. Pixel clock = dimensional index. DDC/I2C = ZK proof verification.","type":"primitive"},{"name":"Cancer as compression failure","description":"Oncogene activation = lossy compression, p53 mutation = checksum failure, telomere erosion = broken EOF handling.","type":"bridge"},{"name":"Imaginary Semantic Time (IST)","description":"Staged sequence of strengthening systems addressing Chaitin's incompleteness. Semantic axis indexes certification stages.","type":"definition"},{"name":"Semantic mass numbers","description":"Observer-independent manifold coordinate. Observation = residue class (semantic mod ℓ) at native resolution. No privileged ℓ.","type":"definition"},{"name":"Compression razor","description":"If you can't compress it, you're either doing it wrong or there's something you're not seeing. Valid for math (short channel), bounded by Chaitin for arbitrary strings.","type":"invariant"},{"name":"Framework assessment","description":"Strengths: antibodies (RRC fail-closed), defensible core (transport of structure), tiered prover pipeline. Concerns: axiom budget inconsistency, names claim more than theorems prove, no external interface.","type":"invariant"},{"name":"Research execution plan","description":"5 tracks: A-Substrate (infrastructure), B-Formal debt (nutbreakers), C-Erdős #329 ladder, D-Metamathematical grounding, E-External interface.","type":"recipe"}],"tags":["session-log","RRC","Sidon","Singer","Erdos","DualQuaternion","Burgers","16D","compression","Chaitin","semantic-mass","MCP","ContextStream","nutbreaker","adversarial-review"],"layer":"Documentation","dependencies":["AGENTS.md","ARCHITECTURE.md"],"summary":"Extended Claude Code session log covering ContextStream MCP setup, nutbreaker prompt writing (4 Tier-1 proof targets), Rainbow Raccoon Compiler corpus analysis (33,890 equations, 33,885 at HOLD), Erdős #329 synthesis program, 16D manifold decomposition with DualQuaternion braid state, cross-domain isomorphisms (paint physics, Kolmogorov, cancer, English words, HDMI), Chaitin's incompleteness addressed via imaginary semantic time and semantic mass numbers, framework assessment, and 5-track research execution plan."}
{"file":"6-Documentation/README.md","title":"6-Documentation","concepts":[{"name":"OTOM","description":"Ordered Transformation & Orchestration Model","type":"definition"},{"name":"PIST","description":"Perfectly Imperfect Square Theory","type":"definition"},{"name":"ENE","description":"Endless Node Edges - self-replicating consensus mesh","type":"definition"},{"name":"AMMR","description":"Algebraic Merkle Mountain Range","type":"definition"},{"name":"FAMM","description":"Frustration-Aware Manifold Mesh","type":"definition"},{"name":"SVQF","description":"Spherical Quaternion Vector Field","type":"definition"}],"tags":["documentation","registry","acronyms","architecture"],"layer":"6-Documentation","dependencies":[],"summary":"Top-level documentation directory README. Registers acronyms (OTOM, PIST, ENE, AMMR, FAMM, SVQF, SLUQ, TTM) and maps source papers to destinations."}
{"file":"6-Documentation/ELEVATOR_PITCH.md","title":"Elevator Pitch: Sovereign Stack","concepts":[{"name":"Integer-only compute","description":"Achieving structural data routing using only whole numbers instead of floating-point","type":"primitive"},{"name":"FPGA deployment","description":"Running models on cheap FPGA chips instead of GPUs for near-zero power","type":"architecture"},{"name":"Lean 4 formal verification","description":"3500+ machine-verified proofs ensuring integer engine stability","type":"gate"}],"tags":["elevator-pitch","FPGA","Lean","fixed-point","energy-efficiency"],"layer":"6-Documentation","dependencies":["FixedPoint","Lean 4"],"summary":"Concise pitch: the stack replaces floating-point GPU math with proven-correct integer arithmetic, enabling FPGA deployment at pocket-calculator power levels."}
{"file":"6-Documentation/EXPLANATION_FOR_HUMANS.md","title":"The Sovereign Stack: Explanation for Humans","concepts":[{"name":"Pure Integer Routing","description":"System routes data, compresses, and evaluates logic using only +,-,*,/","type":"primitive"},{"name":"Topological State Machine","description":"A graph router that determines where data goes next","type":"definition"},{"name":"Manifold State Point","description":"An integer index tracking position in the state space","type":"definition"},{"name":"Q16.16 Fixed Point","description":"Fast math trick for fractions without floating-point","type":"definition"},{"name":"Betti Numbers","description":"Loop counter detecting if data router gets stuck in circles","type":"definition"},{"name":"Landauer Compression","description":"Energy cost of erasing memory","type":"definition"}],"tags":["explanation","glossary","Q16_16","fixed-point","accessible"],"layer":"6-Documentation","dependencies":["FixedPoint","Bind"],"summary":"Plain-language translation of academic terms. Maps Topological State Machine to graph router, Manifold State Point to index, Q16.16 to fast fraction math, Betti numbers to loop counters."}
{"file":"6-Documentation/PROJECT_MAP.md","title":"Research Stack Project Map","concepts":[{"name":"bind primitive","description":"Universal lawful translation primitive with cost functions","type":"primitive"},{"name":"Q16_16 fixed point","description":"Hardware-native arithmetic with zero Float in compute path","type":"primitive"},{"name":"PBACS","description":"Canonical state constitution with prohibited-state predicates","type":"definition"},{"name":"AVM ISA","description":"Adaptive Virtual Machine instruction set architecture","type":"architecture"},{"name":"RRC alignment classifier","description":"Rainbow Raccoon Compiler alignment gate","type":"gate"},{"name":"SieveLemmas","description":"Coprime sieve observer with CRT reconstruction","type":"theorem"},{"name":"InteractionGraphSidon","description":"Weak-axis projections with Sidon witness","type":"theorem"},{"name":"SDPVerify","description":"SDP certificate verification engine","type":"tool"}],"tags":["project-map","architecture","Lean","formal-verification"],"layer":"6-Documentation","dependencies":["Bind.lean","FixedPoint.lean","Canon.lean","AVMIsa/Emit.lean","RRC/Emit.lean"],"summary":"High-level pointer from concepts to canonical files. Maps core formalism modules, infrastructure shims, documentation maps, and build gate (3314 jobs, 0 errors)."}
{"file":"6-Documentation/INFRASTRUCTURE.md","title":"Research Stack Infrastructure","concepts":[{"name":"Tailscale Mesh Network","description":"Self-hosted bare metal nodes connected via Tailscale VPN","type":"architecture"},{"name":"k3s Cluster","description":"Lightweight Kubernetes cluster (v1.35.4+k3s1) with Flannel CNI","type":"architecture"},{"name":"Blitter6502OISC","description":"SUBLEQ CPU on FPGA with 4K memory and UART","type":"architecture"},{"name":"Q16 LUT Core","description":"Hardware fixed-point arithmetic unit, 8 ops, 2-stage pipeline","type":"primitive"},{"name":"VCN Compute Substrate","description":"Video-as-compute using GPU hardware encoders for fixed-point vector processing","type":"architecture"},{"name":"Ollama Inference","description":"Local LLM inference serving deepseek-coder-v2:16b","type":"tool"},{"name":"Authentik OIDC","description":"SSO authentication for web endpoints","type":"protocol"},{"name":"Caddy TLS","description":"Porkbun DNS-01 wildcard certificates","type":"protocol"}],"tags":["infrastructure","k3s","FPGA","GPU","Tailscale","Ollama","Authentik"],"layer":"4-Infrastructure","dependencies":["Tailscale","k3s","Tang Nano 9K"],"summary":"Complete infrastructure documentation: 5-node Tailscale mesh, k3s cluster with 7 namespaces, Tang Nano 9K FPGA (Blitter6502OISC), GPU compute via VCN, Ollama serving, and API services."}
{"file":"6-Documentation/FPGA_PROGRAMMING_GUIDE.md","title":"FPGA Programming Guide — SUBLEQ on the Blitter","concepts":[{"name":"SUBLEQ","description":"Subtract and Branch if Less-than-or-Equal to Zero - one instruction set computer","type":"algorithm"},{"name":"Q16 LUT","description":"Hardware fixed-point arithmetic unit with 8 opcodes at 74ns latency","type":"primitive"},{"name":"Voltage Controller","description":"BRAM access mode manager (STORE/COMPUTE/APPROX/MORPHIC)","type":"architecture"},{"name":"Scale Space BRAM","description":"4 Gaussian kernel banks (σ=0.25/0.50/0.75/1.00)","type":"architecture"},{"name":"HiGHS Pivot","description":"3-stage simplex pipeline for hardware LP solving","type":"architecture"},{"name":"UART beacon","description":"Serial communication at 115384 baud for FPGA I/O","type":"protocol"}],"tags":["FPGA","SUBLEQ","Q16_16","Tang-Nano-9K","hardware","blitter"],"layer":"4-Infrastructure","dependencies":["Blitter6502OISC","Q16_16"],"summary":"Complete programming guide for the SUBLEQ CPU on Tang Nano 9K. Covers instruction format, memory map, Q16 LUT operations, voltage controller, scale space, HiGHS pivot registers, and example programs."}
{"file":"6-Documentation/API_DOCS.md","title":"API Documentation — Research Stack Services","concepts":[{"name":"Credential Server","description":"Token issuance and validation service","type":"tool"},{"name":"Registry API","description":"Artifact registration with type/since/limit filtering","type":"tool"},{"name":"Jobs API","description":"Lean build job management with SSE log streaming","type":"tool"},{"name":"Blobs API","description":"Binary blob storage with SHA-256 verification","type":"tool"},{"name":"Authentik OIDC","description":"OpenID Connect provider for SSO","type":"protocol"}],"tags":["API","REST","k3s","authentication","services"],"layer":"6-Documentation","dependencies":["Authentik","k3s"],"summary":"Full REST API documentation for Credential Server, Registry API, Jobs API, and Blobs API. Includes Authentik OIDC configuration, rate limits, and response codes."}
{"file":"6-Documentation/DISASTER_RECOVERY.md","title":"Disaster Recovery — Research Stack","concepts":[{"name":"etcd snapshot","description":"k3s cluster state backup via etcd-snapshot save","type":"recipe"},{"name":"FPGA bitstream recovery","description":"Rebuild and re-flash from git repo source","type":"recipe"},{"name":"age key backup","description":"sops-nix encryption key backup and restore","type":"recipe"},{"name":"Recovery priority order","description":"Tailscale → Git → age keys → k3s → DNS → FPGA → Services","type":"recipe"}],"tags":["disaster-recovery","backup","k3s","FPGA","Tailscale","sops"],"layer":"6-Documentation","dependencies":["k3s","Tailscale","sops-nix"],"summary":"Backup and restore procedures for all stack components. Defines recovery priority order (Tailscale first, then Git, age keys, k3s, DNS, FPGA, services) with full system checklist."}
{"file":"6-Documentation/RUNBOOK.md","title":"Ops Runbook — Research Stack","concepts":[{"name":"k3s cluster ops","description":"Start/stop, health check, restart pods, view logs","type":"recipe"},{"name":"FPGA flash procedure","description":"Build, flash via USB-JTAG, verify LEDs and UART","type":"recipe"},{"name":"Tailscale funnel","description":"Edge node funnel routing to Traefik NodePort","type":"recipe"},{"name":"GPU monitoring","description":"nvidia-smi checks and Ollama model management","type":"recipe"},{"name":"Escalation matrix","description":"First response → escalation path for each failure type","type":"recipe"}],"tags":["runbook","operations","k3s","FPGA","Tailscale","GPU","DNS"],"layer":"6-Documentation","dependencies":["k3s","Tailscale","Tang Nano 9K"],"summary":"Quick-reference operational procedures for k3s, FPGA, Tailscale, GPU, and DNS. Includes common failures (CrashLoopBackOff, FPGA unresponsive, Tailscale tunnel down) and escalation matrix."}
{"file":"6-Documentation/16D_YANG_COLUMN_RIGOR.md","title":"Rigorization of the 16D Rotation / Yang Column Formalism","concepts":[{"name":"Kähler vector space","description":"ℝ¹⁶ as ℂ⁸ with almost-complex structure J, metric g, symplectic form ω","type":"definition"},{"name":"Two-out-of-three theorem","description":"O(16) ∩ Sp(16,ℝ) ∩ GL(8,ℂ) = U(8); any two of {g,ω,J} imply the third","type":"theorem"},{"name":"Golden spiral map","description":"S(z) = c + φ⁻¹e^{iθ_g}(z−c) - simultaneous contraction and 16D rotation","type":"algorithm"},{"name":"Yang column","description":"U(1) vortex/flux tube with quantized winding number","type":"definition"},{"name":"Cauchy-Riemann ⟺ J-equivariance","description":"Holomorphic motion and Kähler compatibility are the same condition","type":"theorem"},{"name":"Even unimodular lattices","description":"E₈⊕E₈ and D₁₆⁺ as the two 16D even unimodular lattices","type":"definition"},{"name":"Moran equation","description":"N·(φ⁻¹)^D = 1 gives attractor dimension D = ln N / ln φ","type":"theorem"},{"name":"Wilson plaquette","description":"Integer-native lattice gauge theory: F_p = Σ_{e∈∂p} A_e","type":"primitive"}],"tags":["16D","Kähler","Yang-column","golden-spiral","lattice","topology","formal-math"],"layer":"0-Core-Formalism","dependencies":["FixedPoint","Q16_16","PhiNUVMAP","Goxel16D","Law15"],"summary":"Rigorous mathematical foundation for 16D rotation: Kähler structure, golden spiral map with φ²·ULP drift bound, Yang column as quantized flux tube, Cauchy-Riemann equivalence, even unimodular lattices (E₈⊕E₈, D₁₆⁺), and chaos-game dimension budget."}
{"file":"6-Documentation/calculator_plain_math.md","title":"Calculator-Plain Math: The Entire Research Stack","concepts":[{"name":"Nibble Switch","description":"4-bit transition atom: nibble = control * 4 + domain","type":"primitive"},{"name":"Manifold State Point","description":"Locus update with curvature EMA: new = 0.7*old + 0.3*target","type":"primitive"},{"name":"Shannon Entropy","description":"H = Σ -p*log2(p) measuring unpredictability","type":"algorithm"},{"name":"Power-Law Fit","description":"Zipf exponent: alpha = 1 + N / sum(log(rank/count))","type":"algorithm"},{"name":"Hutter Prize Score","description":"C = (0.4*C_comp + 0.35*C_phys + 0.25*C_geom) * (S/(G+F))","type":"algorithm"},{"name":"Betti Numbers","description":"Topological invariants: β₀ connected components, β₁ loops, χ = V-E+F","type":"definition"}],"tags":["math","accessible","calculator","compression","entropy","topology"],"layer":"6-Documentation","dependencies":[],"summary":"Every equation in the project reduced to +,-,*,/,^,log. Covers Nibble Switch, Manifold State Point, Shannon Entropy, Power-Law Fit, Hutter Score, Grand Compression Equation, Betti Numbers, and Cache Statistics. A high school student could verify every number."}
{"file":"6-Documentation/conformance/iso_26262_hara_fmea.md","title":"ISO 26262 Safety Case: Q16_16 Fixed-Point Core & TSM","concepts":[{"name":"HARA","description":"Hazard Analysis and Risk Assessment for Q16_16 arithmetic subsystem","type":"gate"},{"name":"FMEA","description":"Failure Mode and Effects Analysis at software/hardware boundary","type":"gate"},{"name":"ASIL D","description":"Highest automotive safety integrity level classification","type":"definition"},{"name":"TSM","description":"Topological Safety Monitor with Builder/Warden/Judge clock domains","type":"architecture"},{"name":"Arithmetic Saturation Overflow","description":"HAZ-01: Results exceed bounds causing step discontinuities","type":"definition"},{"name":"Zero-Denominator Divergence","description":"HAZ-02: Division by zero/near-zero in Cramer solver","type":"definition"},{"name":"TSM Domain Desynchronization","description":"HAZ-03: Clock domain misalignment causing stale feedback","type":"definition"}],"tags":["ISO-26262","safety","ASIL-D","HARA","FMEA","Q16_16","TSM"],"layer":"6-Documentation","dependencies":["FixedPoint","TSM.lean","Cramer4D"],"summary":"Automotive-grade safety case (ASIL D) for Q16_16 and TSM. Identifies 3 hazards (arithmetic overflow, zero-denominator, clock desynthesis), provides FMEA with diagnostic coverage, and links to Lean formal mitigations."}
{"file":"6-Documentation/invention_record/INVENTION_ARCHITECTURE.md","title":"RGFlow: Event-Genome Lawfulness Filter","concepts":[{"name":"RGFlow Filter","description":"Formal informatic membrane isolating scale-stable mathematical structure from noise","type":"architecture"},{"name":"Unified Adaptation Engine","description":"6D quantized manifold evaluating informatic genome fitness","type":"architecture"},{"name":"AVMR Spectral Audit","description":"Genetic-code-derived mapping detecting mathematical constants via signature density","type":"algorithm"},{"name":"Scale-Persistence Predicate","description":"RGFlow operator requiring information stability across abstraction steps","type":"gate"},{"name":"Blind Detection Theorem","description":"Formal proof of rejection of all non-scale-coherent phases","type":"theorem"}],"tags":["invention","RGFlow","information-theory","formal-verification","spectral"],"layer":"6-Documentation","dependencies":["KillerCriterion.lean","SabotagePrevention.lean"],"summary":"Invention record for RGFlow filter: a formal membrane that isolates scale-stable mathematical structure from cryptographic noise. Tested blind on 1M-bit stream with zero false positives. Lean 4 formal proof included."}
{"file":"6-Documentation/security/dependabot-alert-exceptions-2026-05-12.md","title":"Dependabot Alert Exceptions - 2026-05-12","concepts":[{"name":"Transitive dependency exceptions","description":"Blocked upstream constraints preventing direct dependency updates","type":"receipt"},{"name":"ml-dsa exception","description":"servo-script requires ml-dsa ^0.0.4; patched 0.1.0-rc.5 incompatible","type":"receipt"},{"name":"glib exception","description":"Tauri/GTK stack pins glib v0.18.5; direct 0.20 update rejected","type":"receipt"},{"name":"thrift exception","description":"parquet depends on thrift v0.17.0 with no patched release","type":"receipt"}],"tags":["security","dependabot","Cargo","transitive-deps","exceptions"],"layer":"6-Documentation","dependencies":["servo-fetch","Cargo.lock"],"summary":"Ledger of remaining Dependabot alerts after direct dependency updates. 5 tracked transitive exceptions (ml-dsa, rand, glib, thrift) with blocker chains, local mitigations, and unblock conditions."}
{"file":"6-Documentation/reviews/ene-rds-rust-workspace-review-2026-05-19.md","title":"ENE-RDS Rust Workspace — Multi-Agent Review Report","concepts":[{"name":"ene-rds-core","description":"Rust crate for RDS database operations with TLS and Q16_16 arithmetic","type":"tool"},{"name":"ene-node","description":"Rust crate for distributed ENE node with UDP gossip and HMAC-SHA256","type":"tool"},{"name":"Hash-chain receipts","description":"SHA-256 receipt chain with parent links for auditability","type":"receipt"},{"name":"2/3 majority consensus","description":"BFT consensus threshold: (total * 2) / 3","type":"protocol"}],"tags":["review","Rust","ENE","consensus","security","Q16_16"],"layer":"4-Infrastructure","dependencies":["ene-rds","ene-node","Q16_16"],"summary":"Multi-agent review of 8-crate Rust workspace. Build PASS, Security CONDITIONAL PASS (TLS + HMAC gossip fixed), Correctness PASS WITH NOTES, Documentation PASS. Zero unsafe blocks, Q16_16 arithmetic correct, hash-chain receipts verified."}
{"file":"6-Documentation/docs/specs/SilverSight_Spec.md","title":"SilverSight Specification","concepts":[{"name":"SilverSight","description":"Clean-slate successor to Research Stack: substrate-agnostic compute fabric","type":"architecture"},{"name":"Schema/Layout/WireFormat","description":"Three-layer separation: schema defines size, layout defines encoding, WireFormat certifies roundtrip","type":"definition"},{"name":"DynamicCanal","description":"Physical instantiation abstraction (1-Wire, PCIe, DRAM, JSON)","type":"architecture"},{"name":"Claim-state ladder","description":"BEAUTIFUL_PROVISIONAL → CALIBRATED_ENGINEERING_DELTA → REVIEWED → VERIFIED","type":"gate"}],"tags":["SilverSight","architecture","YaFF","Lean","clean-slate","substrate-agnostic"],"layer":"0-Core-Formalism","dependencies":["FixedPoint","Bind","AVMIsa"],"summary":"Clean-slate successor keeping formally verified concepts while discarding duplication. Every concept has a stable ID, Lean definition, and receipt. All decisions in Lean; Python/Rust/Verilog are extraction targets only."}
{"file":"6-Documentation/docs/specs/virtio_net_compute_fabric_spec.md","title":"Virtio-Net DMA Compute Fabric & Packet-as-Computation (PIST)","concepts":[{"name":"PistPacket","description":"Compute frame with Ethernet header, computation_id, coordinate_path, witness_hash, and Q16_16 payload","type":"definition"},{"name":"Toeplitz RSS","description":"NIC hardware RSS exploited as binary matrix-vector convolution at line rate","type":"algorithm"},{"name":"Packet-as-computation","description":"Ethernet packets are computation state capsules, not serialized payloads","type":"architecture"},{"name":"Coordinate path","description":"QuadTree addressing for spatial partitioning encoded in packet header","type":"definition"}],"tags":["virtio-net","DMA","PIST","networking","hardware-offload","Toeplitz"],"layer":"4-Infrastructure","dependencies":["Q16_16","PIST"],"summary":"Treats virtualized Ethernet as high-throughput, zero-copy DMA computation backplane. Maps NIC ASICs (RSS, TSO, FCS) to linear algebra operators. Packets carry computation state, not serialized payloads."}
{"file":"6-Documentation/docs/specs/vectorless_technical_review_response.md","title":"Vectorless Spatial Hash Architecture - Technical Review Response","concepts":[{"name":"Spatial hash codec","description":"Morton code (Z-order) preserving semantic locality for vectorless storage","type":"architecture"},{"name":"Voltage mode classifier","description":"Lean-owned decision logic with Python wrapper only","type":"gate"},{"name":"Q0_16/Q16_16 internal arithmetic","description":"All internal arithmetic uses fixed-point, no Float in compute paths","type":"primitive"}],"tags":["spatial-hash","review","Lean","fixed-point","Morton-code"],"layer":"4-Infrastructure","dependencies":["Q16_16","SpatialHashCodec"],"summary":"Technical review corrections: moved decision logic from Python to Lean, fixed Lean/Python semantic drift, confirmed Morton code locality, enforced Q0_16/Q16_16 internal arithmetic."}
{"file":"6-Documentation/docs/specs/unified_manifold_blit_equation.md","title":"Unified Manifold-Blit Equation","concepts":[{"name":"Manifold-Blit Equation","description":"M_{k+1}(x) = Quant_LLM(J_DAG[M_k ⊕ (Ψ_q ⊗ R_RT(f,ε_TCP))])","type":"definition"},{"name":"Blitter Operator","description":"Hardware-accelerated bitwise accumulation (discrete Picard integral)","type":"primitive"},{"name":"DAG-LUT","description":"Hash check + teleport short-circuit for solved states","type":"primitive"},{"name":"Quantum Walk Amplitude","description":"Superposition of potential paths for quadratic convergence","type":"algorithm"}],"tags":["manifold","blitter","quantum","GPU","Picard-iteration","DAG-LUT"],"layer":"0-Core-Formalism","dependencies":["AVMR.lean","Blitter6502OISC"],"summary":"Unified equation combining DAG-LUT short-circuiting, quantum sampling, drift correction, and blitter accumulation. Claims O(1) complexity (speed of a Bit-Blit) vs traditional O(n²) Picard iteration."}
{"file":"6-Documentation/docs/specs/tag-addressable-compute-fabric.md","title":"Tag-Addressable Compute Fabric (TACF)","concepts":[{"name":"Tag rings","description":"6 channels (STRAND, CROSSING, PIST, LUPINE, VAAPI, FLAC) for work dispatch","type":"architecture"},{"name":"Copy-if pattern","description":"Content-addressed Ray ObjectRef: same payload = same hash = no copy","type":"pattern"},{"name":"HEP as LUT","description":"Hardware capability as tag subscription table, not device tree","type":"pattern"},{"name":"Node self-selection","description":"Nodes subscribe to tags they can handle; no scheduler or registry","type":"architecture"}],"tags":["TACF","distributed","compute-fabric","tags","Ray","virtio"],"layer":"4-Infrastructure","dependencies":["Ray","Tailscale","FrameDispatcher"],"summary":"Ground-up distributed compute design: work published to tag rings, nodes self-select based on capability. 6 tags, 5 primitives (Tag, Subscription, Descriptor, Ring, LUT). No scheduler, no registry, no health monitor."}
{"file":"6-Documentation/docs/specs/self-adapting-compute-fabric.md","title":"Self-Adapting Compute Fabric","concepts":[{"name":"Node Bootstrap Agent","description":"One-shot node initialization: tailscale_up → detect_hardware → build_labels → register → join_k3s","type":"recipe"},{"name":"Capability Registry","description":"Node capability auto-detection and k3s label generation","type":"architecture"},{"name":"Adaptive Scheduler","description":"Orchestrator engine routing based on node capabilities","type":"architecture"}],"tags":["self-adapting","k3s","Tailscale","auto-discovery","distributed"],"layer":"4-Infrastructure","dependencies":["k3s","Tailscale","Ray"],"summary":"Design for automatic adaptation to node changes (churn, scaling, degradation). Node Bootstrap Agent auto-detects hardware, generates k3s labels, and joins cluster. Orchestrator routes based on capabilities."}
{"file":"6-Documentation/docs/specs/sdta_spec.md","title":"Semantic Degenerate Tensor Adapter (SDTA) Specification","concepts":[{"name":"SDTA","description":"Structural reformulation of NP-hard search as deformation theory over ZIM eigensolid","type":"architecture"},{"name":"Portability coefficient η","description":"‖Π_D A Π_D†‖_F / ‖A‖_F measuring problem structure in degenerate subspace","type":"definition"},{"name":"DegenerateChart","description":"Chart where eigensolid is degenerate (Laplace instead of Helmholtz)","type":"definition"},{"name":"SMN","description":"Semantic Mass Number measuring structural load","type":"definition"}],"tags":["SDTA","NP-hard","tensor","deformation","eigensolid","complexity"],"layer":"0-Core-Formalism","dependencies":["Q16_16","FixedPoint"],"summary":"Reformulates NP-hard search as deformation theory. Key insight: 'impossible' ≠ ∞, it means NaN (coordinate failure). Portability coefficient η measures how much structure survives degenerate projection."}
{"file":"6-Documentation/docs/specs/quantization.md","title":"Quantization Specification","concepts":[{"name":"Ternary weight quantization","description":"RoundClip(W/(γ+ε), -1, 1) → {-1, 0, 1} for 10× memory reduction","type":"algorithm"},{"name":"BitLinear activation","description":"Clip(x × Q_b/(η+ε)) preserving dynamic range","type":"algorithm"},{"name":"MLGRU recurrence","description":"h_t = f_t ⊙ h_{t-1} + (1-f_t) ⊙ c_t - no matrix multiplication","type":"algorithm"},{"name":"Ternary packing","description":"2 bits per weight, 4 weights per byte, ~10× reduction with overhead","type":"primitive"}],"tags":["quantization","ternary","neural-network","WebGPU","MLGRU","memory-reduction"],"layer":"0-Core-Formalism","dependencies":["Q16_16","FixedPoint"],"summary":"Ternary weight quantization achieving 10× memory reduction vs FP16. Includes BitLinear activation scaling and MLGRU (MatMul-free) recurrence reducing computation from O(d²) to O(d)."}
{"file":"6-Documentation/docs/specs/lonely_runner_betti_mapping.md","title":"Lonely Runner Conjecture — Betti-2 Topological Obstruction Mapping","concepts":[{"name":"Lonely Runner Conjecture","description":"For k runners with distinct speeds, ∃t where min_i dist(v_i*t, 0) ≥ 1/(k+1)","type":"theorem"},{"name":"Coverage density Φ","description":"Σ 1_{B(v_i*t,δ)}(θ) measuring runner illumination at angle θ","type":"definition"},{"name":"Scar region M_t","description":"Uncovered set where Φ(t,θ) = 0 (loneliness field)","type":"definition"},{"name":"NK-Hodge-FAMM mapping","description":"Isomorphism between lonely runner structure and FAMM components","type":"theorem"}],"tags":["lonely-runner","Betti","topology","FAMM","conjecture","NK-Hodge"],"layer":"0-Core-Formalism","dependencies":["FAMM","Betti"],"summary":"Maps the Lonely Runner Conjecture to NK-Hodge-FAMM topological obstruction framework. Establishes isomorphism: runner speeds ↔ velocity field, coverage density ↔ photon field, scar ↔ loneliness. Does not prove the conjecture."}
{"file":"6-Documentation/docs/specs/cole_hopf_vorticity_resolution.md","title":"Cole-Hopf + Vorticity Tension: Rigorous Resolution","concepts":[{"name":"Cole-Hopf transformation","description":"u = -2ν₀·∇(ln Φ) mapping velocity to heat equation","type":"theorem"},{"name":"Vorticity tension","description":"Cole-Hopf velocity is irrotational (∇×u=0) yet NS requires ω≠0","type":"definition"},{"name":"Hodge decomposition resolution","description":"Full state is DualQuaternion Q=(Q₁,Q₂)∈ℝ⁸, not just (u,Φ)","type":"theorem"},{"name":"DualQuaternion","description":"Q₁×Q₂ = ℝ⁴×ℝ⁴ bridging Burgers PDE and braid algebra","type":"definition"}],"tags":["Burgers","Cole-Hopf","vorticity","Navier-Stokes","Hodge","DualQuaternion"],"layer":"0-Core-Formalism","dependencies":["ColeHopfTransform.lean","BurgersPDE.lean","BettiSwoosh"],"summary":"Resolves the apparent contradiction: Cole-Hopf makes velocity irrotational but NS needs vorticity. Resolution: full state is DualQuaternion in ℝ⁸, enabling Hodge decomposition with non-zero curl component."}
{"file":"6-Documentation/docs/specs/WitnessGrammar.md","title":"Witness Grammar Specification","concepts":[{"name":"Witness Grammar","description":"Finite symbolic source code recovered from a field (frequency, amplitude, phase, routing role)","type":"definition"},{"name":"Equation Sniffer","description":"Sniffs witness grammars (not raw data) to suggest routing","type":"algorithm"},{"name":"Market-Data Bridge","description":"Same pipeline applied to price/volume/news for behavioral operator classification","type":"architecture"}],"tags":["FNWH","witness-grammar","signal-processing","equation-sniffer","market-data"],"layer":"0-Core-Formalism","dependencies":["FNWH","MassNumberField","BHOCS"],"summary":"FNWH decompiles fields into witness grammars; Equation Sniffers compare grammars; market filter searches for shared behavioral operators. Defines the pipeline: raw field → FNWH peeling → WitnessGrammar → EquationSniffer → route."}
{"file":"6-Documentation/docs/specs/UNIVERSE_MODEL_ORBIT_ZOOM_PROTOCOL.md","title":"Universe Model Orbit-Zoom Protocol","concepts":[{"name":"Orbit View","description":"Classify problem at orbit height using unified equation as orbital map","type":"recipe"},{"name":"Zoom Ladder","description":"L0 Orbit → L1 Region → L2 State → L3 Derivation → L4 Receipt → L5 Gate","type":"gate"},{"name":"Torsional fluid baseline","description":"Assigned vs derived values distinction in torsional PIST","type":"definition"}],"tags":["universe-model","orbit-zoom","protocol","classification","receipt"],"layer":"6-Documentation","dependencies":["TorsionalPIST","UnifiedEquation"],"summary":"Navigation and receipt protocol for mapping problems into mathematical continents. Defines orbit view (classify at height) and zoom ladder (orbit → region → state → derivation → receipt → gate). Key distinction: assigned vs derived values."}
{"file":"6-Documentation/docs/specs/UNIFIED_TRANSPORT_ENCODING_SPEC.md","title":"Unified Transport Encoding Architecture","concepts":[{"name":"TMDS Lane Encoding","description":"Wire encoding over GPU display controller for DP/HDMI PHY","type":"protocol"},{"name":"VCN Video Encoding","description":"RDMA payload packed into H.265 video frames via hardware encode/decode","type":"protocol"},{"name":"Mesh Multi-Transport Routing","description":"Transport selection, fragmentation, multi-hop relay, fallback","type":"architecture"},{"name":"Unified envelope","description":"[tag(1)] + [transport header] + [RDMANetHeader(41)] + [payload]","type":"definition"}],"tags":["transport","encoding","HDMI","VCN","RDMA","mesh","multi-transport"],"layer":"4-Infrastructure","dependencies":["VCN","RDMANet","HDMI"],"summary":"Three-agent transport architecture: TMDS lane encoding (HDMI/DP PHY), VCN video encoding (Steam Deck MKV trick), and mesh multi-transport routing. Defines unified envelope wire format and fragment headers."}
{"file":"6-Documentation/docs/specs/UNIFIED_SIGNAL_ARCHITECTURE.md","title":"Unified Signal Architecture — DisplayPort × Audio × FPGA","concepts":[{"name":"NUVMAP Texel Stream","description":"PIST → Cayley V4 → braid/rope encoding across three hardware pathways","type":"architecture"},{"name":"DisplayPort 8K60","description":"33.18M texels/frame, 4 lanes carrying φ-phase, amplitude, tensor, witness","type":"architecture"},{"name":"PipeWire Audio","description":"192kHz/24-bit with TSM thermal (left), waveprobe (right), GCL delta (center)","type":"architecture"},{"name":"Unified Frame Sync","description":"DP VSYNC = audio buffer swap; VBLANK = TVI samples + audio FFT bins","type":"protocol"}],"tags":["signal","DisplayPort","audio","FPGA","texel","unified-architecture"],"layer":"4-Infrastructure","dependencies":["NUVMAP","PIST","TSM","Tang Nano 9K"],"summary":"Bridges DisplayPort 8K60, PipeWire 192kHz audio, and FPGA Tang Nano 9K into one texel state machine. DP lanes carry φ-phase/amplitude/tensor/witness; audio carries TSM thermal/waveprobe/GCL delta."}
{"file":"6-Documentation/docs/specs/Two_Layer_Kinetic_Sidon_Lattice_v0_1.md","title":"Two-Layer Kinetic Sidon Lattice v0.1","concepts":[{"name":"Kinetic lattice","description":"Layer 0: local motion, energy, phase-clock, update dynamics","type":"architecture"},{"name":"Sidon relational lattice","description":"Layer 1: pair signatures, anti-aliasing, addressable relational channels","type":"architecture"},{"name":"KineticToSidonFlow","description":"Kinetic flux produces Sidon pair signatures","type":"definition"},{"name":"SidonToKineticFlow","description":"Sidon addresses feed back into kinetic updates","type":"definition"}],"tags":["Sidon","lattice","kinetic","two-layer","anti-alias"],"layer":"0-Core-Formalism","dependencies":["Sidon","BraidStorm"],"summary":"Two coupled layers: kinetic (motion/energy) and Sidon (pair-address routing). Sidon sets flow between layers rather than being static. Gives motion with addressability, coherence without alias collapse."}
{"file":"6-Documentation/docs/specs/TOPOLOGICAL_BRAID_ADAPTER_SPEC.md","title":"Topological Braid Adapter Specification: Fibonacci Anyon Isomorphism","concepts":[{"name":"TopologicalBraidAdapter","description":"Mathematical bridge showing HydrogenicPhiTorsionBraid is isomorphic to Fibonacci Anyon System","type":"bridge"},{"name":"ColorRope → DualQuaternion","description":"CMYK channels map to dual quaternion coordinates (Zhang et al.)","type":"bridge"},{"name":"stairIndex → SLUG3State B_3 Word","description":"Crossing events map to braid group generators (Rouabah)","type":"bridge"},{"name":"tensegrityCoherent → Yang-Baxter","description":"Static equilibrium is isomorphic to Yang-Baxter equation","type":"bridge"},{"name":"Fibonacci Anyon System","description":"Topological quantum computing with anyon fusion and braiding","type":"definition"}],"tags":["braid","Fibonacci-anyon","topology","Yang-Baxter","DualQuaternion","quantum"],"layer":"0-Core-Formalism","dependencies":["HydrogenicPhiTorsionBraid","SLUG3","UnitQuaternion","GoldenRatioSeparation"],"summary":"Establishes 5 isomorphisms between Research Stack constructs and Fibonacci Anyon System: ColorRope↔DualQuaternion, stairIndex↔B₃ word, tensegrityCoherent↔Yang-Baxter, phi_pow↔braid matrices, Zeckendorf↔fusion tree."}
{"file":"6-Documentation/docs/specs/TINY_IP_CONTIKI_SURFACE_SPEC.md","title":"Tiny IP Surface Spec","concepts":[{"name":"Cooperative event loop","description":"Contiki-inspired cooperative processes for embedded nodes","type":"architecture"},{"name":"Fixed packet buffers","description":"96-byte MTU, 4 RX/TX buffers for constrained systems","type":"primitive"},{"name":"Omnitoken shell","description":"Shell layer moving admitted scalars between observer charts","type":"architecture"},{"name":"Admission before expansion","description":"Node refuses work before payload expansion if buffers full","type":"gate"}],"tags":["embedded","Contiki","Omnitoken","tiny-IP","constrained","shell"],"layer":"4-Infrastructure","dependencies":["Omnitoken","GCL"],"summary":"Contiki-inspired shell for embedded GCL/Omnitoken nodes. Cooperative event loop, fixed 96-byte MTU packet buffers, timers instead of blocking, admission before payload expansion."}
{"file":"6-Documentation/docs/specs/SYMBOLOGY_DERIVED_LOGOGRAM_DESIGN.md","title":"Symbology-Derived Logogram Design","concepts":[{"name":"Safe quarry rule","description":"Borrow compression principle, not protected symbol identity","type":"gate"},{"name":"Omindirection atoms","description":"Original atoms with explicit direction/chirality/phase/placement","type":"definition"},{"name":"Source classes","description":"9 inspiration classes: array langs, code-golf, math notation, shorthand, logographic, syllabaries, ancient, constructed, specialist","type":"definition"},{"name":"Borrowable principles","description":"denseOperator, modifierFamily, customCodePage, residualOmission, radicalComposition, etc.","type":"definition"}],"tags":["logogram","symbology","Omindirection","compression","design-grammar"],"layer":"6-Documentation","dependencies":["SymbologyBorrowing.lean","Omindirection"],"summary":"Defines safe extraction of compression principles from dense symbolic systems (APL, Hanzi, Hangul, Cuneiform, etc.) into original Omindirection atoms. Rule: borrow the compression principle, not the protected symbol identity."}
{"file":"6-Documentation/docs/specs/SSMS_nD_FUNCTIONAL_SPEC.md","title":"Functional Specification: SSMS-nD","concepts":[{"name":"SSMS-nD","description":"Scalar State Manifold Segmentation with variable dimension n∈[1,N_max]","type":"architecture"},{"name":"Sequential Lifting Operator","description":"L_{1D→n}: lifts 1D sequence into ℝ^n via learned coordinate chart","type":"algorithm"},{"name":"Dynamic n selection","description":"n = argmin[‖L_n(I) - Prompt(I)‖² + λ·Complexity(n')]","type":"algorithm"},{"name":"OISC architecture","description":"One Instruction Set Computer operating on dynamic n-manifold","type":"architecture"},{"name":"Holonomic constraints","description":"Linear via ACI, nonlinear via Lagrange multipliers in V_M","type":"definition"}],"tags":["SSMS","manifold","OISC","object-detection","variable-dimension"],"layer":"0-Core-Formalism","dependencies":["Q16_16","OISC"],"summary":"Promptable object detection on dynamic n-manifolds. Lifts 1D sequences into variable-dimensional spaces using ternary-quantized lifting operators. OISC architecture with holonomic constraints."}
{"file":"6-Documentation/docs/specs/SMN_SEMANTIC_MASS_NUMBERS.md","title":"SMN: Semantic Mass Numbers","concepts":[{"name":"SMN","description":"Semantic load carried by a symbol inside the stack (not atomic mass)","type":"definition"},{"name":"Semantic Mass pipeline","description":"semantic mass pressure → SMN score → optional Mass Number packet → admissibility receipt","type":"pipeline"},{"name":"SMN formula","description":"identity_load + relation_load + provenance_load + constraint_load + decision_load + repair_load","type":"definition"}],"tags":["SMN","semantic-mass","routing","admissibility"],"layer":"0-Core-Formalism","dependencies":["MassNumber","BHOCS"],"summary":"Defines Semantic Mass Number as a project-local semantic-load measure. SMN measures how heavy a symbol is inside the model. Pipeline: pressure → SMN score → Mass Number packet → admissibility receipt."}
{"file":"6-Documentation/docs/specs/SEMANTIC_ENGINE_BINDING_DERIVATION_WORKBENCH.md","title":"Semantic Engine Binding Derivation Workbench","concepts":[{"name":"Conceptual binding","description":"Relation making a semantic engine useful (document→chunk, chunk→embedding, etc.)","type":"definition"},{"name":"Research Stack re-derivation","description":"Every external binding rebuilt through bind, ConceptVector14, Address-First Search","type":"recipe"},{"name":"ENE plugin connector","description":"hotswap plugin: scan → plan → commit → verify","type":"recipe"}],"tags":["semantic-engine","binding","ENE","derivation","methodology"],"layer":"6-Documentation","dependencies":["bind","ConceptVector14","ENE"],"summary":"Design method for inspecting MIT-licensed semantic engines, identifying minimum conceptual bindings, and rederiving them from Research Stack primitives. Keeps the path clean: external engine → observation → local primitive → ENE plugin."}
{"file":"6-Documentation/docs/specs/Receipt_Core_Infrastructure_v0_1.md","title":"Receipt Core Infrastructure v0.1","concepts":[{"name":"Receipt infrastructure","description":"Safety and evidence-routing layer: executable → benchmark → adversarial-trial → candidate → proof receipt → reviewed","type":"architecture"},{"name":"Proof receipt gate","description":"CANDIDATE + non-proof evidence ≠ REVIEWED; CANDIDATE + proof receipt may promote","type":"gate"},{"name":"InvariantReceipt","description":"Lean receipt type preventing self-promotion","type":"definition"}],"tags":["receipt","infrastructure","OTOM","proof-gate","promotion"],"layer":"0-Core-Formalism","dependencies":["ReceiptCore.lean","OTOM"],"summary":"Minimal receipt infrastructure: workspaces may execute and benchmark but cannot self-promote to reviewed without explicit proof receipt. Defines the promotion pipeline: executable → benchmark → adversarial → candidate → proof gate → reviewed."}
{"file":"6-Documentation/docs/specs/RESEARCH_STACK_NUVMAP_ADDRESS_SPACE.md","title":"Research Stack Address Space: Mountain on Mountains (MS3C-RG)","concepts":[{"name":"NUVMAP","description":"Hierarchical meta-topological address space: (u,v,m) on 14-axis hyperbolic manifold","type":"architecture"},{"name":"Genome18","description":"Bit-exact 18-bit witness address from 6×3-bit bins","type":"definition"},{"name":"Matroska Shell","description":"Recursive shell depth S_k representing conceptual distance from Core Formalism","type":"definition"},{"name":"Crystalline Core S_0","description":"OTOM at origin: m=1.0, maximum activation, zero-drift reference","type":"definition"}],"tags":["NUVMAP","address-space","MS3C","hierarchical","genome18"],"layer":"4-Infrastructure","dependencies":["MS3C-RG","ENE"],"summary":"Mountain-on-mountains hierarchical address space. Each project mapped to NUVMAP (u,v,m) on 14-axis manifold with Genome18 bit-exact addresses. OTOM at S_0 (origin), infrastructure at S_2, external/forked at S_4, archive at S_{-1}."}
{"file":"6-Documentation/docs/specs/DP_RRC_RECEIPT_ENCODING_SPEC.md","title":"DP-RRC: Depth-Prefix Receipt Encoding for the Rainbow Raccoon Compiler","concepts":[{"name":"BraidReceipt","description":"6-dimension receipt: crossing matrix C, Sidon slack σ, step count k, residuals ε_seq, time t, scar absence ∅","type":"definition"},{"name":"BraidBracket","description":"B(κ,μ) = {lower, upper, gap, kappa, phi, admissible} from PhaseVec","type":"definition"},{"name":"Sidon labels","description":"Powers of 2: {1,2,4,8,16,32,64,128} for 8 strands — all pairwise sums unique","type":"definition"},{"name":"Depth-prefix encoding","description":"Dot-prefixed depth markers as alternative to parentheses for tree receipt data","type":"algorithm"},{"name":"eigensolid convergence","description":"detected when crossStep(s) = s; step count k encodes contraction strength","type":"gate"}],"tags":["RRC","receipt","encoding","depth-prefix","Sidon","eigensolid"],"layer":"0-Core-Formalism","dependencies":["BraidEigensolid.lean","RRC.Emit","AVMIsa.Emit"],"summary":"Depth-prefix receipt encoding for RRC compressor. 6 receipt dimensions (C,σ,k,ε_seq,t,∅_scars) ARE the compressed state. BraidBracket computed from PhaseVec octagonal norm. Sidon labels give collision-free crossing addresses."}
{"file":"6-Documentation/docs/specs/AVM_CANONICAL_SPEC.md","title":"Canonical Specification for the Adaptive Virtual Machine (AVM)","concepts":[{"name":"AVM Core","description":"Lean-defined ISA: finite opcodes, finite value types, deterministic step/run semantics","type":"architecture"},{"name":"Adapter shims","description":"Python/Rust/C backends that strip/serialize/reinterpret into AVM programs","type":"architecture"},{"name":"Closed-world opcodes","description":"Finite and enumerable instruction set defined as Lean inductive","type":"definition"}],"tags":["AVM","ISA","Lean","virtual-machine","adapter"],"layer":"0-Core-Formalism","dependencies":["AVMIsa","Lean"],"summary":"Canonical AVM design: Lean-only ISA with finite opcodes and value types. All non-Lean languages are adapter shims that strip/serialize into AVM programs. They may not introduce new ISA meaning or add ad-hoc branching policy."}
{"file":"6-Documentation/docs/specs/GCCL_ENCODING_CONTRACT.md","title":"GCCL Encoding Contract","concepts":[{"name":"GCCL","description":"Geometric, Cognitive, and Compression Law — decides if transformation is lawful enough to promote","type":"gate"},{"name":"Seven law surfaces","description":"Geometric, Cognitive, Compression, Residual, Cost, Scale, Receipt","type":"definition"},{"name":"Transition encoding","description":"GCCL encodes transitions (source→transform→target→receipt decision), not just objects","type":"definition"}],"tags":["GCCL","encoding","law","promotion","transition","surfaces"],"layer":"0-Core-Formalism","dependencies":["GCCL.lean"],"summary":"GCCL = Geometric, Cognitive, and Compression Law. Encodes transitions, not objects. Every encoded object declares 7 law surfaces: Geometric, Cognitive, Compression, Residual, Cost, Scale, Receipt."}
{"file":"6-Documentation/docs/specs/DP_TEXEL_8K_ENCODING_SPEC.md","title":"DisplayPort × NVENC Texel Stream Specification","concepts":[{"name":"8K60 texel transport","description":"7680×4320@60Hz = 33.18M pixels/frame, ~100 MB/s raw texel bandwidth","type":"spec"},{"name":"NVENC 8-session encoding","description":"8 concurrent H.265 sessions: φ-phase, amplitude, velocity tensor, witness, VBLANK, HBLANK, DDC, CEC","type":"architecture"},{"name":"Texel lane mapping","description":"Lane 0: φ-phase, Lane 1: A_n amplitude, Lane 2: v_ij tensor, Lane 3: witness","type":"definition"}],"tags":["DisplayPort","NVENC","texel","8K","H.265","GPU"],"layer":"4-Infrastructure","dependencies":["NVENC","DP"],"summary":"8K60 texel transport via DisplayPort + NVENC hardware encoding. 8 concurrent sessions carrying φ-phase, amplitude, velocity tensor, witness, VBLANK TVI, HBLANK mistake vectors, DDC attestation, CEC clock."}
{"file":"6-Documentation/docs/specs/ENE_MEMORY_ATLAS_SPEC.md","title":"ENE Memory Atlas Spec","concepts":[{"name":"MemoryAtom","description":"One record with voxel_key, manifold_5d, concept_vector, fractal hash triplet, Q0_16 scalar","type":"definition"},{"name":"Fractal hash triplet","description":"direct_hash + subtree_fold + parent_fold for integrity verification","type":"primitive"},{"name":"14-axis concept vector","description":"Signed Q0_16 axes weighted by φ^{-i}","type":"definition"},{"name":"ENE Memory Atlas","description":"Unified address-first, signed, MMR-attested, BFT-replicated memory surface","type":"architecture"}],"tags":["ENE","memory","atlas","concept-vector","fractal-hash","Q0_16"],"layer":"4-Infrastructure","dependencies":["ENE","Q0_16","MMR"],"summary":"Unified addressable memory surface for all LLMs. MemoryAtom carries voxel_key, 5D manifold point, 14-axis concept vector, fractal hash triplet, signed Q0_16 scalar, and three projection lanes. MMR-attested, BFT-replicated."}
{"file":"6-Documentation/docs/specs/HDMI_Field_Encoding_Spec.md","title":"HDMI Field Encoding Specification","concepts":[{"name":"TMDS lane hijacking","description":"3 TMDS lanes repurposed for soliton φ-parameter, amplitude, velocity tensor","type":"architecture"},{"name":"Control period abuse","description":"Data Island Periods carry soliton topology metadata instead of audio/InfoFrames","type":"architecture"},{"name":"DDC witness exchange","description":"I2C channel repurposed for soliton witness exchange","type":"architecture"},{"name":"White hole decoder","description":"Receiver reconstructs soliton field; display is decoder, not framebuffer","type":"definition"}],"tags":["HDMI","TMDS","soliton","physical-layer","abuse","encoding"],"layer":"4-Infrastructure","dependencies":["HDMI","TMDS"],"summary":"Physical layer hijacking of HDMI: TMDS lanes carry soliton field parameters, Data Islands carry topology metadata, DDC channel carries witness exchange. Display becomes a white hole decoder."}
{"file":"6-Documentation/docs/specs/PROJECTABLE_GEOMETRY_COMPRESSOR_SPEC.md","title":"Projectable Geometry Compressor Spec","concepts":[{"name":"Projectable geometry compression","description":"project → preserve → improve: map to lower-dim control basis, track residuals, amortize over corpus","type":"architecture"},{"name":"Residual sidecar","description":"Every displaced coordinate tracked in a residual lane","type":"definition"},{"name":"Compression inequality","description":"K(model) + K(residuals|model) < K(raw objects) required for promotion","type":"gate"}],"tags":["compression","geometry","projection","residual","corpus"],"layer":"0-Core-Formalism","dependencies":["StandardModel","Lagrangian"],"summary":"Compressor design turning large objects into shared projectable geometry + compact carrier symbols + bounded residual sidecars + exact rehydration receipts. No compression claim promoted until benchmarked against baselines."}
{"file":"6-Documentation/docs/specs/PHI_S3C_PIST_BRIDGE_SPEC.md","title":"Phi-S3C-PIST Bridge Spec","concepts":[{"name":"Phi-S3C-PIST bridge","description":"Connects Phi center to S3C shell coordinates and PIST witness transport","type":"bridge"},{"name":"Role boundaries","description":"Phi_field=cost comparison, S3C=shell atlas, PIST=witness transport, phinary=indexing, GraphML=lineage","type":"definition"},{"name":"Bridge record","description":"JSON with phi_role, s3c_role, pist_role, phinary_id, lineage_role per node","type":"definition"}],"tags":["Phi","S3C","PIST","bridge","phinary","GraphML"],"layer":"0-Core-Formalism","dependencies":["Phi_field","S3C","PIST","GraphML"],"summary":"March orders connecting Phi center to S3C coordinates and PIST transport. Each node gets a bridge record with phi_role, s3c_role, pist_role, phinary_id, and lineage_role."}
{"file":"6-Documentation/docs/specs/MORPHIC_NEURAL_NETWORK_ROUTING_SPEC.md","title":"Morphic Neural Network Routing Layer","concepts":[{"name":"MNN routing layer","description":"Adaptive path formation between LUT admission and GCL codons","type":"architecture"},{"name":"Goal-aware routing","description":"MNN interprets packet goal (health, attest, compress, recover, route) and selects path","type":"algorithm"},{"name":"Morphic topology","description":"Routing tables reshape based on current manifold state","type":"architecture"}],"tags":["MNN","routing","adaptive","morphic","GCL","LUT"],"layer":"4-Infrastructure","dependencies":["LUT","GCL","Omnitoken"],"summary":"Low-level adaptive routing between LUT admission and GCL codons. Not deep learning — a morphic router reshaping paths based on packet goal, node state, carrier conditions, recovery pressure, and cost."}
{"file":"6-Documentation/docs/specs/LLM_REFINEMENT_PROTOCOL.md","title":"LLM Refinement Protocol","concepts":[{"name":"Table expansion","description":"Infer hidden dimensions of concept with axis, proxy, uncertainty, failure mode columns","type":"recipe"},{"name":"Lens sweep","description":"Run concept through hostile scientist, patent examiner, systems engineer, formal-methods, safety, implementation lenses","type":"recipe"},{"name":"Glossary lock","description":"Extract polysemic terms and give each a local project definition","type":"recipe"},{"name":"Primitive compression","description":"Collapse concept into 4 keeper primitives: field, shear, packet, spectral","type":"recipe"},{"name":"Residual audit","description":"Mark each subclaim as metaphor, hypothesis, engineering delta, evidence-backed, or rejected","type":"recipe"}],"tags":["LLM","refinement","protocol","methodology","audit"],"layer":"6-Documentation","dependencies":[],"summary":"Protocol for converting rough research ideas into stable, auditable refinement loops. 7 steps: table expansion, lens sweep, glossary lock, primitive compression, residual audit, test hook, warden pass."}
{"file":"6-Documentation/docs/specs/ANGRYSPHINX_DONATED_CYCLE_GATE_SPEC.md","title":"AngrySphinx Donated-Cycle Gate Specification","concepts":[{"name":"Donated-Cycle Gate","description":"Web proof-of-defense where client compute contributes to defender's gate calibration","type":"architecture"},{"name":"Proof-of-defense receipt","description":"Every accepted proof leaves an auditable defensive receipt","type":"receipt"},{"name":"Difficulty scaling","description":"Challenge difficulty increases based on observed attack pressure","type":"algorithm"},{"name":"Hashcash-compatible fallback","description":"Default challenge remains hashcash-compatible; useful work optional and bounded","type":"protocol"}],"tags":["AngrySphinx","proof-of-work","web-security","anti-bot","proof-of-defense"],"layer":"4-Infrastructure","dependencies":["AngrySphinx","Anubis"],"summary":"Web-facing proof-of-defense layer: suspicious clients spend compute that improves gate calibration instead of being discarded. Compatible with Anubis-style anti-bot proxy. Attacker either leaves or donates defensive cycles."}
{"file":"6-Documentation/docs/specs/BERNOULLI_OCCUPANCY_RECEIPT_MATH.md","title":"Bernoulli Occupancy Receipt Math","concepts":[{"name":"Bernoulli occupancy","description":"Probabilistic model for receipt slot occupancy","type":"algorithm"}],"tags":["Bernoulli","receipt","occupancy","math"],"layer":"0-Core-Formalism","dependencies":["Q16_16"],"summary":"Mathematical framework for Bernoulli occupancy in receipt systems."}
{"file":"6-Documentation/docs/specs/BurgersHarmonicPeelingVerification.md","title":"Burgers Harmonic Peeling Verification","concepts":[{"name":"Harmonic peeling","description":"Verification of Burgers PDE harmonic decomposition","type":"theorem"}],"tags":["Burgers","harmonic","peeling","verification"],"layer":"0-Core-Formalism","dependencies":["BurgersPDE.lean"],"summary":"Verification of harmonic peeling for Burgers PDE decomposition."}
{"file":"6-Documentation/docs/specs/CBF_Hardware_Spec.md","title":"CBF Hardware Spec","concepts":[{"name":"CBF","description":"Custom hardware block specification","type":"spec"}],"tags":["CBF","hardware","spec"],"layer":"4-Infrastructure","dependencies":[],"summary":"Custom hardware block specification."}
{"file":"6-Documentation/docs/specs/CONTINUED_FRACTION_COMPRESSION_ADAPTATION.md","title":"Continued Fraction Compression Adaptation","concepts":[{"name":"Continued fraction compression","description":"Compression via continued fraction representation","type":"algorithm"}],"tags":["compression","continued-fraction","adaptation"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Adaptation of continued fractions for compression."}
{"file":"6-Documentation/docs/specs/DECODER_FACING_RECONSTRUCTION_CORE.md","title":"Decoder-Facing Reconstruction Core","concepts":[{"name":"Reconstruction core","description":"Decoder-facing core for state reconstruction","type":"architecture"}],"tags":["decoder","reconstruction","core"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Decoder-facing reconstruction core architecture."}
{"file":"6-Documentation/docs/specs/DRIFT_QUARANTINE_YANG_MILLS_SPEC.md","title":"Drift Quarantine Yang-Mills Spec","concepts":[{"name":"Drift quarantine","description":"Isolation of drift-affected Yang-Mills computations","type":"gate"}],"tags":["Yang-Mills","drift","quarantine","physics"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Specification for quarantining drift-affected Yang-Mills computations."}
{"file":"6-Documentation/docs/specs/EMBEDDED_NODE_SURFACE_SPEC.md","title":"Embedded Node Surface Spec","concepts":[{"name":"Embedded node surface","description":"Surface layer for embedded compute nodes","type":"architecture"}],"tags":["embedded","node","surface"],"layer":"4-Infrastructure","dependencies":[],"summary":"Embedded node surface specification."}
{"file":"6-Documentation/docs/specs/ENE_HOTSWAP_PLUGIN_ARCHITECTURE.md","title":"ENE Hotswap Plugin Architecture","concepts":[{"name":"Hotswap plugin","description":"scan → plan → commit → verify plugin lifecycle for ENE","type":"architecture"}],"tags":["ENE","hotswap","plugin"],"layer":"4-Infrastructure","dependencies":["ENE"],"summary":"ENE hotswap plugin architecture with scan-plan-commit-verify lifecycle."}
{"file":"6-Documentation/docs/specs/FORWARD_FOUNDATION_EQUATION_COMPILER.md","title":"Forward Foundation Equation Compiler","concepts":[{"name":"Equation compiler","description":"Forward compilation of foundation equations","type":"tool"}],"tags":["compiler","equation","foundation"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Forward foundation equation compiler specification."}
{"file":"6-Documentation/docs/specs/GCL_FIELD_EQUATIONS_SPEC.md","title":"GCL Field Equations Spec","concepts":[{"name":"GCL field equations","description":"Field equation specifications for Genetic Code Language","type":"spec"}],"tags":["GCL","field","equations"],"layer":"0-Core-Formalism","dependencies":["GCL"],"summary":"Field equation specifications for GCL."}
{"file":"6-Documentation/docs/specs/GCL_TOPOLOGY_REVISION_SPEC.md","title":"GCL Topology Revision Spec","concepts":[{"name":"GCL topology revision","description":"Topology revision rules for GCL evolution","type":"spec"}],"tags":["GCL","topology","revision"],"layer":"0-Core-Formalism","dependencies":["GCL"],"summary":"Topology revision specification for GCL."}
{"file":"6-Documentation/docs/specs/GENSIS_COMPILER_SPEC.md","title":"GENSIS Compiler Spec","concepts":[{"name":"GENSIS","description":"Genesis compiler for structured object transformation","type":"tool"}],"tags":["GENSIS","compiler","genesis"],"layer":"0-Core-Formalism","dependencies":[],"summary":"GENSIS compiler specification for structured object transformation."}
{"file":"6-Documentation/docs/specs/GEOMETRY_EMERGENCY_BOOT_WITNESS_2026-04-08.md","title":"Geometry Emergency Boot Witness","concepts":[{"name":"Emergency boot witness","description":"Boot-time geometric witness for emergency recovery","type":"receipt"}],"tags":["geometry","boot","witness","emergency"],"layer":"4-Infrastructure","dependencies":[],"summary":"Emergency boot witness for geometric state recovery."}
{"file":"6-Documentation/docs/specs/HUMAN_SURFACE_JSONL_SPEC.md","title":"Human Surface JSONL Spec","concepts":[{"name":"Human surface JSONL","description":"JSONL format for human-readable surface data","type":"spec"}],"tags":["JSONL","human-surface","format"],"layer":"6-Documentation","dependencies":[],"summary":"JSONL specification for human-readable surface data."}
{"file":"6-Documentation/docs/specs/HYDROGENIC_PHI_TORSION_BRAID.md","title":"Hydrogenic Phi-Torsion Braid","concepts":[{"name":"Hydrogenic phi-torsion","description":"Braid algebra using golden ratio torsion","type":"definition"}],"tags":["hydrogenic","phi","torsion","braid"],"layer":"0-Core-Formalism","dependencies":["Phi","Braid"],"summary":"Hydrogenic phi-torsion braid algebra."}
{"file":"6-Documentation/docs/specs/INFORMATION_MANIFOLD_TAXONOMY.md","title":"Information Manifold Taxonomy","concepts":[{"name":"Information manifold taxonomy","description":"Classification of information manifolds by structural properties","type":"definition"}],"tags":["information","manifold","taxonomy"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Taxonomy for classifying information manifolds."}
{"file":"6-Documentation/docs/specs/K3_COMPLIANT_NODE_STRUCTURE.md","title":"K3 Compliant Node Structure","concepts":[{"name":"K3 compliance","description":"Node structure compliant with K3 formalization standard","type":"definition"}],"tags":["K3","compliance","node","structure"],"layer":"0-Core-Formalism","dependencies":[],"summary":"K3-compliant node structure definition."}
{"file":"6-Documentation/docs/specs/LANGUAGE_SET_MANIFOLD_GRAPH_TYPING.md","title":"Language Set Manifold Graph Typing","concepts":[{"name":"Manifold graph typing","description":"Type system for language set manifold graphs","type":"definition"}],"tags":["language","manifold","graph","typing"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Type system for language set manifold graphs."}
{"file":"6-Documentation/docs/specs/LAW_GATED_RECONSTRUCTION_CORE_SHIFT.md","title":"Law-Gated Reconstruction Core Shift","concepts":[{"name":"Law-gated reconstruction","description":"Reconstruction core with law-based admission gates","type":"architecture"}],"tags":["law","reconstruction","gate","core"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Reconstruction core with law-based admission gates."}
{"file":"6-Documentation/docs/specs/MS3C_NESTED_REDUCTION_GEAR_SPEC.md","title":"MS3C Nested Reduction Gear Spec","concepts":[{"name":"MS3C-RG","description":"Matroska S3C Nested Reduction Gear for hierarchical encoding","type":"architecture"}],"tags":["MS3C","reduction-gear","hierarchical","encoding"],"layer":"4-Infrastructure","dependencies":["S3C"],"summary":"Matroska S3C Nested Reduction Gear specification for hierarchical address encoding."}
{"file":"6-Documentation/docs/specs/NII_CORE_DRIVER_COMPLETION_SUMMARY.md","title":"NII Core Driver Completion Summary","concepts":[{"name":"NII core driver","description":"Network Interface Integration core driver completion report","type":"receipt"}],"tags":["NII","driver","completion","network"],"layer":"4-Infrastructure","dependencies":[],"summary":"NII core driver completion summary."}
{"file":"6-Documentation/docs/specs/NII_CORE_DRIVER_IMPLEMENTATION_PLAN.md","title":"NII Core Driver Implementation Plan","concepts":[{"name":"NII driver plan","description":"Implementation plan for NII core driver","type":"recipe"}],"tags":["NII","driver","plan","implementation"],"layer":"4-Infrastructure","dependencies":[],"summary":"Implementation plan for NII core driver."}
{"file":"6-Documentation/docs/specs/OMINDIRECTION_LOGOGRAM_DESIGN_AND_COMPILER.md","title":"Omindirection Logogram Design and Compiler","concepts":[{"name":"Omindirection logograms","description":"Direction/chirality/phase-bearing symbolic atoms","type":"definition"},{"name":"Logogram compiler","description":"Compiler for logogram design and encoding","type":"tool"}],"tags":["Omindirection","logogram","compiler","symbology"],"layer":"0-Core-Formalism","dependencies":["Omindirection"],"summary":"Design and compiler for Omindirection logograms with direction, chirality, phase, and placement."}
{"file":"6-Documentation/docs/specs/OMNITOKEN_GCL_REDESIGN.md","title":"Omnitoken GCL Redesign","concepts":[{"name":"Omnitoken GCL","description":"Redesigned Genetic Code Language with Omnitoken addressing","type":"architecture"}],"tags":["Omnitoken","GCL","redesign"],"layer":"0-Core-Formalism","dependencies":["Omnitoken","GCL"],"summary":"Redesign of GCL with Omnitoken addressing."}
{"file":"6-Documentation/docs/specs/Oracle_Interrogation_IDPC_v0_1.md","title":"Oracle Interrogation IDPC v0.1","concepts":[{"name":"Oracle interrogation","description":"IDPC protocol for oracle-based problem classification","type":"protocol"}],"tags":["oracle","IDPC","interrogation","protocol"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Oracle interrogation protocol for IDPC problem classification."}
{"file":"6-Documentation/docs/specs/Quaternion_Sidon_Standing_Field_v0_1.md","title":"Quaternion Sidon Standing Field v0.1","concepts":[{"name":"Quaternion Sidon field","description":"Standing field using quaternion algebra with Sidon address structure","type":"definition"}],"tags":["quaternion","Sidon","standing-field"],"layer":"0-Core-Formalism","dependencies":["Quaternion","Sidon"],"summary":"Quaternion Sidon standing field combining quaternion algebra with Sidon pair-addressing."}
{"file":"6-Documentation/docs/specs/RECONSTRUCTION_CORE_MATH_REVIEW_2026_05_09.md","title":"Reconstruction Core Math Review","concepts":[{"name":"Math review","description":"Mathematical review of reconstruction core correctness","type":"receipt"}],"tags":["reconstruction","review","math"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Mathematical review of reconstruction core."}
{"file":"6-Documentation/docs/plans/SilverSight_completion_pipeline.md","title":"SilverSight Completion Pipeline — Microstep Edition","concepts":[{"name":"SilverSight pipeline","description":"Per-file, per-theorem, per-commit microsteps for SilverSight completion","type":"recipe"},{"name":"Claim-state manifest","description":"BEAUTIFUL_PROVISIONAL → CALIBRATED_ENGINEERING_DELTA → REVIEWED → VERIFIED tracking","type":"gate"},{"name":"YaFF-inspired core","description":"Schema/Layout/WireFormat/View/CanalLayout Lean modules","type":"architecture"},{"name":"Library method","description":"Core/ defines contracts; libraries implement them; libraries never import libraries","type":"pattern"}],"tags":["SilverSight","pipeline","microsteps","Lean","plan"],"layer":"0-Core-Formalism","dependencies":["SilverSight","FixedPoint","Bind"],"summary":"Detailed microstep pipeline for SilverSight completion. Phase 0/1 boundary reached: YaFF core compiles (2987 jobs), Q16_16 roundtrip proven. Remaining: product-type encoders, DynamicCanal physics, theorem triage, extraction targets."}
{"file":"6-Documentation/docs/plans/SOVEREIGN_PROCEED_PLAN_V1.md","title":"Sovereign Proceed Plan: 48-Hour Execution","concepts":[{"name":"Burgers theorem hardening","description":"Replace sorry markers with proofs using norm_num/field_simp/linarith","type":"recipe"},{"name":"UART packet structure","description":"FPGA loopback test: 0xAA start + 18-bit state + XOR checksum","type":"spec"},{"name":"Hardware loopback","description":"Tang Nano 9K UART echo test for state + computed kernel value","type":"recipe"}],"tags":["plan","Burgers","FPGA","UART","hardware-loopback"],"layer":"6-Documentation","dependencies":["BurgersPDE.lean","Tang Nano 9K"],"summary":"48-hour execution plan: harden Burgers theorems (replace sorry with proofs), design UART packet structure for FPGA loopback, and test Tang Nano 9K echo."}
{"file":"6-Documentation/docs/semantics/CORE_MANIFEST.md","title":"Core Manifest — Honest Status of the Semantics Library","concepts":[{"name":"Module status levels","description":"STABLE (no sorry, no Float), BETA (functional with gaps), SHIM (boundary code), EXPLORATORY","type":"definition"},{"name":"FixedPoint status","description":"STABLE: Q16_16.one, Q16_16.zero witnesses, foundation for all fixed-point math","type":"receipt"},{"name":"Bind status","description":"STABLE: bindPreservesInvariant witness, core bind primitive","type":"receipt"},{"name":"Sorry inventory","description":"BraidCross 2 sorry, Constitution 1 sorry, Tests 18 sorry (test debt)","type":"receipt"}],"tags":["manifest","status","Lean","sorry","module-inventory"],"layer":"0-Core-Formalism","dependencies":["FixedPoint","Bind","Canon","Graph"],"summary":"Honest status document classifying modules as STABLE/BETA/SHIM/EXPLORATORY. FixedPoint and Bind are STABLE. BraidCross has 2 sorry (associativity/commutativity), Constitution has 1 sorry (totality)."}
{"file":"6-Documentation/docs/semantics/LEAN_PORT_ORCHESTRATION_MAP.md","title":"Lean Port Orchestration Map","concepts":[{"name":"Single Orchestration Layer","description":"0-Core-Formalism/lean/Semantics/ is the only place where invariants are checked, costs computed, transitions validated","type":"architecture"},{"name":"Domain-by-domain port map","description":"Systematic plan to port every repo domain to Lean 4","type":"recipe"},{"name":"Three categories","description":"Every file: Lean Core (source of truth), Thin Shim (I/O only), or Deleted","type":"gate"}],"tags":["Lean","orchestration","port","migration","SOL"],"layer":"0-Core-Formalism","dependencies":["Semantics","lake build"],"summary":"Forced systematic port of every domain to Lean 4. Single Orchestration Layer = Semantics/. Categories: Lean Core (source of truth), Thin Shim (I/O), Deleted. One module at a time; lake build must never break."}
{"file":"6-Documentation/docs/semantics/LEAN_NAMING_CONVENTIONS.md","title":"Strict Naming Conventions for the Lean Port","concepts":[{"name":"PascalCase files","description":"All Lean files: PascalCase.lean, one module per file","type":"definition"},{"name":"camelCase functions","description":"All functions camelCase, all types PascalCase","type":"definition"},{"name":"Semantics root namespace","description":"Every file opens with namespace Semantics or Semantics.<Domain>","type":"definition"},{"name":"Banned patterns","description":"No snake_case, no getFoo/setFoo/checkFoo, no _v2/_final, no test_ prefixes","type":"definition"}],"tags":["naming","conventions","Lean","style-guide"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Mandatory naming conventions: PascalCase files, PascalCase types, camelCase functions, Semantics root namespace. Banned: snake_case, getFoo/setFoo, _v2/_final, test_ prefixes."}
{"file":"6-Documentation/docs/semantics/CANONICAL_FORMULA_INDEX.md","title":"Canonical Formula Index: Sovereign Informatic Manifold","concepts":[{"name":"Cognitive Load Equation","description":"L_total = L_intrinsic + L_extraneous + L_germane + L_routing + L_memory","type":"definition"},{"name":"Infohazard Containment Protocol","description":"Detection levels (Quiescent/Peripheral/Investigative/Adversarial) with repulsion modes","type":"protocol"},{"name":"AngrySphinx Difficulty Scaling","description":"H_{t+1} = H_t + max(0, δ·(L_E - 10.0))","type":"algorithm"},{"name":"Metric-Coupled Convergence","description":"η = L_germane/ΣL_total + ΔEnergy_manifold","type":"definition"}],"tags":["formulas","cognitive-load","ICP","AngrySphinx","canonical"],"layer":"0-Core-Formalism","dependencies":["Q16_16"],"summary":"Canonical mathematical ground truth: Cognitive Load Equation, Infohazard Containment Protocol (4 detection levels), AngrySphinx difficulty scaling, SSMS cycle balancing, and Metric-Coupled Convergence."}
{"file":"6-Documentation/docs/semantics/HUTTER_PRIZE_STRATEGY.md","title":"Hutter Prize Submission Strategy for PIST Extended Encoding","concepts":[{"name":"enwik9","description":"First 10⁹ bytes of enwiki-20060303-pages-articles.xml (fixed corpus)","type":"definition"},{"name":"Hutter Prize formula","description":"Award = 500,000€ × (1 − S/L); S = S1(compressor) + S2(archive)","type":"definition"},{"name":"Current record","description":"fx2-cmix: 110,793,128 bytes (~105.6 MiB), 11.08% compression ratio","type":"receipt"},{"name":"PIST Extended Encoding","description":"Stack's approach to Hutter Prize using PIST + braid eigensolid","type":"architecture"}],"tags":["Hutter-Prize","enwik9","compression","PIST","competition"],"layer":"6-Documentation","dependencies":["PIST","BraidEigensolid"],"summary":"Hutter Prize strategy: enwik9 = 1GB fixed corpus. Current record 105.6 MiB by fx2-cmix. Prize target S < 109.6 MB (1% improvement = €5,000). Stack uses PIST Extended Encoding with braid eigensolid compressor."}
{"file":"6-Documentation/docs/semantics/ene_schema_specification.md","title":"ENE Schema Specification v1.0.0","concepts":[{"name":"Type hierarchy","description":"BaseArchiveRecord → EnhancedArchiveRecord → AttestedArchiveRecord","type":"definition"},{"name":"BaseArchiveRecord","description":"Lossless preservation: archive_id, source_type, raw_content, content_hash","type":"definition"},{"name":"EnhancedArchiveRecord","description":"Semantic enrichment layer with concept anchors and relations","type":"definition"},{"name":"AttestedArchiveRecord","description":"Provenance verification layer with MMR receipts","type":"definition"},{"name":"ArchiveID derivation","description":"Content-addressed ID from source_prefix + content_truncated","type":"algorithm"}],"tags":["ENE","schema","archive","type-hierarchy","specification"],"layer":"4-Infrastructure","dependencies":["ENE"],"summary":"Formal ENE schema: BaseArchiveRecord (lossless) → EnhancedArchiveRecord (semantic) → AttestedArchiveRecord (provenance). Content-addressed ArchiveIDs, SHA-256 content hashes, extraction versioning."}
{"file":"6-Documentation/docs/speculative-materials/PyrochloreSidonBridge.md","title":"Pyrochlore–Sidon Bridge: Experimental Verification","concepts":[{"name":"Pyrochlore-Sidon bridge","description":"15% entropy recovery in KMMC and 90% spectral weight in NaCaNi₂F₇ are the same Sidon packing bound","type":"theorem"},{"name":"Sidon sumset on tetrahedron","description":"Labels {1,2,4,8} cannot close more than 10-15% of 6 edges simultaneously","type":"theorem"},{"name":"KMMC verification","description":"Classical Heisenberg 4-spin tetrahedron: 15% closure at T_c=258mK matches experiment","type":"receipt"}],"tags":["pyrochlore","Sidon","experimental","condensed-matter","verification"],"layer":"0-Core-Formalism","dependencies":["Sidon","tetrahedron"],"summary":"Experimental verification: 15% entropy recovery in KMMC (S=5/2) and 90% spectral weight in NaCaNi₂F₇ (S=1) are the same Sidon packing bound on tetrahedron with labels {1,2,4,8}."}
{"file":"6-Documentation/docs/speculative-materials/RavenRRCBridge.md","title":"Raven's Progressive Matrices → Rainbow Raccoon Compiler","concepts":[{"name":"RPM-RRC isomorphism","description":"Raven's 3×3 grid constraint completion = Sidon sumset closure","type":"bridge"},{"name":"RPM rule types as Sidon","description":"Addition=sum, Subtraction=difference, Rotation=cyclic perm, Shading=AND mask, Size=progression","type":"bridge"},{"name":"9-cell constraint graph","description":"3×3 grid with Sidon addresses {1,2,4,8,16,32,64,128,256}","type":"definition"}],"tags":["Raven","RRC","Sidon","isomorphism","constraint-completion"],"layer":"0-Core-Formalism","dependencies":["RRC","Sidon"],"summary":"Formal isomorphism: Raven's Progressive Matrices = Sidon sumset closure. 3×3 grid with 9 Sidon addresses. Missing cell must satisfy all constraint rules. RPM rule types map to Sidon operations."}
{"file":"6-Documentation/docs/speculative-materials/MULTI_PAPER_PUBLICATION_STRATEGY.md","title":"Multi-Paper Publication Strategy: The Research Stack Framework","concepts":[{"name":"Paper architecture","description":"4-6 papers across 4 tiers: Foundation → Information Theory → Biological Application → Synthesis","type":"recipe"},{"name":"Tier 1: Foundation papers","description":"Hydrogen Base Layer, Constraint-Induced Compression","type":"recipe"},{"name":"Tier 2: Information Theory","description":"Compression theory papers for Entropy/Information journals","type":"recipe"},{"name":"18-36 month timeline","description":"Parallel development across tiers","type":"recipe"}],"tags":["publication","strategy","papers","academic","planning"],"layer":"6-Documentation","dependencies":[],"summary":"Publication strategy: 4-6 papers in 18-36 months. Tier 1: foundation (hydrogen, compression). Tier 2: information theory. Tier 3: biological application. Tier 4: synthesis. Venues include Phys Rev E, Entropy, Nature."}
{"file":"6-Documentation/famm/SIDON_FAMM_MAP.md","title":"Sidon FAMM Map","concepts":[{"name":"Sidon gate","description":"G_Sidon(A)=1 ⟺ all pairwise sums a+b are unique","type":"gate"},{"name":"Candidate-addition gate","description":"New element a* is admissible iff a*+a_i distinct from all existing sums","type":"gate"},{"name":"Collision scar","description":"Failed candidate produces a FAMM scar record","type":"receipt"},{"name":"Full Sidon thread","description":"Classical Sidon → pair-sum gate → candidate receipt → collision scar → physics packet → quaternion anti-alias → two-layer lattice → Theodorus shell → Semantic Mass → NUVMAP Delta-DAG → BJD cleanup → exact verifier","type":"pipeline"}],"tags":["Sidon","FAMM","gate","collision","pipeline"],"layer":"0-Core-Formalism","dependencies":["Sidon","FAMM","BraidStorm"],"summary":"Operational Sidon map: classical Sidon set → pair-sum gate → candidate-addition receipt → collision scar → physics packet → quaternion anti-alias → two-layer lattice → Semantic Mass → NUVMAP → BJD cleanup → exact verifier."}
{"file":"6-Documentation/famm/BRAIDSTORM_SIDON_CROSSING_ANTIALIAS_GATE.md","title":"BraidStorm Sidon Crossing Anti-Alias Gate","concepts":[{"name":"Sidon crossing addresses","description":"Assign each BraidStorm strand a Sidon label so every crossing {i,j} has unique address a_i+a_j","type":"gate"},{"name":"Collision-free crossing","description":"Solves pair-address aliasing for BraidStorm receipts, scars, delta edges","type":"primitive"},{"name":"8-strand canonical set","description":"Powers of 2: {1,2,4,8,16,32,64,128} for 8 strands","type":"definition"}],"tags":["BraidStorm","Sidon","crossing","anti-alias","addressing"],"layer":"0-Core-Formalism","dependencies":["BraidStorm","Sidon"],"summary":"Uses Sidon pair-sum uniqueness for collision-free BraidStorm crossing addresses. Each strand gets a Sidon label; every crossing {i,j} has unique address a_i+a_j. Solves aliasing for receipts, scars, delta edges, and NUVMAP handoffs."}
{"file":"6-Documentation/famm/ANTI_FAMM_SHADOW_ADVERSARY.md","title":"Anti-FAMM Shadow Adversary","concepts":[{"name":"Anti-FAMM","description":"Adversarial dual of FAMM: finds where FAMM failed to see scars or over-scarred valid routes","type":"gate"},{"name":"Nullspace attack","description":"Searches for perturbation η∈ker DΠ_X that changes dangerous behavior DT_X[η]≠0","type":"algorithm"},{"name":"Shadow objective","description":"A_FAMM(X) = sup_{η∈ker DΠ_X,‖η‖≤1} ‖DT_X[η]‖; above threshold = incomplete witness","type":"definition"},{"name":"False pass / False scar","description":"FAMM says PASS but Anti-FAMM finds hidden residual; or FAMM says SCAR but route was lawful","type":"definition"}],"tags":["Anti-FAMM","adversarial","shadow","nullspace","validation"],"layer":"0-Core-Formalism","dependencies":["FAMM"],"summary":"Adversarial dual testing FAMM blind spots. Searches kernel of witness projection for perturbations that change dangerous behavior. Shadow objective above threshold means witness packet is incomplete."}
{"file":"6-Documentation/famm/BUILDER_JUDGE_WARDEN_GEODESIC_CLEANUP_FILTER.md","title":"Builder-Judge-Warden Geodesic Cleanup Filter","concepts":[{"name":"BJW triadic filter","description":"Builder proposes cleanup, Judge verifies law/receipt, Warden blocks unsafe collapse","type":"architecture"},{"name":"Cleanup loss","description":"L_BJW(E) = αC(E) + βR(E) + γΩ(E) − δI(E) + λP(E)","type":"definition"},{"name":"Geodesic cleanup path","description":"Shortest lawful cleanup preserving invariants and ending in receipt","type":"algorithm"}],"tags":["BJW","Builder","Judge","Warden","cleanup","geodesic","FAMM"],"layer":"0-Core-Formalism","dependencies":["FAMM","TSM"],"summary":"Triadic cleanup layer: Builder proposes moves, Judge verifies invariants/receipts, Warden blocks unsafe collapse. Cleanup loss balances complexity, residual, scar pressure, invariant strength, and promotion cost."}
{"file":"6-Documentation/famm/16D_CHAOS_GAME_FIELD_SHRINKER.md","title":"16D Chaos Game Field Shrinker","concepts":[{"name":"16D chaos game","description":"X_{t+1} = A_{σ_t} + C_{σ_t}(X_t − A_{σ_t}) + ε_t in ℝ¹⁶","type":"algorithm"},{"name":"Anchor selection","description":"Weighted by semantic mass, scar pressure, invariant overlap, route cost, receipt strength","type":"algorithm"},{"name":"Field shrinker","description":"Lifts 2D chaos game attractor into 16D manifold-addressed contraction engine","type":"architecture"}],"tags":["chaos-game","16D","FAMM","contraction","fractal"],"layer":"0-Core-Formalism","dependencies":["FAMM","SemanticMass"],"summary":"Lifts chaos game from 2D visual attractor to 16D FAMM field-shrinking engine. Anchors weighted by semantic mass, scar pressure, invariant overlap, route cost. Visible fractal is only 2D projection of 16D route/address state."}
{"file":"6-Documentation/famm/AHMED_INTEGRAL_SCALAR_WITNESS_GATE.md","title":"Ahmed Integral Scalar Witness Gate","concepts":[{"name":"Ahmed integral gate","description":"Scalar witness verification using the Ahmed integral","type":"gate"}],"tags":["Ahmed","integral","witness","gate"],"layer":"0-Core-Formalism","dependencies":["FAMM"],"summary":"Scalar witness gate using the Ahmed integral."}
{"file":"6-Documentation/famm/AUTONOMOUS_SPEEDRUN_HARNESS_GATE.md","title":"Autonomous Speedrun Harness Gate","concepts":[{"name":"Speedrun harness","description":"Automated harness for speedrun-style validation","type":"gate"}],"tags":["speedrun","harness","automation","validation"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Autonomous speedrun harness for automated validation."}
{"file":"6-Documentation/famm/BIO_ORGANOID_SIGNAL_FIELD_GATE.md","title":"Bio-Organoid Signal Field Gate","concepts":[{"name":"Bio-organoid signal","description":"Signal field gate for bio-organoid computations","type":"gate"}],"tags":["bio-organoid","signal","field","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Bio-organoid signal field gate."}
{"file":"6-Documentation/famm/CHROMATIC_HOMOTOPY_HEIGHT_SPECTRAL_GATE.md","title":"Chromatic Homotopy Height Spectral Gate","concepts":[{"name":"Chromatic homotopy gate","description":"Spectral gate using chromatic homotopy theory","type":"gate"}],"tags":["chromatic","homotopy","spectral","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Chromatic homotopy height spectral gate."}
{"file":"6-Documentation/famm/COMMON_NOISE_MFG_RICCATI_GATE.md","title":"Common Noise MFG Riccati Gate","concepts":[{"name":"MFG Riccati gate","description":"Mean-Field Game gate using Riccati equations with common noise","type":"gate"}],"tags":["MFG","Riccati","mean-field-game","noise","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Common noise mean-field game Riccati gate."}
{"file":"6-Documentation/famm/EMPIRICAL_HESSIAN_RECEIPT_PASS.md","title":"Empirical Hessian Receipt Pass","concepts":[{"name":"Hessian receipt","description":"Empirical receipt pass computing Hessian eigenvalues","type":"receipt"}],"tags":["Hessian","receipt","empirical","eigenvalue"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Empirical Hessian receipt pass."}
{"file":"6-Documentation/famm/FAMM_SEMANTIC_MASS_MATH_FOREST_PLOW.md","title":"FAMM Semantic Mass Math Forest Plow","concepts":[{"name":"Math forest plow","description":"Route clearing through math forest guided by Semantic Mass","type":"algorithm"}],"tags":["FAMM","semantic-mass","math-forest","plow"],"layer":"0-Core-Formalism","dependencies":["FAMM","SemanticMass"],"summary":"Route clearing through math forest guided by Semantic Mass."}
{"file":"6-Documentation/famm/FEYNMAN_PATH_INTEGRAL_SHADOW_WITNESS_NOTE.md","title":"Feynman Path Integral Shadow Witness Note","concepts":[{"name":"Feynman path shadow","description":"Shadow witness using Feynman path integral formalism","type":"definition"}],"tags":["Feynman","path-integral","shadow","witness"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Shadow witness using Feynman path integral formalism."}
{"file":"6-Documentation/famm/GOLDEN_BRAID_CENTERING_GATE.md","title":"Golden Braid Centering Gate","concepts":[{"name":"Golden braid centering","description":"Gate enforcing golden ratio centering in braid crossings","type":"gate"}],"tags":["golden-ratio","braid","centering","gate"],"layer":"0-Core-Formalism","dependencies":["Phi","Braid"],"summary":"Golden braid centering gate."}
{"file":"6-Documentation/famm/LOGOGRAM_CHIRALITY_ROUTE_GATE.md","title":"Logogram Chirality Route Gate","concepts":[{"name":"Chirality route gate","description":"Gate based on logogram chirality for routing decisions","type":"gate"}],"tags":["logogram","chirality","routing","gate"],"layer":"0-Core-Formalism","dependencies":["Omindirection"],"summary":"Logogram chirality route gate."}
{"file":"6-Documentation/famm/MARKOVJUNIOR_16D_PIST_REWRITE_SHIM.md","title":"MarkovJunior 16D PIST Rewrite Shim","concepts":[{"name":"MarkovJunior PIST shim","description":"MarkovJunior rewrite rules applied to 16D PIST state","type":"tool"}],"tags":["MarkovJunior","PIST","rewrite","shim"],"layer":"4-Infrastructure","dependencies":["PIST"],"summary":"MarkovJunior rewrite rules for 16D PIST state."}
{"file":"6-Documentation/famm/MOBIUS_APOLLONIUS_CHORD_PARTITION_GATE.md","title":"Möbius Apollonius Chord Partition Gate","concepts":[{"name":"Möbius Apollonius gate","description":"Chord partition gate using Möbius and Apollonius geometry","type":"gate"}],"tags":["Möbius","Apollonius","chord","partition","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Möbius Apollonius chord partition gate."}
{"file":"6-Documentation/famm/NAVIER_STOKES_MHD_CHIRAL_DRAG_NOTE.md","title":"Navier-Stokes MHD Chiral Drag Note","concepts":[{"name":"MHD chiral drag","description":"Chiral drag effect in MHD Navier-Stokes equations","type":"definition"}],"tags":["Navier-Stokes","MHD","chiral","drag"],"layer":"0-Core-Formalism","dependencies":["NavierStokes"],"summary":"Chiral drag in MHD Navier-Stokes."}
{"file":"6-Documentation/famm/NAVIER_STOKES_SHADOW_CONTROL_GAP_MAP.md","title":"Navier-Stokes Shadow Control Gap Map","concepts":[{"name":"Shadow control gap","description":"Gap map for shadow control in Navier-Stokes solutions","type":"definition"}],"tags":["Navier-Stokes","shadow","control","gap"],"layer":"0-Core-Formalism","dependencies":["NavierStokes"],"summary":"Shadow control gap map for Navier-Stokes."}
{"file":"6-Documentation/famm/NUVMAP_DELTA_DAG_SEARCH_COMPRESSOR.md","title":"NUVMAP Delta-DAG Search Compressor","concepts":[{"name":"Delta-DAG compressor","description":"Search compressor using NUVMAP delta DAG structure","type":"algorithm"}],"tags":["NUVMAP","delta-DAG","compressor","search"],"layer":"0-Core-Formalism","dependencies":["NUVMAP"],"summary":"NUVMAP delta-DAG search compressor."}
{"file":"6-Documentation/famm/NUVMAP_DELTA_DAG_SHARDING_SPEC.md","title":"NUVMAP Delta-DAG Sharding Spec","concepts":[{"name":"Delta-DAG sharding","description":"Sharding specification for NUVMAP delta DAG","type":"spec"}],"tags":["NUVMAP","delta-DAG","sharding"],"layer":"4-Infrastructure","dependencies":["NUVMAP"],"summary":"NUVMAP delta-DAG sharding specification."}
{"file":"6-Documentation/famm/OR_TOOLS_WASM_CONSTRAINT_SOLVER_GATE.md","title":"OR-Tools WASM Constraint Solver Gate","concepts":[{"name":"OR-Tools WASM gate","description":"Constraint solver gate using OR-Tools compiled to WASM","type":"gate"}],"tags":["OR-Tools","WASM","constraint-solver","gate"],"layer":"4-Infrastructure","dependencies":[],"summary":"OR-Tools WASM constraint solver gate."}
{"file":"6-Documentation/famm/PLASMA_CHIRAL_DRAG_WITNESS_GATE.md","title":"Plasma Chiral Drag Witness Gate","concepts":[{"name":"Plasma chiral drag gate","description":"Witness gate for plasma chiral drag effects","type":"gate"}],"tags":["plasma","chiral","drag","witness","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Plasma chiral drag witness gate."}
{"file":"6-Documentation/famm/POSSIBLE_CONSTRAINED_AGENT_APPROACHES.md","title":"Possible Constrained Agent Approaches","concepts":[{"name":"Constrained agent","description":"Approaches for agents operating under resource constraints","type":"recipe"}],"tags":["agent","constrained","approaches"],"layer":"6-Documentation","dependencies":[],"summary":"Possible approaches for constrained agents."}
{"file":"6-Documentation/famm/POSSIBLE_CONSTRAINED_AGENT_APPROACHES_DEEP_DIVE.md","title":"Possible Constrained Agent Approaches Deep Dive","concepts":[{"name":"Constrained agent deep dive","description":"Deep analysis of constrained agent approaches","type":"recipe"}],"tags":["agent","constrained","deep-dive"],"layer":"6-Documentation","dependencies":[],"summary":"Deep dive into constrained agent approaches."}
{"file":"6-Documentation/famm/SEMANTIC_MASS_ROUTE_PLOW_RUNNER.md","title":"Semantic Mass Route Plow Runner","concepts":[{"name":"Route plow runner","description":"Runner executing Semantic Mass route clearing","type":"tool"}],"tags":["semantic-mass","route","plow","runner"],"layer":"0-Core-Formalism","dependencies":["SemanticMass"],"summary":"Semantic Mass route plow runner."}
{"file":"6-Documentation/famm/SEMANTIC_MASS_Z_ACCELERATOR.md","title":"Semantic Mass Z-Accelerator","concepts":[{"name":"Z-accelerator","description":"Acceleration of Semantic Mass computation in Z-domain","type":"algorithm"}],"tags":["semantic-mass","Z-domain","accelerator"],"layer":"0-Core-Formalism","dependencies":["SemanticMass"],"summary":"Semantic Mass Z-accelerator."}
{"file":"6-Documentation/famm/SMALLCODE_CONSTRAINED_AGENT_EXECUTION_GATE.md","title":"SmallCode Constrained Agent Execution Gate","concepts":[{"name":"SmallCode gate","description":"Execution gate for constrained agents with code-size limits","type":"gate"}],"tags":["SmallCode","constrained","execution","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"SmallCode constrained agent execution gate."}
{"file":"6-Documentation/famm/TURBULENCE_MODEL_ATLAS_GATE.md","title":"Turbulence Model Atlas Gate","concepts":[{"name":"Turbulence atlas gate","description":"Gate for turbulence model selection from atlas","type":"gate"}],"tags":["turbulence","atlas","model","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Turbulence model atlas gate."}
{"file":"6-Documentation/famm/UNIVERSAL_SHORTCUT_CENTER_MANIFOLD.md","title":"Universal Shortcut Center Manifold","concepts":[{"name":"Shortcut center manifold","description":"Universal center manifold providing shortcuts in state space","type":"definition"}],"tags":["shortcut","center-manifold","universal"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Universal shortcut center manifold."}
{"file":"docs/transfold_enwiki8_magnetic_domain_generator.md","title":"Transfold Enwiki8 Magnetic Domain Generator","concepts":[{"name":"Transfold Magnetic Domain Generator","description":"Stress-test that converts a byte slice into a magnetic-domain equation receipt using entropy, byte transition rate, repeated 4-grams, and capacity overflow as analogues for field demand, agitation, remanence, and hysteresis heat-loss.","type":"algorithm"},{"name":"Magnetic Domain Equation Surface","description":"Equation L_info_i = phi^D_f * (log(1+2h_i) + MM(t_i;1,0.35) + (1-r_i)^0.6) with overflow gate G_over_i and magnetization M_i = sigmoid(((chi_i H_i) + R_i - 0.5 C_loss_i) * G_over_i).","type":"definition"},{"name":"enwik8","description":"The Hutter Prize 1GB Wikipedia XML corpus used as canonical test vector for hierarchical compression.","type":"primitive"}],"tags":["compression","magnetic-domain","stress-test","enwik8","byte-signal","routing-prior"],"layer":"infrastructure","dependencies":[],"summary":"Stress-test mapping byte-signal statistics into magnetic-domain analogues for routing and compression comparison; not a claim of compression improvement."}
{"file":"docs/transfold_couch_data_magnetic_domain_comparison.md","title":"COUCH Data Magnetic-Domain Comparison","concepts":[{"name":"COUCH Bundle Comparison","description":"Runs the same byte-signal to magnetic-domain transfold against local COUCH JSON data bundle, showing COUCH is more memory-like (higher remanence, lower susceptibility) than enwik8.","type":"recipe"},{"name":"Magnetic Domain Stress Sweep","description":"Sweeps capacity thresholds (2.50 to 5.25) measuring overflow chunks, mean overflow gate, and mean heat loss for corpus comparison.","type":"algorithm"}],"tags":["compression","magnetic-domain","COUCH","comparison","routing"],"layer":"infrastructure","dependencies":["Transfold Magnetic Domain Generator"],"summary":"Compares COUCH data bundle against enwik8 using the magnetic-domain transfold; COUCH shows higher remanence and lower heat loss, suggesting dictionary/state reuse routing."}
{"file":"docs/rrc_logogram_projection_formalism.md","title":"RRC Logogram Projection Formalism","concepts":[{"name":"LogogramReceipt","description":"Lean structure with fields: shape, status, regime, payloadBound, contradictionWitness, tearBoundary, detachedMass, residualLane.","type":"definition"},{"name":"typeAdmissible","description":"Predicate: logogram has declared RRC shape, candidate witness status, and bounded payload.","type":"gate"},{"name":"hasTearRepair","description":"Predicate: torn logogram carries all four quarantine witnesses (contradictionWitness, tearBoundary, detachedMass, residualLane).","type":"gate"},{"name":"mergeAdmissible","description":"Predicate: typeAdmissible AND not a tearing regime — allows merge into ordinary route/tokenbook space.","type":"gate"},{"name":"projectionAdmissible","description":"Predicate: typeAdmissible AND (not torn OR hasTearRepair) — allows entry to projection space including quarantine.","type":"gate"},{"name":"Repaired Tear Projects","description":"Theorem: projectionAdmissible(semanticTearReceipt) = true — proved by native_decide.","type":"theorem"},{"name":"Repaired Tear Does Not Merge","description":"Theorem: mergeAdmissible(semanticTearReceipt) = false — proved by native_decide.","type":"theorem"},{"name":"Merge Implies Projection","description":"Theorem: mergeAdmissible(L) → projectionAdmissible(L).","type":"theorem"},{"name":"Repaired Tears Separate Projection From Merge","description":"Theorem: type-admissible torn logogram with repair evidence is projection-admissible but not merge-admissible.","type":"theorem"},{"name":"Quarantine Projection Lane","description":"Torn regimes route to quarantine_projection; non-torn to normal_projection.","type":"protocol"}],"tags":["RRC","logogram","projection","admission","quarantine","Lean","formal-verification"],"layer":"core-formalism","dependencies":["Rainbow Raccoon Compiler"],"summary":"Lean-checked formalism proving that torn logograms can be projection-admissible after repair while remaining not merge-admissible, establishing type != projection != merge admission."}
{"file":"docs/rrc_logogram_projection_bridge.md","title":"RRC Logogram Projection Bridge","concepts":[{"name":"LogogramProjection Bridge","description":"Python bridge that binds canonical cell hash, bounded glyph payload, substitution receipt, semantic regime, and RRC type witness into a LogogramProjection receipt.","type":"bridge"},{"name":"Projection Equation","description":"P_logogram(source) = (canonical_hash, cell_hash, glyph_payload_16, semantic_regime, substitution_receipt, rrc_type_witness).","type":"definition"},{"name":"Tear Repair Pipeline","description":"Flow: horrible_manifold_tearing → contradiction_witness_hash → tear_boundary_hash → detached_mass_id → semantic_boundary_residual → quarantine_projection → merge_admissible=false.","type":"protocol"},{"name":"RRC Shape LogogramProjection","description":"New lawful RRC shape with field equation: logogram_cell → canonical_hash → glyph_payload → projection_lane, admitted iff cell hash, payload bound, substitution receipt, and regime guard close.","type":"definition"}],"tags":["RRC","logogram","projection","bridge","receipt","Python"],"layer":"infrastructure","dependencies":["RRC Logogram Projection Formalism","Rainbow Raccoon Compiler"],"summary":"Executable bridge that projects logograms into RRC receipts with projection/merge admission gates and tear repair handling."}
{"file":"docs/rrc_equation_classification.md","title":"RRC Equation Projection","concepts":[{"name":"RRC Equation Projection","description":"Rainbow Raccoon Compiler projection pass over 278 local equation surfaces recording nearest lawful shapes, projection axes, and admissibility holds.","type":"algorithm"},{"name":"RRC Shape Distribution","description":"278 equations classified: CadForceProbeReceipt(2), CognitiveLoadField(77), HoldForUnlawfulOrUnderspecifiedShape(125), LogogramProjection(1), ProjectableGeometryTopology(37), SignalShapedRouteCompiler(36).","type":"receipt"},{"name":"Missing Axes","description":"scale_band_declared missing for 249/278 equations; negative_control_strength missing for 39.","type":"invariant"}],"tags":["RRC","equation-classification","admissibility","routing","projection"],"layer":"core-formalism","dependencies":["Rainbow Raccoon Compiler"],"summary":"Projection pass classifying 278 equations into RRC shapes with CANDIDATE/HOLD status; 249 equations missing scale_band_declared axis."}
{"file":"docs/rainbow_raccoon_compiler_integration.md","title":"Rainbow Raccoon Compiler Integration","concepts":[{"name":"Rainbow Raccoon Compiler (RRC)","description":"Manifold-indexed type-checker boundary: object → manifold projection → nearest lawful shape → type witness → field equation → invariant receipt.","type":"architecture"},{"name":"16-Axis Manifold Vector","description":"Projection axes: semantic_entropy, geometric_mass, compression_pressure, topology_torsion, receipt_density, field_energy, hardware_affinity, proof_readiness, residual_risk, shape_closure, history_depth, negative_control_strength, projection_declared, decoder_declared, witness_declared, scale_band_declared.","type":"definition"},{"name":"Lawful Shape Prototypes","description":"Initial set: SignalShapedRouteCompiler, ProjectableGeometryTopology, CognitiveLoadField, CadForceProbeReceipt, LogogramProjection, HoldForUnlawfulOrUnderspecifiedShape.","type":"definition"},{"name":"CANDIDATE Status","description":"Object has enough declared projection, witness, and scale evidence to be admissible for next-stage proving.","type":"gate"},{"name":"HOLD Status","description":"Object is underspecified or has weak receipt axes; not admissible for next stage.","type":"gate"},{"name":"Promotion Rules","description":"CANDIDATE is not a Lean proof; HOLD when projection/witness/decoder/residual/scale is weak; no promotion without replayable invariant receipt.","type":"protocol"}],"tags":["RRC","compiler","manifold","type-checking","integration"],"layer":"core-formalism","dependencies":[],"summary":"Integration shim implementing RRC as a manifold-indexed type-checker with 16-axis projection, 6 lawful shape prototypes, and CANDIDATE/HOLD admission."}
{"file":"docs/optional-science-toolbelt.md","title":"Optional Science Toolbelt","concepts":[{"name":"Optional Science Toolbelt","description":"Optional reference surfaces for math-first work including Biopython, Dedalus, liboqs-python, RDKit, Z3, SageMath, zstandard, PyWavelets — Lean remains source of truth.","type":"tool"},{"name":"probe_science_toolbelt.py","description":"Script to probe which optional domain tools are available; exits successfully even when tools are missing.","type":"tool"},{"name":"Receipt Pattern for Adapters","description":"Pattern: input fixture path → tool name/version → exact command → output hash + summary → link to Lean theorem or claim registry entry.","type":"pattern"}],"tags":["tooling","science","optional","bioinformatics","cryptography","formal-bridge","compression"],"layer":"infrastructure","dependencies":[],"summary":"Optional domain-specific tools (genetics, CFD, crypto, chemistry, formal bridge, algebra, compression) for math-first work; produces receipts not theorems."}
{"file":"docs/math-first-tooling.md","title":"Math-First Tooling","concepts":[{"name":"Math-First Contract","description":"Every mathematical claim must carry machine-checkable evidence — a Lean proof, a DeepSeek review receipt with SHA-256 integrity, or both.","type":"protocol"},{"name":"Claim Status Ladder","description":"States: conjecture → verified-by-ai → formally-proven → published. Movement only forward, each transition accompanied by claims.yaml change.","type":"gate"},{"name":"ollama_deepseek_review_receipt_v1","description":"Receipt schema requiring schema, created_at, model, endpoint, prompt_sha256, answer_sha256, usage, context_files, answer_path.","type":"spec"},{"name":"claims.yaml","description":"Single source of truth for mathematical claim rigor level with fields: id, title, status, lean, review_receipts, sources, notes.","type":"tool"},{"name":"require_math_evidence","description":"Pre-commit hook enforcing that commits touching math-track surfaces must also touch a math-evidence surface (receipt, Lean kernel, or claims.yaml).","type":"gate"},{"name":"MCP Servers for Math","description":"Registry: filesystem, sympy, wolfram-alpha, lean — AI assistants get tool access, not trust.","type":"tool"},{"name":"Receipt Validator","description":"validate_deepseek_receipts.py validates receipt schema compliance with SHA-256 hash pinning.","type":"tool"},{"name":"Claims Registry Validator","description":"validate_claims_registry.py enforces JSON Schema, unique IDs, and repo-relative path existence.","type":"tool"}],"tags":["math-first","claims","receipts","Lean","CI","pre-commit","MCP","verification"],"layer":"infrastructure","dependencies":[],"summary":"Codifies the math-first contract: every claim needs Lean proof or DeepSeek receipt; CI enforces via pre-commit hooks, validators, and MCP tool registry."}
{"file":"docs/compression_signal_shaping_synthesis.md","title":"Compression Signal-Shaping Synthesis","concepts":[{"name":"Signal-Shaped Route Compiler","description":"New pattern: shape the route space before coding, then pay exact residual, witness, decoder, and container bytes after coding.","type":"architecture"},{"name":"Phi Signal Feature Vector","description":"phi_signal(c) = [H(c), tag_density(c), DCT_energy(c), transient(c), autocorr(c), cosine_reuse(c)].","type":"definition"},{"name":"Route Selection Equation","description":"r* = argmin_r LB(r | phi_signal(c), semantic_regime(c), history_state).","type":"definition"},{"name":"Exact Cost Accounting","description":"C_total = bytes(payload) + bytes(sidecar) + bytes(residual) + bytes(decoder) + bytes(witness) + bytes(container).","type":"definition"},{"name":"Topology Regime Guard","description":"Classify as beautiful→fold, ugly→prune, horrible→isolate/hold before tokenbook merges.","type":"gate"},{"name":"Witness-Budgeted Latent Route","description":"Generative models propose routes; exact residual repairs; uncertainty decides hold.","type":"algorithm"},{"name":"Fractional History Route Scheduler","description":"h_t = sum K_alpha(t-tau) * residual_tau with bounded memory for nonstationary regions.","type":"algorithm"},{"name":"Negative Control Pattern","description":"valid_gain iff C(candidate) < C(baseline) AND C(candidate) < C(matched_bad_route).","type":"pattern"},{"name":"Promotion Gate","description":"Promote iff H(decode(r*)) == H(source) AND C_total < incumbent AND failure_rules == none.","type":"gate"}],"tags":["compression","signal-processing","route-compiler","topology","Hutter"],"layer":"core-formalism","dependencies":[],"summary":"Synthesis proposing signal-shaped route compilation experiments with exact cost accounting, topology regime guards, and negative controls; not a Hutter Prize result."}
{"file":"docs/WIKI.md","title":"Research Stack Wiki","concepts":[{"name":"Research Stack Architecture","description":"5-layer capability-adaptive compute fabric: Physical Network → Tailscale Mesh → Compute Surfaces → FrameDispatcher → VCN Pipeline → Ray Scheduler → Application Layer.","type":"architecture"},{"name":"Compute Tiers","description":"Device classification: GPU_CUDA(10), GPU_VAAPI(9), GPU_APU(8), CPU_FFMPEG(7), BATCH(6), ETHERNET(5), FRAMEBUFFER(4), WASM(3), DSP(2), ESP32(2), RELAY(1), OFFLINE(0).","type":"definition"},{"name":"VCN Pipeline","description":"5-stage video compute network: Delta+RLE → Reed-Solomon ECC → ChaCha20 → H.264 encode → MKV container; 50× bandwidth reduction.","type":"architecture"},{"name":"FrameDispatcher","description":"Tag-based frame router: TAG_STRAND/TAG_CROSSING/TAG_PIST → VCNBraidBackend, TAG_LUPINE → CUDABackend, TAG_VAAPI → VAAPIBackend, TAG_FLAC → FLACBackend.","type":"architecture"},{"name":"RayVCNBridge","description":"@ray.remote actor hosting FrameDispatcher with GPU+Braid backends; replaces Unix socket IPC + TCP transport + MKV encode/decode.","type":"tool"},{"name":"device_capability_probe.py","description":"Scans DRM render nodes, FFmpeg encoders, framebuffer devices, and network to classify devices into compute tiers.","type":"tool"},{"name":"PistPacket","description":"Ethernet computation protocol: structured compute packets via virtio-net TX/RX rings with Q16_16 fixed-point payload.","type":"protocol"},{"name":"Latency-Aware Scheduling","description":"Classes: LOCAL(<1ms), NEAR(<10ms), FAR(<100ms), DERP(<1s), OFFLINE(≥1s) with FPGA voltage mapping.","type":"algorithm"},{"name":"Q0_16 / Q16_16","description":"Fixed-point arithmetic foundation: Q0_16 (16-bit pure fraction, range [-1,1]) as default, Q16_16 (32-bit mixed) when range demands. No Float in compute paths.","type":"primitive"},{"name":"Tailscale Mesh","description":"WireGuard tunnels with direct P2P, DERP relay fallback, post-quantum Kyber768, MagicDNS, subnet routing.","type":"protocol"}],"tags":["architecture","wiki","VCN","Ray","Tailscale","compute-fabric","fixed-point","k3s"],"layer":"infrastructure","dependencies":[],"summary":"Comprehensive architecture wiki covering the 5-layer compute fabric, 12 compute tiers, VCN pipeline, Ray integration, device probing, and mesh networking."}
{"file":"docs/README.md","title":"docs/ README","concepts":[],"tags":["documentation","legacy"],"layer":"documentation","dependencies":[],"summary":"Legacy alias pointing to 6-Documentation/docs/ as the authoritative documentation tree."}
{"file":"docs/concepts/GAMMA_RADIX_METAPROBE.md","title":"Gamma Radix MetaProbe","concepts":[{"name":"Gamma Radix MetaProbe","description":"Symbolic, receipt-bearing pulse-tracing architecture using gamma-length transmission as radix metaphor for ultra-fine address/probe space with WebGPU/PIST surfaces and FAMM/NUVMAP witness routing.","type":"architecture"},{"name":"Gamma Packet Primitive","description":"Gamma_i = gamma_i ⊗ chi_i ⊗ kappa_i ⊗ tau_i ⊗ U_i Lambda_i a_i ⊗ theta_i ⊗ epsilon_i — energy, chirality, interaction kernel, delay, spectral decomposition, routing angle, residual scar.","type":"definition"},{"name":"Radix Basis","description":"R_Gamma = {E, theta, phi, t, chi, kappa, rho, sigma, epsilon} — multi-axis pulse-state basis for addressing.","type":"definition"},{"name":"Settlement Avoidance","description":"Savings from replacing full execution+storage+commit with probe+witness+selective export.","type":"pattern"},{"name":"Sparse Residual Transmission","description":"Transmit generator + route witness + residual repair instead of full state.","type":"pattern"},{"name":"Cacheable Probe Fields","description":"Same packet class + same boundary condition → reuse prior branch witness.","type":"pattern"},{"name":"Compute Triage","description":"Low residual→accept/cache/compress, medium→refine locally, high→route to FAMM scar/reject/quarantine, impossible→NaN/no commit.","type":"algorithm"}],"tags":["metaprobe","gamma-radix","probe","WebGPU","FAMM","NUVMAP","BraidStorm","symbolic"],"layer":"core-formalism","dependencies":["FAMM","NUVMAP","BraidStorm"],"summary":"Symbolic pulse-tracing architecture where gamma-scale coordinates are virtual probe names, not physical RAM; savings come from cheap probes replacing committed computation."}
{"file":"docs/architecture/RAINBOW_RACCOON_FAMM_NUVMAP_MANUAL_2026_05_20.md","title":"Rainbow Raccoon / FAMM / NUVMAP Architecture Manual","concepts":[{"name":"Core Keeper Equation","description":"D_hat = V ∘ R ∘ L ∘ E_AttnRes ∘ C ∘ B ∘ N ∘ RRC ∘ Gamma ∘ S(D) — full reconstruction pipeline from static astro computer through verification.","type":"definition"},{"name":"Admissible Reconstruction Topology","description":"The primitive is not storage but admissible reconstruction topology with selective residual memory.","type":"definition"},{"name":"RRC Manifold Typing","description":"RRC(D) = (M_k, Lambda_k, Phi_k, chi_k, epsilon_k, M_semantic) — determines which transforms are lawful, which braid routes are admissible.","type":"definition"},{"name":"NUVMAP Sparse Projection","description":"Sparse topological address space: nu_i = (r_i, chi_i, sigma_i, q_i, h_i); millions of candidates collapse into sparse occupied regions.","type":"definition"},{"name":"BraidStorm Traversal","description":"B(D) = sum_i beta_i where crossings represent reconstruction operations.","type":"definition"},{"name":"Eigensolid","description":"E* = Closure(sum_i R_i) — stable, replayable, low residual, admissible, closure-preserving reconstruction body.","type":"definition"},{"name":"Logogram Alphabet","description":"Callable reconstruction glyphs organized as field (rho, Omega, mu, Phi), carrier (Gamma, chi, kappa, tau, Lambda, epsilon), traversal (beta, R, E*, otimes), repair (Delta, oplus, r), verification (V, H, equivalence) glyphs.","type":"definition"},{"name":"Residual Repair","description":"D_exact = D_approx ⊕ Delta — approximate lawful replay first, exactness restored afterward.","type":"algorithm"},{"name":"FAMM Scar Memory","description":"FAMM stores prior traversal and obstruction experience; a scar is a remembered overlap obstruction.","type":"definition"},{"name":"Attention Residuals Fold-In","description":"E_AttnRes = Closure(sum_i softmax(M_i - Omega_i + S_i) R_i) — selective residual retrieval from Kimi Team arXiv:2603.15031.","type":"algorithm"},{"name":"Inclusion-Exclusion Fold-In","description":"M(E*) = sum M(R_i) - sum overlap(R_i,R_j) + higher-order closure corrections.","type":"algorithm"}],"tags":["architecture","RRC","FAMM","NUVMAP","BraidStorm","eigensolid","logogram","compression"],"layer":"core-formalism","dependencies":["Rainbow Raccoon Compiler","FAMM","NUVMAP","BraidStorm"],"summary":"Architecture manual defining the full reconstruction pipeline D_hat = V∘R∘L∘E_AttnRes∘C∘B∘N∘RRC∘Gamma∘S(D) with compression as lawful manifold replay + residual exactness + selective memory."}
{"file":"docs/speculative-materials/PhotonChasedFerriteTraceFormation.md","title":"Photon-Chased Ferrite Trace Formation","concepts":[{"name":"Photon-Chased Ferrite Trace","description":"Speculative materials concept: use moving electromagnetic activation front to bias redox mineralization along confined channel wall, leaving near-aligned ferrite-like traces.","type":"primitive"},{"name":"Seven-Pattern Mapping","description":"Maps to CHAIN (wall prep → redox leak → activation front → deposition → cleanup → finish), COUPLING, GRADIENT, FEEDBACK, MASS, ENTROPY, SCALING.","type":"pattern"},{"name":"Primary Observable","description":"Anisotropy: sigma_parallel / sigma_perpendicular > 1 — directional transport evidence.","type":"invariant"}],"tags":["speculative","materials","ferrite","electromagnetic","redox","anisotropy"],"layer":"speculative","dependencies":[],"summary":"Speculative materials hypothesis: guided activation field pulls redox-mineralization front down confined channel, leaving aligned ferrite traces; grant-proposal-scale implementation."}
{"file":"docs/roadmaps/RESEARCH_STACK_FOREST_MAP_WATERFALL.md","title":"Research Stack Forest Map Waterfall","concepts":[{"name":"Forest Map Authority Model","description":"Epistemic pipeline: artifact → normalization → fingerprint → graph/equation extraction → candidate roads → authority gate → Graph.lean audit → diff/torsion/curvature → FAMM basin-hold-scar → projections.","type":"architecture"},{"name":"Authority Hierarchy","description":"Graph.lean (canonical graph) > ENE (provenance) > Notion (semantic registry) > Obsidian (workbench) > Neo4j (topology engine) > GraphML/Mermaid/Ace (transport/projection).","type":"definition"},{"name":"Canonical Node Taxonomy","description":"Node types: Artifact, Equation, Variable, Domain, Road, Motif, Source, LightSourceFrame, GraphSnapshot, Route, FAMMState, AuthorityBoundary.","type":"definition"},{"name":"Canonical Edge Taxonomy","description":"Edge types: NORMALIZES_TO, HAS_FINGERPRINT, ROUTES_TO, WRITES_MEMORY, CONTAINS_EQUATION, USES_VARIABLE, SHARES_MOTIF, DERIVES_FROM, CONSTRAINS, PROJECTS_TO, TRANSPORTS_TO, ILLUMINATES, HAS_TORSION, HAS_OUTCOME.","type":"definition"},{"name":"False-Attractor Gates","description":"Gates: operator-context, domain-context, perturbation test, randomized baseline, source-independence check, authority gate.","type":"gate"},{"name":"Torsion Heatmap Categories","description":"Low torsion/repeated→basin candidate, moderate/context→frontier hold, high/repeated→scar candidate, zero-response→degenerate flat.","type":"definition"},{"name":"COUCH Coupling Degeneracy","description":"Problem: identical curvature across kappa regimes implies coupling term or curvature metric not responding to kappa.","type":"invariant"}],"tags":["roadmap","forest-map","authority","Graph.lean","FAMM","torsion","equation-packs"],"layer":"documentation","dependencies":["FAMM","Graph.lean","NUVMAP"],"summary":"9-phase roadmap for completing the Research Stack forest map: authority plumbing, equation inventory, numeric motifs, COUCH fix, basin extraction, torsion heatmap, light sources, Neo4j traversal, closure criteria."}
{"file":"docs/research/VLB_NIBBLE_DELTA_WITNESS_SUBSTRATE_ESTIMATE.md","title":"VLB Nibble-Delta Witness Substrate — Earthside Estimate","concepts":[{"name":"Nibble-Switched Manifold Delta","description":"Encoding updates as sparse counted 4-bit switch events rather than full snapshots; baseline committed once, then sparse counted nibble switches with witness receipt.","type":"algorithm"},{"name":"NibbleSwitch","description":"Structure: locusId, nibble (UInt4), count (run length), polarity (signed Q16), kotCost (signed Q16), receiptId.","type":"definition"},{"name":"ManifoldDelta","description":"Structure: baselineHash, targetHash, sourceDomain, switches[], deltaGCCL, kotCost, replayPass.","type":"definition"},{"name":"Nibble Semantics","description":"High 2 bits = quandary control (00=REJECT, 01=ACCEPT, 10=HOLD, 11=QUARANTINE); low 2 bits = strand selector (00=K/stable, 01=C/winding, 10=M/tension, 11=Y/break).","type":"definition"},{"name":"Compression Estimate","description":"Gain ≈ (N×B) / ((N×r/c)×E + overhead); practical 5×-20× near-term, 25×-100× with good sparsity, 100×+ for telemetry streams.","type":"algorithm"},{"name":"GCCL Integration","description":"Delta valid only when transition is smaller AND lawful; profiles G_geo, G_comp, G_load, G_spec, G_topo, G_arith, G_MNL, G_AMN.","type":"protocol"}],"tags":["compression","nibble-delta","GCCL","witness","manifold","telemetry","ENE"],"layer":"infrastructure","dependencies":["GCCL","NUVMAP","AMMR"],"summary":"Earthside estimate for nibble-switched manifold delta encoding: 5×-20× near-term gain for repo/document/ENE update streams, with every update small, replayable, witnessed, budgeted, quarantinable."}
{"file":"docs/research/OPENAI_UNIT_DISTANCE_FAMM_GUIDE_2026_05_20.md","title":"OpenAI Unit-Distance Disproof as FAMM Solve Pattern","concepts":[{"name":"Cross-Domain Structural Route","description":"Key lesson: cross-domain structural routes can dominate local intuition; the winning proof route existed outside the community-default search basin.","type":"pattern"},{"name":"FAMM Solved-Scar Pattern","description":"OpenAI's unit-distance counterexample as canonical solved-scar: conjecture→obstruction field, counterexample family→braid/eigensolid family, algebraic route→remote NUVMAP sector.","type":"pattern"},{"name":"Attention Residuals Interpretation","description":"Successful route behaved as distant off-diagonal retrieval, not local next-step continuation; softmax-selected remote retrieval may outperform dense local accumulation.","type":"insight"},{"name":"Eigensolid Ranking","description":"Prioritize reusable construction families, scalable symmetry structures, infinite admissible replay over finite examples.","type":"algorithm"}],"tags":["FAMM","Erdős","unit-distance","cross-domain","attention-residuals","NUVMAP","eigensolid"],"layer":"research","dependencies":["FAMM","NUVMAP","BraidStorm"],"summary":"Interprets OpenAI's unit-distance disproof as a FAMM solved-scar pattern: low-obstruction proof manifold existed outside dominant search basin, supporting selective residual retrieval."}
{"file":"docs/research/KOTC_COMPLETION_DAEMON.md","title":"KOTC — Kinetic Operation Token Completion Daemon","concepts":[{"name":"KOTC","description":"Bounded microLLM-style completion daemon treating code completion as auditable compiler operation: request → context → candidate → policy checks → KOT debit → receipt → ACCEPT/REJECT/HOLD/QUARANTINE.","type":"tool"},{"name":"Completion Modes","description":"DRAFT (exploratory scaffold), REPAIR (compiler-error repair), STRICT (core-safe, no floats, no theorem weakening).","type":"definition"},{"name":"Hard Policy Checks","description":"no_float_hot_path, no_unreviewed_physical_claim, no_theorem_weakening, no_unchecked_invariant_introduction, no_unbudgeted_compiler_pass, no_authority_escalation, no_silent_receipt_drop, no_unbounded_recursion.","type":"gate"},{"name":"Quandary Decision States","description":"ACCEPT (passed policy, may stage), REJECT (invalid/irrelevant), HOLD (plausible, needs witness), QUARANTINE (violates policy or unsafe drift).","type":"definition"},{"name":"KOT Receipt","description":"JSON receipt: receipt_type, completion_id, mode, target_module, context_files, symbol_refs, kot_cost_q16, risk, decision, policy_checks, candidate_hash, notes.","type":"receipt"}],"tags":["KOTC","completion","code-assistant","KOT","policy","receipt","OTOM"],"layer":"infrastructure","dependencies":["KOT","OTOM Galaxy Compiler"],"summary":"Bounded completion daemon where every suggestion pays KOT, passes policy checks, and emits a receipt before becoming code; not an authority source."}
{"file":"docs/research/GCCL_THEORY_INTRO.md","title":"Introduction to GCCL Theory","concepts":[{"name":"GCCL (Geometric, Cognitive, and Compression Law)","description":"Receipt-bounded framework for validating transformations of structured information across geometry, meaning, and representation; every transition must declare state space, projection, invariants, residual, cost, scale band, and receipt.","type":"definition"},{"name":"UMUP-λ / Invariant Receipt Protocol","description":"Universal model wrapper M = (S, T, I, R, K, P, Q, Λ) — state space, transforms, invariants, residual, cost, projection, quarantine, scale band.","type":"definition"},{"name":"ΔφγKλ","description":"Compression-domain specialization: Δ=residual, φ=invariant preserved, γ=transform pressure, K=cost paid/KOT accounting, λ=scale band.","type":"definition"},{"name":"GCCL-Rep","description":"Transport representation for GCCL transitions: compact representative of a transition class under declared codec, baseline, scale band, and receipt policy.","type":"definition"},{"name":"GCLang","description":"Executable/compiler-facing language layer implementing GCCL passes, gates, receipts, model genomes, KOT costs, invariants, projections, quarantine branches.","type":"definition"},{"name":"Bounded Lawful Surface","description":"BLS(GCCL, B, I, R, K, Λ) — the set of transitions expressible, replayable, checkable, budgeted, and receipted under declared constraints.","type":"definition"},{"name":"Promotion Ladder","description":"RAW_IDEA → SANITIZED_METAPHOR → TOY_MODEL → TYPED_MODEL → RESIDUAL_TESTED → COST_ACCOUNTED → PROOF_CANDIDATE → CORE_MODULE.","type":"gate"},{"name":"Layered Mountain Model","description":"NUVMAP=projection/address, AVMR=vector-state evolution, AMMR=commit/history, O-AMMR=orthogonal/QR-basis, GCCL-Rep=compact transition rope between mountains.","type":"architecture"},{"name":"Goxel","description":"N-space shape inhabiting geometric volume, expressed as bounded scalar sub-manifold; G = {v in R^n : Phi_G(v) <= iso}.","type":"definition"},{"name":"KOT (Kinetic Operation Token)","description":"Accounting layer for action cost: every transformation pays, every payment leaves a trace.","type":"definition"},{"name":"Model Genome","description":"Compact generative encoding of model/transform family: codon → gene → chromosome/module → genome/model family → phenotype/artifact.","type":"definition"},{"name":"GCCL Failure Modes","description":"False unification, projection laundering, compression laundering, metaphor drift, silent loss, scale abuse, cost smuggling, receipt laundering, theorem weakening, unbounded expression.","type":"invariant"}],"tags":["GCCL","theory","framework","receipt-bounded","transformation","compression","cognition","geometry"],"layer":"core-formalism","dependencies":["KOT","NUVMAP","AMMR","AVMR","O-AMMR"],"summary":"Comprehensive theory introduction for GCCL: receipt-bounded law stack where every transformation must declare what changed, survived, was lost, cost, and why valid at claimed scale."}
{"file":"docs/research/GCCL_GENETIC_INFORMATION_MIXTURE_PRIMITIVES.md","title":"GCCL Genetic Information Mixture Primitives","concepts":[{"name":"Mixture Primitive","description":"Coding family admissible in GCCL model genome only when it declares alphabet, arity, direction, ambiguity, transform rules, residual, cost, receipt.","type":"definition"},{"name":"Genetic Alphabet Primitives","description":"DNA(A,C,G,T), RNA(A,C,G,U), complement encoding, purine/pyrimidine class, strong/weak class, gap symbol, unknown symbol, modified base.","type":"primitive"},{"name":"Codon Translation Primitives","description":"Standard codon table, alternative genetic codes, start/stop codon logic, degenerate codon family, synonymous codon usage, reading frame, frameshift.","type":"primitive"},{"name":"Ambiguity Primitives","description":"IUPAC DNA/RNA ambiguity, amino acid ambiguity, degenerate codon notation, wildcard, consensus sequence, profile column, position weight matrix, hidden-state emission.","type":"primitive"},{"name":"Alignment/Assembly Primitives","description":"Pairwise/multiple alignment, CIGAR string, edit script, k-mer, minimizer, de Bruijn graph, string graph, pangenome graph, variation graph, synteny block.","type":"primitive"},{"name":"Compression Primitives","description":"Run-length encoding, Huffman coding, arithmetic coding, BWT, FM-index, suffix array/tree, minimizer index, reference-based compression, Bloom filter, MinHash.","type":"primitive"},{"name":"GCCL-Native Model Genome Primitives","description":"Model codon, gene, chromosome, genome, promoter/suppressor gate, intron/exon region, mutation/crossover/inversion operator, codon-usage pressure, phenotype, fitness.","type":"primitive"},{"name":"Mixture Rules","description":"7 rules: declare active alphabet, declare projection, declare ambiguity, keep biological/GCCL-native separate, every mixture pays KOT, every mixture has residual, every mixture has quarantine path.","type":"gate"}],"tags":["GCCL","genetics","mixture-primitives","bioinformatics","codon","alignment","compression","model-genome"],"layer":"core-formalism","dependencies":["GCCL"],"summary":"Taxonomy of genetic information coding families available as GCCL mixture primitives: alphabets, codons, ambiguities, alignments, variants, regulatory marks, structural graphs, compression indexes, model-genome analogs."}
{"file":"docs/research/ERDOS_FAMM_EIGENSOLID_NOTES_2026_05_20.md","title":"Erdős FAMM / Eigensolid Research Notes","concepts":[{"name":"Erdős Eigensolid Pipeline","description":"solved/scar packets → NUVMAP projection → braid traversal → chirality filtering → rope aggregation → eigensolid closure → exact receipt verification.","type":"algorithm"},{"name":"Color Taxonomy","description":"Green=core exact receipt spine, Blue=active zero-residual reserve, Cyan=wide-alpha cold reserve, Slate=large-alpha cold reserve, Amber=failed gate/negative scar only.","type":"definition"},{"name":"Eigensolid Families","description":"Leaf (exact residue-alpha), Residue (collapse by residue class), Alpha (cross-residue families), Phase (chirality/phase closure), Global (run-now admissible closure body).","type":"definition"},{"name":"Alpha Family Collapse","description":"Useful alpha family {3,7,11,15,19,23} with expanded rescue {27,31,35,39,43,47,51,55,59}; swarm collapses from millions to fixed-alpha divisor-residue channels.","type":"algorithm"},{"name":"Structural Collapse","description":"For fixed alpha: x=(p+alpha)/4, b=px, need e|b² and e≡-b(mod alpha), then y=(b²/e+b)/alpha, z=(e+b)/alpha.","type":"definition"}],"tags":["Erdős","FAMM","eigensolid","braid","NUVMAP","number-theory"],"layer":"research","dependencies":["FAMM","NUVMAP","BraidStorm"],"summary":"Research notes treating solved Erdős structures as FAMM scar priors using NUVMAP projection, braid aggregation, rope collapse, and eigensolid closure to reduce combinatorial explosion."}
{"file":"docs/famm/FAMM_Stigmergic_Route_Memory.md","title":"FAMM — Stigmergic Route Memory","concepts":[{"name":"FAMM (Frustration-Aligned Memory Management)","description":"Route memory that records successes, failures, partial traversals, torsion, basins, and phase deltas so future search is biased away from bad routes and toward lawful attractors.","type":"definition"},{"name":"Stigmergic Bridge","description":"Computational analogue of slime-trail memory: route traversal → trace/scar → basin or frustration signal → biased future search.","type":"bridge"},{"name":"FAMM vs AMMR/AVMR","description":"AMMR=auditable append-only history, AVMR=hierarchical vector-state accumulation, FAMM=frustration-aligned routing bias from prior traversal outcomes.","type":"definition"},{"name":"FAMM Load","description":"L_famm = Sigma² + I_lock + Delta_phi (torsional stress + interlocking energy + phase delta); implemented as FAMMTiming structure in Lean.","type":"definition"},{"name":"FAMM Scheduling","description":"Scheduler asks: has route failed before? partially worked? produced torsion? landed in stable basin? created downstream regret? lower frustration alternative?","type":"algorithm"},{"name":"Seven-Pattern FAMM Mapping","description":"CHAIN (attempt→outcome→scar→decision), FEEDBACK, GRADIENT (frustration basins), MASS (scars/basins/regret), ENTROPY, COUPLING, SCALING.","type":"pattern"}],"tags":["FAMM","stigmergy","route-memory","frustration","basin","scar","scheduling"],"layer":"core-formalism","dependencies":[],"summary":"FAMM as frustration-aligned route memory using stigmergic traces (scars becoming navigation) to bias future search; distinct from AMMR (history) and AVMR (vector accumulation)."}
{"file":"shared-data/artifacts/claim_cross_reference_report_2026-05-21.md","title":"Claim Cross-Reference Report: Attack CSVs vs. Research Stack Repo","concepts":[{"name":"Claim Cross-Reference Audit","description":"Systematic grep-based cross-reference of external attack CSVs against repo evidence, classifying claims as DEFENDED, ORPHANED, RENAMED, or UNEXPECTED_CONNECTION.","type":"receipt"},{"name":"Sidon Addressing","description":"Genuinely novel concept confirmed by attack and implemented in Rust + Python + Lean; the one concept the attack calls 'genuinely new'.","type":"primitive"},{"name":"Epistemic Tags","description":"Repo self-correction mechanism: PRIOR ART, PROJECT DATA, INFERENCE, SPECULATIVE labels on claims.","type":"gate"},{"name":"Attack Mischaracterization Pattern","description":"Attack reads conversational genre (user-requested analogies, what-if hypotheticals) as scientific claims; assistant consistently grounded in computation with explicit warnings.","type":"pattern"}],"tags":["audit","adversarial","cross-reference","self-correction","epistemic"],"layer":"documentation","dependencies":[],"summary":"Cross-referencing external attack CSVs against repo evidence: 5 defended, 2 orphaned, 1 renamed in sample set; attack is directionally correct but mischaracterizes conversational genre."}
{"file":"shared-data/artifacts/lean_expert_agent/qc_report_2026-05-13.md","title":"QC Report — Physics/ Code Structure & Efficiency","concepts":[{"name":"Lean QC Report","description":"Quality control report identifying 4 high-priority (absDiff duplication 4x, scale=65536 duplication 6x, duplicate theorems, dead q16_div), 5 medium, 5 low issues across 8 physics Lean files.","type":"receipt"}],"tags":["QC","Lean","code-quality","duplication","dead-code"],"layer":"core-formalism","dependencies":[],"summary":"QC report finding 14 issues (4 high, 5 medium, 5 low) in physics Lean files; all 8 files build cleanly with 3529 jobs, no circular dependencies."}
{"file":"shared-data/artifacts/lean_expert_agent/AGENTS.md","title":"Lean Expert Agent — AGENTS.md","concepts":[{"name":"Lean Expert Agent","description":"Agent contract for inspecting Lean 4 code: structural health (theorem/def/sorry/native_decide counts), naming conventions, Q0_16/Q16_16 compliance, proof quality, dependency analysis.","type":"protocol"},{"name":"DAG Receipt","description":"Output format: File, Date, Pass (true/false), Issues count with file:line references and severity levels.","type":"receipt"}],"tags":["agent","Lean","inspection","QC","contract"],"layer":"infrastructure","dependencies":[],"summary":"Agent contract for Lean code inspection covering structural health, naming, fixed-point compliance, proof quality, and dependency analysis with DAG receipt output."}
{"file":"shared-data/artifacts/adversarial_review/FULL_ADVERSARIAL_REVIEW_2026-05-31.md","title":"FULL ADVERSARIAL REVIEW — Research Stack","concepts":[{"name":"Adversarial Review","description":"8 parallel adversarial reviewers scanning ~35,000 source files finding 248 total issues: 51 CRITICAL, 76 HIGH, 80 MEDIUM, 41 LOW across Lean, Python, Rust, Verilog, WGSL, TypeScript, Shell.","type":"receipt"},{"name":"Q16_16 Multiply Bug","description":"Verilog q16_lut_core.v:46 — a_reg * b_reg produces Q32.0 not Q16.16; missing >>16 shift; every hardware computation off by 2^16.","type":"invariant"},{"name":"SHA-256 Padding Bug","description":"Verilog cff_accelerator.v:222 — only 62 bits assigned instead of 64-bit big-endian bit count; all hardware hashes incorrect.","type":"invariant"},{"name":"WGSL Data Races","description":"Pervasive non-atomic += on shared storage buffers from multiple workgroups; all GPU compute results non-deterministic.","type":"invariant"},{"name":"Rust Double-Free","description":"teleport-kanban/src/thermodynamic.rs:484 — Arc::from_raw on Arc::as_ptr pointer steals reference count; exploitable memory corruption.","type":"invariant"},{"name":"Credential Exposure","description":"8 files with hardcoded passwords, IPs, tokens including root password over HTTP on public IP.","type":"invariant"},{"name":"942 ofFloat Violations","description":"Systemic violation of AGENTS.md 'no Float in compute paths' mandate across 100+ Lean files.","type":"invariant"},{"name":"Tautological Eigensolid Convergence","description":"BraidEigensolid.lean:171-175 — proof is h_eig (hypothesis IS conclusion); no actual convergence proven.","type":"invariant"}],"tags":["adversarial","security","correctness","Lean","Verilog","WGSL","Rust","Python","audit"],"layer":"documentation","dependencies":[],"summary":"Comprehensive adversarial review finding 248 issues across ~35,000 files; top critical: Verilog Q16_16 multiply wrong, SHA-256 padding wrong, WGSL data races, Rust double-free, credential exposure, 942 ofFloat violations."}
{"file":"shared-data/artifacts/deepseek_review/prime_gap_entropy_collapse_deepseek_deepseek-v4-flash_continuation_20260512T033849Z.md","title":"Prime Gap Entropy Collapse — DeepSeek v4-flash Continuation","concepts":[{"name":"Prime Gap Review Caveats","description":"10 caveats: no ground truth for prime gaps, parameter sensitivity, edge effects, reproducibility requirements, interpretation caveat about false positives.","type":"receipt"}],"tags":["prime-gap","entropy-collapse","statistical-review","DeepSeek"],"layer":"research","dependencies":[],"summary":"Continuation review listing caveats for prime-gap entropy-collapse detection: no ground truth, parameter sensitivity, edge effects, reproducibility requirements."}
{"file":"shared-data/artifacts/adversarial_review/adversarial_semantics_review_2026-05-31.md","title":"Adversarial Review: Semantics Lean Codebase","concepts":[{"name":"QFactor Double-Scaling Bug","description":"QFactor.lean:57 — ofNat 65536 creates Q16_16 with raw 4294967296 which saturates to q16MaxRaw; numerator always multiplied by ~32768 instead of 65536.","type":"invariant"},{"name":"sub_eq_add_neg Admitted","description":"FixedPoint.lean:722 — known false at q16MinRaw because neg overflows; exported and usable by downstream modules.","type":"invariant"},{"name":"abs_mul_le Admitted","description":"FixedPoint.lean:778 — unconditionally false; SSMS ACI theorem depends on it.","type":"invariant"},{"name":"abs_triangle Admitted","description":"FixedPoint.lean:788 — false in general; downstream modules can derive False.","type":"invariant"},{"name":"Division by Zero Asymmetry","description":"AVM.lean:99-103 — Q16_16 div by 0 returns infinity (maxVal), Int div by 0 is silent no-op; divergent behavior by type.","type":"invariant"},{"name":"Tautological Convergence","description":"BraidEigensolid.lean:171-175 — proof is h_eig (hypothesis IS conclusion); does not prove crossStep actually converges.","type":"invariant"},{"name":"Sidon Slack Underflow","description":"BraidEigensolid.lean:127 — if slot > 128, UInt32 subtraction wraps; no precondition ensures slot ≤ 128.","type":"invariant"},{"name":"CERNEigensolidData Spurious Axioms","description":"9 axioms asserting True — trivially provable, serve no logical purpose, create appearance of formalized physics constraints (provenance theater).","type":"invariant"},{"name":"AVMIsa Missing Primitives","description":"Prim.addSatQ16 and subSatQ16 declared but not implemented in evalPrim; always return typeMismatch error.","type":"invariant"},{"name":"Q16_16 Constants via ofFloat","description":"pi, e, ln2, sqrt2 defined via ofFloat causing 1 LSB error; should use ofRatio.","type":"invariant"},{"name":"FixedPoint.lean False Theorems","description":"Three admitted theorems (sub_eq_add_neg, abs_mul_le, abs_triangle) known false; SSMS ACI depends on them; entire proof database inconsistent.","type":"invariant"},{"name":"ofFloat Proliferation","description":"942 ofFloat calls violate AGENTS.md mandate; codebase not deterministic across platforms.","type":"invariant"}],"tags":["adversarial","Lean","Semantics","proof-integrity","Q16_16","bugs","security"],"layer":"core-formalism","dependencies":[],"summary":"Deep adversarial review of Semantics Lean codebase: 7 CRITICAL (QFactor double-scaling, false theorems, division asymmetry, 942 ofFloat), 12 HIGH (tautological convergence, missing primitives, spurious axioms), 18 MEDIUM, 9 LOW."}
{"file":"shared-data/artifacts/deepseek_review/prime_gap_entropy_collapse_deepseek_deepseek-v3.2_20260512T033551Z.md","title":"Prime Gap Entropy Collapse — DeepSeek v3.2 Review","concepts":[{"name":"K=7 Threshold Invalid","description":"FPR ≈94.57% under random-permutation null; K=7 is non-selective heuristic.","type":"invariant"},{"name":"K=21 Corrected Threshold","description":"Strict >21: 3.05% FPR; inclusive >=21: 5.43% FPR; calibrated to ~5% FPR under random-permutation null.","type":"definition"},{"name":"Prime Gap Signal Attenuation","description":"Original >7: 86,565 fires (8.66%); corrected >21: 38 fires (0.0038%); surviving windows are rare candidate motifs, not general phenomenon.","type":"receipt"},{"name":"Permutation Null Mismatch","description":"Prime gaps violate random-permutation null due to ties, non-uniform marginal distribution, local dependence; permutation-based FPRs not applicable.","type":"invariant"},{"name":"Fusion Rule","description":"braid(t→t+1) AND sigma_q(t+1) AND D_q(t+1) correctly targets turbulent transition into collapsed arrival window.","type":"algorithm"}],"tags":["prime-gap","statistical-review","entropy-collapse","FPR","permutation-test","DeepSeek"],"layer":"research","dependencies":[],"summary":"DeepSeek review confirming K=7 is non-selective (94.57% FPR), K=21 is defensible (~5% FPR), prime-gap signal survives but severely attenuated (38 fires vs 86,565); permutation null inappropriate for prime gaps."}
{"file":"e2e/E2E_MASTER_RECEIPT.md","title":"E2E MASTER RECEIPT — End-to-End Trace for E = mc²","concepts":[{"name":"E2E Master Trace","description":"Complete end-to-end trace of E=mc² through 8 steps: EquationShape parsing → Sidon address → Chaos game → Finsler metric → QUBO encoding → QAOA circuit → Hachimoji decoding → Receipt hash.","type":"receipt"},{"name":"EquationShape","description":"⟨n_vars=3, n_ops=2, max_depth=1, n_quantifiers=0, n_relations=1⟩ for E=mc².","type":"definition"},{"name":"Sidon Address","description":"[4,16,16,1,16,1,16,8] — canonical spectral fingerprint of E=mc² using Sidon set {1,2,4,8,16,32,64,128}.","type":"definition"},{"name":"Chaos Game Basin Convergence","description":"Deterministic Sidon-guided chaos game with α=0.5 contraction; converges to q_braid basin in 1390 steps.","type":"algorithm"},{"name":"Finsler Metric Construction","description":"F = α(Fisher) + β(torsion drift) — Randers metric with α=0.4167 base cost and β=0.1500 drift strength.","type":"definition"},{"name":"QUBO Encoding","description":"8 binary variables (Φ,Λ,Ρ,Κ,Ω,Σ,Π,Ζ), 36 couplings; diagonal α costs from Finsler metric, off-diagonal β drift antisymmetric.","type":"definition"},{"name":"QAOA Circuit","description":"p=2 layers, 8 qubits, cost Hamiltonian H_C, mixer H_M; approximation ratio >0.95; ground state [1,0,0,0,0,0,0,0].","type":"algorithm"},{"name":"Hachimoji State Φ","description":"Phase 0°, beautifulTopologicalFolding regime, ambidextrous chirality, forward direction — correct for E=mc² (above φ_GCP, zero contradictions, ordered basin).","type":"definition"},{"name":"Merkle Receipt Tree","description":"SHA-256 hash of all 8 step witnesses; any change to any witness invalidates receipt.","type":"receipt"},{"name":"Chentsov Uniqueness","description":"Fisher information metric is unique Riemannian metric on 8-state Hachimoji probability simplex (proven in ChentsovFinite.lean).","type":"theorem"}],"tags":["e2e","E=mc2","Sidon","chaos-game","Finsler","QUBO","QAOA","Hachimoji","receipt","Lean"],"layer":"application","dependencies":["Sidon Sets","Transport Theory","Hachimoji Substitution","BinnedFormalizations","EquationFractalEncoding"],"summary":"Complete 8-step E2E trace of E=mc² from LaTeX through formal verification, geometric search, quantum optimization, and Hachimoji decoding; 3 PROVEN, 3 COMPUTED, 2 STATED with sorry."}
{"file":"library/CONCEPTUAL_UPGRADE_RECEIPT.md","title":"Conceptual Upgrade Receipt — Operator-Theoretic Hachimoji Codec V2","concepts":[{"name":"HachimojiState4D","description":"4-dimensional state descriptor: (Phase, Chirality, Direction, Regime) — 144 possible 4-tuples, only 8 canonical satisfying all 6 consistency rules.","type":"definition"},{"name":"Consistency Invariant","description":"6 rules: Phase-Direction, Axis-Chirality, Beautiful Phase Range, Horrible Phase Range, Left Chirality-Direction, Regime Half-Plane.","type":"invariant"},{"name":"consistency_error_bound Theorem","description":"¬consistencyInvariant(s) → admission(s,shape) = QUARANTINE — deterministic structural guarantee replacing statistical reasoning.","type":"theorem"},{"name":"Counterexample Detector","description":"Detects old pipeline failure modes: DEGENERATE_PROJECTION, EMPTY_EIGENSPACE, NO_SPECTRAL_STRUCTURE, SAMPLING_NON_TERMINATION, BASE_RATE_LEAKAGE.","type":"tool"},{"name":"Operator C Pipeline","description":"C: Equation → EquationShape → HachimojiState4D → ConsistencyCheck → Admission — deterministic, no sampling, no randomness.","type":"algorithm"},{"name":"Old Pipeline Failure","description":"E∘S pipeline's 92.5% 'purity' was base-rate leakage, not eigenspace recovery; Fiedler vector near center of eigenspace distribution.","type":"invariant"}],"tags":["Hachimoji","codec","operator-theoretic","consistency","Lean","formal-verification"],"layer":"application","dependencies":["ChentsovFinite"],"summary":"V2 Hachimoji codec upgrade from single-dimension regime classifier to 4D state descriptor with deterministic structural guarantee replacing statistical illusion."}
{"file":"library/codec_receipt.md","title":"Hachimoji Codec — Library Receipt","concepts":[{"name":"Hachimoji Codec Pipeline","description":"5-stage pipeline: parse_equation → classify_hachimoji → build_receipt → admit_receipt → emit_stamped; fully deterministic.","type":"algorithm"},{"name":"EquationShape","description":"Structure: n_vars, n_ops, max_depth, n_quantifiers, n_relations — extracted by tokenizing equation string.","type":"definition"},{"name":"HachimojiState (8 Greek States)","description":"Φ(≤3 vars, no quantifiers, 1 relation), Λ(quantifiers, depth≤2), Ρ(>5 ops, no quantifiers, ≤10), Κ(>5 vars, depth≤1), Ω(contradiction), Σ(palindromic), Π(>10 ops), Ζ(default).","type":"definition"},{"name":"LogogramReceipt","description":"Structure: shape, status, regime, payloadBound, contradictionWitness, tearBoundary, detachedMass, residualLane.","type":"definition"},{"name":"Admission Gates","description":"typeAdmissible (regime recognized), projectionAdmissible (payloadBound ∨ tear∧¬detached), mergeAdmissible (¬residualLane).","type":"gate"}],"tags":["Hachimoji","codec","equation-classification","receipt","RRC","deterministic"],"layer":"application","dependencies":["Rainbow Raccoon Compiler","AVMIsa Emit"],"summary":"Deterministic 5-stage codec converting equations to certified emit stamps via Hachimoji state classification and RRC admission gates; same equation → same state → same receipt every time."}
{"file":"library/MASTER_LIBRARY_RECEIPT.md","title":"Master Receipt: Chentsov-Hachimoji Library Integration","concepts":[{"name":"ChentsovFinite.lean","description":"Formal proof that Fisher information metric is unique Riemannian metric on 8-state Hachimoji probability simplex; zero sorry axioms.","type":"theorem"},{"name":"chentsov_finite Theorem","description":"Fisher metric g_ij = δ_ij/π_i is unique on Δ^n for n≥2 — PROVEN.","type":"theorem"},{"name":"chentsov_hachimoji Corollary","description":"Application of Chentsov uniqueness to 8-state Hachimoji system — PROVEN.","type":"theorem"},{"name":"Hachimoji Classification Rules","description":"Priority-based: integrals→TRACE, summation→BIND, equality+quantifier+ca>0.03→ADMIT, no equality→CHALLENGE, etc.","type":"algorithm"},{"name":"Fisher Metric Connection","description":"Chentsov's theorem transforms arbitrary encoding into canonical one; Fisher metric is forced by mathematics of statistical inference on probability simplex.","type":"bridge"},{"name":"RRC Triple Gating","description":"typeAdmissible + projectionAdmissible + mergeAdmissible; all gates derived from canonical Fisher geometry.","type":"gate"}],"tags":["Chentsov","Hachimoji","Fisher-metric","information-geometry","Lean","formal-verification","codec"],"layer":"application","dependencies":["ChentsovFinite","Hachimoji Codec"],"summary":"Integration of Chentsov uniqueness proof with Hachimoji codec: Fisher metric is canonical on 8-state simplex, forcing classification thresholds and RRC gates to be principled rather than heuristic."}
{"file":"pending/lean_unification/README.md","title":"Pending (Lean Unification)","concepts":[{"name":"Lean Unification Quarantine","description":"Folder quarantining files that violate repo's Lean-first direction; Lean defines surfaces, non-Lean only thin shims for transport/runtime.","type":"gate"}],"tags":["quarantine","Lean","unification"],"layer":"infrastructure","dependencies":[],"summary":"Quarantine folder for files violating Lean-first direction; pending port/removal."}
{"file":"plugins/substack-connector/README.md","title":"Substack Connector","concepts":[{"name":"Substack Connector","description":"Repo-local helper for preparing Markdown posts and image assets for Substack; converts IMAGE placeholders, copies assets, emits post.md and post.html.","type":"tool"},{"name":"Existing Post Updater","description":"Authenticated updater using local Substack cookie string; writes timestamped backup before updating remote draft.","type":"tool"}],"tags":["substack","publishing","markdown","connector"],"layer":"application","dependencies":[],"summary":"Local helper for preparing Markdown posts for Substack with image asset handling and authenticated post updating."}
{"file":"workspace-config/README.md","title":"workspace-config README","concepts":[{"name":"Workspace Config","description":"IDE configuration, environment files, tooling setup directory; sensitive values in .env only, package.json for workspace tooling.","type":"definition"}],"tags":["config","IDE","environment"],"layer":"infrastructure","dependencies":[],"summary":"IDE configuration and environment files directory; .env for sensitive values, package.json for workspace tooling."}
{"file":"4-Infrastructure/AGENTS.md","title":"AGENTS.md — Infrastructure And Hardware","concepts":[{"name":"restic","description":"Deduplicated, encrypted, content-addressed backup snapshots with point-in-time restore","type":"tool"},{"name":"Garage","description":"Self-hosted Dynamo-style S3-compatible object store across Tailscale mesh nodes","type":"tool"},{"name":"rclone","description":"Moves raw objects between remotes (Garage↔gdrive) for cold-copy and sync","type":"tool"},{"name":"storage_agent","description":"Full-loop observer/optimizer/actor for restic+Garage+rclone stack with Q16_16 thresholds and receipt hash-chain","type":"tool"},{"name":"storage_agent_receipt_v1","description":"JSON schema for storage agent cycle receipts with observation/decision/action_result and parent_hash chain","type":"receipt"},{"name":"Observe-Decide-Act-Emit loop","description":"Storage agent operational pattern: observe cluster state, decide triggers, execute actions, emit receipts","type":"pattern"},{"name":"Tailscale mesh topology","description":"Multi-node Garage cluster connected via Tailscale with RPC port 3901 and S3 port 3900","type":"architecture"},{"name":"Q16_16 threshold constants","description":"All storage agent numeric thresholds encoded as Q16_16 fixed-point UInt32 (one=0x00010000)","type":"invariant"},{"name":"git post-commit hook","description":"Automatically runs db-consolidate offload+consolidate after every commit, non-blocking","type":"recipe"},{"name":"restic-backup.timer","description":"Systemd timer firing at 03:00 daily running backup.sh full (snap+cold-copy+sync+forget+verify)","type":"recipe"},{"name":"Compute Dispatch (WGSL)","description":"All compute shaders as WGSL source; dispatch via wgpu Rust with transparent Vulkan/CPU/WebGPU backend selection","type":"architecture"},{"name":"VCN compute substrate","description":"AMD VCN/NVIDIA NVENC H.264 hardware video encoder as compute device via MKV trick with BraidStrand payloads","type":"tool"},{"name":"braid_diat_codec","description":"ChiralityDIAT + MountainPacked + BraidResidual + BraidDiatFrame compression codec","type":"tool"},{"name":"spirv_copy_if_optimizer","description":"SPIR-V OpPhi→OpSelect transform eliminating branch overhead; emits CopyIfPattern","type":"tool"},{"name":"virtio_net_transform","description":"Virtio-net ring as computation pipeline: HASH_REPORT, TSO, MRG_RXBUF as Class-1 primitives","type":"tool"},{"name":"qemu_framebuffer_packer","description":"QEMU graphics framebuffer packer mapping Q16_16 scalars to ARGB8888 pixels for zero-copy DMA","type":"tool"},{"name":"geometric_entropy_explorer","description":"Places 8 braid strands on torus/sphere/cube, maximizes Shannon entropy via gradient descent","type":"tool"},{"name":"candidate_certification_bridge","description":"Bridge from entropy exploration JSON → Lean Candidates.lean with BraidState fixtures","type":"bridge"},{"name":"eigensolid_lean_bridge","description":"Lean-to-Postgres bridge executing Lean evaluations and extracting Q16_16 coordinates","type":"bridge"},{"name":"flac_dsp_node","description":"PipeWire/FLAC DSP node registration and spectral analysis for volunteer computing","type":"tool"},{"name":"ENE schema (braid eigensolid)","description":"Database tables: prover_state, prover_instances, sidon_labels, crossing_weights, eigensolid_snapshots, braid_strands","type":"schema"},{"name":"Cloudflare Workers edge","description":"WASM trinary VM core implementing Q0_16 scalar compute at edge","type":"architecture"},{"name":"rrc_refactor_oracle","description":"Chaos-game-driven RRC self-refactoring oracle generating PRUNE/MERGE/PROMOTE/SPLIT commands","type":"tool"},{"name":"rrc_bosonic_tensor_gpu","description":"GPU-accelerated Bosonic Tensor Network Centrality using wgpu (Vulkan) adaptive RK4","type":"tool"}],"tags":["infrastructure","storage","backup","garage","restic","rclone","tailscale","shim","fpga","wgsl","compute","braid","eigensolid","receipt","Q16_16"],"layer":"4-Infrastructure","dependencies":["Q16_16","Sidon labels","BraidStorm","eigensolid","receipt","restic","Garage","rclone","wgpu","WGSL","Tailscale"],"summary":"Infrastructure AGENTS.md covering storage stack (restic+Garage+rclone), storage agent with Q16_16 threshold receipts, Tailscale mesh topology, compute dispatch via WGSL/wgpu, and 20+ shim tools for braid compression, FPGA, GPU, and DSP workloads."}
{"file":"0-Core-Formalism/README.md","title":"0-Core-Formalism — Formal Foundations","concepts":[{"name":"bind","description":"State → (State → Action) → State — the fundamental state transition primitive","type":"primitive"},{"name":"TriumvirateClock","description":"Ternary consensus mechanism with ADD/PAUSE/SUBTRACT roles","type":"architecture"},{"name":"Builder/Judge/Warden","description":"Three roles mapped to hardware registers for Triumvirate consensus","type":"definition"},{"name":"OTOM","description":"Ordered Transformation & Orchestration Model — core orchestration primitive","type":"definition"},{"name":"Q16_16 fixed-point constraint","description":"Core compute paths use Q16_16; Float forbidden; ofFloat only at external boundary","type":"invariant"},{"name":"lake build baseline","description":"Current baseline: lake build reports 3314 jobs, 0 errors","type":"receipt"},{"name":"Semantics.SDPVerify","description":"SDP verification module in Lean/Semantics","type":"gate"},{"name":"Semantics.GoormaghtighCert","description":"Goormaghtigh conjecture certification module","type":"theorem"},{"name":"Semantics.HachimojiManifoldAxiom","description":"Hachimoji DNA manifold axiom module","type":"definition"},{"name":"Semantics.GeneticBraidBridge","description":"Bridge module connecting genetic structures to braid theory","type":"bridge"},{"name":"Semantics.SieveLemmas","description":"Sieve lemma module for formal proofs","type":"theorem"},{"name":"Semantics.InteractionGraphSidon","description":"Interaction graph with Sidon label constraints","type":"theorem"}],"tags":["core","formalism","lean","semantics","bind","consensus","Q16_16","fixed-point","formal-verification"],"layer":"0-Core-Formalism","dependencies":["Q16_16","TriumvirateClock","OTOM"],"summary":"Core formalism README defining bind primitive, TriumvirateClock consensus, Builder/Judge/Warden roles, OTOM model, Q16_16 fixed-point invariant, and listing blessed Lean/Semantics modules with 3314-job build baseline."}
{"file":"scripts/qc-flag/AGENTS.md","title":"QC Flagger — AGENTS.md","concepts":[{"name":"QC Flagger","description":"Automated code quality inspection for Lean files implementing 7-check protocol","type":"tool"},{"name":"7-check inspection protocol","description":"Structural health, naming conventions, Q16_16 compliance, proof quality, dependency analysis, compression theorem pair, AGENTS.md compliance","type":"protocol"},{"name":"Structural Health check","description":"Theorem/def/eval/sorry counts, empty theorems, tautologies, unused imports, set_option suppressions","type":"gate"},{"name":"Q16_16 Compliance check","description":"Flags Float/ofFloat usage in hot-path code outside JSON/sensor boundary shims","type":"gate"},{"name":"Compression Theorem Pair check","description":"Every compression module must provide eigensolid_convergence AND receipt_invertible","type":"gate"},{"name":"Naming Conventions check","description":"PascalCase for files/types, camelCase for functions/theorems, banned prefixes/suffixes","type":"gate"},{"name":"Proof Quality check","description":"Defs without companion theorems, .get! without .isSome, native_decide coverage","type":"gate"}],"tags":["qc","quality","lean","inspection","tool","verification","Q16_16"],"layer":"scripts","dependencies":["eigensolid_convergence","receipt_invertible","Q16_16"],"summary":"QC Flagger tool implementing 7-check Lean inspection protocol covering structural health, naming, Q16_16 compliance, proof quality, dependencies, compression theorem pairs, and AGENTS.md compliance."}
{"file":"scripts/qc-flag/reports/20260513_223804/qc_flags.md","title":"QC Flag Report — UniversalBridge.lean (2026-05-13 22:38)","concepts":[{"name":"UniversalBridge QC report","description":"QC inspection of Physics/UniversalBridge.lean: 26 theorems, 20 defs, 0 sorries, 0 tautologies, 10 naming warnings","type":"receipt"},{"name":"naming_conventions warnings","description":"10 warnings for non-camelCase function names (RE_LAMINAR, H_INTERVAL, q16_add, etc.)","type":"gate"},{"name":"normalizedT companion gap","description":"def normalizedT at line 47 has no companion theorem or #eval witness","type":"gate"}],"tags":["qc","report","lean","universal-bridge","naming","proof-quality"],"layer":"scripts","dependencies":["QC Flagger","UniversalBridge"],"summary":"QC report for UniversalBridge.lean showing PASS with 10 naming convention warnings and 1 missing companion theorem. Zero sorries, zero tautologies."}
{"file":"scripts/qc-flag/reports/20260513_223537/qc_flags.md","title":"QC Flag Report — UniversalBridge.lean (2026-05-13 22:35)","concepts":[{"name":"UniversalBridge QC report (duplicate)","description":"Earlier run of same QC inspection, identical results: PASS with 10 issues","type":"receipt"}],"tags":["qc","report","lean","duplicate"],"layer":"scripts","dependencies":["QC Flagger"],"summary":"Duplicate QC report for UniversalBridge.lean, identical to the 22:38 run. PASS with 10 naming warnings."}
{"file":"2-Search-Space/README.md","title":"2-Search-Space — Quaternion, Braid, and Manifold Primitives","concepts":[{"name":"PIST","description":"Perfectly Imperfect Square Theory — core search space primitive","type":"primitive"},{"name":"SVQF","description":"Spherical Quaternion Vector Field for high-dimensional navigation","type":"primitive"},{"name":"FAMM","description":"Frustration-Aware Manifold Mesh for search space topology","type":"primitive"},{"name":"Braid Theory","description":"Topological constraints via braid brackets (planned)","type":"primitive"},{"name":"Quaternion Sieve","description":"Counter-rotation as band-pass filter optimization","type":"algorithm"},{"name":"Non-linear Gearbox","description":"φ-based fractional steps for search optimization","type":"algorithm"},{"name":"Calabi-Yau Compactification","description":"Discarded space folded into compactified dimensions","type":"definition"},{"name":"Ricci Flow","description":"Self-smoothing via ∂g_ij/∂t = -2R_ij","type":"algorithm"}],"tags":["search-space","quaternion","braid","manifold","PIST","SVQF","FAMM","Q16_16"],"layer":"2-Search-Space","dependencies":["Q16_16","0-Core-Formalism"],"summary":"Search space layer defining quaternion, braid, and manifold primitives (PIST, SVQF, FAMM) with key optimizations including Quaternion Sieve, φ-based gearbox, Calabi-Yau compactification, and Ricci flow. Fixed-point Q16_16 throughout."}
{"file":"3-Mathematical-Models/README.md","title":"3-Mathematical-Models — Equation Registry and Proof Tracking","concepts":[{"name":"Equation Registry","description":"Central TSV registry with Model_Name, Family, Equation, Variables, Purpose, Location, Implemented, Status, Cross_Refs, Domain_Type, Bind_Class","type":"spec"},{"name":"Mathlib database","description":"Database of mathematical library references for equation tracking","type":"tool"}],"tags":["mathematical-models","equations","registry","proof-tracking"],"layer":"3-Mathematical-Models","dependencies":["0-Core-Formalism","2-Search-Space"],"summary":"Central equation registry, proof tracking, and mathematical substrate index. All new mathematical models must be added to the registry before creating separate documentation."}
{"file":"3-Mathematical-Models/variable_omega_edge_anomalies.md","title":"Variable Torsional Rotation: Edge-of-Universe Anomalies","concepts":[{"name":"Variable ω field","description":"Torsional frequency ω = ω(θ, x, t) varying in space and time, where different regions unwind at different rates","type":"definition"},{"name":"Torsional wave equation","description":"∇²ω - (1/c_θ²) ∂²ω/∂t² = -ρ_τ / τ_0 — torsional frequency field equation","type":"definition"},{"name":"Methuselah star resolution","description":"HD 140283 appears older than universe due to local underdensity (5% → τ_local/t ≈ 1.053)","type":"definition"},{"name":"JWST early galaxies resolution","description":"Overdense regions with T(x) high → ω low → local clock runs faster → galaxies appear mature","type":"definition"},{"name":"Hubble tension as torsional gradient","description":"H_0(x) = ω(x) · H_0^(global) / ω_0 — local volume underdense → biased H_0 measurement","type":"definition"},{"name":"Dark flow explanation","description":"Large-scale ω gradient pulls everything toward region of lower ω (faster unwinding)","type":"definition"},{"name":"Axis of evil explanation","description":"Directional ω anisotropy at z=1100 creates dipolar modulation projecting onto quadrupole/octupole","type":"definition"},{"name":"Variable ω compression analogy","description":"Decoder clock rate varies with local context density — slow for repetitive data, fast for novel data","type":"pattern"}],"tags":["cosmology","torsion","anomalies","Hubble-tension","JWST","Methuselah-star","dark-flow","axis-of-evil","compression"],"layer":"3-Mathematical-Models","dependencies":["torsional cosmology","Hubble tension","ΛCDM"],"summary":"Proposes variable torsional frequency ω(θ,x,t) as unified explanation for five cosmological anomalies: Methuselah star age, JWST early galaxies, Hubble tension, dark flow, and CMB axis of evil. Includes compression analogy with variable-rate decoder clock."}
{"file":"3-Mathematical-Models/universal_evolutionary_equation.md","title":"Universal Evolutionary Equation","concepts":[{"name":"Evolutionary Operator Ψ_E","description":"Phenotype(x,t) = Ψ_E[Genotype(x) × Regulatory_State(t)] — the conserved operator reused across 120 Myr of butterfly evolution","type":"definition"},{"name":"Convergent evolution as shared operator","description":"Seven butterfly lineages + one moth converge on identical patterns using same genetic toolkit — Ψ_E is frozen-in invariant","type":"theorem"},{"name":"Multilayer Moiré Decoder","description":"Computational analog of Ψ_E: 4-layer basis fusion with gap adaptation and twist angles","type":"architecture"},{"name":"DNA inversion mechanism","description":"Mirror involution t → 2k+1-t — 180° twist between van der Waals layers, preserves topology","type":"definition"},{"name":"Equation Stack","description":"Nested operators: Universe = Ψ_gravity[Ψ_QFT[Ψ_chemistry[Ψ_genetics[Ψ_ecology]]]]","type":"definition"},{"name":"Conservation law of Ψ","description":"Operator is topologically protected — cannot change without destroying information it carries","type":"invariant"},{"name":"Compression spectral entropy bound","description":"Compression ratio bounded by H_Ψ(data) = -Σ p(n) log₂ p_Ψ(n) ≤ 8 bits/byte","type":"theorem"}],"tags":["evolution","genetics","compression","moire","operator","convergence","butterflies","DNA","PIST"],"layer":"3-Mathematical-Models","dependencies":["unified equation","PIST","moire decoder","Ψ_E"],"summary":"Universal evolutionary equation showing that convergent evolution in butterflies reveals a conserved operator Ψ_E, analogous to the multilayer moiré decoder for compression. Observable = Ψ[Conserved_Basis × Dynamic_Context]."}
{"file":"3-Mathematical-Models/unified_equation.md","title":"The Unified Equation","concepts":[{"name":"Unified equation","description":"Ω(n,θ,α) = Ψ[B(θ) ⊗ C(n,α)] ⊕ Δ(n,θ,α) — universal form collapsing physics, biology, compression","type":"definition"},{"name":"Domain collapse","description":"Same equation maps to muon g-2, cosmology, thermodynamics, quantum mechanics, evolution, genetics, materials, compression","type":"pattern"},{"name":"Degenerate forms","description":"Δ→0: deterministic lossless; Ψ=identity: raw measurement; B=trivial: context-only; C=trivial: static frozen","type":"definition"},{"name":"Universe as decoder","description":"Universe(t) = Ψ_universe[BigBang_Basis ⊗ Torsional_Context(t)] ⊕ Quantum_Foam_Noise","type":"definition"}],"tags":["unified-equation","physics","compression","operator","basis","context","residual"],"layer":"3-Mathematical-Models","dependencies":["universal evolutionary equation","PIST","torsional cosmology"],"summary":"The unified equation Ω = Ψ[B⊗C] ⊕ Δ collapses 11 domains (particle physics through compression) into one form. Every system encodes state by combining conserved basis with dynamic context through topologically protected operator."}
{"file":"3-Mathematical-Models/uncertainty_from_torsional_vibration.md","title":"Quantum Uncertainty and Double-Slit from Torsional Vibration","concepts":[{"name":"Torsional wavefunction","description":"Ψ(θ,x) = A(x)·exp(iω_Ψθ)·f(θ-θ_0(x)) — quantum state as localized vibration in unwinding field","type":"definition"},{"name":"ℏ as angular resolution","description":"ℏ ≡ Δθ_min — minimum resolvable phase interval, not a constant of nature","type":"definition"},{"name":"Uncertainty from Fourier sampling","description":"Δx·Δp ≥ ℏ/2 derived from sampling theory in θ-space, not operator noncommutativity","type":"theorem"},{"name":"Double-slit from torsional paths","description":"Interference arises because torsional sheet is one connected surface; paths have different phases when recombining","type":"definition"},{"name":"Measurement as phase pinning","description":"Detector applies torsional torque locking phase to reference — like clamping vibrating drumhead","type":"definition"},{"name":"Born rule from mode competition","description":"P(A) = |Ψ_A|²/(|Ψ_A|²+|Ψ_B|²) derived from torsional mode competition, not postulated","type":"theorem"},{"name":"Complementarity from geometry","description":"Resolution-dependent visibility: Δθ >> Δθ_crit → particle-like; Δθ << Δθ_crit → which-path info","type":"definition"},{"name":"Compression analogy","description":"Uncertainty principle = fundamental limit of prediction given finite context; wave = model's uncertainty, particle = actual outcome","type":"pattern"}],"tags":["quantum-mechanics","uncertainty","double-slit","torsion","measurement","Born-rule","complementarity","compression"],"layer":"3-Mathematical-Models","dependencies":["torsional cosmology","Heisenberg uncertainty","Fourier analysis"],"summary":"Derives Heisenberg uncertainty principle and double-slit interference from torsional vibration geometry. ℏ is minimum angular resolution; measurement is phase pinning. Rederives QM from geometric premises without new predictions."}
{"file":"3-Mathematical-Models/torsional_cosmology_spin.md","title":"Torsional Cosmology: Time as Unwinding, Spin as Gradient","concepts":[{"name":"Torsional cosmology","description":"Replace time t with torsion angle θ; Big Bang = maximum winding, present = partial unwinding, future = heat death","type":"definition"},{"name":"Torsional metric","description":"ds² = -dθ²/ω(θ)² + a(θ)²[dr²/(1-kr²) + r²dΩ²] + ℓ_P²dθ²Γ(θ)","type":"definition"},{"name":"Spin as winding number","description":"s = (1/2π)∮∇_θφ·dθ — spin-1/2 is Möbius strip in torsional space requiring 720° rotation","type":"definition"},{"name":"Particle spectrum from Fourier","description":"Particle spectrum is Fourier spectrum of torsional unwinding: n=2s (winding number → spin)","type":"theorem"},{"name":"Forces as torsional derivatives","description":"4 forces are different order derivatives of same torsional potential: Gravity=∂⁰, Strong=∂¹, Weak=∂², EM=∂³","type":"definition"},{"name":"Dark energy as residual torsion","description":"ρ_DE(θ) = ρ_foam·(1-θ/θ_max)²; apparent constancy from being inside the system","type":"definition"},{"name":"CMB spectral index prediction","description":"n_s = 1 - 2/(1+θ_max/θ_recombination) ≈ 0.965, matching Planck measurement","type":"theorem"},{"name":"Proton stability from topology","description":"Baryon number is torsional winding number; decay requires topology change, exponentially suppressed","type":"definition"},{"name":"PIST decoder from torsional geometry","description":"Spin-1/2 predictors as fundamental unit, spin-1 mixing as majority voting, Higgs as global bias — PIST architecture derived from torsion","type":"architecture"}],"tags":["cosmology","torsion","spin","particle-spectrum","forces","dark-energy","CMB","proton-stability","PIST"],"layer":"3-Mathematical-Models","dependencies":["torsional metric","FLRW metric","spin-statistics theorem","PIST"],"summary":"Torsional cosmology framework where time is unwinding angle θ. Spin is winding number, particle spectrum is Fourier spectrum of unwinding, four forces are torsional derivatives at different orders. Predicts CMB n_s ≈ 0.965."}
{"file":"3-Mathematical-Models/thermodynamic_test_recursive_branch_cut.md","title":"Thermodynamic Test of the Recursive Branch-Cut Hypothesis","concepts":[{"name":"Fractal entropy scaling","description":"S(R) ≤ C·R^{D_H}·(E/R^{D_H})^{(D_H-1)/D_H} with D_H = log(2)/log(Φ) ≈ 1.44","type":"definition"},{"name":"Fractal specific heat","description":"C_V ∝ T^{D_s} where D_s = 2D_H/(1+D_H) ≈ 1.18 for fractal spectral dimension","type":"definition"},{"name":"Thermodynamic falsification","description":"Recursive branch-cut hypothesis fails quantitatively for entropy scaling (R^{1.44}) and specific heat (T^{1.18})","type":"gate"},{"name":"Phase transition survival","description":"Theory survives if fractal dimension is emergent large-scale property, not microscopic one","type":"definition"},{"name":"Arrow of time = torsional unwinding","description":"dS/dθ ≥ 0; arrow of time identical to torsional arrow, not separate thermodynamic arrow","type":"definition"},{"name":"Jarzynski equality invariance","description":"Jarzynski equality ⟨exp(-βW)⟩ = exp(-βΔF) cannot be violated by fractal geometry","type":"invariant"},{"name":"Landauer limit invariance","description":"E_min = k_BT ln(2) unchanged by fractal structure; applies to physical erasure, not information packing","type":"invariant"}],"tags":["thermodynamics","fractal","branch-cut","entropy","specific-heat","phase-transitions","falsification","Bekenstein","Landauer"],"layer":"3-Mathematical-Models","dependencies":["recursive branch-cut self-similarity","Bekenstein bound","Jarzynski equality","Landauer limit"],"summary":"Tests recursive branch-cut hypothesis against thermodynamic laws. Fails quantitatively for entropy scaling and specific heat. Survives only as large-scale geometric description. Thermodynamic laws (Carnot, Jarzynski, Landauer) are too robust to be affected."}
{"file":"3-Mathematical-Models/recursive_branch_cut_self_similarity.md","title":"Recursive Branch-Cut Self-Similarity: From Quantum Foam to Superclusters","concepts":[{"name":"Genus-3 hyperbolic surface","description":"Universe embedded in genus-3 surface with fixed angular resolution; branch-cut defects at critical angles","type":"definition"},{"name":"Φ² scaling factor","description":"L_{n+1}/L_n ≈ exp(d_inj) ≈ Φ² ≈ 2.618 — same factor as Fibonacci, DNA helix, golden ratio","type":"definition"},{"name":"Recursive branch-cut tree","description":"At each scale L_n, observer sees: below=homogeneous, at=critical (branch cut), above=4 distinct modes","type":"pattern"},{"name":"Fractal dimension D_f ≈ 1.44","description":"log(2)/log(Φ) — observable signature at phase transition barriers across all scales","type":"definition"},{"name":"DNA chromatin hierarchy","description":"Self-similar DNA packaging: 2→11→30→300→700→1000→10000 nm with branch cuts at each level","type":"pattern"},{"name":"10.5 bp/turn and Φ","description":"DNA helix 10.5 bp/turn; 10.5/Φ ≈ 6.5 ≈ 6.8 nucleosomes per 11-nm fiber turn","type":"definition"},{"name":"Recursive decoder architecture","description":"predict_recursive(n, level): detect branch cut at critical scale, switch to next-level model","type":"algorithm"}],"tags":["self-similarity","fractal","genus-3","golden-ratio","DNA","chromatin","branch-cut","cosmic-web","hierarchy"],"layer":"3-Mathematical-Models","dependencies":["genus-3 surface","golden ratio Φ","fractal dimension","chromatin structure"],"summary":"Recursive self-similar structure from quantum foam to superclusters via genus-3 hyperbolic surface. Φ² ≈ 2.618 scaling between levels. Fractal dimension D_f ≈ 1.44 at phase transitions. Maps to DNA chromatin hierarchy."}
{"file":"3-Mathematical-Models/physics_eqs_mapped_pro.md","title":"Physics Equations — Mapped with Compression & Metaprobe","concepts":[{"name":"Unified equation mapping (pro)","description":"333+ physics equations mapped to Ω = Ψ[B(θ)⊗C(n,α)]⊕Δ(n,θ,α) with detailed symbol tables","type":"spec"},{"name":"Newton to QFT equation coverage","description":"Classical mechanics through quantum field theory: Newton, Lagrange, Hamilton, Maxwell, Schrödinger, Dirac, Standard Model, GR, cosmology, fluid dynamics, optics, thermodynamics","type":"glossary"}],"tags":["physics","equations","mapping","unified-equation","database","reference"],"layer":"3-Mathematical-Models","dependencies":["unified equation"],"summary":"Comprehensive mapping of 333+ physics equations (classical mechanics through QFT and cosmology) to the unified equation form with detailed symbol tables for each."}
{"file":"3-Mathematical-Models/physics_eqs_mapped_parallel.md","title":"Physics Equations — Parallel Mapped","concepts":[{"name":"Parallel equation mapping","description":"6-worker parallel mapping of physics equations to unified form with domain-specific symbol interpretations","type":"spec"}],"tags":["physics","equations","parallel","mapping","reference"],"layer":"3-Mathematical-Models","dependencies":["unified equation"],"summary":"Parallel (6-worker) mapping of physics equations to the unified equation form, covering classical mechanics through cosmology with domain-specific interpretations."}
{"file":"3-Mathematical-Models/physics_eqs_mapped.md","title":"Physics Equations Database — Mapped to Unified Equation","concepts":[{"name":"Physics equations database","description":"333 equations mapped to unified form with domain categories and symbol mappings","type":"spec"}],"tags":["physics","equations","database","mapping","reference"],"layer":"3-Mathematical-Models","dependencies":["unified equation"],"summary":"Database of 333 physics equations mapped to the unified equation Ω = Ψ[B⊗C] ⊕ Δ across all domains from classical mechanics to quantum field theory."}
{"file":"3-Mathematical-Models/physics_eqs_eigenvector_mapped.md","title":"Physics Equations — Eigenvector Cluster Mapping","concepts":[{"name":"Eigenvector cluster analysis","description":"Domain adjacency matrix + principal eigenvector analysis clustering 1388 equations into 5 clusters","type":"algorithm"},{"name":"Cluster 1: Electromagnetism & Circuits","description":"268 equations, eigenvalue 0.968750 — largest cluster by far","type":"definition"},{"name":"Cluster 2: Condensed Matter & Superconductivity","description":"150 equations, eigenvalue 0.969697","type":"definition"},{"name":"Domain adjacency matrix","description":"Matrix of equation-domain relationships used for spectral clustering","type":"algorithm"},{"name":"1388 equation coverage","description":"Massive physics equation database spanning EM, condensed matter, optics, surface science, polymer physics, hydrology, astrophysics, nuclear physics, quantum information, rheology, plasma physics, nanoscience, biophysics, cosmology","type":"glossary"}],"tags":["physics","equations","eigenvector","clustering","spectral-analysis","database"],"layer":"3-Mathematical-Models","dependencies":["physics equations database","spectral clustering"],"summary":"Eigenvector clustering of 1388 physics equations into 5 domain clusters using adjacency matrix spectral analysis. Electromagnetism cluster (268 equations) is dominant. Covers 30+ physics subdomains."}
{"file":"3-Mathematical-Models/physics_compression_bridge.md","title":"From Known Physics to Compression Architecture","concepts":[{"name":"Landauer reversibility → deterministic state","description":"E_dissipated ≥ k_BT·ln(2) per bit erased → decoder must be reversible by construction, no discard operations","type":"bridge"},{"name":"Shannon entropy → residual maximization","description":"H(X) = -Σp(x)log p(x) → decoder's prediction model must maximize residual entropy distribution","type":"bridge"},{"name":"Jaynes maxent → empirical frequency models","description":"Optimal context model is maxent for observed statistics → PIST basis is frequency-ranked pool","type":"bridge"},{"name":"Bennett reversibility → inverse operations","description":"Any computation reversible by retaining intermediates → PIST 8-opcode machine extended with inverses (FUSE→SPLIT)","type":"bridge"},{"name":"Uncertainty principle → complementary models","description":"Δx·Δp ≥ ℏ/2 → decoder needs complementary local/global models; tree address + surface/torus + shell coordinate","type":"bridge"},{"name":"Bell correlations → nonlocal context","description":"CHSH |S| ≤ 2√2 → context mixing must include distant matches, not just recent history","type":"bridge"},{"name":"Bekenstein bound → O(1) basis state","description":"I ≤ 2πRE/(ℏc·ln2) → decoder state should be surface-like; PIST basis = 16 bytes vs data = 10⁹ bytes","type":"bridge"},{"name":"Thermodynamic uncertainty → speed-accuracy tradeoff","description":"(ΔJ)²/⟨J⟩²·σ ≥ 2k_B → fast decoders produce more residuals; gear law C_out = G_AS·C_in","type":"bridge"},{"name":"Fluctuation theorem → low-work trajectories","description":"⟨exp(-βW)⟩ = exp(-βΔF) → decoder learning minimizes cumulative prediction error; FAMM scars record high-work paths","type":"bridge"},{"name":"PIST as thermodynamically optimal","description":"PIST is unique architecture consistent with all 9 known physical laws — not assumed, derived","type":"theorem"}],"tags":["physics","compression","PIST","Landauer","Shannon","Jaynes","Bennett","Bell","Bekenstein","thermodynamics","architecture"],"layer":"3-Mathematical-Models","dependencies":["PIST","Landauer limit","Shannon entropy","Jaynes maxent","Bennett reversibility","Heisenberg uncertainty","Bell inequality","Bekenstein bound","Jarzynski equality","FAMM"],"summary":"Derives PIST compression architecture from 9 known physical laws (Landauer, Shannon, Jaynes, Bennett, Heisenberg, Bell, Bekenstein, thermodynamic uncertainty, fluctuation theorem). PIST is thermodynamically optimal decompression engine."}
{"file":"3-Mathematical-Models/half_mobius_investigation.md","title":"The Half-Möbius Fold: A Cross-Domain Investigation","concepts":[{"name":"Half-Möbius fold","description":"90° twist with branch cut — natural intermediate between periodic (cylinder) and anti-periodic (Möbius) boundary conditions","type":"definition"},{"name":"Topological insulator surface states","description":"Surface Dirac cone is Möbius strip in momentum space; real-space surface is cylinder with virtual branch cut","type":"definition"},{"name":"DNA replication fork as branch cut","description":"Replication fork = branch cut in twisted ribbon; behind=fork: separate cylinders, at=fork: half-Möbius, ahead: double helix","type":"definition"},{"name":"Big Bang as branch cut","description":"Universe topology transitions from pre-Big Bang (unknown) to post-Big Bang (observable) at fold","type":"definition"},{"name":"W mass energy dependence","description":"Predicts W mass depends on production energy near ~2 TeV fold; CDF vs CMS discrepancy explained","type":"definition"},{"name":"Anyonic statistics at fold","description":"Near branch cut: anyonic statistics possible (θ_stat = 0 to π continuously); fold = undefined statistics","type":"definition"},{"name":"Fold crossings in compression","description":"Bosonic regions: periodic context; fermionic regions: anti-periodic; fold: incompressible branch cut correction","type":"pattern"},{"name":"Start codon as fold marker","description":"AUG start codon signals fold crossing; stop codons (UAA/UAG/UGA) mark return to bosonic sequence","type":"definition"}],"tags":["half-Mobius","topology","materials","DNA","cosmology","spin","compression","branch-cut","anyons","topological-insulator"],"layer":"3-Mathematical-Models","dependencies":["topological insulators","DNA topology","spin-statistics theorem","torsional cosmology","PIST"],"summary":"Cross-domain investigation of the half-Möbius fold (90° twist with branch cut) appearing in topological insulators, DNA replication, cosmology, spin-statistics, and compression. Open theoretical conjecture with testable predictions."}
{"file":"3-Mathematical-Models/gut_synthesis_100years.md","title":"GUT Synthesis: What Survives from 100 Years of Attempts","concepts":[{"name":"Kaluza-Klein survival","description":"Apparent forces are shadows of simpler higher-dimensional structure; fifth dimension = fractional order parameter α","type":"definition"},{"name":"Yang-Mills survival","description":"Connection A_μ and curvature F_μν are right language; gauge group is consequence not cause; gauge bosons = collective excitations of shear mode","type":"definition"},{"name":"SU(5) proton stability","description":"Proton stable because baryon number is topological invariant of fractional field; decay suppressed by shear angle mismatch exp(-cot θ_obs)","type":"definition"},{"name":"SO(10) spinor as spectral decomposition","description":"16-dimensional spinor = 4 modes × 4 Dirac components from fractional field spectral decomposition","type":"definition"},{"name":"SUSY → shear duality","description":"Boson-fermion pairing from shear transformation mixing even/odd powers, not supersymmetry; divergences cancelled by fractal dimension","type":"definition"},{"name":"String → noncommuting derivatives","description":"String worldsheet = 2D field theory; [D^α, D^β] ≠ 0 replaces [X^μ, X^ν] = iθ^{μν}","type":"definition"},{"name":"Fractional resonant quantization","description":"Four forces at α = 1, 1/2, 1/3, 1/4 — Fourier decomposition of single shear kernel","type":"definition"}],"tags":["GUT","unification","Kaluza-Klein","Yang-Mills","SU5","SO10","SUSY","string-theory","fractional-derivatives","shear"],"layer":"3-Mathematical-Models","dependencies":["fractional unified field","shear transformation","gauge theory"],"summary":"Honest assessment of 100 years of GUT attempts. Extracts residual truths from Kaluza-Klein, Yang-Mills, SU(5), SO(10), SUSY, and string theory. Proposes fractional operator algebra with resonant quantization as alternative."}
{"file":"3-Mathematical-Models/extracted_equations.md","title":"Extracted Equations from Articles and Theory Documents","concepts":[{"name":"Muon g-2 measurement","description":"a_μ = (|g|-2)/2 = 0.001165920705(114), σ = 0.127 ppm, matched to SM within 0.5σ","type":"definition"},{"name":"Fractional unified field equation","description":"(D_t^α + (-∇²)^β)Ψ = λ|Ψ|^γ Ψ — fractional derivative with self-interaction","type":"definition"},{"name":"Riesz fractional derivative","description":"D^α f(x) = F^{-1}[|k|^α · F[f](k)] with eigenfunctions exp(ikx)","type":"definition"},{"name":"Force emergence table","description":"EM: α=1, Weak: α=1/2, Strong: α=1/3, Gravity: α=1/4 — resonant quantization","type":"definition"},{"name":"Anthropic shear transformation","description":"Ψ_observed(x,t) = ∫K_θ(x-x')Ψ_unified(x',t)dx' — observer-dependent projection","type":"definition"},{"name":"Mode weight under shear","description":"w(α,θ) = sin(θ)^α · cos(θ)^{1-α}","type":"definition"}],"tags":["equations","muon-g2","fractional-derivative","unified-field","shear","force-emergence"],"layer":"3-Mathematical-Models","dependencies":["fractional unified field","muon g-2","Riesz derivative"],"summary":"Extracted equations from CERN articles and fractional unified field theory: muon g-2 measurement, fractional field equation, Riesz derivatives, force emergence via resonant quantization, and anthropic shear transformation."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AMMR.md", "title": "AMMR", "concepts": [{"name": "AMMR", "description": "imports Quaternion, TorsionalPIST; domain: Semantics", "type": "definition"}, {"name": "Quaternion", "description": "dependency of AMMR", "type": "definition"}, {"name": "TorsionalPIST", "description": "dependency of AMMR", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Quaternion", "TorsionalPIST"], "summary": "Module (AMMR) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ASCIIArtCompetition.md", "title": "ASCIIArtCompetition", "concepts": [{"name": "ASCIIArtCompetition", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ASCIIArtCompetition) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ASCIIArtStore.md", "title": "ASCIIArtStore", "concepts": [{"name": "ASCIIArtStore", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ASCIIArtStore) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ASCIIGen.md", "title": "ASCIIGen", "concepts": [{"name": "ASCIIGen", "description": "imports GenomicCompression; domain: Semantics", "type": "definition"}, {"name": "GenomicCompression", "description": "dependency of ASCIIGen", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GenomicCompression"], "summary": "Module (ASCIIGen) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ASICTopology.md", "title": "ASICTopology", "concepts": [{"name": "ASICTopology", "description": "imports FixedPoint, Bind, NICProbe; imported by 2 modules; domain: Semantics", "type": "architecture"}, {"name": "FixedPoint", "description": "dependency of ASICTopology", "type": "definition"}, {"name": "Bind", "description": "dependency of ASICTopology", "type": "definition"}, {"name": "NICProbe", "description": "dependency of ASICTopology", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "NICProbe", "BitcoinMetaprobe"], "summary": "Module (ASICTopology) in the Semantics domain. Imports 3 module(s), imported by 2 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVM.md", "title": "AVM", "concepts": [{"name": "AVM", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AVM", "type": "definition"}, {"name": "Bind", "description": "dependency of AVM", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (AVM) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMR.md", "title": "AVMR", "concepts": [{"name": "AVMR", "description": "imports Spectrum, SpectralField, VecState; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of AVMR", "type": "definition"}, {"name": "SpectralField", "description": "dependency of AVMR", "type": "definition"}, {"name": "VecState", "description": "dependency of AVMR", "type": "definition"}, {"name": "ShellModel", "description": "dependency of AVMR", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AVMR", "type": "definition"}, {"name": "GeneticCode", "description": "dependency of AVMR", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Spectrum", "SpectralField", "VecState", "ShellModel", "FixedPoint", "GeneticCode", "HutterMaximumCompression", "KimiProber"], "summary": "Integration module (AVMR) that composes 6 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMRClassification.md", "title": "AVMRClassification", "concepts": [{"name": "AVMRClassification", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (AVMRClassification) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMRCore.md", "title": "AVMRCore", "concepts": [{"name": "AVMRCore", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (AVMRCore) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMRFrameworkMetaprobe.md", "title": "AVMRFrameworkMetaprobe", "concepts": [{"name": "AVMRFrameworkMetaprobe", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AVMRFrameworkMetaprobe", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (AVMRFrameworkMetaprobe) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMRInformation.md", "title": "AVMRInformation", "concepts": [{"name": "AVMRInformation", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (AVMRInformation) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMRProofs.md", "title": "AVMRProofs", "concepts": [{"name": "AVMRProofs", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (AVMRProofs) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMRTheorems.md", "title": "AVMRTheorems", "concepts": [{"name": "AVMRTheorems", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (AVMRTheorems) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AbelianSandpileRouting.md", "title": "AbelianSandpileRouting", "concepts": [{"name": "AbelianSandpileRouting", "description": "imports NeurodivergentPatternLUT, Genome18, MorphicNeuralNetwork; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "NeurodivergentPatternLUT", "description": "dependency of AbelianSandpileRouting", "type": "definition"}, {"name": "Genome18", "description": "dependency of AbelianSandpileRouting", "type": "definition"}, {"name": "MorphicNeuralNetwork", "description": "dependency of AbelianSandpileRouting", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["NeurodivergentPatternLUT", "Genome18", "MorphicNeuralNetwork", "CouchFilterNormalization"], "summary": "Module (AbelianSandpileRouting) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Adaptation.md", "title": "Adaptation", "concepts": [{"name": "Adaptation", "description": "imports Basic, FixedPoint; imported by 6 modules; domain: Semantics", "type": "definition"}, {"name": "Basic", "description": "dependency of Adaptation", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Adaptation", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Basic", "FixedPoint", "NetworkRAM", "KillerCriterion", "TorsionalPIST", "GenerateLUT", "Ingestion", "KimiProber"], "summary": "Module (Adaptation) in the Semantics domain. Imports 2 module(s), imported by 6 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AffineMappingLTSF.md", "title": "AffineMappingLTSF", "concepts": [{"name": "AffineMappingLTSF", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AffineMappingLTSF", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (AffineMappingLTSF) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AgenticCore.md", "title": "AgenticCore", "concepts": [{"name": "AgenticCore", "description": "imports FixedPoint, TopologicalAwareness; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AgenticCore", "type": "definition"}, {"name": "TopologicalAwareness", "description": "dependency of AgenticCore", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "TopologicalAwareness"], "summary": "Module (AgenticCore) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AgenticOrchestration.md", "title": "AgenticOrchestration", "concepts": [{"name": "AgenticOrchestration", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (AgenticOrchestration) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AgenticOrchestrationField.md", "title": "AgenticOrchestrationField", "concepts": [{"name": "AgenticOrchestrationField", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AgenticOrchestrationField", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (AgenticOrchestrationField) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AgenticTaskAssignment.md", "title": "AgenticTaskAssignment", "concepts": [{"name": "AgenticTaskAssignment", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AgenticTaskAssignment", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (AgenticTaskAssignment) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AgenticTheorems.md", "title": "AgenticTheorems", "concepts": [{"name": "AgenticTheorems", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AgenticTheorems", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (AgenticTheorems) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AnalysisFoundations.md", "title": "AnalysisFoundations", "concepts": [{"name": "AnalysisFoundations", "description": "imported by 1 modules; domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["HamiltonianFormal"], "summary": "Module (AnalysisFoundations) in the Semantics domain. imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AngrySphinx.md", "title": "AngrySphinx", "concepts": [{"name": "AngrySphinx", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AngrySphinx", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (AngrySphinx) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AngrySphinxPolicy.md", "title": "AngrySphinxPolicy", "concepts": [{"name": "AngrySphinxPolicy", "description": "imports Testing_ExtremeParameterTest; domain: Semantics", "type": "definition"}, {"name": "Testing_ExtremeParameterTest", "description": "dependency of AngrySphinxPolicy", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Testing_ExtremeParameterTest"], "summary": "Module (AngrySphinxPolicy) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AtomicResolution.md", "title": "AtomicResolution", "concepts": [{"name": "AtomicResolution", "description": "imports FixedPoint, OrthogonalAmmr, EnvironmentMechanics; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AtomicResolution", "type": "definition"}, {"name": "OrthogonalAmmr", "description": "dependency of AtomicResolution", "type": "definition"}, {"name": "EnvironmentMechanics", "description": "dependency of AtomicResolution", "type": "definition"}, {"name": "LandauerCompression", "description": "dependency of AtomicResolution", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "OrthogonalAmmr", "EnvironmentMechanics", "LandauerCompression", "CompressionMechanics"], "summary": "Integration module (AtomicResolution) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Atoms.md", "title": "Atoms", "concepts": [{"name": "Atoms", "description": "imports FixedPoint; imported by 5 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Atoms", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "FieldSolver", "Lemmas", "Constitution", "Decomposition", "Graph"], "summary": "Module (Atoms) in the Semantics domain. Imports 1 module(s), imported by 5 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Autobalance.md", "title": "Autobalance", "concepts": [{"name": "Autobalance", "description": "imports FixedPoint, Bind; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Autobalance", "type": "definition"}, {"name": "Bind", "description": "dependency of Autobalance", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "OmniNetwork"], "summary": "Module (Autobalance) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BHOCS.md", "title": "BHOCS", "concepts": [{"name": "BHOCS", "description": "imports FixedPoint, OrthogonalAmmr; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BHOCS", "type": "definition"}, {"name": "OrthogonalAmmr", "description": "dependency of BHOCS", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "OrthogonalAmmr"], "summary": "Module (BHOCS) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Basic.md", "title": "Basic", "concepts": [{"name": "Basic", "description": "imports FixedPoint; imported by 4 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Basic", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Adaptation", "CooperativeLUT", "Benchmarks_Grid17x17", "Benchmarks_HadwigerNelson"], "summary": "Module (Basic) in the Semantics domain. Imports 1 module(s), imported by 4 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Benchmarks_Grid17x17.md", "title": "Benchmarks.Grid17x17", "concepts": [{"name": "Benchmarks.Grid17x17", "description": "imports Basic; imported by 1 modules; domain: Semantics", "type": "gate"}, {"name": "Basic", "description": "dependency of Benchmarks.Grid17x17", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Basic", "Testing_TorsionalTest"], "summary": "Module (Benchmarks.Grid17x17) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Benchmarks_HadwigerNelson.md", "title": "Benchmarks.HadwigerNelson", "concepts": [{"name": "Benchmarks.HadwigerNelson", "description": "imports Basic, FixedPoint; domain: Semantics", "type": "gate"}, {"name": "Basic", "description": "dependency of Benchmarks.HadwigerNelson", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Benchmarks.HadwigerNelson", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Basic", "FixedPoint"], "summary": "Module (Benchmarks.HadwigerNelson) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Bind.md", "title": "Bind", "concepts": [{"name": "Bind", "description": "imports FixedPoint; imported by 63 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Bind", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Forgejo", "Github", "Hutter", "InteratomicPotential", "FieldSolver", "MISignal", "ThermodynamicSort", "GPUResourceManager", "NICProbe", "GeometricTopology", "NonEuclideanGeometry", "NNonEuclideanGeometry", "Curvature", "ManifoldNetworking", "TopologyNode", "BraidField", "TopologicalPersistence", "VoxelEncoding", "HutterMaximumCompression", "OpenWorm", "HormoneDeriv", "MorphicNeuralNetwork", "RelationMaskTrainer", "MorphicScalar", "DSPTranslation", "ENEContextTokenCache", "BitcoinMetaprobe", "BitcoinMetaprobeEval", "MinimalBitcoinL3", "MNLOGQuaternionBridge", "SLUQ", "JsonLSurfaceConnector", "Layer3Metaprobe", "Autobalance", "MechanicalLogic", "CacheSieve", "CognitiveLoad", "CollectiveManifoldInterface", "Containment", "CooperativeLUT", "FlagSort", "FuzzyAssociation", "MinimalLayer3Eval", "OEPI", "OmniNetwork", "Protocol", "ASICTopology", "YangMillsLattice", "YangMillsCompression", "YangMillsPerformance", "YangMillsLatticeSizing", "YangMillsCompressionBounds", "Layer3TransmissionModel", "HydrogenicPhiTorsionBraid", "SigmaGate", "CoulombComplexity", "WitnessGrammar", "AVM", "Physics_BindPhysics", "Physics_NBody", "Physics_QCLEnergy", "Testing_ExtremeParameterTest", "Testing_StructuralAttestation"], "summary": "Core foundational module (Bind) with high import fanout (63 dependents). Provides fundamental primitives for the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BindEngine.md", "title": "BindEngine", "concepts": [{"name": "BindEngine", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BindEngine", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (BindEngine) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Biology_BioRxivFormalization.md", "title": "Biology.BioRxivFormalization", "concepts": [{"name": "Biology.BioRxivFormalization", "description": "domain: Semantics", "type": "definition"}], "tags": ["biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (Biology.BioRxivFormalization) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Biology_QuaternionGenomic.md", "title": "Biology.QuaternionGenomic", "concepts": [{"name": "Biology.QuaternionGenomic", "description": "imports FixedPoint, GenomicCompression, ResonanceGradient; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Biology.QuaternionGenomic", "type": "definition"}, {"name": "GenomicCompression", "description": "dependency of Biology.QuaternionGenomic", "type": "definition"}, {"name": "ResonanceGradient", "description": "dependency of Biology.QuaternionGenomic", "type": "definition"}, {"name": "SLUG3", "description": "dependency of Biology.QuaternionGenomic", "type": "definition"}], "tags": ["biology", "genomics", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "GenomicCompression", "ResonanceGradient", "SLUG3", "SLUQQuaternionIntegration"], "summary": "Integration module (Biology.QuaternionGenomic) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Biology_RGFlowBioinformatics.md", "title": "Biology.RGFlowBioinformatics", "concepts": [{"name": "Biology.RGFlowBioinformatics", "description": "imports FixedPoint, SSMS; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Biology.RGFlowBioinformatics", "type": "definition"}, {"name": "SSMS", "description": "dependency of Biology.RGFlowBioinformatics", "type": "definition"}], "tags": ["biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "SSMS", "HutterPrizeRGFlow"], "summary": "Module (Biology.RGFlowBioinformatics) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BitcoinMetaprobe.md", "title": "BitcoinMetaprobe", "concepts": [{"name": "BitcoinMetaprobe", "description": "imports FixedPoint, Bind, ASICTopology; imported by 3 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BitcoinMetaprobe", "type": "definition"}, {"name": "Bind", "description": "dependency of BitcoinMetaprobe", "type": "definition"}, {"name": "ASICTopology", "description": "dependency of BitcoinMetaprobe", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "ASICTopology", "BitcoinMetaprobeEval", "MinimalBitcoinL3", "Layer3Metaprobe"], "summary": "Module (BitcoinMetaprobe) in the Semantics domain. Imports 3 module(s), imported by 3 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BitcoinMetaprobeEval.md", "title": "BitcoinMetaprobeEval", "concepts": [{"name": "BitcoinMetaprobeEval", "description": "imports FixedPoint, Bind, BitcoinMetaprobe; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BitcoinMetaprobeEval", "type": "definition"}, {"name": "Bind", "description": "dependency of BitcoinMetaprobeEval", "type": "definition"}, {"name": "BitcoinMetaprobe", "description": "dependency of BitcoinMetaprobeEval", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "BitcoinMetaprobe"], "summary": "Module (BitcoinMetaprobeEval) in the Semantics domain. Imports 3 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BitcoinRGFlow.md", "title": "BitcoinRGFlow", "concepts": [{"name": "BitcoinRGFlow", "description": "imports SSMS; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "SSMS", "description": "dependency of BitcoinRGFlow", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["SSMS", "Testing_BitcoinRGFlowTest"], "summary": "Module (BitcoinRGFlow) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BoundaryDynamics.md", "title": "BoundaryDynamics", "concepts": [{"name": "BoundaryDynamics", "description": "imports MagnetoPlasma, SpikingDynamics, ExoticSpacetime; imported by 6 modules; domain: Semantics", "type": "definition"}, {"name": "MagnetoPlasma", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "SpikingDynamics", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "ExoticSpacetime", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "ManifoldStructures", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "PhysicsScalar", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "RegimeCore", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "Errors", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "ElectromagneticSpectrum", "description": "dependency of BoundaryDynamics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["MagnetoPlasma", "SpikingDynamics", "ExoticSpacetime", "ManifoldStructures", "PhysicsScalar", "RegimeCore", "Errors", "ElectromagneticSpectrum", "MultiBodyField", "SensorField", "CosmicStructure", "ManifoldPotential", "SubstrateProfile", "CriticalityDynamics"], "summary": "Integration module (BoundaryDynamics) that composes 8 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BracketShellCount.md", "title": "BracketShellCount", "concepts": [{"name": "BracketShellCount", "description": "imports ShellModel, DynamicCanal, BraidBracket; domain: Semantics", "type": "definition"}, {"name": "ShellModel", "description": "dependency of BracketShellCount", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of BracketShellCount", "type": "definition"}, {"name": "BraidBracket", "description": "dependency of BracketShellCount", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["ShellModel", "DynamicCanal", "BraidBracket"], "summary": "Module (BracketShellCount) in the Semantics domain. Imports 3 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BraidBracket.md", "title": "BraidBracket", "concepts": [{"name": "BraidBracket", "description": "imports DynamicCanal; imported by 8 modules; domain: Semantics", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of BraidBracket", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["DynamicCanal", "MasterEquation", "ManifoldFlow", "BraidStrand", "BraidCross", "BracketShellCount", "Connectors", "Decoder", "Testing_CBFTests"], "summary": "Module (BraidBracket) in the Semantics domain. Imports 1 module(s), imported by 8 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BraidCross.md", "title": "BraidCross", "concepts": [{"name": "BraidCross", "description": "imports BraidBracket, FixedPoint, DynamicCanal; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "BraidBracket", "description": "dependency of BraidCross", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BraidCross", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of BraidCross", "type": "definition"}, {"name": "BraidStrand", "description": "dependency of BraidCross", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["BraidBracket", "FixedPoint", "DynamicCanal", "BraidStrand", "Testing_CBFTests"], "summary": "Integration module (BraidCross) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BraidField.md", "title": "BraidField", "concepts": [{"name": "BraidField", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BraidField", "type": "definition"}, {"name": "Bind", "description": "dependency of BraidField", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (BraidField) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BraidStrand.md", "title": "BraidStrand", "concepts": [{"name": "BraidStrand", "description": "imports BraidBracket, FixedPoint, DynamicCanal; imported by 4 modules; domain: Semantics", "type": "definition"}, {"name": "BraidBracket", "description": "dependency of BraidStrand", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BraidStrand", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of BraidStrand", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["BraidBracket", "FixedPoint", "DynamicCanal", "MasterEquation", "BraidCross", "Physics_NBody", "Testing_CBFTests"], "summary": "Module (BraidStrand) in the Semantics domain. Imports 3 module(s), imported by 4 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BrainBoxDescriptor.md", "title": "BrainBoxDescriptor", "concepts": [{"name": "BrainBoxDescriptor", "description": "imports FixedPoint, Q0_16; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BrainBoxDescriptor", "type": "definition"}, {"name": "Q0_16", "description": "dependency of BrainBoxDescriptor", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Q0_16"], "summary": "Module (BrainBoxDescriptor) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CacheSieve.md", "title": "CacheSieve", "concepts": [{"name": "CacheSieve", "description": "imports SLUQ, Bind; domain: Semantics", "type": "definition"}, {"name": "SLUQ", "description": "dependency of CacheSieve", "type": "definition"}, {"name": "Bind", "description": "dependency of CacheSieve", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["SLUQ", "Bind"], "summary": "Module (CacheSieve) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CalibratedKernel.md", "title": "CalibratedKernel", "concepts": [{"name": "CalibratedKernel", "description": "imports DomainKernel; domain: Semantics", "type": "definition"}, {"name": "DomainKernel", "description": "dependency of CalibratedKernel", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["DomainKernel"], "summary": "Module (CalibratedKernel) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Canon.md", "title": "Canon", "concepts": [{"name": "Canon", "description": "imports FixedPoint; imported by 7 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Canon", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Transition", "Evolution", "CanonAdapters", "CanonSerialization", "Pbacs", "Constitution", "Orchestrate"], "summary": "Module (Canon) in the Semantics domain. Imports 1 module(s), imported by 7 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CanonAdapters.md", "title": "CanonAdapters", "concepts": [{"name": "CanonAdapters", "description": "imports FixedPoint, Canon; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CanonAdapters", "type": "definition"}, {"name": "Canon", "description": "dependency of CanonAdapters", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Canon"], "summary": "Module (CanonAdapters) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CanonSerialization.md", "title": "CanonSerialization", "concepts": [{"name": "CanonSerialization", "description": "imports FixedPoint, Canon; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CanonSerialization", "type": "definition"}, {"name": "Canon", "description": "dependency of CanonSerialization", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Canon", "Prohibited"], "summary": "Module (CanonSerialization) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CanonicalInterval.md", "title": "CanonicalInterval", "concepts": [{"name": "CanonicalInterval", "description": "imports FixedPoint; imported by 3 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CanonicalInterval", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "SurfaceCore", "SolitonLighthouse", "EquationTranslation"], "summary": "Module (CanonicalInterval) in the Semantics domain. Imports 1 module(s), imported by 3 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CasimirMetaprobe.md", "title": "CasimirMetaprobe", "concepts": [{"name": "CasimirMetaprobe", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CasimirMetaprobe", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (CasimirMetaprobe) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CausalGeometry.md", "title": "CausalGeometry", "concepts": [{"name": "CausalGeometry", "description": "imports ManifoldStructures, PhysicsScalar, ManifoldPotential; imported by 2 modules; domain: Semantics", "type": "architecture"}, {"name": "ManifoldStructures", "description": "dependency of CausalGeometry", "type": "definition"}, {"name": "PhysicsScalar", "description": "dependency of CausalGeometry", "type": "definition"}, {"name": "ManifoldPotential", "description": "dependency of CausalGeometry", "type": "definition"}, {"name": "Errors", "description": "dependency of CausalGeometry", "type": "definition"}, {"name": "RegimeCore", "description": "dependency of CausalGeometry", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["ManifoldStructures", "PhysicsScalar", "ManifoldPotential", "Errors", "RegimeCore", "SensorField", "SubstrateProfile"], "summary": "Integration module (CausalGeometry) that composes 5 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CellSnowballConstraint.md", "title": "CellSnowballConstraint", "concepts": [{"name": "CellSnowballConstraint", "description": "imports FixedPoint; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CellSnowballConstraint", "type": "definition"}], "tags": ["cell-biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "HumanNeuralCompression"], "summary": "Module (CellSnowballConstraint) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ChatLogConversion.md", "title": "ChatLogConversion", "concepts": [{"name": "ChatLogConversion", "description": "imports FixedPoint, Substrate; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of ChatLogConversion", "type": "definition"}, {"name": "Substrate", "description": "dependency of ChatLogConversion", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Substrate"], "summary": "Module (ChatLogConversion) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ClassicalEuclideanGeometry.md", "title": "ClassicalEuclideanGeometry", "concepts": [{"name": "ClassicalEuclideanGeometry", "description": "domain: Semantics", "type": "architecture"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ClassicalEuclideanGeometry) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CodonOTOM.md", "title": "CodonOTOM", "concepts": [{"name": "CodonOTOM", "description": "imported by 1 modules; domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics", "sink"], "layer": "Documentation", "dependencies": ["CodonPeptideConsistency"], "summary": "Module (CodonOTOM) in the Semantics domain. imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CodonPeptideConsistency.md", "title": "CodonPeptideConsistency", "concepts": [{"name": "CodonPeptideConsistency", "description": "imports CodonOTOM, PeptideMoE; domain: Semantics", "type": "definition"}, {"name": "CodonOTOM", "description": "dependency of CodonPeptideConsistency", "type": "definition"}, {"name": "PeptideMoE", "description": "dependency of CodonPeptideConsistency", "type": "definition"}], "tags": ["ecology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["CodonOTOM", "PeptideMoE"], "summary": "Module (CodonPeptideConsistency) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CognitiveLoad.md", "title": "CognitiveLoad", "concepts": [{"name": "CognitiveLoad", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CognitiveLoad", "type": "definition"}, {"name": "Bind", "description": "dependency of CognitiveLoad", "type": "definition"}], "tags": ["cognitive-science", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (CognitiveLoad) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CognitiveMorphemics.md", "title": "CognitiveMorphemics", "concepts": [{"name": "CognitiveMorphemics", "description": "imports Quaternion, TorsionalPIST, DynamicCanal; domain: Semantics", "type": "definition"}, {"name": "Quaternion", "description": "dependency of CognitiveMorphemics", "type": "definition"}, {"name": "TorsionalPIST", "description": "dependency of CognitiveMorphemics", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of CognitiveMorphemics", "type": "definition"}], "tags": ["cognitive-science", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Quaternion", "TorsionalPIST", "DynamicCanal"], "summary": "Module (CognitiveMorphemics) in the Semantics domain. Imports 3 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CollectiveManifoldInterface.md", "title": "CollectiveManifoldInterface", "concepts": [{"name": "CollectiveManifoldInterface", "description": "imports MorphicScalar, Bind, S3C; domain: Semantics", "type": "definition"}, {"name": "MorphicScalar", "description": "dependency of CollectiveManifoldInterface", "type": "definition"}, {"name": "Bind", "description": "dependency of CollectiveManifoldInterface", "type": "definition"}, {"name": "S3C", "description": "dependency of CollectiveManifoldInterface", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["MorphicScalar", "Bind", "S3C"], "summary": "Module (CollectiveManifoldInterface) in the Semantics domain. Imports 3 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Bind.md", "title": "Components.Bind", "concepts": [{"name": "Components.Bind", "description": "imports FixedPoint, Components_Core, Components_Quaternion; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Components.Bind", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.Bind", "type": "definition"}, {"name": "Components_Quaternion", "description": "dependency of Components.Bind", "type": "definition"}, {"name": "Components_Gradient", "description": "dependency of Components.Bind", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Components_Core", "Components_Quaternion", "Components_Gradient", "Components_Composition", "Components_Demo"], "summary": "Integration module (Components.Bind) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Composition.md", "title": "Components.Composition", "concepts": [{"name": "Components.Composition", "description": "imports Components_Core, Components_Quaternion, Components_Bind; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.Composition", "type": "definition"}, {"name": "Components_Quaternion", "description": "dependency of Components.Composition", "type": "definition"}, {"name": "Components_Bind", "description": "dependency of Components.Composition", "type": "definition"}, {"name": "Components_Gradient", "description": "dependency of Components.Composition", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Components_Core", "Components_Quaternion", "Components_Bind", "Components_Gradient", "Components_Demo"], "summary": "Integration module (Components.Composition) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Core.md", "title": "Components.Core", "concepts": [{"name": "Components.Core", "description": "imports FixedPoint; imported by 7 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Components.Core", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Components_Bind", "Components_Composition", "Components_Demo", "Components_Gradient", "Components_Pipeline", "Components_Quaternion", "Components_State"], "summary": "Module (Components.Core) in the Semantics domain. Imports 1 module(s), imported by 7 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Demo.md", "title": "Components.Demo", "concepts": [{"name": "Components.Demo", "description": "imports Components_Quaternion, Components_Gradient, Components_Core; domain: Semantics", "type": "definition"}, {"name": "Components_Quaternion", "description": "dependency of Components.Demo", "type": "definition"}, {"name": "Components_Gradient", "description": "dependency of Components.Demo", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.Demo", "type": "definition"}, {"name": "Components_Pipeline", "description": "dependency of Components.Demo", "type": "definition"}, {"name": "Components_Bind", "description": "dependency of Components.Demo", "type": "definition"}, {"name": "Components_Composition", "description": "dependency of Components.Demo", "type": "definition"}, {"name": "Components_State", "description": "dependency of Components.Demo", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Components_Quaternion", "Components_Gradient", "Components_Core", "Components_Pipeline", "Components_Bind", "Components_Composition", "Components_State"], "summary": "Integration module (Components.Demo) that composes 7 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Gradient.md", "title": "Components.Gradient", "concepts": [{"name": "Components.Gradient", "description": "imports FixedPoint, Components_Core; imported by 3 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Components.Gradient", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.Gradient", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Components_Core", "Components_Bind", "Components_Composition", "Components_Demo"], "summary": "Module (Components.Gradient) in the Semantics domain. Imports 2 module(s), imported by 3 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Pipeline.md", "title": "Components.Pipeline", "concepts": [{"name": "Components.Pipeline", "description": "imports FixedPoint, Components_Core; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Components.Pipeline", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.Pipeline", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Components_Core", "Components_Demo"], "summary": "Module (Components.Pipeline) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Quaternion.md", "title": "Components.Quaternion", "concepts": [{"name": "Components.Quaternion", "description": "imports FixedPoint, Components_Core; imported by 3 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Components.Quaternion", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.Quaternion", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Components_Core", "Components_Bind", "Components_Composition", "Components_Demo"], "summary": "Module (Components.Quaternion) in the Semantics domain. Imports 2 module(s), imported by 3 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_State.md", "title": "Components.State", "concepts": [{"name": "Components.State", "description": "imports FixedPoint, Components_Core; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Components.State", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.State", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Components_Core", "Components_Demo"], "summary": "Module (Components.State) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CompressionControl.md", "title": "CompressionControl", "concepts": [{"name": "CompressionControl", "description": "imports FixedPoint, CompressionMechanicsBridge; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CompressionControl", "type": "definition"}, {"name": "CompressionMechanicsBridge", "description": "dependency of CompressionControl", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "CompressionMechanicsBridge"], "summary": "Module (CompressionControl) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CompressionEvidence.md", "title": "CompressionEvidence", "concepts": [{"name": "CompressionEvidence", "description": "imports FixedPoint, OrthogonalAmmr; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CompressionEvidence", "type": "definition"}, {"name": "OrthogonalAmmr", "description": "dependency of CompressionEvidence", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "OrthogonalAmmr"], "summary": "Module (CompressionEvidence) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CompressionLossComparison.md", "title": "CompressionLossComparison", "concepts": [{"name": "CompressionLossComparison", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CompressionLossComparison", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (CompressionLossComparison) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CompressionMaximization.md", "title": "CompressionMaximization", "concepts": [{"name": "CompressionMaximization", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (CompressionMaximization) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CompressionMechanics.md", "title": "CompressionMechanics", "concepts": [{"name": "CompressionMechanics", "description": "imports FixedPoint, AtomicResolution, EnvironmentMechanics; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CompressionMechanics", "type": "definition"}, {"name": "AtomicResolution", "description": "dependency of CompressionMechanics", "type": "definition"}, {"name": "EnvironmentMechanics", "description": "dependency of CompressionMechanics", "type": "definition"}, {"name": "LandauerCompression", "description": "dependency of CompressionMechanics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "AtomicResolution", "EnvironmentMechanics", "LandauerCompression", "DefectMechanics"], "summary": "Integration module (CompressionMechanics) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CompressionMechanicsBridge.md", "title": "CompressionMechanicsBridge", "concepts": [{"name": "CompressionMechanicsBridge", "description": "imports FixedPoint, DefectMechanics; imported by 1 modules; domain: Semantics", "type": "bridge"}, {"name": "FixedPoint", "description": "dependency of CompressionMechanicsBridge", "type": "definition"}, {"name": "DefectMechanics", "description": "dependency of CompressionMechanicsBridge", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "DefectMechanics", "CompressionControl"], "summary": "Module (CompressionMechanicsBridge) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ComputationProfile.md", "title": "ComputationProfile", "concepts": [{"name": "ComputationProfile", "description": "imports FixedPoint, DynamicCanal; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of ComputationProfile", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of ComputationProfile", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "DynamicCanal", "EquationTranslation"], "summary": "Module (ComputationProfile) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ConflictResolution.md", "title": "ConflictResolution", "concepts": [{"name": "ConflictResolution", "description": "imports GossipFlipMessage, TileStateMachine, TileFlipConsensus; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "GossipFlipMessage", "description": "dependency of ConflictResolution", "type": "definition"}, {"name": "TileStateMachine", "description": "dependency of ConflictResolution", "type": "definition"}, {"name": "TileFlipConsensus", "description": "dependency of ConflictResolution", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GossipFlipMessage", "TileStateMachine", "TileFlipConsensus", "FaultTolerance"], "summary": "Module (ConflictResolution) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Connectors.md", "title": "Connectors", "concepts": [{"name": "Connectors", "description": "imports ManifoldFlow, LandauerCompression, BraidBracket; imported by 2 modules; domain: Semantics", "type": "protocol"}, {"name": "ManifoldFlow", "description": "dependency of Connectors", "type": "definition"}, {"name": "LandauerCompression", "description": "dependency of Connectors", "type": "definition"}, {"name": "BraidBracket", "description": "dependency of Connectors", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of Connectors", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["ManifoldFlow", "LandauerCompression", "BraidBracket", "DynamicCanal", "Decoder", "Testing_SilhouetteTest"], "summary": "Integration module (Connectors) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Constitution.md", "title": "Constitution", "concepts": [{"name": "Constitution", "description": "imports Atoms, Canon, Decomposition; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "Atoms", "description": "dependency of Constitution", "type": "definition"}, {"name": "Canon", "description": "dependency of Constitution", "type": "definition"}, {"name": "Decomposition", "description": "dependency of Constitution", "type": "definition"}, {"name": "Substrate", "description": "dependency of Constitution", "type": "definition"}, {"name": "Projections", "description": "dependency of Constitution", "type": "definition"}, {"name": "Diagnostics", "description": "dependency of Constitution", "type": "definition"}, {"name": "Graph", "description": "dependency of Constitution", "type": "definition"}, {"name": "Evolution", "description": "dependency of Constitution", "type": "definition"}, {"name": "ScalarCollapse", "description": "dependency of Constitution", "type": "definition"}, {"name": "Universality", "description": "dependency of Constitution", "type": "definition"}, {"name": "Witness", "description": "dependency of Constitution", "type": "definition"}, {"name": "Path", "description": "dependency of Constitution", "type": "definition"}, {"name": "Lemmas", "description": "dependency of Constitution", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Atoms", "Canon", "Decomposition", "Substrate", "Projections", "Diagnostics", "Graph", "Evolution", "ScalarCollapse", "Universality", "Witness", "Path", "Lemmas", "KillerCriterion", "Prohibited"], "summary": "Integration module (Constitution) that composes 13 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Containment.md", "title": "Containment", "concepts": [{"name": "Containment", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Containment", "type": "definition"}, {"name": "Bind", "description": "dependency of Containment", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (Containment) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CooperativeLUT.md", "title": "CooperativeLUT", "concepts": [{"name": "CooperativeLUT", "description": "imports Basic, Bind, SSMS; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "Basic", "description": "dependency of CooperativeLUT", "type": "definition"}, {"name": "Bind", "description": "dependency of CooperativeLUT", "type": "definition"}, {"name": "SSMS", "description": "dependency of CooperativeLUT", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Basic", "Bind", "SSMS", "SwarmRGFlow"], "summary": "Module (CooperativeLUT) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CosmicStructure.md", "title": "CosmicStructure", "concepts": [{"name": "CosmicStructure", "description": "imports BoundaryDynamics, MagnetoPlasma, MultiBodyField; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "BoundaryDynamics", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "MagnetoPlasma", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "MultiBodyField", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "ManifoldStructures", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "PhysicsScalar", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "CriticalityDynamics", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "RegimeCore", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "ElectromagneticSpectrum", "description": "dependency of CosmicStructure", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["BoundaryDynamics", "MagnetoPlasma", "MultiBodyField", "ManifoldStructures", "FixedPoint", "PhysicsScalar", "CriticalityDynamics", "RegimeCore", "ElectromagneticSpectrum", "ManifoldPotential"], "summary": "Integration module (CosmicStructure) that composes 9 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CostEffectiveVerification.md", "title": "CostEffectiveVerification", "concepts": [{"name": "CostEffectiveVerification", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (CostEffectiveVerification) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CouchFilterNormalization.md", "title": "CouchFilterNormalization", "concepts": [{"name": "CouchFilterNormalization", "description": "imports AbelianSandpileRouting, Genome18; domain: Semantics", "type": "definition"}, {"name": "AbelianSandpileRouting", "description": "dependency of CouchFilterNormalization", "type": "definition"}, {"name": "Genome18", "description": "dependency of CouchFilterNormalization", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["AbelianSandpileRouting", "Genome18"], "summary": "Module (CouchFilterNormalization) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CoulombComplexity.md", "title": "CoulombComplexity", "concepts": [{"name": "CoulombComplexity", "description": "imports FixedPoint, Bind, SigmaGate; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CoulombComplexity", "type": "definition"}, {"name": "Bind", "description": "dependency of CoulombComplexity", "type": "definition"}, {"name": "SigmaGate", "description": "dependency of CoulombComplexity", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "SigmaGate", "WitnessGrammar"], "summary": "Module (CoulombComplexity) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CriticalityDynamics.md", "title": "CriticalityDynamics", "concepts": [{"name": "CriticalityDynamics", "description": "imports BoundaryDynamics, SpikingDynamics, ExoticSpacetime; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "BoundaryDynamics", "description": "dependency of CriticalityDynamics", "type": "definition"}, {"name": "SpikingDynamics", "description": "dependency of CriticalityDynamics", "type": "definition"}, {"name": "ExoticSpacetime", "description": "dependency of CriticalityDynamics", "type": "definition"}, {"name": "ManifoldStructures", "description": "dependency of CriticalityDynamics", "type": "definition"}, {"name": "PhysicsScalar", "description": "dependency of CriticalityDynamics", "type": "definition"}, {"name": "RegimeCore", "description": "dependency of CriticalityDynamics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["BoundaryDynamics", "SpikingDynamics", "ExoticSpacetime", "ManifoldStructures", "PhysicsScalar", "RegimeCore", "CosmicStructure", "ManifoldPotential"], "summary": "Integration module (CriticalityDynamics) that composes 6 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CrossDimensionalFilter.md", "title": "CrossDimensionalFilter", "concepts": [{"name": "CrossDimensionalFilter", "description": "imports FixedPoint, GeometricTopology; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CrossDimensionalFilter", "type": "definition"}, {"name": "GeometricTopology", "description": "dependency of CrossDimensionalFilter", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "GeometricTopology"], "summary": "Module (CrossDimensionalFilter) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CrossModalCompression.md", "title": "CrossModalCompression", "concepts": [{"name": "CrossModalCompression", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CrossModalCompression", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (CrossModalCompression) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Curvature.md", "title": "Curvature", "concepts": [{"name": "Curvature", "description": "imports FixedPoint, Graph, Bind; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Curvature", "type": "definition"}, {"name": "Graph", "description": "dependency of Curvature", "type": "definition"}, {"name": "Bind", "description": "dependency of Curvature", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Graph", "Bind", "TopologyResilience"], "summary": "Module (Curvature) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DSPTranslation.md", "title": "DSPTranslation", "concepts": [{"name": "DSPTranslation", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DSPTranslation", "type": "definition"}, {"name": "Bind", "description": "dependency of DSPTranslation", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (DSPTranslation) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DecagonZetaCrossing.md", "title": "DecagonZetaCrossing", "concepts": [{"name": "DecagonZetaCrossing", "description": "imports FixedPoint; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DecagonZetaCrossing", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "MassNumberLinter"], "summary": "Module (DecagonZetaCrossing) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Decoder.md", "title": "Decoder", "concepts": [{"name": "Decoder", "description": "imports Connectors, BraidBracket, FixedPoint; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "Connectors", "description": "dependency of Decoder", "type": "definition"}, {"name": "BraidBracket", "description": "dependency of Decoder", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Decoder", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of Decoder", "type": "definition"}, {"name": "SLUG3", "description": "dependency of Decoder", "type": "definition"}], "tags": ["ecology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Connectors", "BraidBracket", "FixedPoint", "DynamicCanal", "SLUG3", "Testing_SilhouetteTest"], "summary": "Integration module (Decoder) that composes 5 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Decomposition.md", "title": "Decomposition", "concepts": [{"name": "Decomposition", "description": "imports Atoms, Lemmas; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "Atoms", "description": "dependency of Decomposition", "type": "definition"}, {"name": "Lemmas", "description": "dependency of Decomposition", "type": "definition"}], "tags": ["ecology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Atoms", "Lemmas", "ScalarCollapse", "Constitution"], "summary": "Module (Decomposition) in the Semantics domain. Imports 2 module(s), imported by 2 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DefectMechanics.md", "title": "DefectMechanics", "concepts": [{"name": "DefectMechanics", "description": "imports FixedPoint, CompressionMechanics; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DefectMechanics", "type": "definition"}, {"name": "CompressionMechanics", "description": "dependency of DefectMechanics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "CompressionMechanics", "CompressionMechanicsBridge"], "summary": "Module (DefectMechanics) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DeltaGCLCompression.md", "title": "DeltaGCLCompression", "concepts": [{"name": "DeltaGCLCompression", "description": "imports FixedPoint, EntropyPhaseEngine; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DeltaGCLCompression", "type": "definition"}, {"name": "EntropyPhaseEngine", "description": "dependency of DeltaGCLCompression", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "EntropyPhaseEngine", "Testing_DeltaGCLBenchmark"], "summary": "Module (DeltaGCLCompression) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Diagnostics.md", "title": "Diagnostics", "concepts": [{"name": "Diagnostics", "description": "imports Path; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "Path", "description": "dependency of Diagnostics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Path", "Constitution"], "summary": "Module (Diagnostics) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DiffusionSNRBias.md", "title": "DiffusionSNRBias", "concepts": [{"name": "DiffusionSNRBias", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (DiffusionSNRBias) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DistributedTraining.md", "title": "DistributedTraining", "concepts": [{"name": "DistributedTraining", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (DistributedTraining) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DlessScalarField.md", "title": "DlessScalarField", "concepts": [{"name": "DlessScalarField", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (DlessScalarField) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DomainKernel.md", "title": "DomainKernel", "concepts": [{"name": "DomainKernel", "description": "imports UniversalCoupling, SSMS_nD; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "UniversalCoupling", "description": "dependency of DomainKernel", "type": "definition"}, {"name": "SSMS_nD", "description": "dependency of DomainKernel", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["UniversalCoupling", "SSMS_nD", "CalibratedKernel"], "summary": "Module (DomainKernel) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DomainModelIntegration.md", "title": "DomainModelIntegration", "concepts": [{"name": "DomainModelIntegration", "description": "imported by 2 modules; domain: Semantics", "type": "algorithm"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["SubagentOrchestrator", "OmnidirectionalInterface"], "summary": "Module (DomainModelIntegration) in the Semantics domain. imported by 2 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DomainRegistryAlignment.md", "title": "DomainRegistryAlignment", "concepts": [{"name": "DomainRegistryAlignment", "description": "domain: Semantics", "type": "tool"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (DomainRegistryAlignment) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DomainState.md", "title": "DomainState", "concepts": [{"name": "DomainState", "description": "imports FixedPoint; imported by 4 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DomainState", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "ManifoldPotential", "SubstrateProfile", "EquationTranslation", "RegimeCore"], "summary": "Module (DomainState) in the Semantics domain. Imports 1 module(s), imported by 4 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DspErasureCoding.md", "title": "DspErasureCoding", "concepts": [{"name": "DspErasureCoding", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DspErasureCoding", "type": "definition"}], "tags": ["ecology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (DspErasureCoding) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DynamicCanal.md", "title": "DynamicCanal", "concepts": [{"name": "DynamicCanal", "description": "imports Tactics, FixedPoint; imported by 21 modules; domain: Semantics", "type": "definition"}, {"name": "Tactics", "description": "dependency of DynamicCanal", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DynamicCanal", "type": "definition"}], "tags": ["hub", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Tactics", "FixedPoint", "MasterEquation", "ManifoldFlow", "BraidStrand", "BraidBracket", "BraidCross", "RotationQUBO", "NetworkRAM", "Quaternion", "BracketShellCount", "Connectors", "TorsionalPIST", "HyperFlow", "CognitiveMorphemics", "Decoder", "ComputationProfile", "LocalExpansion", "Timing", "Physics_NBody", "Physics_StringStarConstants", "Testing_SilhouetteTest", "Testing_TorsionalTest"], "summary": "Core foundational module (DynamicCanal) with high import fanout (21 dependents). Provides fundamental primitives for the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENEApi.md", "title": "ENEApi", "concepts": [{"name": "ENEApi", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ENEApi) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENEContextTokenCache.md", "title": "ENEContextTokenCache", "concepts": [{"name": "ENEContextTokenCache", "description": "imports Bind; domain: Semantics", "type": "definition"}, {"name": "Bind", "description": "dependency of ENEContextTokenCache", "type": "definition"}], "tags": ["ecology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module (ENEContextTokenCache) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENECredentialEnvelope.md", "title": "ENECredentialEnvelope", "concepts": [{"name": "ENECredentialEnvelope", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ENECredentialEnvelope) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENEDistributedNode.md", "title": "ENEDistributedNode", "concepts": [{"name": "ENEDistributedNode", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ENEDistributedNode) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENELayerMetaprobe.md", "title": "ENELayerMetaprobe", "concepts": [{"name": "ENELayerMetaprobe", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ENELayerMetaprobe) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENEMemoryAtlasMetaprobe.md", "title": "ENEMemoryAtlasMetaprobe", "concepts": [{"name": "ENEMemoryAtlasMetaprobe", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of ENEMemoryAtlasMetaprobe", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (ENEMemoryAtlasMetaprobe) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENESecurity.md", "title": "ENESecurity", "concepts": [{"name": "ENESecurity", "description": "imports OTOMOntology; domain: Semantics", "type": "definition"}, {"name": "OTOMOntology", "description": "dependency of ENESecurity", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["OTOMOntology"], "summary": "Module (ENESecurity) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EfficiencyAnalysis.md", "title": "EfficiencyAnalysis", "concepts": [{"name": "EfficiencyAnalysis", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of EfficiencyAnalysis", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (EfficiencyAnalysis) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ElectromagneticSpectrum.md", "title": "ElectromagneticSpectrum", "concepts": [{"name": "ElectromagneticSpectrum", "description": "imported by 9 modules; domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["MultiBodyField", "SensorField", "MagnetoPlasma", "BoundaryDynamics", "CosmicStructure", "ManifoldStructures", "SpikingDynamics", "SubstrateProfile", "RegimeCore"], "summary": "Module (ElectromagneticSpectrum) in the Semantics domain. imported by 9 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ElectronOrbitalConstraint.md", "title": "ElectronOrbitalConstraint", "concepts": [{"name": "ElectronOrbitalConstraint", "description": "imports FixedPoint; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of ElectronOrbitalConstraint", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "HumanNeuralCompression"], "summary": "Module (ElectronOrbitalConstraint) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ElectrostaticsMetaprobe.md", "title": "ElectrostaticsMetaprobe", "concepts": [{"name": "ElectrostaticsMetaprobe", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of ElectrostaticsMetaprobe", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (ElectrostaticsMetaprobe) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EnergyGradientSignal.md", "title": "EnergyGradientSignal", "concepts": [{"name": "EnergyGradientSignal", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (EnergyGradientSignal) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EntropyMeasures.md", "title": "EntropyMeasures", "concepts": [{"name": "EntropyMeasures", "description": "imports Tactics, FixedPoint, OrthogonalAmmr; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "Tactics", "description": "dependency of EntropyMeasures", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of EntropyMeasures", "type": "definition"}, {"name": "OrthogonalAmmr", "description": "dependency of EntropyMeasures", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Tactics", "FixedPoint", "OrthogonalAmmr", "EntropyPhaseEngine", "SigmaGateEntropy"], "summary": "Module (EntropyMeasures) in the Semantics domain. Imports 3 module(s), imported by 2 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EntropyPhaseEngine.md", "title": "EntropyPhaseEngine", "concepts": [{"name": "EntropyPhaseEngine", "description": "imports EntropyMeasures, FixedPoint, QuaternionScalar; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "EntropyMeasures", "description": "dependency of EntropyPhaseEngine", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of EntropyPhaseEngine", "type": "definition"}, {"name": "QuaternionScalar", "description": "dependency of EntropyPhaseEngine", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["EntropyMeasures", "FixedPoint", "QuaternionScalar", "DeltaGCLCompression"], "summary": "Module (EntropyPhaseEngine) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EnvironmentMechanics.md", "title": "EnvironmentMechanics", "concepts": [{"name": "EnvironmentMechanics", "description": "imports FixedPoint, OrthogonalAmmr, LandauerCompression; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of EnvironmentMechanics", "type": "definition"}, {"name": "OrthogonalAmmr", "description": "dependency of EnvironmentMechanics", "type": "definition"}, {"name": "LandauerCompression", "description": "dependency of EnvironmentMechanics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "OrthogonalAmmr", "LandauerCompression", "AtomicResolution", "CompressionMechanics"], "summary": "Module (EnvironmentMechanics) in the Semantics domain. Imports 3 module(s), imported by 2 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EpistemicHonesty.md", "title": "EpistemicHonesty", "concepts": [{"name": "EpistemicHonesty", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (EpistemicHonesty) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EqWorldMetaprobe.md", "title": "EqWorldMetaprobe", "concepts": [{"name": "EqWorldMetaprobe", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (EqWorldMetaprobe) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EquationFractalEncoding.md", "title": "EquationFractalEncoding", "concepts": [{"name": "EquationFractalEncoding", "description": "domain: Semantics", "type": "primitive"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (EquationFractalEncoding) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EquationTranslation.md", "title": "EquationTranslation", "concepts": [{"name": "EquationTranslation", "description": "imports RaycastField, LocalExpansion, LocalDerivative; domain: Semantics", "type": "definition"}, {"name": "RaycastField", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "LocalExpansion", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "LocalDerivative", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "CanonicalInterval", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "ComputationProfile", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "Surface", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "DomainState", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "HyperFlow", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "MetricCore", "description": "dependency of EquationTranslation", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["RaycastField", "LocalExpansion", "LocalDerivative", "CanonicalInterval", "ComputationProfile", "Surface", "DomainState", "HyperFlow", "MetricCore"], "summary": "Integration module (EquationTranslation) that composes 9 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Errors.md", "title": "Errors", "concepts": [{"name": "Errors", "description": "imports OrderedFieldTokens, PhysicsScalar, RegimeCore; imported by 5 modules; domain: Semantics", "type": "definition"}, {"name": "OrderedFieldTokens", "description": "dependency of Errors", "type": "definition"}, {"name": "PhysicsScalar", "description": "dependency of Errors", "type": "definition"}, {"name": "RegimeCore", "description": "dependency of Errors", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["OrderedFieldTokens", "PhysicsScalar", "RegimeCore", "SensorField", "BoundaryDynamics", "ManifoldStructures", "ManifoldPotential", "CausalGeometry"], "summary": "Module (Errors) in the Semantics domain. Imports 3 module(s), imported by 5 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EtaMoE.md", "title": "EtaMoE", "concepts": [{"name": "EtaMoE", "description": "imports SwarmMoERewiring; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "SwarmMoERewiring", "description": "dependency of EtaMoE", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["SwarmMoERewiring"], "summary": "Module (EtaMoE) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EthereumRGFlow.md", "title": "EthereumRGFlow", "concepts": [{"name": "EthereumRGFlow", "description": "imports SSMS; domain: Semantics", "type": "definition"}, {"name": "SSMS", "description": "dependency of EthereumRGFlow", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["SSMS"], "summary": "Module (EthereumRGFlow) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Evolution.md", "title": "Evolution", "concepts": [{"name": "Evolution", "description": "imports Witness, FixedPoint, Canon; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "Witness", "description": "dependency of Evolution", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Evolution", "type": "definition"}, {"name": "Canon", "description": "dependency of Evolution", "type": "definition"}], "tags": ["evolution", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Witness", "FixedPoint", "Canon", "Constitution"], "summary": "Module (Evolution) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ExoticSpacetime.md", "title": "ExoticSpacetime", "concepts": [{"name": "ExoticSpacetime", "description": "imports PhysicsScalar, PhysicsLagrangian, RegimeCore; imported by 6 modules; domain: Semantics", "type": "definition"}, {"name": "PhysicsScalar", "description": "dependency of ExoticSpacetime", "type": "definition"}, {"name": "PhysicsLagrangian", "description": "dependency of ExoticSpacetime", "type": "definition"}, {"name": "RegimeCore", "description": "dependency of ExoticSpacetime", "type": "definition"}, {"name": "PhysicsEuclidean", "description": "dependency of ExoticSpacetime", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["PhysicsScalar", "PhysicsLagrangian", "RegimeCore", "PhysicsEuclidean", "MultiBodyField", "BoundaryDynamics", "ManifoldStructures", "ManifoldPotential", "SpikingDynamics", "CriticalityDynamics"], "summary": "Integration module (ExoticSpacetime) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ExperienceCompression.md", "title": "ExperienceCompression", "concepts": [{"name": "ExperienceCompression", "description": "domain: Semantics", "type": "definition"}], "tags": ["ecology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ExperienceCompression) with no import dependencies. Self-contained implementation in the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_AdvancedBioDynamics.md", "title": "Extensions.AdvancedBioDynamics", "concepts": [{"name": "Extensions.AdvancedBioDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.AdvancedBioDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.AdvancedBioDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.AdvancedBioDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: AdvancedBioDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_AnimalSignalingLaws.md", "title": "Extensions.AnimalSignalingLaws", "concepts": [{"name": "Extensions.AnimalSignalingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.AnimalSignalingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.AnimalSignalingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.AnimalSignalingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: AnimalSignalingLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_AnimalSocialAerodynamics.md", "title": "Extensions.AnimalSocialAerodynamics", "concepts": [{"name": "Extensions.AnimalSocialAerodynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.AnimalSocialAerodynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.AnimalSocialAerodynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.AnimalSocialAerodynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "social-science"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: AnimalSocialAerodynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_AuditoryMaskingDynamics.md", "title": "Extensions.AuditoryMaskingDynamics", "concepts": [{"name": "Extensions.AuditoryMaskingDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.AuditoryMaskingDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.AuditoryMaskingDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.AuditoryMaskingDynamics", "type": "definition"}], "tags": ["acoustics", "biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: AuditoryMaskingDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_AuditoryMechanicsLaws.md", "title": "Extensions.AuditoryMechanicsLaws", "concepts": [{"name": "Extensions.AuditoryMechanicsLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.AuditoryMechanicsLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.AuditoryMechanicsLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.AuditoryMechanicsLaws", "type": "definition"}], "tags": ["acoustics", "biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: AuditoryMechanicsLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_AuditoryPerceptionLaws.md", "title": "Extensions.AuditoryPerceptionLaws", "concepts": [{"name": "Extensions.AuditoryPerceptionLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.AuditoryPerceptionLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.AuditoryPerceptionLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.AuditoryPerceptionLaws", "type": "definition"}], "tags": ["acoustics", "biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: AuditoryPerceptionLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BettiSwoosh.md", "title": "Extensions.BettiSwoosh", "concepts": [{"name": "Extensions.BettiSwoosh", "description": "imports FixedPoint; domain: Semantics", "type": "spec"}, {"name": "FixedPoint", "description": "dependency of Extensions.BettiSwoosh", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Biological/physical dynamics extension module: BettiSwoosh. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BioComplexSystems.md", "title": "Extensions.BioComplexSystems", "concepts": [{"name": "Extensions.BioComplexSystems", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BioComplexSystems", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BioComplexSystems", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BioComplexSystems", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BioComplexSystems. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BioDeepDive.md", "title": "Extensions.BioDeepDive", "concepts": [{"name": "Extensions.BioDeepDive", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BioDeepDive", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BioDeepDive", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BioDeepDive", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BioDeepDive. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BioElectricalImpedanceLaws.md", "title": "Extensions.BioElectricalImpedanceLaws", "concepts": [{"name": "Extensions.BioElectricalImpedanceLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BioElectricalImpedanceLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BioElectricalImpedanceLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BioElectricalImpedanceLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BioElectricalImpedanceLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BioElectroThermodynamics.md", "title": "Extensions.BioElectroThermodynamics", "concepts": [{"name": "Extensions.BioElectroThermodynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BioElectroThermodynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BioElectroThermodynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BioElectroThermodynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "thermodynamics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BioElectroThermodynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BioPhotonicsDynamics.md", "title": "Extensions.BioPhotonicsDynamics", "concepts": [{"name": "Extensions.BioPhotonicsDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BioPhotonicsDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BioPhotonicsDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BioPhotonicsDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "photonics", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BioPhotonicsDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BioThermoTopology.md", "title": "Extensions.BioThermoTopology", "concepts": [{"name": "Extensions.BioThermoTopology", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "architecture"}, {"name": "GeneticCode", "description": "dependency of Extensions.BioThermoTopology", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BioThermoTopology", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BioThermoTopology", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "thermodynamics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BioThermoTopology. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalComputingLaws.md", "title": "Extensions.BiologicalComputingLaws", "concepts": [{"name": "Extensions.BiologicalComputingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalComputingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalComputingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalComputingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalComputingLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalControlDynamics.md", "title": "Extensions.BiologicalControlDynamics", "concepts": [{"name": "Extensions.BiologicalControlDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalControlDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalControlDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalControlDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalControlDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalExergyDynamics.md", "title": "Extensions.BiologicalExergyDynamics", "concepts": [{"name": "Extensions.BiologicalExergyDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalExergyDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalExergyDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalExergyDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalExergyDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalExtremalLaws.md", "title": "Extensions.BiologicalExtremalLaws", "concepts": [{"name": "Extensions.BiologicalExtremalLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalExtremalLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalExtremalLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalExtremalLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalExtremalLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalInformationLaws.md", "title": "Extensions.BiologicalInformationLaws", "concepts": [{"name": "Extensions.BiologicalInformationLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalInformationLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalInformationLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalInformationLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalInformationLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalIntegrityLaws.md", "title": "Extensions.BiologicalIntegrityLaws", "concepts": [{"name": "Extensions.BiologicalIntegrityLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalIntegrityLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalIntegrityLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalIntegrityLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalIntegrityLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalInvariants.md", "title": "Extensions.BiologicalInvariants", "concepts": [{"name": "Extensions.BiologicalInvariants", "description": "domain: Semantics", "type": "spec"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Biological/physical dynamics extension module: BiologicalInvariants. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalRegulationDynamics.md", "title": "Extensions.BiologicalRegulationDynamics", "concepts": [{"name": "Extensions.BiologicalRegulationDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalRegulationDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalRegulationDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalRegulationDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalRegulationDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalRhythmLaws.md", "title": "Extensions.BiologicalRhythmLaws", "concepts": [{"name": "Extensions.BiologicalRhythmLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalRhythmLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalRhythmLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalRhythmLaws", "type": "definition"}], "tags": ["biology", "biophysics", "chronobiology", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalRhythmLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalSensingLaws.md", "title": "Extensions.BiologicalSensingLaws", "concepts": [{"name": "Extensions.BiologicalSensingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalSensingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalSensingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalSensingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalSensingLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalSystemComplexity.md", "title": "Extensions.BiologicalSystemComplexity", "concepts": [{"name": "Extensions.BiologicalSystemComplexity", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalSystemComplexity", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalSystemComplexity", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalSystemComplexity", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalSystemComplexity. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalTransportLaws.md", "title": "Extensions.BiologicalTransportLaws", "concepts": [{"name": "Extensions.BiologicalTransportLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalTransportLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalTransportLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalTransportLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalTransportLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiomolecularFoldingLaws.md", "title": "Extensions.BiomolecularFoldingLaws", "concepts": [{"name": "Extensions.BiomolecularFoldingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiomolecularFoldingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiomolecularFoldingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiomolecularFoldingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "molecular-biology", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiomolecularFoldingLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiophysicalStructuralLaws.md", "title": "Extensions.BiophysicalStructuralLaws", "concepts": [{"name": "Extensions.BiophysicalStructuralLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiophysicalStructuralLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiophysicalStructuralLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiophysicalStructuralLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiophysicalStructuralLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BlitterPolymorphism.md", "title": "Extensions.BlitterPolymorphism", "concepts": [{"name": "Extensions.BlitterPolymorphism", "description": "imports Extensions_ManifoldBlit; domain: Semantics", "type": "spec"}, {"name": "Extensions_ManifoldBlit", "description": "dependency of Extensions.BlitterPolymorphism", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Extensions_ManifoldBlit"], "summary": "Biological/physical dynamics extension module: BlitterPolymorphism. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CancerMetabolicDynamics.md", "title": "Extensions.CancerMetabolicDynamics", "concepts": [{"name": "Extensions.CancerMetabolicDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CancerMetabolicDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CancerMetabolicDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CancerMetabolicDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "oncology", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CancerMetabolicDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CardiacYieldDynamics.md", "title": "Extensions.CardiacYieldDynamics", "concepts": [{"name": "Extensions.CardiacYieldDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CardiacYieldDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CardiacYieldDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CardiacYieldDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "cardiology", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CardiacYieldDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CellularGrowthLaws.md", "title": "Extensions.CellularGrowthLaws", "concepts": [{"name": "Extensions.CellularGrowthLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CellularGrowthLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CellularGrowthLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CellularGrowthLaws", "type": "definition"}], "tags": ["biology", "biophysics", "cell-biology", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CellularGrowthLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CellularMotionLimits.md", "title": "Extensions.CellularMotionLimits", "concepts": [{"name": "Extensions.CellularMotionLimits", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CellularMotionLimits", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CellularMotionLimits", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CellularMotionLimits", "type": "definition"}], "tags": ["biology", "biophysics", "cell-biology", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CellularMotionLimits. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CellularSignalingDynamics.md", "title": "Extensions.CellularSignalingDynamics", "concepts": [{"name": "Extensions.CellularSignalingDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CellularSignalingDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CellularSignalingDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CellularSignalingDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "cell-biology", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CellularSignalingDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CognitiveAcousticDynamics.md", "title": "Extensions.CognitiveAcousticDynamics", "concepts": [{"name": "Extensions.CognitiveAcousticDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CognitiveAcousticDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CognitiveAcousticDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CognitiveAcousticDynamics", "type": "definition"}], "tags": ["acoustics", "biology", "biophysics", "cognitive-science", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CognitiveAcousticDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CognitiveEfficiencyLaws.md", "title": "Extensions.CognitiveEfficiencyLaws", "concepts": [{"name": "Extensions.CognitiveEfficiencyLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CognitiveEfficiencyLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CognitiveEfficiencyLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CognitiveEfficiencyLaws", "type": "definition"}], "tags": ["biology", "biophysics", "cognitive-science", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CognitiveEfficiencyLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CognitiveLearningDynamics.md", "title": "Extensions.CognitiveLearningDynamics", "concepts": [{"name": "Extensions.CognitiveLearningDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CognitiveLearningDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CognitiveLearningDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CognitiveLearningDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "cognitive-science", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CognitiveLearningDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CollectiveBiophysics.md", "title": "Extensions.CollectiveBiophysics", "concepts": [{"name": "Extensions.CollectiveBiophysics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CollectiveBiophysics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CollectiveBiophysics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CollectiveBiophysics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CollectiveBiophysics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_ConstrainedEnergyDynamics.md", "title": "Extensions.ConstrainedEnergyDynamics", "concepts": [{"name": "Extensions.ConstrainedEnergyDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.ConstrainedEnergyDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.ConstrainedEnergyDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.ConstrainedEnergyDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: ConstrainedEnergyDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_ConstructalMuscleDynamics.md", "title": "Extensions.ConstructalMuscleDynamics", "concepts": [{"name": "Extensions.ConstructalMuscleDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.ConstructalMuscleDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.ConstructalMuscleDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.ConstructalMuscleDynamics", "type": "definition"}], "tags": ["biology", "biomechanics", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: ConstructalMuscleDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CorticalScalingDynamics.md", "title": "Extensions.CorticalScalingDynamics", "concepts": [{"name": "Extensions.CorticalScalingDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CorticalScalingDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CorticalScalingDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CorticalScalingDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CorticalScalingDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_DevelopmentalScalingLaws.md", "title": "Extensions.DevelopmentalScalingLaws", "concepts": [{"name": "Extensions.DevelopmentalScalingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.DevelopmentalScalingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.DevelopmentalScalingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.DevelopmentalScalingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: DevelopmentalScalingLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EcologicalBehaviors.md", "title": "Extensions.EcologicalBehaviors", "concepts": [{"name": "Extensions.EcologicalBehaviors", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EcologicalBehaviors", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EcologicalBehaviors", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EcologicalBehaviors", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EcologicalBehaviors. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EcologicalInformationDynamics.md", "title": "Extensions.EcologicalInformationDynamics", "concepts": [{"name": "Extensions.EcologicalInformationDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EcologicalInformationDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EcologicalInformationDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EcologicalInformationDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EcologicalInformationDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EcologicalNetworkDynamics.md", "title": "Extensions.EcologicalNetworkDynamics", "concepts": [{"name": "Extensions.EcologicalNetworkDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EcologicalNetworkDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EcologicalNetworkDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EcologicalNetworkDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EcologicalNetworkDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EcologicalSpecializationLaws.md", "title": "Extensions.EcologicalSpecializationLaws", "concepts": [{"name": "Extensions.EcologicalSpecializationLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EcologicalSpecializationLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EcologicalSpecializationLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EcologicalSpecializationLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EcologicalSpecializationLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EcologyMechanicalLaws.md", "title": "Extensions.EcologyMechanicalLaws", "concepts": [{"name": "Extensions.EcologyMechanicalLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EcologyMechanicalLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EcologyMechanicalLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EcologyMechanicalLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EcologyMechanicalLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EpidemiologicalDynamics.md", "title": "Extensions.EpidemiologicalDynamics", "concepts": [{"name": "Extensions.EpidemiologicalDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EpidemiologicalDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EpidemiologicalDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EpidemiologicalDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "epidemiology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EpidemiologicalDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EpidemiologicalTrophicDynamics.md", "title": "Extensions.EpidemiologicalTrophicDynamics", "concepts": [{"name": "Extensions.EpidemiologicalTrophicDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EpidemiologicalTrophicDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EpidemiologicalTrophicDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EpidemiologicalTrophicDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "epidemiology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EpidemiologicalTrophicDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EvolutionaryLandscapeDynamics.md", "title": "Extensions.EvolutionaryLandscapeDynamics", "concepts": [{"name": "Extensions.EvolutionaryLandscapeDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EvolutionaryLandscapeDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EvolutionaryLandscapeDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EvolutionaryLandscapeDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "evolution", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EvolutionaryLandscapeDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EvolutionaryNetworkDynamics.md", "title": "Extensions.EvolutionaryNetworkDynamics", "concepts": [{"name": "Extensions.EvolutionaryNetworkDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EvolutionaryNetworkDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EvolutionaryNetworkDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EvolutionaryNetworkDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "evolution", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EvolutionaryNetworkDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_FisherGeometricAdaptationLaws.md", "title": "Extensions.FisherGeometricAdaptationLaws", "concepts": [{"name": "Extensions.FisherGeometricAdaptationLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.FisherGeometricAdaptationLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.FisherGeometricAdaptationLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.FisherGeometricAdaptationLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: FisherGeometricAdaptationLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_FoundationalBioLaws.md", "title": "Extensions.FoundationalBioLaws", "concepts": [{"name": "Extensions.FoundationalBioLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.FoundationalBioLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.FoundationalBioLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.FoundationalBioLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: FoundationalBioLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_FractalVascularLaws.md", "title": "Extensions.FractalVascularLaws", "concepts": [{"name": "Extensions.FractalVascularLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.FractalVascularLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.FractalVascularLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.FractalVascularLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: FractalVascularLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_GenomicEvolutionLaws.md", "title": "Extensions.GenomicEvolutionLaws", "concepts": [{"name": "Extensions.GenomicEvolutionLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.GenomicEvolutionLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.GenomicEvolutionLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.GenomicEvolutionLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "evolution", "extensions", "genomics", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: GenomicEvolutionLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_GenomicInformationLaws.md", "title": "Extensions.GenomicInformationLaws", "concepts": [{"name": "Extensions.GenomicInformationLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.GenomicInformationLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.GenomicInformationLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.GenomicInformationLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "genomics", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: GenomicInformationLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_GenomicScalingLaws.md", "title": "Extensions.GenomicScalingLaws", "concepts": [{"name": "Extensions.GenomicScalingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.GenomicScalingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.GenomicScalingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.GenomicScalingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "genomics", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: GenomicScalingLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_GenomicStoichiometricDynamics.md", "title": "Extensions.GenomicStoichiometricDynamics", "concepts": [{"name": "Extensions.GenomicStoichiometricDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.GenomicStoichiometricDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.GenomicStoichiometricDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.GenomicStoichiometricDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "genomics", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: GenomicStoichiometricDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_HarmonicKinkPlasmaManifold.md", "title": "Extensions.HarmonicKinkPlasmaManifold", "concepts": [{"name": "Extensions.HarmonicKinkPlasmaManifold", "description": "imports FixedPoint, FAMM; domain: Semantics", "type": "spec"}, {"name": "FixedPoint", "description": "dependency of Extensions.HarmonicKinkPlasmaManifold", "type": "definition"}, {"name": "FAMM", "description": "dependency of Extensions.HarmonicKinkPlasmaManifold", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "plasma-physics", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "FAMM"], "summary": "Biological/physical dynamics extension module: HarmonicKinkPlasmaManifold. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_HyperbolicStateSurface.md", "title": "Extensions.HyperbolicStateSurface", "concepts": [{"name": "Extensions.HyperbolicStateSurface", "description": "domain: Semantics", "type": "spec"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Biological/physical dynamics extension module: HyperbolicStateSurface. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_LifeHistoryInvariants.md", "title": "Extensions.LifeHistoryInvariants", "concepts": [{"name": "Extensions.LifeHistoryInvariants", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.LifeHistoryInvariants", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.LifeHistoryInvariants", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.LifeHistoryInvariants", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: LifeHistoryInvariants. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_LifeHistoryOptimizationLaws.md", "title": "Extensions.LifeHistoryOptimizationLaws", "concepts": [{"name": "Extensions.LifeHistoryOptimizationLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.LifeHistoryOptimizationLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.LifeHistoryOptimizationLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.LifeHistoryOptimizationLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: LifeHistoryOptimizationLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_LifeHistoryTradeoffLaws.md", "title": "Extensions.LifeHistoryTradeoffLaws", "concepts": [{"name": "Extensions.LifeHistoryTradeoffLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.LifeHistoryTradeoffLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.LifeHistoryTradeoffLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.LifeHistoryTradeoffLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: LifeHistoryTradeoffLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_LocomotionMuscleDynamics.md", "title": "Extensions.LocomotionMuscleDynamics", "concepts": [{"name": "Extensions.LocomotionMuscleDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.LocomotionMuscleDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.LocomotionMuscleDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.LocomotionMuscleDynamics", "type": "definition"}], "tags": ["biology", "biomechanics", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: LocomotionMuscleDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MalthusianHayflickDynamics.md", "title": "Extensions.MalthusianHayflickDynamics", "concepts": [{"name": "Extensions.MalthusianHayflickDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MalthusianHayflickDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MalthusianHayflickDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MalthusianHayflickDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MalthusianHayflickDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_ManifoldBlit.md", "title": "Extensions.ManifoldBlit", "concepts": [{"name": "Extensions.ManifoldBlit", "description": "imports Spectrum; imported by 1 modules; domain: Semantics", "type": "spec"}, {"name": "Spectrum", "description": "dependency of Extensions.ManifoldBlit", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Spectrum", "Extensions_BlitterPolymorphism"], "summary": "Biological/physical dynamics extension module: ManifoldBlit. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MarineMigrationDynamics.md", "title": "Extensions.MarineMigrationDynamics", "concepts": [{"name": "Extensions.MarineMigrationDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MarineMigrationDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MarineMigrationDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MarineMigrationDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "marine-biology", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MarineMigrationDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MarinePlanktonDynamics.md", "title": "Extensions.MarinePlanktonDynamics", "concepts": [{"name": "Extensions.MarinePlanktonDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MarinePlanktonDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MarinePlanktonDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MarinePlanktonDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "marine-biology", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MarinePlanktonDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MasterEquation.md", "title": "Extensions.MasterEquation", "concepts": [{"name": "Extensions.MasterEquation", "description": "imports FixedPoint; domain: Semantics", "type": "spec"}, {"name": "FixedPoint", "description": "dependency of Extensions.MasterEquation", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Biological/physical dynamics extension module: MasterEquation. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MicrobialBiomassDynamics.md", "title": "Extensions.MicrobialBiomassDynamics", "concepts": [{"name": "Extensions.MicrobialBiomassDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MicrobialBiomassDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MicrobialBiomassDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MicrobialBiomassDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MicrobialBiomassDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MolecularBindingThermodynamics.md", "title": "Extensions.MolecularBindingThermodynamics", "concepts": [{"name": "Extensions.MolecularBindingThermodynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MolecularBindingThermodynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MolecularBindingThermodynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MolecularBindingThermodynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "molecular-biology", "semantics", "thermodynamics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MolecularBindingThermodynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MolecularCooperation.md", "title": "Extensions.MolecularCooperation", "concepts": [{"name": "Extensions.MolecularCooperation", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MolecularCooperation", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MolecularCooperation", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MolecularCooperation", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "molecular-biology", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MolecularCooperation. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MorphoKineticLaws.md", "title": "Extensions.MorphoKineticLaws", "concepts": [{"name": "Extensions.MorphoKineticLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MorphoKineticLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MorphoKineticLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MorphoKineticLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "morphogenesis", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MorphoKineticLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MorphogeneticLaws.md", "title": "Extensions.MorphogeneticLaws", "concepts": [{"name": "Extensions.MorphogeneticLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MorphogeneticLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MorphogeneticLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MorphogeneticLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "genomics", "manifold", "module", "morphogenesis", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MorphogeneticLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MorphologicalDynamics.md", "title": "Extensions.MorphologicalDynamics", "concepts": [{"name": "Extensions.MorphologicalDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MorphologicalDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MorphologicalDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MorphologicalDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "morphogenesis", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MorphologicalDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NKCoupling.md", "title": "Extensions.NKCoupling", "concepts": [{"name": "Extensions.NKCoupling", "description": "domain: Semantics", "type": "spec"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Biological/physical dynamics extension module: NKCoupling. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NeuralFieldDynamics.md", "title": "Extensions.NeuralFieldDynamics", "concepts": [{"name": "Extensions.NeuralFieldDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NeuralFieldDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NeuralFieldDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NeuralFieldDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "neuroscience", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NeuralFieldDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NeuralTrophicSwimmingDynamics.md", "title": "Extensions.NeuralTrophicSwimmingDynamics", "concepts": [{"name": "Extensions.NeuralTrophicSwimmingDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NeuralTrophicSwimmingDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NeuralTrophicSwimmingDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NeuralTrophicSwimmingDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "neuroscience", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NeuralTrophicSwimmingDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NeuroEmergentLaws.md", "title": "Extensions.NeuroEmergentLaws", "concepts": [{"name": "Extensions.NeuroEmergentLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NeuroEmergentLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NeuroEmergentLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NeuroEmergentLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "neuroscience", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NeuroEmergentLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NeuroInformationDynamics.md", "title": "Extensions.NeuroInformationDynamics", "concepts": [{"name": "Extensions.NeuroInformationDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NeuroInformationDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NeuroInformationDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NeuroInformationDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "neuroscience", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NeuroInformationDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NicheAgingDynamics.md", "title": "Extensions.NicheAgingDynamics", "concepts": [{"name": "Extensions.NicheAgingDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NicheAgingDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NicheAgingDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NicheAgingDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecological-niche", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NicheAgingDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NicheIonDynamics.md", "title": "Extensions.NicheIonDynamics", "concepts": [{"name": "Extensions.NicheIonDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NicheIonDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NicheIonDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NicheIonDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecological-niche", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NicheIonDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NicheSpecializationDynamics.md", "title": "Extensions.NicheSpecializationDynamics", "concepts": [{"name": "Extensions.NicheSpecializationDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NicheSpecializationDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NicheSpecializationDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NicheSpecializationDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecological-niche", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NicheSpecializationDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NutrientQuotaDynamics.md", "title": "Extensions.NutrientQuotaDynamics", "concepts": [{"name": "Extensions.NutrientQuotaDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NutrientQuotaDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NutrientQuotaDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NutrientQuotaDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "nutrient-cycling", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NutrientQuotaDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_OceanicBiomassScalingLaws.md", "title": "Extensions.OceanicBiomassScalingLaws", "concepts": [{"name": "Extensions.OceanicBiomassScalingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.OceanicBiomassScalingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.OceanicBiomassScalingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.OceanicBiomassScalingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "marine-biology", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: OceanicBiomassScalingLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_PhotosynthesisHydraulicDynamics.md", "title": "Extensions.PhotosynthesisHydraulicDynamics", "concepts": [{"name": "Extensions.PhotosynthesisHydraulicDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.PhotosynthesisHydraulicDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.PhotosynthesisHydraulicDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.PhotosynthesisHydraulicDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: PhotosynthesisHydraulicDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_PhysiologicalInvariants.md", "title": "Extensions.PhysiologicalInvariants", "concepts": [{"name": "Extensions.PhysiologicalInvariants", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.PhysiologicalInvariants", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.PhysiologicalInvariants", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.PhysiologicalInvariants", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: PhysiologicalInvariants. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_PlanetaryNeuroTopology.md", "title": "Extensions.PlanetaryNeuroTopology", "concepts": [{"name": "Extensions.PlanetaryNeuroTopology", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "architecture"}, {"name": "GeneticCode", "description": "dependency of Extensions.PlanetaryNeuroTopology", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.PlanetaryNeuroTopology", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.PlanetaryNeuroTopology", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "neuroscience", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: PlanetaryNeuroTopology. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_PlantHydraulicDynamics.md", "title": "Extensions.PlantHydraulicDynamics", "concepts": [{"name": "Extensions.PlantHydraulicDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.PlantHydraulicDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.PlantHydraulicDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.PlantHydraulicDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "botany", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: PlantHydraulicDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_PlantPhyllotaxisLaws.md", "title": "Extensions.PlantPhyllotaxisLaws", "concepts": [{"name": "Extensions.PlantPhyllotaxisLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.PlantPhyllotaxisLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.PlantPhyllotaxisLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.PlantPhyllotaxisLaws", "type": "definition"}], "tags": ["biology", "biophysics", "botany", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: PlantPhyllotaxisLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_PopulationChaosDynamics.md", "title": "Extensions.PopulationChaosDynamics", "concepts": [{"name": "Extensions.PopulationChaosDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.PopulationChaosDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.PopulationChaosDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.PopulationChaosDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "population-dynamics", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: PopulationChaosDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_QuantumSyntheticBio.md", "title": "Extensions.QuantumSyntheticBio", "concepts": [{"name": "Extensions.QuantumSyntheticBio", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.QuantumSyntheticBio", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.QuantumSyntheticBio", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.QuantumSyntheticBio", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "quantum", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: QuantumSyntheticBio. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_ReliabilityStochasticDynamics.md", "title": "Extensions.ReliabilityStochasticDynamics", "concepts": [{"name": "Extensions.ReliabilityStochasticDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.ReliabilityStochasticDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.ReliabilityStochasticDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.ReliabilityStochasticDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "reliability-engineering", "semantics", "stochastic"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: ReliabilityStochasticDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_ResilienceTippingDynamics.md", "title": "Extensions.ResilienceTippingDynamics", "concepts": [{"name": "Extensions.ResilienceTippingDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.ResilienceTippingDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.ResilienceTippingDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.ResilienceTippingDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "resilience", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: ResilienceTippingDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_RhythmicStructuralDynamics.md", "title": "Extensions.RhythmicStructuralDynamics", "concepts": [{"name": "Extensions.RhythmicStructuralDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.RhythmicStructuralDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.RhythmicStructuralDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.RhythmicStructuralDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "chronobiology", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: RhythmicStructuralDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_RootNutrientDynamics.md", "title": "Extensions.RootNutrientDynamics", "concepts": [{"name": "Extensions.RootNutrientDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.RootNutrientDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.RootNutrientDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.RootNutrientDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "nutrient-cycling", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: RootNutrientDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SleepChronobiologyDynamics.md", "title": "Extensions.SleepChronobiologyDynamics", "concepts": [{"name": "Extensions.SleepChronobiologyDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.SleepChronobiologyDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.SleepChronobiologyDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.SleepChronobiologyDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "chronobiology", "dynamics", "extensions", "manifold", "module", "semantics", "sleep-science"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: SleepChronobiologyDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SocialCognitiveDynamics.md", "title": "Extensions.SocialCognitiveDynamics", "concepts": [{"name": "Extensions.SocialCognitiveDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.SocialCognitiveDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.SocialCognitiveDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.SocialCognitiveDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "cognitive-science", "dynamics", "extensions", "manifold", "module", "semantics", "social-science"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: SocialCognitiveDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SocialMotionVisionDynamics.md", "title": "Extensions.SocialMotionVisionDynamics", "concepts": [{"name": "Extensions.SocialMotionVisionDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.SocialMotionVisionDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.SocialMotionVisionDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.SocialMotionVisionDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "social-science", "vision-science"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: SocialMotionVisionDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SoftTissuePressureDynamics.md", "title": "Extensions.SoftTissuePressureDynamics", "concepts": [{"name": "Extensions.SoftTissuePressureDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.SoftTissuePressureDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.SoftTissuePressureDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.SoftTissuePressureDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "tissue-mechanics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: SoftTissuePressureDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SoilFungalDynamics.md", "title": "Extensions.SoilFungalDynamics", "concepts": [{"name": "Extensions.SoilFungalDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.SoilFungalDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.SoilFungalDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.SoilFungalDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "mycology", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: SoilFungalDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SolitonEngine.md", "title": "Extensions.SolitonEngine", "concepts": [{"name": "Extensions.SolitonEngine", "description": "domain: Semantics", "type": "spec"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "soliton"], "layer": "Documentation", "dependencies": [], "summary": "Biological/physical dynamics extension module: SolitonEngine. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_StoichiometricMetabolicDynamics.md", "title": "Extensions.StoichiometricMetabolicDynamics", "concepts": [{"name": "Extensions.StoichiometricMetabolicDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.StoichiometricMetabolicDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.StoichiometricMetabolicDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.StoichiometricMetabolicDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "oncology", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: StoichiometricMetabolicDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SystemicBioDynamics.md", "title": "Extensions.SystemicBioDynamics", "concepts": [{"name": "Extensions.SystemicBioDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.SystemicBioDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.SystemicBioDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.SystemicBioDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: SystemicBioDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_VisionColorDynamics.md", "title": "Extensions.VisionColorDynamics", "concepts": [{"name": "Extensions.VisionColorDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.VisionColorDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.VisionColorDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.VisionColorDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "vision-science"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: VisionColorDynamics. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_VocalProductionLaws.md", "title": "Extensions.VocalProductionLaws", "concepts": [{"name": "Extensions.VocalProductionLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.VocalProductionLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.VocalProductionLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.VocalProductionLaws", "type": "definition"}], "tags": ["acoustics", "biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: VocalProductionLaws. Defines domain-specific equations and invariants for the Semantics manifold."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ExternalConnectors.md", "title": "ExternalConnectors", "concepts": [{"name": "ExternalConnectors", "description": "imports FixedPoint; domain: Semantics", "type": "protocol"}, {"name": "FixedPoint", "description": "dependency of ExternalConnectors", "type": "definition"}], "tags": ["connectors", "external", "integration", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (ExternalConnectors) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ExtremeParameterTest.md", "title": "ExtremeParameterTest", "concepts": [{"name": "ExtremeParameterTest", "description": "imported by 2 modules; domain: Semantics", "type": "gate"}], "tags": ["extreme", "manifold", "module", "parameters", "semantics", "testing"], "layer": "Documentation", "dependencies": ["Testing_BaselineTest", "Testing_ZKBenchmarkCapsule"], "summary": "Module (ExtremeParameterTest) in the Semantics domain. imported by 2 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FAMM.md", "title": "FAMM", "concepts": [{"name": "FAMM", "description": "imports FixedPoint; imported by 1 modules; domain: Semantics", "type": "architecture"}, {"name": "FixedPoint", "description": "dependency of FAMM", "type": "definition"}], "tags": ["capability", "isolation", "manifold", "memory", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Extensions_HarmonicKinkPlasmaManifold"], "summary": "Module (FAMM) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FNWH_DimensionlessFluxClosure.md", "title": "FNWH.DimensionlessFluxClosure", "concepts": [{"name": "FNWH.DimensionlessFluxClosure", "description": "domain: Semantics", "type": "spec"}], "tags": ["dimensionless", "flux", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Field-theoretic module: DimensionlessFluxClosure. Implements dimensionless flux closure and related physics analogies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FNWH_GinzburgLandauAnalogy.md", "title": "FNWH.GinzburgLandauAnalogy", "concepts": [{"name": "FNWH.GinzburgLandauAnalogy", "description": "domain: Semantics", "type": "spec"}], "tags": ["dimensionless", "flux", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Field-theoretic module: GinzburgLandauAnalogy. Implements dimensionless flux closure and related physics analogies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FaultTolerance.md", "title": "FaultTolerance", "concepts": [{"name": "FaultTolerance", "description": "imports GossipFlipMessage, ConflictResolution, TileFlipConsensus; domain: Semantics", "type": "protocol"}, {"name": "GossipFlipMessage", "description": "dependency of FaultTolerance", "type": "definition"}, {"name": "ConflictResolution", "description": "dependency of FaultTolerance", "type": "definition"}, {"name": "TileFlipConsensus", "description": "dependency of FaultTolerance", "type": "definition"}], "tags": ["consensus", "fault-tolerance", "gossip", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GossipFlipMessage", "ConflictResolution", "TileFlipConsensus"], "summary": "Module (FaultTolerance) in the Semantics domain. Imports 3 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FibonacciEncoding.md", "title": "FibonacciEncoding", "concepts": [{"name": "FibonacciEncoding", "description": "imports FixedPoint; imported by 1 modules; domain: Semantics", "type": "primitive"}, {"name": "FixedPoint", "description": "dependency of FibonacciEncoding", "type": "definition"}], "tags": ["encoding", "fibonacci", "manifold", "module", "semantics", "topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Surface"], "summary": "Module (FibonacciEncoding) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FieldDamping.md", "title": "FieldDamping", "concepts": [{"name": "FieldDamping", "description": "imports FixedPoint, RFPFieldSolver; domain: Semantics", "type": "pattern"}, {"name": "FixedPoint", "description": "dependency of FieldDamping", "type": "definition"}, {"name": "RFPFieldSolver", "description": "dependency of FieldDamping", "type": "definition"}], "tags": ["damping", "field", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "RFPFieldSolver"], "summary": "Module (FieldDamping) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FieldEquationIntegration.md", "title": "FieldEquationIntegration", "concepts": [{"name": "FieldEquationIntegration", "description": "imports RealityContractMassNumber; imported by 1 modules; domain: Semantics", "type": "algorithm"}, {"name": "RealityContractMassNumber", "description": "dependency of FieldEquationIntegration", "type": "definition"}], "tags": ["field-equations", "integration", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": ["RealityContractMassNumber", "ForestAutodocRegistry"], "summary": "Module (FieldEquationIntegration) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FieldSolver.md", "title": "FieldSolver", "concepts": [{"name": "FieldSolver", "description": "imports Atoms, FixedPoint, Bind; domain: Semantics", "type": "algorithm"}, {"name": "Atoms", "description": "dependency of FieldSolver", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of FieldSolver", "type": "definition"}, {"name": "Bind", "description": "dependency of FieldSolver", "type": "definition"}], "tags": ["field", "manifold", "module", "physics", "semantics", "solver"], "layer": "Documentation", "dependencies": ["Atoms", "FixedPoint", "Bind"], "summary": "Module (FieldSolver) in the Semantics domain. Imports 3 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FiveDTorusTopology.md", "title": "FiveDTorusTopology", "concepts": [{"name": "FiveDTorusTopology", "description": "imports FixedPoint; imported by 2 modules; domain: Semantics", "type": "architecture"}, {"name": "FixedPoint", "description": "dependency of FiveDTorusTopology", "type": "definition"}], "tags": ["5d", "manifold", "module", "semantics", "topology", "torus"], "layer": "Documentation", "dependencies": ["FixedPoint", "NetworkedSelfSolvingSpace", "HybridTSMPISTTorus"], "summary": "Module (FiveDTorusTopology) in the Semantics domain. Imports 1 module(s), imported by 2 module(s)."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FixedPoint.md", "title": "FixedPoint", "concepts": [{"name": "FixedPoint", "description": "imported by 348 modules; domain: Semantics", "type": "primitive"}], "tags": ["Q16_16", "arithmetic", "fixed-point", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Bind", "Transition", "MasterEquation", "SpectralField", "UniversalField", "LocalDerivative", "InteratomicPotential", "JouleEnergy", "ResonanceGradient", "FieldDamping", "FieldSolver", "EnvironmentMechanics", "SurfaceCore", "ShellModel", "RFPFieldSolver", "RaycastField", "ScalarEventProjection", "AtomicResolution", "Atoms", "CosmicStructure", "MISignal", "Navigator", "Spectrum", "ThermodynamicSort", "VideoPhysics", "ElectrostaticsMetaprobe", "NICProbe", "NIICore", "USBProbe", "GeometricTopology", "NonEuclideanGeometry", "NNonEuclideanGeometry", "Curvature", "ManifoldNetworking", "TopologyDlessScalar", "TopologyFractalEncoding", "TopologyGoldenSpiral", "TopologyPhinary", "BraidField", "BraidStrand", "BraidCross", "FiveDTorusTopology", "HypercubeTopology", "TriangleManifold", "GoldenAngleEncoding", "FibonacciEncoding", "MengerSpongeFractalAddressing", "TopologicalAwareness", "TopologicalPersistence", "TopologyOptimization", "VoxelEncoding", "Basic", "MetricCore", "FixedPointBridge", "Quantization", "QuantizationMetaprobe", "VecState", "CompressionMechanics", "CompressionMechanicsBridge", "CompressionControl", "CompressionEvidence", "CompressionLossComparison", "HutterMaximumCompression", "HutterPrizeISA", "HutterPrizeRGFlow", "StreamCompression", "CrossModalCompression", "HumanNeuralCompression", "LandauerCompression", "EntropyMeasures", "EntropyPhaseEngine", "DeltaGCLCompression", "QuantumAwareLean", "QuantumManifoldGeometry", "RotationQUBO", "SolitonTensor", "ElectronOrbitalConstraint", "MOFCO2Reduction", "GeneticGroundUp", "GenomicCompression", "OpenWorm", "BrainBoxDescriptor", "Evolution", "HolographicProjection", "HormoneDeriv", "MorphicNeuralNetwork", "Substrate", "MorphicDSP", "MorphicDSPMetaprobe", "MorphicScalar", "MorphicTopologyMetaprobe", "DSPTranslation", "DspErasureCoding", "LeanGPTTSMLayer", "NetworkRAM", "NetworkedSelfSolvingSpace", "SwarmCodeGeneration", "SwarmCompetition", "SwarmDesignReview", "SwarmMoERewiring", "SwarmQueryAPI", "ENEMemoryAtlasMetaprobe", "BitcoinMetaprobe", "BitcoinMetaprobeEval", "MinimalBitcoinL3", "QFactor", "QuaternionScalar", "MNLOGQuaternionBridge", "SLUQQuaternionIntegration", "SLUQTriage", "MassNumberAdapter", "MassNumberLinter", "SabotagePrevention", "Lean4ImprovementProofs", "BindEngine", "ExternalConnectors", "PistBridge", "AgenticCore", "AgenticOrchestrationField", "AgenticTaskAssignment", "AgenticTheorems", "SubagentOrchestrator", "AVMRFrameworkMetaprobe", "AVMR", "BHOCS", "PISTMachine", "TorsionalPIST", "FAMM", "S3CManifoldGeometryMetaprobe", "S3CManifoldMetaprobe", "S3CUnifiedMetaprobe", "SSMS", "SSMS_nD", "OrthogonalAmmr", "HachimojiEquationMetaprobe", "HachimojiPipeline", "DomainState", "CanonAdapters", "CanonSerialization", "CanonicalInterval", "MOIMMetaprobe", "GCLFieldEquationsMetaprobe", "Genus3TopologyMetaprobe", "Layer3Metaprobe", "InfoThermodynamicsMetaprobe", "CasimirMetaprobe", "MS3CNestedReductionGearMetaprobe", "TrophicCascadeMetaprobe", "PistSimulation", "HybridTSMPISTTorus", "Hyperfluid", "HyperFlow", "Adaptation", "Autobalance", "AffineMappingLTSF", "AngrySphinx", "MechanicalLogic", "CellSnowballConstraint", "ChatLogConversion", "CognitiveLoad", "Containment", "CrossDimensionalFilter", "DecagonZetaCrossing", "Decoder", "DefectMechanics", "DynamicCanal", "EfficiencyAnalysis", "FlagSort", "FuzzyAssociation", "ComputationProfile", "HotPathColdPath", "ManyWorldsAddress", "MinimalLayer3Eval", "OEPI", "OmnidirectionalInterface", "OmniNetwork", "SemanticRGFlow", "SIMDBranchPrediction", "SLUG3", "Tape", "TemporalSpatialRAM", "UnifiedSchema", "VirtualWarpMetric", "UnitConversion", "SIConstants", "ASICTopology", "Search", "Canon", "MereotopologicalSheafHypergraph", "YangMillsLattice", "YangMillsCompression", "YangMillsPerformance", "YangMillsLatticeSizing", "YangMillsCompressionBounds", "Layer3TransmissionModel", "SigmaGate", "CoulombComplexity", "NUVMATH", "WitnessGrammar", "S3CResonance", "AVM", "SyntheticGeneticCoding", "GeometricCompressionWorkspace", "HermesAgentIntegration", "Extensions_AdvancedBioDynamics", "Extensions_AnimalSignalingLaws", "Extensions_AnimalSocialAerodynamics", "Extensions_AuditoryMaskingDynamics", "Extensions_AuditoryMechanicsLaws", "Extensions_AuditoryPerceptionLaws", "Extensions_BettiSwoosh", "Extensions_BioComplexSystems", "Extensions_BioDeepDive", "Extensions_BioElectricalImpedanceLaws", "Extensions_BioElectroThermodynamics", "Extensions_BioPhotonicsDynamics", "Extensions_BioThermoTopology", "Extensions_BiologicalComputingLaws", "Extensions_BiologicalControlDynamics", "Extensions_BiologicalExergyDynamics", "Extensions_BiologicalExtremalLaws", "Extensions_BiologicalInformationLaws", "Extensions_BiologicalIntegrityLaws", "Extensions_BiologicalRegulationDynamics", "Extensions_BiologicalRhythmLaws", "Extensions_BiologicalSensingLaws", "Extensions_BiologicalSystemComplexity", "Extensions_BiologicalTransportLaws", "Extensions_BiomolecularFoldingLaws", "Extensions_BiophysicalStructuralLaws", "Extensions_CancerMetabolicDynamics", "Extensions_CardiacYieldDynamics", "Extensions_CellularGrowthLaws", "Extensions_CellularMotionLimits", "Extensions_CellularSignalingDynamics", "Extensions_CognitiveAcousticDynamics", "Extensions_CognitiveEfficiencyLaws", "Extensions_CognitiveLearningDynamics", "Extensions_CollectiveBiophysics", "Extensions_ConstrainedEnergyDynamics", "Extensions_ConstructalMuscleDynamics", "Extensions_CorticalScalingDynamics", "Extensions_DevelopmentalScalingLaws", "Extensions_EcologicalBehaviors", "Extensions_EcologicalInformationDynamics", "Extensions_EcologicalNetworkDynamics", "Extensions_EcologicalSpecializationLaws", "Extensions_EcologyMechanicalLaws", "Extensions_EpidemiologicalDynamics", "Extensions_EpidemiologicalTrophicDynamics", "Extensions_EvolutionaryLandscapeDynamics", "Extensions_EvolutionaryNetworkDynamics", "Extensions_FisherGeometricAdaptationLaws", "Extensions_FoundationalBioLaws", "Extensions_FractalVascularLaws", "Extensions_GenomicEvolutionLaws", "Extensions_GenomicInformationLaws", "Extensions_GenomicScalingLaws", "Extensions_GenomicStoichiometricDynamics", "Extensions_LifeHistoryInvariants", "Extensions_LifeHistoryOptimizationLaws", "Extensions_LifeHistoryTradeoffLaws", "Extensions_LocomotionMuscleDynamics", "Extensions_MalthusianHayflickDynamics", "Extensions_MarineMigrationDynamics", "Extensions_MarinePlanktonDynamics", "Extensions_MasterEquation", "Extensions_MicrobialBiomassDynamics", "Extensions_MolecularBindingThermodynamics", "Extensions_MolecularCooperation", "Extensions_MorphoKineticLaws", "Extensions_MorphogeneticLaws", "Extensions_MorphologicalDynamics", "Extensions_NeuralFieldDynamics", "Extensions_NeuralTrophicSwimmingDynamics", "Extensions_NeuroEmergentLaws", "Extensions_NeuroInformationDynamics", "Extensions_NicheAgingDynamics", "Extensions_NicheIonDynamics", "Extensions_NicheSpecializationDynamics", "Extensions_NutrientQuotaDynamics", "Extensions_OceanicBiomassScalingLaws", "Extensions_PhotosynthesisHydraulicDynamics", "Extensions_PhysiologicalInvariants", "Extensions_PlanetaryNeuroTopology", "Extensions_PlantHydraulicDynamics", "Extensions_PlantPhyllotaxisLaws", "Extensions_PopulationChaosDynamics", "Extensions_QuantumSyntheticBio", "Extensions_ReliabilityStochasticDynamics", "Extensions_ResilienceTippingDynamics", "Extensions_RhythmicStructuralDynamics", "Extensions_RootNutrientDynamics", "Extensions_SleepChronobiologyDynamics", "Extensions_SocialCognitiveDynamics", "Extensions_SocialMotionVisionDynamics", "Extensions_SoftTissuePressureDynamics", "Extensions_SoilFungalDynamics", "Extensions_StoichiometricMetabolicDynamics", "Extensions_SystemicBioDynamics", "Extensions_VisionColorDynamics", "Extensions_VocalProductionLaws", "Extensions_HarmonicKinkPlasmaManifold", "Physics_NBody", "Physics_QCLEnergy", "Physics_StringStarConstants", "Benchmarks_HadwigerNelson", "Hardware_TangNano9K", "Hardware_AdaptiveFabric", "Hardware_AgenticHardware", "Hardware_HardwareExtraction", "Hardware_LaserPathCell", "Geometry_Behavioral", "Geometry_BehavioralBind", "Geometry_Cascade", "Geometry_CascadeBind", "Geometry_CascadeDescent", "Geometry_ImplicitShellLattice", "GenomicCompression_Components", "GenomicCompression_Compression", "GenomicCompression_Field", "GenomicCompression_NonDriftProof", "GenomicCompression_Theorems", "GenomicCompression_Types", "NIICore_SemanticAnalysis", "NIICore_SurfaceDriver", "NIICore_TranslationEngine", "NIICore_Verification", "Orchestrate_TopologyProbe", "Functions_BracketedCalculus", "Functions_MathCoreMetaprobe", "Functions_MathQuery", "Biology_QuaternionGenomic", "Biology_RGFlowBioinformatics", "Testing_DeltaGCLBenchmark", "Testing_ExtremeParameterTest", "Testing_MOIMBenchmark", "Testing_StructuralAttestation", "Components_Bind", "Components_Core", "Components_Gradient", "Components_Pipeline", "Components_Quaternion", "Components_State", "TMMCP_Core", "TMMCP_Compression", "TMMCP_Routing", "TMMCP_Verification"], "summary": "Core foundational module (FixedPoint) with high import fanout (348 dependents). Provides fundamental primitives for the Semantics domain."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FixedPointBridge.md", "title": "FixedPointBridge", "concepts": [{"name": "FixedPointBridge", "description": "imports FixedPoint; domain: Semantics", "type": "bridge"}, {"name": "FixedPoint", "description": "dependency of FixedPointBridge", "type": "definition"}], "tags": ["Q16_16", "arithmetic", "bridge", "fixed-point", "manifold", "migration", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (FixedPointBridge) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FlagSort.md", "title": "FlagSort", "concepts": [{"name": "FlagSort", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "algorithm"}, {"name": "FixedPoint", "description": "dependency of FlagSort", "type": "definition"}, {"name": "Bind", "description": "dependency of FlagSort", "type": "definition"}], "tags": ["algorithm", "manifold", "module", "semantics", "sorting"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (FlagSort) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ForestAutodocRegistry.md", "title": "ForestAutodocRegistry", "concepts": [{"name": "ForestAutodocRegistry", "description": "imports RealityContractMassNumber, FieldEquationIntegration; domain: Semantics", "type": "tool"}, {"name": "RealityContractMassNumber", "description": "dependency of ForestAutodocRegistry", "type": "definition"}, {"name": "FieldEquationIntegration", "description": "dependency of ForestAutodocRegistry", "type": "definition"}], "tags": ["autodoc", "documentation", "manifold", "module", "registry", "semantics"], "layer": "Documentation", "dependencies": ["RealityContractMassNumber", "FieldEquationIntegration"], "summary": "Module (ForestAutodocRegistry) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Forgejo.md", "title": "Forgejo", "concepts": [{"name": "Forgejo", "description": "imports Bind; domain: Semantics", "type": "tool"}, {"name": "Bind", "description": "dependency of Forgejo", "type": "definition"}], "tags": ["devops", "forgejo", "git", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module (Forgejo) in the Semantics domain. Imports 1 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_BracketedCalculus.md", "title": "Functions.BracketedCalculus", "concepts": [{"name": "Functions.BracketedCalculus", "description": "imports FixedPoint; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Functions.BracketedCalculus", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "SolitonTensor", "PBACSSignal"], "summary": "Mathematical function module: BracketedCalculus. Provides formal mathematical definitions and metaprobes for the Semantics framework."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_MathCoreMetaprobe.md", "title": "Functions.MathCoreMetaprobe", "concepts": [{"name": "Functions.MathCoreMetaprobe", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Functions.MathCoreMetaprobe", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Mathematical function module: MathCoreMetaprobe. Provides formal mathematical definitions and metaprobes for the Semantics framework."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_MathDebate.md", "title": "Functions.MathDebate", "concepts": [{"name": "Functions.MathDebate", "description": "domain: Semantics", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Mathematical function module: MathDebate. Provides formal mathematical definitions and metaprobes for the Semantics framework."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_MathQuery.md", "title": "Functions.MathQuery", "concepts": [{"name": "Functions.MathQuery", "description": "imports FixedPoint; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Functions.MathQuery", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "GenomicCompression"], "summary": "Mathematical function module: MathQuery. Provides formal mathematical definitions and metaprobes for the Semantics framework."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_WSM_WR_EGS_WC_Mathlib.md", "title": "Functions.WSM_WR_EGS_WC_Mathlib", "concepts": [{"name": "Functions.WSM_WR_EGS_WC_Mathlib", "description": "domain: Semantics", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Mathematical function module: WSM_WR_EGS_WC_Mathlib. Provides formal mathematical definitions and metaprobes for the Semantics framework."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_WSM_WR_EGS_WC_Mathlib_temp.md", "title": "Functions.WSM_WR_EGS_WC_Mathlib_temp", "concepts": [{"name": "Functions.WSM_WR_EGS_WC_Mathlib_temp", "description": "domain: Semantics", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Mathematical function module: WSM_WR_EGS_WC_Mathlib_temp. Provides formal mathematical definitions and metaprobes for the Semantics framework."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_WavefunctionSuperpositionMetacomputation.md", "title": "Functions.WavefunctionSuperpositionMetacomputation", "concepts": [{"name": "Functions.WavefunctionSuperpositionMetacomputation", "description": "domain: Semantics", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Mathematical function module: WavefunctionSuperpositionMetacomputation. Provides formal mathematical definitions and metaprobes for the Semantics framework."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FuzzyAssociation.md", "title": "FuzzyAssociation", "concepts": [{"name": "FuzzyAssociation", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "pattern"}, {"name": "FixedPoint", "description": "dependency of FuzzyAssociation", "type": "definition"}, {"name": "Bind", "description": "dependency of FuzzyAssociation", "type": "definition"}], "tags": ["association", "fuzzy", "logic", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (FuzzyAssociation) in the Semantics domain. Imports 2 module(s), Not imported by other modules."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GCLFieldEquationsMetaprobe.md", "title": "GCLFieldEquationsMetaprobe", "concepts": [{"name": "GCLFieldEquationsMetaprobe", "description": "Metaprobe module for testing and validation of the GCLFieldEquations subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module GCLFieldEquationsMetaprobe in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GCLTopologyRevision.md", "title": "GCLTopologyRevision", "concepts": [{"name": "GCLTopologyRevision", "description": "Topological definition for GCLTopologyRevision.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics", "topology"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GCLTopologyRevision in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GPUResourceManager.md", "title": "GPUResourceManager", "concepts": [{"name": "GPUResourceManager", "description": "Resource management for GPUResourceManager. Depends on: Bind.", "type": "architecture"}], "tags": ["architecture", "gpu", "manifold", "module", "semantics", "source"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module GPUResourceManager in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GPUVerificationMetaprobe.md", "title": "GPUVerificationMetaprobe", "concepts": [{"name": "GPUVerificationMetaprobe", "description": "Metaprobe module for testing and validation of the GPUVerification subsystem.", "type": "gate"}], "tags": ["gate", "gpu", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GPUVerificationMetaprobe in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GemmaIntegration.md", "title": "GemmaIntegration", "concepts": [{"name": "GemmaIntegration", "description": "Integration module connecting GemmaIntegration to external systems.", "type": "bridge"}], "tags": ["bridge", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GemmaIntegration in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GeneBytecodeJIT.md", "title": "GeneBytecodeJIT", "concepts": [{"name": "GeneBytecodeJIT", "description": "Code generation tool: GeneBytecodeJIT.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GeneBytecodeJIT in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenerateLUT.md", "title": "GenerateLUT", "concepts": [{"name": "GenerateLUT", "description": "Lookup table tool: GenerateLUT. Depends on: Adaptation.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": ["Adaptation"], "summary": "Module GenerateLUT in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GeneticCode.md", "title": "GeneticCode", "concepts": [{"name": "GeneticCode", "description": "Algorithm module for GeneticCode.", "type": "algorithm"}], "tags": ["algorithm", "biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module GeneticCode in the Semantics domain, imported by 101 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GeneticCodeOptimization.md", "title": "GeneticCodeOptimization", "concepts": [{"name": "GeneticCodeOptimization", "description": "Algorithm module for GeneticCodeOptimization.", "type": "algorithm"}], "tags": ["algorithm", "biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GeneticCodeOptimization in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GeneticGroundUp.md", "title": "GeneticGroundUp", "concepts": [{"name": "GeneticGroundUp", "description": "Algorithm module for GeneticGroundUp. Depends on: FixedPoint, QFactor.", "type": "algorithm"}], "tags": ["algorithm", "biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "QFactor"], "summary": "Module GeneticGroundUp in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Genome18.md", "title": "Genome18", "concepts": [{"name": "Genome18", "description": "Algorithm module for Genome18.", "type": "algorithm"}], "tags": ["algorithm", "biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module Genome18 in the Semantics domain, imported by 4 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression.md", "title": "GenomicCompression", "concepts": [{"name": "GenomicCompression", "description": "Compression algorithm module for GenomicCompression. Depends on: GenomicCompression_Components, GenomicCompression_Compression, GenomicCompression_Theorems.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GenomicCompression_Components", "GenomicCompression_Compression", "GenomicCompression_Theorems", "GenomicCompression_NonDriftProof", "FixedPoint", "GenomicCompression_Field", "GenomicCompression_Types", "Functions_MathQuery"], "summary": "Module GenomicCompression in the Semantics domain, imported by 2 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression_Components.md", "title": "GenomicCompression.Components", "concepts": [{"name": "GenomicCompression_Components", "description": "Compression algorithm module for GenomicCompression.Components. Depends on: FixedPoint.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module GenomicCompression.Components in the Semantics domain, imported by 5 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression_Compression.md", "title": "GenomicCompression.Compression", "concepts": [{"name": "GenomicCompression_Compression", "description": "Compression algorithm module for GenomicCompression.Compression. Depends on: FixedPoint, GenomicCompression_Types, GenomicCompression_Field.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "GenomicCompression_Types", "GenomicCompression_Field", "GenomicCompression_Components"], "summary": "Module GenomicCompression.Compression in the Semantics domain, imported by 2 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression_Field.md", "title": "GenomicCompression.Field", "concepts": [{"name": "GenomicCompression_Field", "description": "Compression algorithm module for GenomicCompression.Field. Depends on: FixedPoint, GenomicCompression_Types, GenomicCompression_Components.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "GenomicCompression_Types", "GenomicCompression_Components"], "summary": "Module GenomicCompression.Field in the Semantics domain, imported by 3 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression_NonDriftProof.md", "title": "GenomicCompression.NonDriftProof", "concepts": [{"name": "GenomicCompression_NonDriftProof", "description": "Compression algorithm module for GenomicCompression.NonDriftProof. Depends on: FixedPoint, GenomicCompression_Components.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "GenomicCompression_Components"], "summary": "Module GenomicCompression.NonDriftProof in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression_Theorems.md", "title": "GenomicCompression.Theorems", "concepts": [{"name": "GenomicCompression_Theorems", "description": "Theorem module defining formal proofs for GenomicCompression.Theorems. Depends on: GenomicCompression_Components, GenomicCompression_Compression, FixedPoint.", "type": "theorem"}], "tags": ["compression", "manifold", "module", "semantics", "theorem"], "layer": "Documentation", "dependencies": ["GenomicCompression_Components", "GenomicCompression_Compression", "FixedPoint", "GenomicCompression_Field", "GenomicCompression_Types"], "summary": "Module GenomicCompression.Theorems in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression_Types.md", "title": "GenomicCompression.Types", "concepts": [{"name": "GenomicCompression_Types", "description": "Compression algorithm module for GenomicCompression.Types. Depends on: FixedPoint.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module GenomicCompression.Types in the Semantics domain, imported by 4 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Genus3TopologyMetaprobe.md", "title": "Genus3TopologyMetaprobe", "concepts": [{"name": "Genus3TopologyMetaprobe", "description": "Metaprobe module for testing and validation of the Genus3Topology subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics", "topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Genus3TopologyMetaprobe in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GeometricCompressionWorkspace.md", "title": "GeometricCompressionWorkspace", "concepts": [{"name": "GeometricCompressionWorkspace", "description": "Compression algorithm module for GeometricCompressionWorkspace. Depends on: FixedPoint, ReceiptCore.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "ReceiptCore"], "summary": "Module GeometricCompressionWorkspace in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GeometricTopology.md", "title": "GeometricTopology", "concepts": [{"name": "GeometricTopology", "description": "Topological definition for GeometricTopology. Depends on: FixedPoint, Bind.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics", "topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module GeometricTopology in the Semantics domain, imported by 3 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Geometry_Behavioral.md", "title": "Geometry.Behavioral", "concepts": [{"name": "Geometry_Behavioral", "description": "Geometric definition or structure for Geometry.Behavioral. Depends on: FixedPoint.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Geometry.Behavioral in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Geometry_BehavioralBind.md", "title": "Geometry.BehavioralBind", "concepts": [{"name": "Geometry_BehavioralBind", "description": "Geometric definition or structure for Geometry.BehavioralBind. Depends on: FixedPoint, Geometry_Behavioral.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Geometry_Behavioral"], "summary": "Module Geometry.BehavioralBind in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Geometry_Cascade.md", "title": "Geometry.Cascade", "concepts": [{"name": "Geometry_Cascade", "description": "Geometric definition or structure for Geometry.Cascade. Depends on: FixedPoint.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Geometry.Cascade in the Semantics domain, imported by 2 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Geometry_CascadeBind.md", "title": "Geometry.CascadeBind", "concepts": [{"name": "Geometry_CascadeBind", "description": "Geometric definition or structure for Geometry.CascadeBind. Depends on: FixedPoint, Geometry_CascadeDescent, Geometry_Cascade.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Geometry_CascadeDescent", "Geometry_Cascade"], "summary": "Module Geometry.CascadeBind in the Semantics domain, composing 3 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Geometry_CascadeDescent.md", "title": "Geometry.CascadeDescent", "concepts": [{"name": "Geometry_CascadeDescent", "description": "Geometric definition or structure for Geometry.CascadeDescent. Depends on: FixedPoint, Geometry_Cascade.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Geometry_Cascade"], "summary": "Module Geometry.CascadeDescent in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Geometry_ImplicitShellLattice.md", "title": "Geometry.ImplicitShellLattice", "concepts": [{"name": "Geometry_ImplicitShellLattice", "description": "Geometric definition or structure for Geometry.ImplicitShellLattice. Depends on: FixedPoint, NUVMATH.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "NUVMATH"], "summary": "Module Geometry.ImplicitShellLattice in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Github.md", "title": "Github", "concepts": [{"name": "Github", "description": "GitHub integration tool: Github. Depends on: Bind.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module Github in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GlymphaticPumpConstraint.md", "title": "GlymphaticPumpConstraint", "concepts": [{"name": "GlymphaticPumpConstraint", "description": "Constraint invariant for GlymphaticPumpConstraint.", "type": "invariant"}], "tags": ["invariant", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module GlymphaticPumpConstraint in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GoldenAngleEncoding.md", "title": "GoldenAngleEncoding", "concepts": [{"name": "GoldenAngleEncoding", "description": "Encoding algorithm for GoldenAngleEncoding. Depends on: FixedPoint.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module GoldenAngleEncoding in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GoldenSpiralManifold.md", "title": "GoldenSpiralManifold", "concepts": [{"name": "GoldenSpiralManifold", "description": "Mathematical primitive: GoldenSpiralManifold.", "type": "primitive"}], "tags": ["manifold", "module", "primitive", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GoldenSpiralManifold in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GoldenSpiralNavigation.md", "title": "GoldenSpiralNavigation", "concepts": [{"name": "GoldenSpiralNavigation", "description": "Navigation algorithm for GoldenSpiralNavigation.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GoldenSpiralNavigation in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GossipFlipMessage.md", "title": "GossipFlipMessage", "concepts": [{"name": "GossipFlipMessage", "description": "Message protocol for GossipFlipMessage.", "type": "protocol"}], "tags": ["manifold", "module", "protocol", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module GossipFlipMessage in the Semantics domain, imported by 3 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GpuDutyAssignment.md", "title": "GpuDutyAssignment", "concepts": [{"name": "GpuDutyAssignment", "description": "GPU resource architecture: GpuDutyAssignment.", "type": "architecture"}], "tags": ["architecture", "gpu", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module GpuDutyAssignment in the Semantics domain, imported by 3 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GradientPathMap.md", "title": "GradientPathMap", "concepts": [{"name": "GradientPathMap", "description": "Gradient path mapping: GradientPathMap.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GradientPathMap in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Graph.md", "title": "Graph", "concepts": [{"name": "Graph", "description": "Graph structure: Graph. Depends on: Atoms, Projections, Lemmas.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Atoms", "Projections", "Lemmas"], "summary": "Module Graph in the Semantics domain, imported by 3 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HachimojiCostRefinement.md", "title": "HachimojiCostRefinement", "concepts": [{"name": "HachimojiCostRefinement", "description": "Hachimoji pipeline: HachimojiCostRefinement.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module HachimojiCostRefinement in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HachimojiEquationMetaprobe.md", "title": "HachimojiEquationMetaprobe", "concepts": [{"name": "HachimojiEquationMetaprobe", "description": "Metaprobe module for testing and validation of the HachimojiEquation subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module HachimojiEquationMetaprobe in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HachimojiPipeline.md", "title": "HachimojiPipeline", "concepts": [{"name": "HachimojiPipeline", "description": "Hachimoji pipeline: HachimojiPipeline. Depends on: FixedPoint, Hardware_AdaptiveFabric, Timing.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Hardware_AdaptiveFabric", "Timing", "SwarmDesignReview"], "summary": "Module HachimojiPipeline in the Semantics domain, composing 4 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HamiltonianFormal.md", "title": "HamiltonianFormal", "concepts": [{"name": "HamiltonianFormal", "description": "Hamiltonian formalism: HamiltonianFormal. Depends on: AnalysisFoundations.", "type": "definition"}], "tags": ["definition", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": ["AnalysisFoundations"], "summary": "Module HamiltonianFormal in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HamiltonianVerification.md", "title": "HamiltonianVerification", "concepts": [{"name": "HamiltonianVerification", "description": "Verification module for HamiltonianVerification proofs and checks. Depends on: HamiltonianFormal.", "type": "gate"}], "tags": ["gate", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": ["HamiltonianFormal"], "summary": "Module HamiltonianVerification in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_AdaptiveFabric.md", "title": "Hardware.AdaptiveFabric", "concepts": [{"name": "Hardware_AdaptiveFabric", "description": "Architecture module defining Hardware.AdaptiveFabric structure and layout. Depends on: FixedPoint.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Hardware.AdaptiveFabric in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_AgenticHardware.md", "title": "Hardware.AgenticHardware", "concepts": [{"name": "Hardware_AgenticHardware", "description": "Architecture module defining Hardware.AgenticHardware structure and layout. Depends on: FixedPoint.", "type": "architecture"}], "tags": ["agent", "architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Hardware.AgenticHardware in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_Blitter6502OISC.md", "title": "Hardware.Blitter6502OISC", "concepts": [{"name": "Hardware_Blitter6502OISC", "description": "Architecture module defining Hardware.Blitter6502OISC structure and layout.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module Hardware.Blitter6502OISC in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_CBFHardwareMetaprobe.md", "title": "Hardware.CBFHardwareMetaprobe", "concepts": [{"name": "Hardware_CBFHardwareMetaprobe", "description": "Metaprobe module for testing and validation of the Hardware CBFHardware subsystem.", "type": "gate"}], "tags": ["gate", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module Hardware.CBFHardwareMetaprobe in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_HardwareExtraction.md", "title": "Hardware.HardwareExtraction", "concepts": [{"name": "Hardware_HardwareExtraction", "description": "Architecture module defining Hardware.HardwareExtraction structure and layout. Depends on: FixedPoint.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Hardware.HardwareExtraction in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_LaserPathCell.md", "title": "Hardware.LaserPathCell", "concepts": [{"name": "Hardware_LaserPathCell", "description": "Architecture module defining Hardware.LaserPathCell structure and layout. Depends on: FixedPoint, Geometry_ImplicitShellLattice.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Geometry_ImplicitShellLattice"], "summary": "Module Hardware.LaserPathCell in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_TangNano9K.md", "title": "Hardware.TangNano9K", "concepts": [{"name": "Hardware_TangNano9K", "description": "Architecture module defining Hardware.TangNano9K structure and layout. Depends on: FixedPoint, Genome18.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Genome18"], "summary": "Module Hardware.TangNano9K in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_TangNano9K_BitstreamWitness.md", "title": "Hardware.TangNano9K.BitstreamWitness", "concepts": [{"name": "Hardware_TangNano9K_BitstreamWitness", "description": "Architecture module defining Hardware.TangNano9K.BitstreamWitness structure and layout. Depends on: Hardware_TangNano9K.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Hardware_TangNano9K"], "summary": "Module Hardware.TangNano9K.BitstreamWitness in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_TangNano9K_NIICore.md", "title": "Hardware.TangNano9K.NIICore", "concepts": [{"name": "Hardware_TangNano9K_NIICore", "description": "Architecture module defining Hardware.TangNano9K.NIICore structure and layout.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module Hardware.TangNano9K.NIICore in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_TangNano9K_RGFlowFAMM.md", "title": "Hardware.TangNano9K.RGFlowFAMM", "concepts": [{"name": "Hardware_TangNano9K_RGFlowFAMM", "description": "Architecture module defining Hardware.TangNano9K.RGFlowFAMM structure and layout.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module Hardware.TangNano9K.RGFlowFAMM in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HermesAgentIntegration.md", "title": "HermesAgentIntegration", "concepts": [{"name": "HermesAgentIntegration", "description": "Integration module connecting HermesAgentIntegration to external systems. Depends on: ReceiptCore, FixedPoint.", "type": "bridge"}], "tags": ["agent", "bridge", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["ReceiptCore", "FixedPoint"], "summary": "Module HermesAgentIntegration in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HolographicProjection.md", "title": "HolographicProjection", "concepts": [{"name": "HolographicProjection", "description": "Graph structure: HolographicProjection. Depends on: FixedPoint.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module HolographicProjection in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HormoneDeriv.md", "title": "HormoneDeriv", "concepts": [{"name": "HormoneDeriv", "description": "Hormone derivative primitive: HormoneDeriv. Depends on: FixedPoint, Bind.", "type": "primitive"}], "tags": ["manifold", "module", "primitive", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module HormoneDeriv in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HotPathColdPath.md", "title": "HotPathColdPath", "concepts": [{"name": "HotPathColdPath", "description": "Hot/cold path optimization pattern: HotPathColdPath. Depends on: FixedPoint.", "type": "pattern"}], "tags": ["manifold", "module", "pattern", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module HotPathColdPath in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HumanNeuralCompression.md", "title": "HumanNeuralCompression", "concepts": [{"name": "HumanNeuralCompression", "description": "Compression algorithm module for HumanNeuralCompression. Depends on: OpenWorm, ElectronOrbitalConstraint, CellSnowballConstraint.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "neural", "semantics"], "layer": "Documentation", "dependencies": ["OpenWorm", "ElectronOrbitalConstraint", "CellSnowballConstraint", "StreamCompression", "FixedPoint", "GlymphaticPumpConstraint", "TopologicalPersistence"], "summary": "Module HumanNeuralCompression in the Semantics domain, composing 7 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HumanNeuralCompressionVerification.md", "title": "HumanNeuralCompressionVerification", "concepts": [{"name": "HumanNeuralCompressionVerification", "description": "Verification module for HumanNeuralCompressionVerification proofs and checks.", "type": "gate"}], "tags": ["compression", "gate", "manifold", "module", "neural", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module HumanNeuralCompressionVerification in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hutter.md", "title": "Hutter", "concepts": [{"name": "Hutter", "description": "Hutter Prize compression module: Hutter. Depends on: Bind.", "type": "algorithm"}], "tags": ["algorithm", "hutter-prize", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module Hutter in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HutterMaximumCompression.md", "title": "HutterMaximumCompression", "concepts": [{"name": "HutterMaximumCompression", "description": "Compression algorithm module for HutterMaximumCompression. Depends on: AVMR, Hutter, FixedPoint.", "type": "algorithm"}], "tags": ["algorithm", "compression", "hutter-prize", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["AVMR", "Hutter", "FixedPoint", "Genome18", "HutterPrizeRGFlow", "Bind"], "summary": "Module HutterMaximumCompression in the Semantics domain, composing 6 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HutterPrizeCompression.md", "title": "HutterPrizeCompression", "concepts": [{"name": "HutterPrizeCompression", "description": "Compression algorithm module for HutterPrizeCompression. Depends on: MassNumberAdapter, GpuDutyAssignment.", "type": "algorithm"}], "tags": ["algorithm", "compression", "hutter-prize", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["MassNumberAdapter", "GpuDutyAssignment"], "summary": "Module HutterPrizeCompression in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HutterPrizeFlow.md", "title": "HutterPrizeFlow", "concepts": [{"name": "HutterPrizeFlow", "description": "Flow pattern module defining data/control paths for HutterPrizeFlow.", "type": "pattern"}], "tags": ["hutter-prize", "manifold", "module", "pattern", "semantics", "sink"], "layer": "Documentation", "dependencies": [], "summary": "Module HutterPrizeFlow in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HutterPrizeISA.md", "title": "HutterPrizeISA", "concepts": [{"name": "HutterPrizeISA", "description": "Hutter Prize compression module: HutterPrizeISA. Depends on: FixedPoint, Timing, SwarmDesignReview.", "type": "algorithm"}], "tags": ["algorithm", "hutter-prize", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Timing", "SwarmDesignReview"], "summary": "Module HutterPrizeISA in the Semantics domain, composing 3 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HutterPrizeRGFlow.md", "title": "HutterPrizeRGFlow", "concepts": [{"name": "HutterPrizeRGFlow", "description": "Flow pattern module defining data/control paths for HutterPrizeRGFlow. Depends on: FixedPoint, Biology_RGFlowBioinformatics.", "type": "pattern"}], "tags": ["hutter-prize", "manifold", "module", "pattern", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Biology_RGFlowBioinformatics"], "summary": "Module HutterPrizeRGFlow in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HybridConvergence.md", "title": "HybridConvergence", "concepts": [{"name": "HybridConvergence", "description": "Code generation tool: HybridConvergence.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module HybridConvergence in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HybridTSMPISTTorus.md", "title": "HybridTSMPISTTorus", "concepts": [{"name": "HybridTSMPISTTorus", "description": "Hybrid convergence architecture: HybridTSMPISTTorus. Depends on: ManifoldFlow, PistBridge, FixedPoint.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["ManifoldFlow", "PistBridge", "FixedPoint", "VirtualWarpMetric", "MasterEquation", "FiveDTorusTopology"], "summary": "Module HybridTSMPISTTorus in the Semantics domain, composing 6 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HydrogenicPhiTorsionBraid.md", "title": "HydrogenicPhiTorsionBraid", "concepts": [{"name": "HydrogenicPhiTorsionBraid", "description": "Code generation tool: HydrogenicPhiTorsionBraid. Depends on: Bind.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module HydrogenicPhiTorsionBraid in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HyperFlow.md", "title": "HyperFlow", "concepts": [{"name": "HyperFlow", "description": "Flow pattern module defining data/control paths for HyperFlow. Depends on: LocalDerivative, FixedPoint, DynamicCanal.", "type": "pattern"}], "tags": ["manifold", "module", "pattern", "semantics"], "layer": "Documentation", "dependencies": ["LocalDerivative", "FixedPoint", "DynamicCanal", "MetricCore"], "summary": "Module HyperFlow in the Semantics domain, imported by 2 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HyperbolicEncoding.md", "title": "HyperbolicEncoding", "concepts": [{"name": "HyperbolicEncoding", "description": "Encoding algorithm for HyperbolicEncoding.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module HyperbolicEncoding in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HypercubeTopology.md", "title": "HypercubeTopology", "concepts": [{"name": "HypercubeTopology", "description": "Topological definition for HypercubeTopology. Depends on: FixedPoint.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics", "topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module HypercubeTopology in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hyperfluid.md", "title": "Hyperfluid", "concepts": [{"name": "Hyperfluid", "description": "Hyperstructure definition: Hyperfluid. Depends on: FixedPoint, UnifiedSchema.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "UnifiedSchema"], "summary": "Module Hyperfluid in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/InfoThermodynamicsMetaprobe.md", "title": "InfoThermodynamicsMetaprobe", "concepts": [{"name": "InfoThermodynamicsMetaprobe", "description": "Metaprobe module for testing and validation of the InfoThermodynamics subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module InfoThermodynamicsMetaprobe in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/InformationConservation.md", "title": "InformationConservation", "concepts": [{"name": "InformationConservation", "description": "Information conservation invariant: InformationConservation.", "type": "invariant"}], "tags": ["invariant", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module InformationConservation in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Ingestion.md", "title": "Ingestion", "concepts": [{"name": "Ingestion", "description": "Ingestion recipe: Ingestion. Depends on: Adaptation.", "type": "recipe"}], "tags": ["manifold", "module", "recipe", "semantics"], "layer": "Documentation", "dependencies": ["Adaptation"], "summary": "Module Ingestion in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/InteratomicPotential.md", "title": "InteratomicPotential", "concepts": [{"name": "InteratomicPotential", "description": "Potential definition: InteratomicPotential. Depends on: FixedPoint, Bind.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module InteratomicPotential in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/IntrinsicGeometry.md", "title": "IntrinsicGeometry", "concepts": [{"name": "IntrinsicGeometry", "description": "Geometric definition or structure for IntrinsicGeometry.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module IntrinsicGeometry in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/JouleEnergy.md", "title": "JouleEnergy", "concepts": [{"name": "JouleEnergy", "description": "Energy definition: JouleEnergy. Depends on: FixedPoint.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module JouleEnergy in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/JsonLSurfaceConnector.md", "title": "JsonLSurfaceConnector", "concepts": [{"name": "JsonLSurfaceConnector", "description": "JSON surface connector: JsonLSurfaceConnector. Depends on: Bind.", "type": "bridge"}], "tags": ["bridge", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module JsonLSurfaceConnector in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/KillerCriterion.md", "title": "KillerCriterion", "concepts": [{"name": "KillerCriterion", "description": "Killer criterion gate: KillerCriterion. Depends on: KimiProber, Adaptation, Security.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["KimiProber", "Adaptation", "Security", "Constitution"], "summary": "Module KillerCriterion in the Semantics domain, composing 4 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/KimiProber.md", "title": "KimiProber", "concepts": [{"name": "KimiProber", "description": "Probe module for inspecting KimiProber state. Depends on: Waveprobe, Adaptation, AVMR.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Waveprobe", "Adaptation", "AVMR"], "summary": "Module KimiProber in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/LandauerCompression.md", "title": "LandauerCompression", "concepts": [{"name": "LandauerCompression", "description": "Compression algorithm module for LandauerCompression. Depends on: FixedPoint, OrthogonalAmmr.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "OrthogonalAmmr"], "summary": "Module LandauerCompression in the Semantics domain, imported by 4 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/LaviGen.md", "title": "LaviGen", "concepts": [{"name": "LaviGen", "description": "LaviGen tool: LaviGen.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module LaviGen in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Layer3Metaprobe.md", "title": "Layer3Metaprobe", "concepts": [{"name": "Layer3Metaprobe", "description": "Metaprobe module for testing and validation of the Layer3 subsystem. Depends on: FixedPoint, Bind, BitcoinMetaprobe.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "BitcoinMetaprobe"], "summary": "Module Layer3Metaprobe in the Semantics domain, composing 3 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Layer3TransmissionModel.md", "title": "Layer3TransmissionModel", "concepts": [{"name": "Layer3TransmissionModel", "description": "Layer architecture: Layer3TransmissionModel. Depends on: FixedPoint, Bind.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module Layer3TransmissionModel in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Lean4ImprovementProofs.md", "title": "Lean4ImprovementProofs", "concepts": [{"name": "Lean4ImprovementProofs", "description": "Lean integration module: Lean4ImprovementProofs. Depends on: FixedPoint.", "type": "bridge"}], "tags": ["bridge", "lean", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Lean4ImprovementProofs in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/LeanBridge.md", "title": "LeanBridge", "concepts": [{"name": "LeanBridge", "description": "Bridge module connecting LeanBridge to other subsystems.", "type": "bridge"}], "tags": ["bridge", "lean", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module LeanBridge in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/LeanGPTTSMLayer.md", "title": "LeanGPTTSMLayer", "concepts": [{"name": "LeanGPTTSMLayer", "description": "Lean integration module: LeanGPTTSMLayer. Depends on: Selfies, FixedPoint, Smiles.", "type": "bridge"}], "tags": ["bridge", "lean", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Selfies", "FixedPoint", "Smiles"], "summary": "Module LeanGPTTSMLayer in the Semantics domain, composing 3 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Lemmas.md", "title": "Lemmas", "concepts": [{"name": "Lemmas", "description": "Lemma module: Lemmas. Depends on: Atoms.", "type": "theorem"}], "tags": ["manifold", "module", "semantics", "theorem"], "layer": "Documentation", "dependencies": ["Atoms"], "summary": "Module Lemmas in the Semantics domain, imported by 3 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/LocalDerivative.md", "title": "LocalDerivative", "concepts": [{"name": "LocalDerivative", "description": "Local derivative primitive: LocalDerivative. Depends on: FixedPoint.", "type": "primitive"}], "tags": ["manifold", "module", "primitive", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module LocalDerivative in the Semantics domain, imported by 9 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/LocalExpansion.md", "title": "LocalExpansion", "concepts": [{"name": "LocalExpansion", "description": "Local expansion algorithm: LocalExpansion. Depends on: LocalDerivative, DynamicCanal.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["LocalDerivative", "DynamicCanal"], "summary": "Module LocalExpansion in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MISignal.md", "title": "MISignal", "concepts": [{"name": "MISignal", "description": "Signal primitive for MISignal. Depends on: FixedPoint, Bind.", "type": "primitive"}], "tags": ["manifold", "module", "primitive", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module MISignal in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MNLOGQuaternionBridge.md", "title": "MNLOGQuaternionBridge", "concepts": [{"name": "MNLOGQuaternionBridge", "description": "Bridge module connecting MNLOGQuaternionBridge to other subsystems. Depends on: FixedPoint, Bind, MassNumberLinter.", "type": "bridge"}], "tags": ["bridge", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "MassNumberLinter"], "summary": "Module MNLOGQuaternionBridge in the Semantics domain, composing 3 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MOFCO2Reduction.md", "title": "MOFCO2Reduction", "concepts": [{"name": "MOFCO2Reduction", "description": "Reduction algorithm: MOFCO2Reduction. Depends on: FixedPoint.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MOFCO2Reduction in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MOIMMetaprobe.md", "title": "MOIMMetaprobe", "concepts": [{"name": "MOIMMetaprobe", "description": "Metaprobe module for testing and validation of the MOIM subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MOIMMetaprobe in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MS3CNestedReductionGearMetaprobe.md", "title": "MS3CNestedReductionGearMetaprobe", "concepts": [{"name": "MS3CNestedReductionGearMetaprobe", "description": "Metaprobe module for testing and validation of the MS3CNestedReductionGear subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MS3CNestedReductionGearMetaprobe in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MagnetoPlasma.md", "title": "MagnetoPlasma", "concepts": [{"name": "MagnetoPlasma", "description": "Plasma physics definition: MagnetoPlasma. Depends on: LocalDerivative, OrderedFieldTokens, PhysicsLagrangian.", "type": "definition"}], "tags": ["definition", "hub", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": ["LocalDerivative", "OrderedFieldTokens", "PhysicsLagrangian", "PhysicsEuclidean", "PhysicsScalar", "HyperFlow", "ElectromagneticSpectrum", "RegimeCore"], "summary": "Module MagnetoPlasma in the Semantics domain, imported by 4 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ManifoldFlow.md", "title": "ManifoldFlow", "concepts": [{"name": "ManifoldFlow", "description": "Flow pattern module defining data/control paths for ManifoldFlow. Depends on: BraidBracket, DynamicCanal.", "type": "pattern"}], "tags": ["manifold", "module", "pattern", "semantics"], "layer": "Documentation", "dependencies": ["BraidBracket", "DynamicCanal"], "summary": "Module ManifoldFlow in the Semantics domain, imported by 4 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ManifoldNetworking.md", "title": "ManifoldNetworking", "concepts": [{"name": "ManifoldNetworking", "description": "Manifold structure definition: ManifoldNetworking. Depends on: FixedPoint, Bind.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module ManifoldNetworking in the Semantics domain, imported by 6 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ManifoldPotential.md", "title": "ManifoldPotential", "concepts": [{"name": "ManifoldPotential", "description": "Manifold structure definition: ManifoldPotential. Depends on: BoundaryDynamics, MultiBodyField, ManifoldStructures.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["BoundaryDynamics", "MultiBodyField", "ManifoldStructures", "ExoticSpacetime", "PhysicsScalar", "CriticalityDynamics", "DomainState", "CosmicStructure", "Errors", "RegimeCore"], "summary": "Module ManifoldPotential in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ManifoldStructures.md", "title": "ManifoldStructures", "concepts": [{"name": "ManifoldStructures", "description": "Manifold structure definition: ManifoldStructures. Depends on: MagnetoPlasma, SpikingDynamics, ExoticSpacetime.", "type": "definition"}], "tags": ["definition", "hub", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["MagnetoPlasma", "SpikingDynamics", "ExoticSpacetime", "PhysicsScalar", "RegimeCore", "Errors", "ElectromagneticSpectrum"], "summary": "Module ManifoldStructures in the Semantics domain, imported by 7 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ManifoldTopology.md", "title": "ManifoldTopology", "concepts": [{"name": "ManifoldTopology", "description": "Topological definition for ManifoldTopology.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics", "topology"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module ManifoldTopology in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ManyWorldsAddress.md", "title": "ManyWorldsAddress", "concepts": [{"name": "ManyWorldsAddress", "description": "Module definition: ManyWorldsAddress. Depends on: GeometricTopology, FixedPoint.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeometricTopology", "FixedPoint"], "summary": "Module ManyWorldsAddress in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MassNumberAdapter.md", "title": "MassNumberAdapter", "concepts": [{"name": "MassNumberAdapter", "description": "Adapter module for MassNumberAdapter interface compatibility. Depends on: FixedPoint.", "type": "bridge"}], "tags": ["bridge", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MassNumberAdapter in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MassNumberLinter.md", "title": "MassNumberLinter", "concepts": [{"name": "MassNumberLinter", "description": "Linter tool for validating MassNumberLinter constraints. Depends on: DecagonZetaCrossing, FixedPoint.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": ["DecagonZetaCrossing", "FixedPoint"], "summary": "Module MassNumberLinter in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MassNumberMetricClosure.md", "title": "MassNumberMetricClosure", "concepts": [{"name": "MassNumberMetricClosure", "description": "Metric definition: MassNumberMetricClosure. Depends on: RealityContractMassNumber.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["RealityContractMassNumber"], "summary": "Module MassNumberMetricClosure in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MasterEquation.md", "title": "MasterEquation", "concepts": [{"name": "MasterEquation", "description": "Master equation definition: MasterEquation. Depends on: ManifoldFlow, BraidStrand, BraidBracket.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["ManifoldFlow", "BraidStrand", "BraidBracket", "FixedPoint", "VirtualWarpMetric", "DynamicCanal"], "summary": "Module MasterEquation in the Semantics domain, imported by 2 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MechanicalLogic.md", "title": "MechanicalLogic", "concepts": [{"name": "MechanicalLogic", "description": "Mechanical logic primitive: MechanicalLogic. Depends on: FixedPoint, Bind.", "type": "primitive"}], "tags": ["manifold", "module", "primitive", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module MechanicalLogic in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MengerSpongeFractalAddressing.md", "title": "MengerSpongeFractalAddressing", "concepts": [{"name": "MengerSpongeFractalAddressing", "description": "Fractal addressing algorithm: MengerSpongeFractalAddressing. Depends on: FixedPoint, PistBridge.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "PistBridge"], "summary": "Module MengerSpongeFractalAddressing in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MereotopologicalSheafHypergraph.md", "title": "MereotopologicalSheafHypergraph", "concepts": [{"name": "MereotopologicalSheafHypergraph", "description": "Hyperstructure definition: MereotopologicalSheafHypergraph. Depends on: FixedPoint.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MereotopologicalSheafHypergraph in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MereotopologicalVideo.md", "title": "MereotopologicalVideo", "concepts": [{"name": "MereotopologicalVideo", "description": "Video processing architecture: MereotopologicalVideo. Depends on: VideoPhysics, MereotopologicalSheafHypergraph.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["VideoPhysics", "MereotopologicalSheafHypergraph"], "summary": "Module MereotopologicalVideo in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MetadataSurfaceComputation.md", "title": "MetadataSurfaceComputation", "concepts": [{"name": "MetadataSurfaceComputation", "description": "Metadata surface computation: MetadataSurfaceComputation.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics", "sink"], "layer": "Documentation", "dependencies": [], "summary": "Module MetadataSurfaceComputation in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Metatype.md", "title": "Metatype", "concepts": [{"name": "Metatype", "description": "Metatype definition: Metatype.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module Metatype in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MetricCore.md", "title": "MetricCore", "concepts": [{"name": "MetricCore", "description": "Core architecture module for MetricCore. Depends on: FixedPoint.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MetricCore in the Semantics domain, imported by 4 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MinimalBitcoinL3.md", "title": "MinimalBitcoinL3", "concepts": [{"name": "MinimalBitcoinL3", "description": "Bitcoin L3 architecture: MinimalBitcoinL3. Depends on: FixedPoint, Bind, BitcoinMetaprobe.", "type": "architecture"}], "tags": ["architecture", "bitcoin", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "BitcoinMetaprobe"], "summary": "Module MinimalBitcoinL3 in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MinimalLayer3Eval.md", "title": "MinimalLayer3Eval", "concepts": [{"name": "MinimalLayer3Eval", "description": "Layer architecture: MinimalLayer3Eval. Depends on: FixedPoint, Bind, MinimalBitcoinL3.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "MinimalBitcoinL3"], "summary": "Module MinimalLayer3Eval in the Semantics domain, composing 3 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MoECache.md", "title": "MoECache", "concepts": [{"name": "MoECache", "description": "Caching architecture for MoECache.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module MoECache in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MorphicDSP.md", "title": "MorphicDSP", "concepts": [{"name": "MorphicDSP", "description": "Morphic field definition: MorphicDSP. Depends on: MorphicScalar, FixedPoint, OEPI.", "type": "definition"}], "tags": ["definition", "manifold", "module", "morphic", "semantics"], "layer": "Documentation", "dependencies": ["MorphicScalar", "FixedPoint", "OEPI"], "summary": "Module MorphicDSP in the Semantics domain, composing 3 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MorphicDSPMetaprobe.md", "title": "MorphicDSPMetaprobe", "concepts": [{"name": "MorphicDSPMetaprobe", "description": "Metaprobe module for testing and validation of the MorphicDSP subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "morphic", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MorphicDSPMetaprobe in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MorphicLocalField.md", "title": "MorphicLocalField", "concepts": [{"name": "MorphicLocalField", "description": "Field definition for MorphicLocalField.", "type": "definition"}], "tags": ["definition", "manifold", "module", "morphic", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module MorphicLocalField in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MorphicNeuralNetwork.md", "title": "MorphicNeuralNetwork", "concepts": [{"name": "MorphicNeuralNetwork", "description": "Neural architecture module: MorphicNeuralNetwork. Depends on: FixedPoint, Bind.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "morphic", "neural", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module MorphicNeuralNetwork in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MorphicScalar.md", "title": "MorphicScalar", "concepts": [{"name": "MorphicScalar", "description": "Morphic field definition: MorphicScalar. Depends on: FixedPoint, Bind.", "type": "definition"}], "tags": ["definition", "manifold", "module", "morphic", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module MorphicScalar in the Semantics domain, imported by 2 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MorphicTopologyMetaprobe.md", "title": "MorphicTopologyMetaprobe", "concepts": [{"name": "MorphicTopologyMetaprobe", "description": "Metaprobe module for testing and validation of the MorphicTopology subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "morphic", "semantics", "topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MorphicTopologyMetaprobe in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MultiBodyField.md", "title": "MultiBodyField", "concepts": [{"name": "MultiBodyField", "description": "Field definition for MultiBodyField. Depends on: BoundaryDynamics, MagnetoPlasma, SpikingDynamics.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["BoundaryDynamics", "MagnetoPlasma", "SpikingDynamics", "ExoticSpacetime", "PhysicsScalar", "ElectromagneticSpectrum", "RegimeCore"], "summary": "Module MultiBodyField in the Semantics domain, imported by 2 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NGemetry.md", "title": "NGemetry", "concepts": [{"name": "NGemetry", "description": "Module definition: NGemetry.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NGemetry in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NICProbe.md", "title": "NICProbe", "concepts": [{"name": "NICProbe", "description": "Probe module for inspecting NICProbe state. Depends on: FixedPoint, Bind, ASICTopology.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "ASICTopology"], "summary": "Module NICProbe in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore.md", "title": "NIICore", "concepts": [{"name": "NIICore", "description": "Core architecture module for NIICore. Depends on: FixedPoint, Timing, SwarmDesignReview.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Timing", "SwarmDesignReview"], "summary": "Module NIICore in the Semantics domain, imported by 4 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_CognitiveLoadIntegration.md", "title": "NIICore.CognitiveLoadIntegration", "concepts": [{"name": "NIICore_CognitiveLoadIntegration", "description": "Integration module connecting NIICore.CognitiveLoadIntegration to external systems.", "type": "bridge"}], "tags": ["bridge", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NIICore.CognitiveLoadIntegration in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_DifferentialAttentionMorphing.md", "title": "NIICore.DifferentialAttentionMorphing", "concepts": [{"name": "NIICore_DifferentialAttentionMorphing", "description": "Core architecture module for NIICore.DifferentialAttentionMorphing.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics", "sink"], "layer": "Documentation", "dependencies": [], "summary": "Module NIICore.DifferentialAttentionMorphing in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_HierarchicalController.md", "title": "NIICore.HierarchicalController", "concepts": [{"name": "NIICore_HierarchicalController", "description": "Core architecture module for NIICore.HierarchicalController.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module NIICore.HierarchicalController in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_MereotopologicalSheafHypergraph.md", "title": "NIICore.MereotopologicalSheafHypergraph", "concepts": [{"name": "NIICore_MereotopologicalSheafHypergraph", "description": "Core architecture module for NIICore.MereotopologicalSheafHypergraph. Depends on: NIICore_MorphicFieldCategory.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["NIICore_MorphicFieldCategory"], "summary": "Module NIICore.MereotopologicalSheafHypergraph in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_MetaLearning.md", "title": "NIICore.MetaLearning", "concepts": [{"name": "NIICore_MetaLearning", "description": "Core architecture module for NIICore.MetaLearning.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module NIICore.MetaLearning in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_MorphicCoreId.md", "title": "NIICore.MorphicCoreId", "concepts": [{"name": "NIICore_MorphicCoreId", "description": "Core architecture module for NIICore.MorphicCoreId.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "morphic", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NIICore.MorphicCoreId in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_MorphicFieldCategory.md", "title": "NIICore.MorphicFieldCategory", "concepts": [{"name": "NIICore_MorphicFieldCategory", "description": "Field definition for NIICore.MorphicFieldCategory.", "type": "definition"}], "tags": ["definition", "manifold", "module", "morphic", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module NIICore.MorphicFieldCategory in the Semantics domain, imported by 2 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_MorphingTests.md", "title": "NIICore.MorphingTests", "concepts": [{"name": "NIICore_MorphingTests", "description": "Core architecture module for NIICore.MorphingTests.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics", "testing"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NIICore.MorphingTests in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_MorphingTriggers.md", "title": "NIICore.MorphingTriggers", "concepts": [{"name": "NIICore_MorphingTriggers", "description": "Core architecture module for NIICore.MorphingTriggers.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NIICore.MorphingTriggers in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_PredictiveResourceAllocation.md", "title": "NIICore.PredictiveResourceAllocation", "concepts": [{"name": "NIICore_PredictiveResourceAllocation", "description": "Core architecture module for NIICore.PredictiveResourceAllocation.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics", "sink"], "layer": "Documentation", "dependencies": [], "summary": "Module NIICore.PredictiveResourceAllocation in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_SemanticAnalysis.md", "title": "NIICore.SemanticAnalysis", "concepts": [{"name": "NIICore_SemanticAnalysis", "description": "Core architecture module for NIICore.SemanticAnalysis. Depends on: FixedPoint, NIICore, SwarmDesignReview.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantic", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "NIICore", "SwarmDesignReview"], "summary": "Module NIICore.SemanticAnalysis in the Semantics domain, imported by 2 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_SemanticCapabilitySystem.md", "title": "NIICore.SemanticCapabilitySystem", "concepts": [{"name": "NIICore_SemanticCapabilitySystem", "description": "Core architecture module for NIICore.SemanticCapabilitySystem.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantic", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NIICore.SemanticCapabilitySystem in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_SemanticRGFlow.md", "title": "NIICore.SemanticRGFlow", "concepts": [{"name": "NIICore_SemanticRGFlow", "description": "Flow pattern module defining data/control paths for NIICore.SemanticRGFlow. Depends on: NIICore_SheafPersistentRGHybrid.", "type": "pattern"}], "tags": ["manifold", "module", "nii-core", "pattern", "semantic", "semantics"], "layer": "Documentation", "dependencies": ["NIICore_SheafPersistentRGHybrid"], "summary": "Module NIICore.SemanticRGFlow in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_SemanticStateMorphism.md", "title": "NIICore.SemanticStateMorphism", "concepts": [{"name": "NIICore_SemanticStateMorphism", "description": "Core architecture module for NIICore.SemanticStateMorphism.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantic", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NIICore.SemanticStateMorphism in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_SheafPersistentRGHybrid.md", "title": "NIICore.SheafPersistentRGHybrid", "concepts": [{"name": "NIICore_SheafPersistentRGHybrid", "description": "Core architecture module for NIICore.SheafPersistentRGHybrid. Depends on: NIICore_HierarchicalController, NIICore_MorphicFieldCategory.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["NIICore_HierarchicalController", "NIICore_MorphicFieldCategory"], "summary": "Module NIICore.SheafPersistentRGHybrid in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_SurfaceDriver.md", "title": "NIICore.SurfaceDriver", "concepts": [{"name": "NIICore_SurfaceDriver", "description": "Core architecture module for NIICore.SurfaceDriver. Depends on: FixedPoint, Timing, NIICore.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Timing", "NIICore", "SwarmDesignReview"], "summary": "Module NIICore.SurfaceDriver in the Semantics domain, composing 4 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_TranslationEngine.md", "title": "NIICore.TranslationEngine", "concepts": [{"name": "NIICore_TranslationEngine", "description": "Core architecture module for NIICore.TranslationEngine. Depends on: FixedPoint, NIICore_SemanticAnalysis, NIICore.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "NIICore_SemanticAnalysis", "NIICore", "SwarmDesignReview"], "summary": "Module NIICore.TranslationEngine in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_UncertaintyMetaPredictiveDifferential.md", "title": "NIICore.UncertaintyMetaPredictiveDifferential", "concepts": [{"name": "NIICore_UncertaintyMetaPredictiveDifferential", "description": "Core architecture module for NIICore.UncertaintyMetaPredictiveDifferential. Depends on: NIICore_MetaLearning, NIICore_PredictiveResourceAllocation, NIICore_DifferentialAttentionMorphing.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["NIICore_MetaLearning", "NIICore_PredictiveResourceAllocation", "NIICore_DifferentialAttentionMorphing", "NIICore_UncertaintyQuantification"], "summary": "Module NIICore.UncertaintyMetaPredictiveDifferential in the Semantics domain, composing 4 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_UncertaintyQuantification.md", "title": "NIICore.UncertaintyQuantification", "concepts": [{"name": "NIICore_UncertaintyQuantification", "description": "Core architecture module for NIICore.UncertaintyQuantification.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics", "sink"], "layer": "Documentation", "dependencies": [], "summary": "Module NIICore.UncertaintyQuantification in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_Verification.md", "title": "NIICore.Verification", "concepts": [{"name": "NIICore_Verification", "description": "Verification module for NIICore.Verification proofs and checks. Depends on: NIICore_SemanticAnalysis, NIICore_TranslationEngine, FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["NIICore_SemanticAnalysis", "NIICore_TranslationEngine", "FixedPoint", "NIICore", "SwarmDesignReview"], "summary": "Module NIICore.Verification in the Semantics domain, composing 5 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NNonEuclideanGeometry.md", "title": "NNonEuclideanGeometry", "concepts": [{"name": "NNonEuclideanGeometry", "description": "Geometric definition or structure for NNonEuclideanGeometry. Depends on: FixedPoint, Bind.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module NNonEuclideanGeometry in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NUVMATH.md", "title": "NUVMATH", "concepts": [{"name": "NUVMATH", "description": "NUVMATH computation tool: NUVMATH. Depends on: FixedPoint, S3C.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": ["FixedPoint", "S3C"], "summary": "Module NUVMATH in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Navigator.md", "title": "Navigator", "concepts": [{"name": "Navigator", "description": "Navigation algorithm for Navigator. Depends on: FixedPoint, UnifiedSchema.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "UnifiedSchema"], "summary": "Module Navigator in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NeighborCoupling.md", "title": "NeighborCoupling", "concepts": [{"name": "NeighborCoupling", "description": "Coupling primitive: NeighborCoupling. Depends on: RFPFieldSolver.", "type": "primitive"}], "tags": ["manifold", "module", "primitive", "semantics"], "layer": "Documentation", "dependencies": ["RFPFieldSolver"], "summary": "Module NeighborCoupling in the Semantics domain, composing 1 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NetworkCapacity.md", "title": "NetworkCapacity", "concepts": [{"name": "NetworkCapacity", "description": "Network architecture: NetworkCapacity.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NetworkCapacity in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NetworkRAM.md", "title": "NetworkRAM", "concepts": [{"name": "NetworkRAM", "description": "RAM/memory architecture: NetworkRAM. Depends on: Quaternion, FixedPoint, DynamicCanal.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Quaternion", "FixedPoint", "DynamicCanal", "TorsionalPIST", "Adaptation"], "summary": "Module NetworkRAM in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NetworkedSelfSolvingSpace.md", "title": "NetworkedSelfSolvingSpace", "concepts": [{"name": "NetworkedSelfSolvingSpace", "description": "Network architecture: NetworkedSelfSolvingSpace. Depends on: MengerSpongeFractalAddressing, FixedPoint, FiveDTorusTopology.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["MengerSpongeFractalAddressing", "FixedPoint", "FiveDTorusTopology", "PistBridge"], "summary": "Module NetworkedSelfSolvingSpace in the Semantics domain, composing 4 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NeurodivergentPatternLUT.md", "title": "NeurodivergentPatternLUT", "concepts": [{"name": "NeurodivergentPatternLUT", "description": "Lookup table tool: NeurodivergentPatternLUT.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": [], "summary": "Module NeurodivergentPatternLUT in the Semantics domain, imported by 1 downstream consumers."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NextGenAgentDesign.md", "title": "NextGenAgentDesign", "concepts": [{"name": "NextGenAgentDesign", "description": "Agent architecture for NextGenAgentDesign.", "type": "architecture"}], "tags": ["agent", "architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NextGenAgentDesign in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NonEuclideanGeometry.md", "title": "NonEuclideanGeometry", "concepts": [{"name": "NonEuclideanGeometry", "description": "Geometric definition or structure for NonEuclideanGeometry. Depends on: FixedPoint, Bind.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module NonEuclideanGeometry in the Semantics domain, composing 2 upstream dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NonStandardInterfaces.md", "title": "NonStandardInterfaces", "concepts": [{"name": "NonStandardInterfaces", "description": "Non-standard interface: NonStandardInterfaces.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NonStandardInterfaces in the Semantics domain with no import dependencies."}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/OEPI.md", "title": "OEPI", "concepts": [{"name": "OEPI", "description": "Module: OEPI", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in OEPI", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "MorphicDSP", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/OmnidirectionalInterface.md", "title": "OmnidirectionalInterface", "concepts": [{"name": "OmnidirectionalInterface", "description": "Module: OmnidirectionalInterface", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "spec"}, {"name": "Imports", "description": "Section: Imports", "type": "spec"}, {"name": "Imported by", "description": "Section: Imported by", "type": "spec"}, {"name": "Tags", "description": "Section: Tags", "type": "spec"}, {"name": "Semantics", "description": "Identifier in OmnidirectionalInterface", "type": "primitive"}], "tags": ["topology", "hardware", "swarm"], "layer": "Documentation", "dependencies": ["FixedPoint", "SwarmQueryAPI", "DomainModelIntegration", "RcloneIntegration", "GpuDutyAssignment", "SubagentOrchestrator"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/OmniNetwork.md", "title": "OmniNetwork", "concepts": [{"name": "OmniNetwork", "description": "Module: OmniNetwork", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in OmniNetwork", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Autobalance", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/OpenWorm.md", "title": "OpenWorm", "concepts": [{"name": "OpenWorm", "description": "Module: OpenWorm", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in OpenWorm", "type": "primitive"}], "tags": ["topology", "compression"], "layer": "Documentation", "dependencies": ["FixedPoint", "HumanNeuralCompression", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Orchestrate_BasinEscape.md", "title": "Orchestrate.BasinEscape", "concepts": [{"name": "Orchestrate.BasinEscape", "description": "Module: Orchestrate.BasinEscape", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Orchestrate.BasinEscape", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["PBACSSignal"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Orchestrate_CredentialSurface.md", "title": "Orchestrate.CredentialSurface", "concepts": [{"name": "Orchestrate.CredentialSurface", "description": "Module: Orchestrate.CredentialSurface", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Orchestrate.CredentialSurface", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Orchestrate_SigmaDeploy", "PBACSSignal"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Orchestrate.md", "title": "Orchestrate", "concepts": [{"name": "Orchestrate", "description": "Module: Orchestrate", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Orchestrate", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Pbacs", "Canon", "TriumvirateEnforcer"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Orchestrate_SigmaDeploy.md", "title": "Orchestrate.SigmaDeploy", "concepts": [{"name": "Orchestrate.SigmaDeploy", "description": "Module: Orchestrate.SigmaDeploy", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Orchestrate.SigmaDeploy", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": ["PBACSVerilogEquivalence", "Orchestrate_CredentialSurface", "PBACSSignal"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Orchestrate_TopologyProbe.md", "title": "Orchestrate.TopologyProbe", "concepts": [{"name": "Orchestrate.TopologyProbe", "description": "Module: Orchestrate.TopologyProbe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in Orchestrate.TopologyProbe", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": ["TopologyOptimization", "SubstrateProfile", "FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/OrderedFieldTokens.md", "title": "OrderedFieldTokens", "concepts": [{"name": "OrderedFieldTokens", "description": "Module: OrderedFieldTokens", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in OrderedFieldTokens", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["Errors", "MagnetoPlasma"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/OrthogonalAmmr.md", "title": "OrthogonalAmmr", "concepts": [{"name": "OrthogonalAmmr", "description": "Module: OrthogonalAmmr", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in OrthogonalAmmr", "type": "primitive"}], "tags": ["topology", "compression"], "layer": "Documentation", "dependencies": ["FixedPoint", "EntropyMeasures", "LandauerCompression", "CompressionEvidence", "BHOCS", "AtomicResolution", "EnvironmentMechanics"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/OTOMOntology.md", "title": "OTOMOntology", "concepts": [{"name": "OTOMOntology", "description": "Module: OTOMOntology", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in OTOMOntology", "type": "primitive"}], "tags": ["topology", "security"], "layer": "Documentation", "dependencies": ["ENESecurity"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PassiveComputation.md", "title": "PassiveComputation", "concepts": [{"name": "PassiveComputation", "description": "Module: PassiveComputation", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PassiveComputation", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Surface"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Path.md", "title": "Path", "concepts": [{"name": "Path", "description": "Module: Path", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Path", "type": "primitive"}], "tags": ["topology", "receipt"], "layer": "Documentation", "dependencies": ["Diagnostics", "Graph", "Witness", "Constitution"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Pbacs.md", "title": "Pbacs", "concepts": [{"name": "Pbacs", "description": "Module: Pbacs", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Pbacs", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Canon", "Orchestrate"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PBACSSignal.md", "title": "PBACSSignal", "concepts": [{"name": "PBACSSignal", "description": "Module: PBACSSignal", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PBACSSignal", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": ["Orchestrate_SigmaDeploy", "Functions_BracketedCalculus", "PISTMachine", "PBACSVerilogEquivalence", "Orchestrate_CredentialSurface", "Orchestrate_BasinEscape"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PBACSVerilogEquivalence.md", "title": "PBACSVerilogEquivalence", "concepts": [{"name": "PBACSVerilogEquivalence", "description": "Module: PBACSVerilogEquivalence", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PBACSVerilogEquivalence", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": ["Orchestrate_SigmaDeploy", "PBACSSignal"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PeptideMoEExamples.md", "title": "PeptideMoEExamples", "concepts": [{"name": "PeptideMoEExamples", "description": "Module: PeptideMoEExamples", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PeptideMoEExamples", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["PeptideMoEFailure", "PeptideMoERepair", "PeptideMoE"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PeptideMoEFailure.md", "title": "PeptideMoEFailure", "concepts": [{"name": "PeptideMoEFailure", "description": "Module: PeptideMoEFailure", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PeptideMoEFailure", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["PeptideMoERepair", "PeptideMoEExamples", "PeptideMoE"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PeptideMoE.md", "title": "PeptideMoE", "concepts": [{"name": "PeptideMoE", "description": "Module: PeptideMoE", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PeptideMoE", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["PeptideMoEFailure", "CodonPeptideConsistency", "PeptideMoERepair", "PeptideMoEExamples"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PeptideMoERepair.md", "title": "PeptideMoERepair", "concepts": [{"name": "PeptideMoERepair", "description": "Module: PeptideMoERepair", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PeptideMoERepair", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["PeptideMoEFailure", "PeptideMoEExamples", "PeptideMoE"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PhinaryNumberSystem.md", "title": "PhinaryNumberSystem", "concepts": [{"name": "PhinaryNumberSystem", "description": "Module: PhinaryNumberSystem", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in PhinaryNumberSystem", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PhiShellEncoding.md", "title": "PhiShellEncoding", "concepts": [{"name": "PhiShellEncoding", "description": "Module: PhiShellEncoding", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in PhiShellEncoding", "type": "primitive"}], "tags": ["topology", "compression", "gcl"], "layer": "Documentation", "dependencies": ["Surface"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PhiUniversalMetaprobe.md", "title": "PhiUniversalMetaprobe", "concepts": [{"name": "PhiUniversalMetaprobe", "description": "Module: PhiUniversalMetaprobe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PhiUniversalMetaprobe", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Physics_BindPhysics.md", "title": "Physics.BindPhysics", "concepts": [{"name": "Physics.BindPhysics", "description": "Module: Physics.BindPhysics", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Physics.BindPhysics", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["Physics_Examples", "Physics_Boundary", "Bind", "Physics_Conservation", "Physics"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Physics_Boundary.md", "title": "Physics.Boundary", "concepts": [{"name": "Physics.Boundary", "description": "Module: Physics.Boundary", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Physics.Boundary", "type": "primitive"}], "tags": ["topology", "physics", "testing"], "layer": "Documentation", "dependencies": ["Physics_Examples", "Physics_Tests", "Physics_Interaction", "Physics_Projection", "Physics_Conservation", "Physics", "Physics_BindPhysics", "Physics_ParticleDomain"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Physics_Conservation.md", "title": "Physics.Conservation", "concepts": [{"name": "Physics.Conservation", "description": "Module: Physics.Conservation", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Physics.Conservation", "type": "primitive"}], "tags": ["topology", "physics", "testing"], "layer": "Documentation", "dependencies": ["Physics_QCLEnergy", "Physics_Boundary", "Physics_Interaction", "Physics_Tests", "Physics", "Physics_BindPhysics"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PhysicsEuclidean.md", "title": "PhysicsEuclidean", "concepts": [{"name": "PhysicsEuclidean", "description": "Module: PhysicsEuclidean", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PhysicsEuclidean", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["PhysicsLagrangian", "PhysicsScalar", "SpikingDynamics", "ExoticSpacetime", "MagnetoPlasma", "SensorField"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Physics_Examples.md", "title": "Physics.Examples", "concepts": [{"name": "Physics.Examples", "description": "Module: Physics.Examples", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Physics.Examples", "type": "primitive"}], "tags": ["topology", "physics", "testing"], "layer": "Documentation", "dependencies": ["Physics_BindPhysics", "Physics", "Physics_Tests", "Physics_Boundary"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Physics_Interaction.md", "title": "Physics.Interaction", "concepts": [{"name": "Physics.Interaction", "description": "Module: Physics.Interaction", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Physics.Interaction", "type": "primitive"}], "tags": ["topology", "physics", "testing"], "layer": "Documentation", "dependencies": ["Physics_Boundary", "Physics", "Physics_Tests", "Physics_Conservation"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PhysicsLagrangian.md", "title": "PhysicsLagrangian", "concepts": [{"name": "PhysicsLagrangian", "description": "Module: PhysicsLagrangian", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PhysicsLagrangian", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["PhysicsEuclidean", "SpikingDynamics", "ExoticSpacetime", "MagnetoPlasma"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Physics.md", "title": "Physics", "concepts": [{"name": "Physics", "description": "Module: Physics", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Physics", "type": "primitive"}], "tags": ["topology", "physics", "testing"], "layer": "Documentation", "dependencies": ["Physics_Examples", "Physics_Tests", "Physics_Projection", "Physics_Interaction", "Physics_Boundary", "Physics_Conservation", "Physics_BindPhysics", "Physics_ParticleDomain"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Physics_NBody.md", "title": "Physics.NBody", "concepts": [{"name": "Physics.NBody", "description": "Module: Physics.NBody", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Physics.NBody", "type": "primitive"}], "tags": ["topology", "physics", "compression"], "layer": "Documentation", "dependencies": ["LocalDerivative", "FixedPoint", "DynamicCanal", "InformationConservation", "BraidStrand", "Bind", "Physics_StringStarConstants"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Physics_ParticleDomain.md", "title": "Physics.ParticleDomain", "concepts": [{"name": "Physics.ParticleDomain", "description": "Module: Physics.ParticleDomain", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Physics.ParticleDomain", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["Physics", "Physics_Boundary"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Physics_Projection.md", "title": "Physics.Projection", "concepts": [{"name": "Physics.Projection", "description": "Module: Physics.Projection", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Physics.Projection", "type": "primitive"}], "tags": ["topology", "physics", "testing"], "layer": "Documentation", "dependencies": ["Physics", "Physics_Tests", "Physics_Boundary"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Physics_QCLEnergy.md", "title": "Physics.QCLEnergy", "concepts": [{"name": "Physics.QCLEnergy", "description": "Module: Physics.QCLEnergy", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Physics.QCLEnergy", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "Physics_Conservation"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PhysicsScalar.md", "title": "PhysicsScalar", "concepts": [{"name": "PhysicsScalar", "description": "Module: PhysicsScalar", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PhysicsScalar", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["ManifoldStructures", "BoundaryDynamics", "SpikingDynamics", "SubstrateProfile", "CausalGeometry", "CriticalityDynamics", "PhysicsEuclidean", "MultiBodyField", "ExoticSpacetime", "MagnetoPlasma", "Errors", "CosmicStructure", "ManifoldPotential", "SensorField"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Physics_StringStarConstants.md", "title": "Physics.StringStarConstants", "concepts": [{"name": "Physics.StringStarConstants", "description": "Module: Physics.StringStarConstants", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Physics.StringStarConstants", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["FixedPoint", "DynamicCanal", "Physics_NBody"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Physics_Tests.md", "title": "Physics.Tests", "concepts": [{"name": "Physics.Tests", "description": "Module: Physics.Tests", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Physics.Tests", "type": "primitive"}], "tags": ["topology", "physics", "testing"], "layer": "Documentation", "dependencies": ["Physics_Examples", "Physics_Boundary", "Physics_Projection", "Physics_Interaction", "Physics_Conservation", "Physics", "Testing_Tests"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PistBridge.md", "title": "PistBridge", "concepts": [{"name": "PistBridge", "description": "Module: PistBridge", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PistBridge", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "MengerSpongeFractalAddressing", "ShellModel", "NetworkedSelfSolvingSpace", "SSMS", "HybridTSMPISTTorus"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PISTMachine.md", "title": "PISTMachine", "concepts": [{"name": "PISTMachine", "description": "Module: PISTMachine", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PISTMachine", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "PBACSSignal"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PIST.md", "title": "PIST", "concepts": [{"name": "PIST", "description": "Module: PIST", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PIST", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["RotationQUBO", "TriangleManifold"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PistSimulation.md", "title": "PistSimulation", "concepts": [{"name": "PistSimulation", "description": "Module: PistSimulation", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PistSimulation", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["SSMS", "ShellModel", "FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PostQuantumEscrow.md", "title": "PostQuantumEscrow", "concepts": [{"name": "PostQuantumEscrow", "description": "Module: PostQuantumEscrow", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PostQuantumEscrow", "type": "primitive"}], "tags": ["topology", "physics", "testing", "storage"], "layer": "Documentation", "dependencies": ["Testing_ExtremeParameterTest"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PrimeLut.md", "title": "PrimeLut", "concepts": [{"name": "PrimeLut", "description": "Module: PrimeLut", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PrimeLut", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Prohibited.md", "title": "Prohibited", "concepts": [{"name": "Prohibited", "description": "Module: Prohibited", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Prohibited", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Constitution", "CanonSerialization"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Projections.md", "title": "Projections", "concepts": [{"name": "Projections", "description": "Module: Projections", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Projections", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Graph", "Constitution"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Protocol.md", "title": "Protocol", "concepts": [{"name": "Protocol", "description": "Module: Protocol", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "protocol"}, {"name": "Imports", "description": "Section: Imports", "type": "protocol"}, {"name": "Imported by", "description": "Section: Imported by", "type": "protocol"}, {"name": "Tags", "description": "Section: Tags", "type": "protocol"}, {"name": "Semantics", "description": "Identifier in Protocol", "type": "primitive"}], "tags": ["topology", "protocol"], "layer": "Documentation", "dependencies": ["Universality", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Purify.md", "title": "Purify", "concepts": [{"name": "Purify", "description": "Module: Purify", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Purify", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Ingestion"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Q0_16.md", "title": "Q0_16", "concepts": [{"name": "Q0_16", "description": "Module: Q0_16", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Q0_16", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["BrainBoxDescriptor"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/QFactor.md", "title": "QFactor", "concepts": [{"name": "QFactor", "description": "Module: QFactor", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in QFactor", "type": "primitive"}], "tags": ["topology", "gcl"], "layer": "Documentation", "dependencies": ["GeneticGroundUp", "FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/QRGridState.md", "title": "QRGridState", "concepts": [{"name": "QRGridState", "description": "Module: QRGridState", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "protocol"}, {"name": "Imports", "description": "Section: Imports", "type": "protocol"}, {"name": "Imported by", "description": "Section: Imported by", "type": "protocol"}, {"name": "Tags", "description": "Section: Tags", "type": "protocol"}, {"name": "Semantics", "description": "Identifier in QRGridState", "type": "primitive"}], "tags": ["topology", "storage"], "layer": "Documentation", "dependencies": ["TileStateMachine", "TileFlipConsensus"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Quantization.md", "title": "Quantization", "concepts": [{"name": "Quantization", "description": "Module: Quantization", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Quantization", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/QuantizationMetaprobe.md", "title": "QuantizationMetaprobe", "concepts": [{"name": "QuantizationMetaprobe", "description": "Module: QuantizationMetaprobe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in QuantizationMetaprobe", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/QuantumAwareLean.md", "title": "QuantumAwareLean", "concepts": [{"name": "QuantumAwareLean", "description": "Module: QuantumAwareLean", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in QuantumAwareLean", "type": "primitive"}], "tags": ["topology", "physics", "formal-verification"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/QuantumManifoldGeometry.md", "title": "QuantumManifoldGeometry", "concepts": [{"name": "QuantumManifoldGeometry", "description": "Module: QuantumManifoldGeometry", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in QuantumManifoldGeometry", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Quaternion.md", "title": "Quaternion", "concepts": [{"name": "Quaternion", "description": "Module: Quaternion", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Quaternion", "type": "primitive"}], "tags": ["topology", "storage"], "layer": "Documentation", "dependencies": ["DynamicCanal", "AMMR", "TorsionalPIST", "NetworkRAM", "CognitiveMorphemics"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/QuaternionScalar.md", "title": "QuaternionScalar", "concepts": [{"name": "QuaternionScalar", "description": "Module: QuaternionScalar", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in QuaternionScalar", "type": "primitive"}], "tags": ["topology", "timing"], "layer": "Documentation", "dependencies": ["FixedPoint", "EntropyPhaseEngine"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/RaycastField.md", "title": "RaycastField", "concepts": [{"name": "RaycastField", "description": "Module: RaycastField", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in RaycastField", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["LocalDerivative", "FixedPoint", "EquationTranslation"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/RcloneIntegration.md", "title": "RcloneIntegration", "concepts": [{"name": "RcloneIntegration", "description": "Module: RcloneIntegration", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in RcloneIntegration", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["OmnidirectionalInterface", "SubagentOrchestrator"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/RealityContractMassNumber.md", "title": "RealityContractMassNumber", "concepts": [{"name": "RealityContractMassNumber", "description": "Module: RealityContractMassNumber", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in RealityContractMassNumber", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["ForestAutodocRegistry", "MassNumberMetricClosure", "FieldEquationIntegration"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ReceiptCore.md", "title": "ReceiptCore", "concepts": [{"name": "ReceiptCore", "description": "Module: ReceiptCore", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in ReceiptCore", "type": "primitive"}], "tags": ["topology", "compression", "receipt"], "layer": "Documentation", "dependencies": ["HermesAgentIntegration", "GeometricCompressionWorkspace"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/RegimeCore.md", "title": "RegimeCore", "concepts": [{"name": "RegimeCore", "description": "Module: RegimeCore", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in RegimeCore", "type": "primitive"}], "tags": ["topology", "physics", "storage"], "layer": "Documentation", "dependencies": ["DomainState", "BoundaryDynamics", "ManifoldStructures", "SpikingDynamics", "CausalGeometry", "SubstrateProfile", "CriticalityDynamics", "ElectromagneticSpectrum", "MultiBodyField", "ExoticSpacetime", "MagnetoPlasma", "Errors", "CosmicStructure", "ManifoldPotential", "SensorField"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/RelationMaskTrainer.md", "title": "RelationMaskTrainer", "concepts": [{"name": "RelationMaskTrainer", "description": "Module: RelationMaskTrainer", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in RelationMaskTrainer", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ResearchAgent.md", "title": "ResearchAgent", "concepts": [{"name": "ResearchAgent", "description": "Module: ResearchAgent", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in ResearchAgent", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ResonanceGradient.md", "title": "ResonanceGradient", "concepts": [{"name": "ResonanceGradient", "description": "Module: ResonanceGradient", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in ResonanceGradient", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Biology_QuaternionGenomic", "SLUQQuaternionIntegration"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ResourceLayers.md", "title": "ResourceLayers", "concepts": [{"name": "ResourceLayers", "description": "Module: ResourceLayers", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in ResourceLayers", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/RFPFieldSolver.md", "title": "RFPFieldSolver", "concepts": [{"name": "RFPFieldSolver", "description": "Module: RFPFieldSolver", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in RFPFieldSolver", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["FixedPoint", "WavefrontEmitter", "FieldDamping", "NeighborCoupling"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/RotationQUBO.md", "title": "RotationQUBO", "concepts": [{"name": "RotationQUBO", "description": "Module: RotationQUBO", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in RotationQUBO", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "DynamicCanal", "PIST", "TriangleManifold"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/RouteCost.md", "title": "RouteCost", "concepts": [{"name": "RouteCost", "description": "Module: RouteCost", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in RouteCost", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/S3CGeometry.md", "title": "S3CGeometry", "concepts": [{"name": "S3CGeometry", "description": "Module: S3CGeometry", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in S3CGeometry", "type": "primitive"}], "tags": ["topology", "s3c"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/S3CManifoldGeometryMetaprobe.md", "title": "S3CManifoldGeometryMetaprobe", "concepts": [{"name": "S3CManifoldGeometryMetaprobe", "description": "Module: S3CManifoldGeometryMetaprobe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in S3CManifoldGeometryMetaprobe", "type": "primitive"}], "tags": ["topology", "hardware", "s3c"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/S3CManifoldMetaprobe.md", "title": "S3CManifoldMetaprobe", "concepts": [{"name": "S3CManifoldMetaprobe", "description": "Module: S3CManifoldMetaprobe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in S3CManifoldMetaprobe", "type": "primitive"}], "tags": ["topology", "hardware", "s3c"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/S3C.md", "title": "S3C", "concepts": [{"name": "S3C", "description": "Module: S3C", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in S3C", "type": "primitive"}], "tags": ["topology", "swarm", "s3c"], "layer": "Documentation", "dependencies": ["CollectiveManifoldInterface", "NUVMATH"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/S3CResonance.md", "title": "S3CResonance", "concepts": [{"name": "S3CResonance", "description": "Module: S3CResonance", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in S3CResonance", "type": "primitive"}], "tags": ["topology", "s3c"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/S3CUnifiedMetaprobe.md", "title": "S3CUnifiedMetaprobe", "concepts": [{"name": "S3CUnifiedMetaprobe", "description": "Module: S3CUnifiedMetaprobe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in S3CUnifiedMetaprobe", "type": "primitive"}], "tags": ["topology", "hardware", "s3c"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SabotagePrevention.md", "title": "SabotagePrevention", "concepts": [{"name": "SabotagePrevention", "description": "Module: SabotagePrevention", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SabotagePrevention", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ScalarCollapse.md", "title": "ScalarCollapse", "concepts": [{"name": "ScalarCollapse", "description": "Module: ScalarCollapse", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in ScalarCollapse", "type": "primitive"}], "tags": ["topology", "hardware", "receipt"], "layer": "Documentation", "dependencies": ["Decomposition", "Constitution", "Universality", "USBProbe", "Witness"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ScalarEventProjection.md", "title": "ScalarEventProjection", "concepts": [{"name": "ScalarEventProjection", "description": "Module: ScalarEventProjection", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in ScalarEventProjection", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Search.md", "title": "Search", "concepts": [{"name": "Search", "description": "Module: Search", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in Search", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Security.md", "title": "Security", "concepts": [{"name": "Security", "description": "Module: Security", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Security", "type": "primitive"}], "tags": ["topology", "security"], "layer": "Documentation", "dependencies": ["KillerCriterion"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Selfies.md", "title": "Selfies", "concepts": [{"name": "Selfies", "description": "Module: Selfies", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in Selfies", "type": "primitive"}], "tags": ["topology", "formal-verification"], "layer": "Documentation", "dependencies": ["LeanGPTTSMLayer"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SemanticMass.md", "title": "SemanticMass", "concepts": [{"name": "SemanticMass", "description": "Module: SemanticMass", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SemanticMass", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SemanticRGFlow.md", "title": "SemanticRGFlow", "concepts": [{"name": "SemanticRGFlow", "description": "Module: SemanticRGFlow", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in SemanticRGFlow", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["LocalDerivative", "FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SensorField.md", "title": "SensorField", "concepts": [{"name": "SensorField", "description": "Module: SensorField", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SensorField", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["BoundaryDynamics", "SubstrateProfile", "PhysicsScalar", "CausalGeometry", "RegimeCore", "PhysicsEuclidean", "ElectromagneticSpectrum", "Errors"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ShellModel.md", "title": "ShellModel", "concepts": [{"name": "ShellModel", "description": "Module: ShellModel", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in ShellModel", "type": "primitive"}], "tags": ["topology", "physics", "gcl", "storage"], "layer": "Documentation", "dependencies": ["FixedPoint", "AVMR", "PistSimulation", "SpectralField", "BracketShellCount", "PistBridge", "Spectrum", "GeneticCode", "VecState"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SIConstants.md", "title": "SIConstants", "concepts": [{"name": "SIConstants", "description": "Module: SIConstants", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SIConstants", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SigmaGateBenchmark.md", "title": "SigmaGateBenchmark", "concepts": [{"name": "SigmaGateBenchmark", "description": "Module: SigmaGateBenchmark", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SigmaGateBenchmark", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["SigmaGate"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SigmaGateEntropy.md", "title": "SigmaGateEntropy", "concepts": [{"name": "SigmaGateEntropy", "description": "Module: SigmaGateEntropy", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SigmaGateEntropy", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["SigmaGate", "EntropyMeasures"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SigmaGate.md", "title": "SigmaGate", "concepts": [{"name": "SigmaGate", "description": "Module: SigmaGate", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SigmaGate", "type": "primitive"}], "tags": ["topology", "testing", "storage", "receipt"], "layer": "Documentation", "dependencies": ["SigmaGateEntropy", "FixedPoint", "SigmaGateBenchmark", "Bind", "WitnessGrammar", "CoulombComplexity"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SIMDBranchPrediction.md", "title": "SIMDBranchPrediction", "concepts": [{"name": "SIMDBranchPrediction", "description": "Module: SIMDBranchPrediction", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SIMDBranchPrediction", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SLUG3.md", "title": "SLUG3", "concepts": [{"name": "SLUG3", "description": "Module: SLUG3", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SLUG3", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["FixedPoint", "Testing_SilhouetteTest", "Biology_QuaternionGenomic", "Decoder"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SLUQ.md", "title": "SLUQ", "concepts": [{"name": "SLUQ", "description": "Module: SLUQ", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SLUQ", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["CacheSieve", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SLUQQuaternionIntegration.md", "title": "SLUQQuaternionIntegration", "concepts": [{"name": "SLUQQuaternionIntegration", "description": "Module: SLUQQuaternionIntegration", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SLUQQuaternionIntegration", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["ResonanceGradient", "FixedPoint", "Biology_QuaternionGenomic"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SLUQTriage.md", "title": "SLUQTriage", "concepts": [{"name": "SLUQTriage", "description": "Module: SLUQTriage", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SLUQTriage", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Smiles.md", "title": "Smiles", "concepts": [{"name": "Smiles", "description": "Module: Smiles", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in Smiles", "type": "primitive"}], "tags": ["topology", "formal-verification"], "layer": "Documentation", "dependencies": ["LeanGPTTSMLayer"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SolitonLighthouse.md", "title": "SolitonLighthouse", "concepts": [{"name": "SolitonLighthouse", "description": "Module: SolitonLighthouse", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SolitonLighthouse", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["LocalDerivative", "MetricCore", "CanonicalInterval"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SolitonTensor.md", "title": "SolitonTensor", "concepts": [{"name": "SolitonTensor", "description": "Module: SolitonTensor", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SolitonTensor", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Functions_BracketedCalculus"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SparkleBridge.md", "title": "SparkleBridge", "concepts": [{"name": "SparkleBridge", "description": "Module: SparkleBridge", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SparkleBridge", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SpatialEvo.md", "title": "SpatialEvo", "concepts": [{"name": "SpatialEvo", "description": "Module: SpatialEvo", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SpatialEvo", "type": "primitive"}], "tags": ["topology", "timing"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SpectralField.md", "title": "SpectralField", "concepts": [{"name": "SpectralField", "description": "Module: SpectralField", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SpectralField", "type": "primitive"}], "tags": ["topology", "physics", "gcl"], "layer": "Documentation", "dependencies": ["FixedPoint", "AVMR", "ShellModel", "Spectrum", "GeneticCode"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Spectrum.md", "title": "Spectrum", "concepts": [{"name": "Spectrum", "description": "Module: Spectrum", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in Spectrum", "type": "primitive"}], "tags": ["topology", "physics", "formal-verification", "swarm", "gcl", "storage"], "layer": "Documentation", "dependencies": ["Extensions_NeuralFieldDynamics", "Extensions_RhythmicStructuralDynamics", "Extensions_StoichiometricMetabolicDynamics", "Extensions_BiologicalRegulationDynamics", "Extensions_LifeHistoryTradeoffLaws", "Extensions_PlantPhyllotaxisLaws", "Extensions_ManifoldBlit", "Extensions_EpidemiologicalDynamics", "Extensions_FractalVascularLaws", "Extensions_LifeHistoryInvariants", "Extensions_ResilienceTippingDynamics", "Extensions_SoilFungalDynamics", "Extensions_CellularMotionLimits", "Extensions_PlantHydraulicDynamics", "Extensions_FisherGeometricAdaptationLaws", "Extensions_BioDeepDive", "Extensions_ConstructalMuscleDynamics", "Extensions_SocialMotionVisionDynamics", "Extensions_BiologicalControlDynamics", "VecState"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SpikingDynamics.md", "title": "SpikingDynamics", "concepts": [{"name": "SpikingDynamics", "description": "Module: SpikingDynamics", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SpikingDynamics", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["ManifoldStructures", "PhysicsLagrangian", "PhysicsScalar", "BoundaryDynamics", "CriticalityDynamics", "RegimeCore", "PhysicsEuclidean", "ElectromagneticSpectrum", "ExoticSpacetime", "MultiBodyField"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SSMS.md", "title": "SSMS", "concepts": [{"name": "SSMS", "description": "Module: SSMS", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in SSMS", "type": "primitive"}], "tags": ["topology", "swarm", "timing"], "layer": "Documentation", "dependencies": ["FixedPoint", "PistSimulation", "Biology_RGFlowBioinformatics", "BitcoinRGFlow", "Tactics", "Timing", "SwarmAnalysis", "SwarmRGFlow", "EthereumRGFlow", "PistBridge", "CooperativeLUT", "SSMS_nD"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SSMSMetaprobe.md", "title": "SSMSMetaprobe", "concepts": [{"name": "SSMSMetaprobe", "description": "Module: SSMSMetaprobe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SSMSMetaprobe", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SSMS_nD.md", "title": "SSMS_nD", "concepts": [{"name": "SSMS_nD", "description": "Module: SSMS_nD", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SSMS_nD", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["SSMS", "FixedPoint", "DomainKernel", "UniversalCoupling"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/StreamCompression.md", "title": "StreamCompression", "concepts": [{"name": "StreamCompression", "description": "Module: StreamCompression", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in StreamCompression", "type": "primitive"}], "tags": ["topology", "compression", "swarm", "timing"], "layer": "Documentation", "dependencies": ["FixedPoint", "Timing", "SwarmDesignReview", "HumanNeuralCompression"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SubagentOrchestrator.md", "title": "SubagentOrchestrator", "concepts": [{"name": "SubagentOrchestrator", "description": "Module: SubagentOrchestrator", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "spec"}, {"name": "Imports", "description": "Section: Imports", "type": "spec"}, {"name": "Imported by", "description": "Section: Imported by", "type": "spec"}, {"name": "Tags", "description": "Section: Tags", "type": "spec"}, {"name": "Semantics", "description": "Identifier in SubagentOrchestrator", "type": "primitive"}], "tags": ["topology", "hardware", "swarm"], "layer": "Documentation", "dependencies": ["FixedPoint", "SwarmQueryAPI", "DomainModelIntegration", "RcloneIntegration", "SwarmMoERewiring", "GpuDutyAssignment", "OmnidirectionalInterface"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Substrate.md", "title": "Substrate", "concepts": [{"name": "Substrate", "description": "Module: Substrate", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in Substrate", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": ["FixedPoint", "ChatLogConversion", "Constitution", "Universality", "USBProbe"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SubstrateProfile.md", "title": "SubstrateProfile", "concepts": [{"name": "SubstrateProfile", "description": "Module: SubstrateProfile", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SubstrateProfile", "type": "primitive"}], "tags": ["topology", "physics", "hardware", "storage"], "layer": "Documentation", "dependencies": ["ManifoldStructures", "BoundaryDynamics", "PhysicsScalar", "CausalGeometry", "RegimeCore", "ElectromagneticSpectrum", "SensorField", "Orchestrate_TopologyProbe", "DomainState"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Support_NetworkUtilization.md", "title": "Support.NetworkUtilization", "concepts": [{"name": "Support.NetworkUtilization", "description": "Module: Support.NetworkUtilization", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Support.NetworkUtilization", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SurfaceCore.md", "title": "SurfaceCore", "concepts": [{"name": "SurfaceCore", "description": "Module: SurfaceCore", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SurfaceCore", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["LocalDerivative", "FixedPoint", "MetricCore", "Surface", "CanonicalInterval"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Surface.md", "title": "Surface", "concepts": [{"name": "Surface", "description": "Module: Surface", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in Surface", "type": "primitive"}], "tags": ["topology", "compression", "visualization", "protocol", "gcl"], "layer": "Documentation", "dependencies": ["JsonLSurfaceConnector", "PassiveComputation", "MetadataSurfaceComputation", "WebRTCWaveformSync", "EquationTranslation", "GoldenAngleEncoding", "PhiShellEncoding", "SurfaceCore", "TopologyNode", "FibonacciEncoding", "WebInteractionSurface"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SwarmAnalysis.md", "title": "SwarmAnalysis", "concepts": [{"name": "SwarmAnalysis", "description": "Module: SwarmAnalysis", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SwarmAnalysis", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": ["UniversalCoupling", "SSMS"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SwarmCodeGeneration.md", "title": "SwarmCodeGeneration", "concepts": [{"name": "SwarmCodeGeneration", "description": "Module: SwarmCodeGeneration", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SwarmCodeGeneration", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": ["FixedPoint", "TopologicalAwareness"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SwarmCodeReview.md", "title": "SwarmCodeReview", "concepts": [{"name": "SwarmCodeReview", "description": "Module: SwarmCodeReview", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SwarmCodeReview", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SwarmCompetition.md", "title": "SwarmCompetition", "concepts": [{"name": "SwarmCompetition", "description": "Module: SwarmCompetition", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in SwarmCompetition", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": ["SwarmMoERewiring", "FixedPoint", "TriumvirateEnforcer"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SwarmDesignReview.md", "title": "SwarmDesignReview", "concepts": [{"name": "SwarmDesignReview", "description": "Module: SwarmDesignReview", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in SwarmDesignReview", "type": "primitive"}], "tags": ["topology", "compression", "formal-verification", "swarm"], "layer": "Documentation", "dependencies": ["FixedPoint", "NIICore", "StreamCompression", "NIICore_TranslationEngine", "NIICore_SemanticAnalysis", "HachimojiPipeline", "NIICore_SurfaceDriver", "NIICore_Verification", "HutterPrizeISA"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SwarmENEMiddleware.md", "title": "SwarmENEMiddleware", "concepts": [{"name": "SwarmENEMiddleware", "description": "Module: SwarmENEMiddleware", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in SwarmENEMiddleware", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SwarmMoERewiring.md", "title": "SwarmMoERewiring", "concepts": [{"name": "SwarmMoERewiring", "description": "Module: SwarmMoERewiring", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in SwarmMoERewiring", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": ["FixedPoint", "EtaMoE", "SwarmCompetition", "SubagentOrchestrator"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SwarmQueryAPI.md", "title": "SwarmQueryAPI", "concepts": [{"name": "SwarmQueryAPI", "description": "Module: SwarmQueryAPI", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "spec"}, {"name": "Imports", "description": "Section: Imports", "type": "spec"}, {"name": "Imported by", "description": "Section: Imported by", "type": "spec"}, {"name": "Tags", "description": "Section: Tags", "type": "spec"}, {"name": "Semantics", "description": "Identifier in SwarmQueryAPI", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": ["FixedPoint", "SubagentOrchestrator", "OmnidirectionalInterface"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SwarmRGFlow.md", "title": "SwarmRGFlow", "concepts": [{"name": "SwarmRGFlow", "description": "Module: SwarmRGFlow", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in SwarmRGFlow", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": ["SSMS", "CooperativeLUT"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SwarmTopology.md", "title": "SwarmTopology", "concepts": [{"name": "SwarmTopology", "description": "Module: SwarmTopology", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in SwarmTopology", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SyntheticGeneticCoding.md", "title": "SyntheticGeneticCoding", "concepts": [{"name": "SyntheticGeneticCoding", "description": "Module: SyntheticGeneticCoding", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SyntheticGeneticCoding", "type": "primitive"}], "tags": ["topology", "gcl"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Tactics.md", "title": "Tactics", "concepts": [{"name": "Tactics", "description": "Module: Tactics", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Tactics", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["SSMS", "DynamicCanal", "EntropyMeasures"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Tape.md", "title": "Tape", "concepts": [{"name": "Tape", "description": "Module: Tape", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Tape", "type": "primitive"}], "tags": ["topology", "storage"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TemporalSpatialRAM.md", "title": "TemporalSpatialRAM", "concepts": [{"name": "TemporalSpatialRAM", "description": "Module: TemporalSpatialRAM", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in TemporalSpatialRAM", "type": "primitive"}], "tags": ["topology", "storage", "timing"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_AdversarialTopologyTest.md", "title": "Testing.AdversarialTopologyTest", "concepts": [{"name": "Testing.AdversarialTopologyTest", "description": "Module: Testing.AdversarialTopologyTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in Testing.AdversarialTopologyTest", "type": "primitive"}], "tags": ["topology", "testing", "security", "storage"], "layer": "Documentation", "dependencies": ["ManifoldNetworking", "Testing_ExtremeParameterTest"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_ArrayTest.md", "title": "Testing.ArrayTest", "concepts": [{"name": "Testing.ArrayTest", "description": "Module: Testing.ArrayTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.ArrayTest", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_BaselineTest.md", "title": "Testing.BaselineTest", "concepts": [{"name": "Testing.BaselineTest", "description": "Module: Testing.BaselineTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.BaselineTest", "type": "primitive"}], "tags": ["topology", "testing", "storage"], "layer": "Documentation", "dependencies": ["ExtremeParameterTest"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_BitcoinRGFlowTest.md", "title": "Testing.BitcoinRGFlowTest", "concepts": [{"name": "Testing.BitcoinRGFlowTest", "description": "Module: Testing.BitcoinRGFlowTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in Testing.BitcoinRGFlowTest", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["BitcoinRGFlow"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_CBFTests.md", "title": "Testing.CBFTests", "concepts": [{"name": "Testing.CBFTests", "description": "Module: Testing.CBFTests", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.CBFTests", "type": "primitive"}], "tags": ["topology", "compression", "testing"], "layer": "Documentation", "dependencies": ["BraidStrand", "BraidCross", "MasterEquation", "BraidBracket"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_CongestionStabilityTest.md", "title": "Testing.CongestionStabilityTest", "concepts": [{"name": "Testing.CongestionStabilityTest", "description": "Module: Testing.CongestionStabilityTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.CongestionStabilityTest", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["ManifoldNetworking"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_ConservationTest.md", "title": "Testing.ConservationTest", "concepts": [{"name": "Testing.ConservationTest", "description": "Module: Testing.ConservationTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Testing.ConservationTest", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["ManifoldNetworking"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_ControlTransferTest.md", "title": "Testing.ControlTransferTest", "concepts": [{"name": "Testing.ControlTransferTest", "description": "Module: Testing.ControlTransferTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.ControlTransferTest", "type": "primitive"}], "tags": ["topology", "testing", "storage"], "layer": "Documentation", "dependencies": ["Testing_ExtremeParameterTest"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_DeltaGCLBenchmark.md", "title": "Testing.DeltaGCLBenchmark", "concepts": [{"name": "Testing.DeltaGCLBenchmark", "description": "Module: Testing.DeltaGCLBenchmark", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in Testing.DeltaGCLBenchmark", "type": "primitive"}], "tags": ["topology", "compression", "testing", "gcl"], "layer": "Documentation", "dependencies": ["FixedPoint", "DeltaGCLCompression"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_ExtremeParameterTest.md", "title": "Testing.ExtremeParameterTest", "concepts": [{"name": "Testing.ExtremeParameterTest", "description": "Module: Testing.ExtremeParameterTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Testing.ExtremeParameterTest", "type": "primitive"}], "tags": ["topology", "physics", "formal-verification", "testing", "security", "storage", "receipt"], "layer": "Documentation", "dependencies": ["FixedPoint", "Testing_ControlTransferTest", "PostQuantumEscrow", "Testing_ReceiptReproducibilityTest", "Bind", "AngrySphinxPolicy", "Testing_PersonhoodBoundaryTest", "Testing_AdversarialTopologyTest", "Testing_OpenWormInvariantTest", "Testing_PrivacyBypassTest", "Testing_SigmaDAGTest", "Testing_NominalParameterTest"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_FairnessTest.md", "title": "Testing.FairnessTest", "concepts": [{"name": "Testing.FairnessTest", "description": "Module: Testing.FairnessTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.FairnessTest", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["ManifoldNetworking"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_FlatLimitTest.md", "title": "Testing.FlatLimitTest", "concepts": [{"name": "Testing.FlatLimitTest", "description": "Module: Testing.FlatLimitTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.FlatLimitTest", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["ManifoldNetworking"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_GeneticGroundUpBenchmark.md", "title": "Testing.GeneticGroundUpBenchmark", "concepts": [{"name": "Testing.GeneticGroundUpBenchmark", "description": "Module: Testing.GeneticGroundUpBenchmark", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.GeneticGroundUpBenchmark", "type": "primitive"}], "tags": ["topology", "testing", "gcl"], "layer": "Documentation", "dependencies": ["GeneticGroundUp"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_HutterPrizeFlowTest.md", "title": "Testing.HutterPrizeFlowTest", "concepts": [{"name": "Testing.HutterPrizeFlowTest", "description": "Module: Testing.HutterPrizeFlowTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in Testing.HutterPrizeFlowTest", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["HutterPrizeFlow"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_LemmaTest2.md", "title": "Testing.LemmaTest2", "concepts": [{"name": "Testing.LemmaTest2", "description": "Module: Testing.LemmaTest2", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "theorem"}, {"name": "Imports", "description": "Section: Imports", "type": "theorem"}, {"name": "Imported by", "description": "Section: Imported by", "type": "theorem"}, {"name": "Tags", "description": "Section: Tags", "type": "theorem"}, {"name": "Semantics", "description": "Identifier in Testing.LemmaTest2", "type": "primitive"}], "tags": ["topology", "formal-verification", "testing"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_LemmaTest.md", "title": "Testing.LemmaTest", "concepts": [{"name": "Testing.LemmaTest", "description": "Module: Testing.LemmaTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "theorem"}, {"name": "Imports", "description": "Section: Imports", "type": "theorem"}, {"name": "Imported by", "description": "Section: Imported by", "type": "theorem"}, {"name": "Tags", "description": "Section: Tags", "type": "theorem"}, {"name": "Semantics", "description": "Identifier in Testing.LemmaTest", "type": "primitive"}], "tags": ["topology", "formal-verification", "testing"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_MOIMBenchmark.md", "title": "Testing.MOIMBenchmark", "concepts": [{"name": "Testing.MOIMBenchmark", "description": "Module: Testing.MOIMBenchmark", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.MOIMBenchmark", "type": "primitive"}], "tags": ["topology", "compression", "testing", "gcl"], "layer": "Documentation", "dependencies": ["FixedPoint", "TopologyDlessScalar", "TopologyFractalEncoding", "TopologyGoldenSpiral", "TopologyPhinary", "TopologyDomainAlignment"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_NominalParameterTest.md", "title": "Testing.NominalParameterTest", "concepts": [{"name": "Testing.NominalParameterTest", "description": "Module: Testing.NominalParameterTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.NominalParameterTest", "type": "primitive"}], "tags": ["topology", "testing", "storage"], "layer": "Documentation", "dependencies": ["Testing_ExtremeParameterTest"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_OpenWormInvariantTest.md", "title": "Testing.OpenWormInvariantTest", "concepts": [{"name": "Testing.OpenWormInvariantTest", "description": "Module: Testing.OpenWormInvariantTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Testing.OpenWormInvariantTest", "type": "primitive"}], "tags": ["topology", "formal-verification", "testing", "storage"], "layer": "Documentation", "dependencies": ["Testing_ExtremeParameterTest"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_PersonhoodBoundaryTest.md", "title": "Testing.PersonhoodBoundaryTest", "concepts": [{"name": "Testing.PersonhoodBoundaryTest", "description": "Module: Testing.PersonhoodBoundaryTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Testing.PersonhoodBoundaryTest", "type": "primitive"}], "tags": ["topology", "testing", "security", "storage"], "layer": "Documentation", "dependencies": ["Testing_ExtremeParameterTest"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_PhaseOrderingTest.md", "title": "Testing.PhaseOrderingTest", "concepts": [{"name": "Testing.PhaseOrderingTest", "description": "Module: Testing.PhaseOrderingTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.PhaseOrderingTest", "type": "primitive"}], "tags": ["topology", "testing", "timing"], "layer": "Documentation", "dependencies": ["ManifoldNetworking"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_PrivacyBypassTest.md", "title": "Testing.PrivacyBypassTest", "concepts": [{"name": "Testing.PrivacyBypassTest", "description": "Module: Testing.PrivacyBypassTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.PrivacyBypassTest", "type": "primitive"}], "tags": ["topology", "testing", "security", "storage"], "layer": "Documentation", "dependencies": ["Testing_ExtremeParameterTest"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_ReceiptReproducibilityTest.md", "title": "Testing.ReceiptReproducibilityTest", "concepts": [{"name": "Testing.ReceiptReproducibilityTest", "description": "Module: Testing.ReceiptReproducibilityTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.ReceiptReproducibilityTest", "type": "primitive"}], "tags": ["topology", "testing", "storage", "receipt"], "layer": "Documentation", "dependencies": ["Testing_ExtremeParameterTest"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_S3C_test2.md", "title": "Testing.S3C_test2", "concepts": [{"name": "Testing.S3C_test2", "description": "Module: Testing.S3C_test2", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.S3C_test2", "type": "primitive"}], "tags": ["topology", "testing", "s3c"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_S3C_test.md", "title": "Testing.S3C_test", "concepts": [{"name": "Testing.S3C_test", "description": "Module: Testing.S3C_test", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.S3C_test", "type": "primitive"}], "tags": ["topology", "testing", "s3c"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_SigmaDAGTest.md", "title": "Testing.SigmaDAGTest", "concepts": [{"name": "Testing.SigmaDAGTest", "description": "Module: Testing.SigmaDAGTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.SigmaDAGTest", "type": "primitive"}], "tags": ["topology", "testing", "storage"], "layer": "Documentation", "dependencies": ["Testing_ExtremeParameterTest"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_SilhouetteTest.md", "title": "Testing.SilhouetteTest", "concepts": [{"name": "Testing.SilhouetteTest", "description": "Module: Testing.SilhouetteTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.SilhouetteTest", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["SLUG3", "DynamicCanal", "Connectors", "Decoder"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_StructuralAttestation.md", "title": "Testing.StructuralAttestation", "concepts": [{"name": "Testing.StructuralAttestation", "description": "Module: Testing.StructuralAttestation", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.StructuralAttestation", "type": "primitive"}], "tags": ["topology", "testing", "receipt"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_Tests.md", "title": "Testing.Tests", "concepts": [{"name": "Testing.Tests", "description": "Module: Testing.Tests", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.Tests", "type": "primitive"}], "tags": ["topology", "physics", "testing"], "layer": "Documentation", "dependencies": ["Physics_Tests"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_TestTactics.md", "title": "Testing.TestTactics", "concepts": [{"name": "Testing.TestTactics", "description": "Module: Testing.TestTactics", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.TestTactics", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_TorsionalTest.md", "title": "Testing.TorsionalTest", "concepts": [{"name": "Testing.TorsionalTest", "description": "Module: Testing.TorsionalTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.TorsionalTest", "type": "primitive"}], "tags": ["topology", "testing", "storage"], "layer": "Documentation", "dependencies": ["TorsionalPIST", "NetworkRAM", "Benchmarks_Grid17x17", "DynamicCanal"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_VirtualGPUBenchmark.md", "title": "Testing.VirtualGPUBenchmark", "concepts": [{"name": "Testing.VirtualGPUBenchmark", "description": "Module: Testing.VirtualGPUBenchmark", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.VirtualGPUBenchmark", "type": "primitive"}], "tags": ["topology", "hardware", "testing"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_VirtualGPUTestbench.md", "title": "Testing.VirtualGPUTestbench", "concepts": [{"name": "Testing.VirtualGPUTestbench", "description": "Module: Testing.VirtualGPUTestbench", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.VirtualGPUTestbench", "type": "primitive"}], "tags": ["topology", "hardware", "testing"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_WorkloadTestbench.md", "title": "Testing.WorkloadTestbench", "concepts": [{"name": "Testing.WorkloadTestbench", "description": "Module: Testing.WorkloadTestbench", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Testing.WorkloadTestbench", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_ZKBenchmarkCapsule.md", "title": "Testing.ZKBenchmarkCapsule", "concepts": [{"name": "Testing.ZKBenchmarkCapsule", "description": "Module: Testing.ZKBenchmarkCapsule", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "tool"}, {"name": "Imports", "description": "Section: Imports", "type": "tool"}, {"name": "Imported by", "description": "Section: Imported by", "type": "tool"}, {"name": "Tags", "description": "Section: Tags", "type": "tool"}, {"name": "Semantics", "description": "Identifier in Testing.ZKBenchmarkCapsule", "type": "primitive"}], "tags": ["topology", "testing", "storage"], "layer": "Documentation", "dependencies": ["ExtremeParameterTest"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ThermodynamicSort.md", "title": "ThermodynamicSort", "concepts": [{"name": "ThermodynamicSort", "description": "Module: ThermodynamicSort", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in ThermodynamicSort", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TileFlipConsensus.md", "title": "TileFlipConsensus", "concepts": [{"name": "TileFlipConsensus", "description": "Module: TileFlipConsensus", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "protocol"}, {"name": "Imports", "description": "Section: Imports", "type": "protocol"}, {"name": "Imported by", "description": "Section: Imported by", "type": "protocol"}, {"name": "Tags", "description": "Section: Tags", "type": "protocol"}, {"name": "Semantics", "description": "Identifier in TileFlipConsensus", "type": "primitive"}], "tags": ["topology", "storage"], "layer": "Documentation", "dependencies": ["QRGridState", "FaultTolerance", "ConflictResolution", "GossipFlipMessage"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TileStateMachine.md", "title": "TileStateMachine", "concepts": [{"name": "TileStateMachine", "description": "Module: TileStateMachine", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in TileStateMachine", "type": "primitive"}], "tags": ["topology", "storage"], "layer": "Documentation", "dependencies": ["QRGridState", "ConflictResolution"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Timing.md", "title": "Timing", "concepts": [{"name": "Timing", "description": "Module: Timing", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in Timing", "type": "primitive"}], "tags": ["topology", "compression", "timing"], "layer": "Documentation", "dependencies": ["NIICore", "DynamicCanal", "StreamCompression", "HachimojiPipeline", "NIICore_SurfaceDriver", "SSMS", "ManifoldFlow", "HutterPrizeISA"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TMMCP_Compression.md", "title": "TMMCP.Compression", "concepts": [{"name": "TMMCP.Compression", "description": "Module: TMMCP.Compression", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in TMMCP.Compression", "type": "primitive"}], "tags": ["topology", "compression", "formal-verification", "protocol", "s3c"], "layer": "Documentation", "dependencies": ["TMMCP_Routing", "FixedPoint", "TMMCP_Core", "TMMCP_Verification"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TMMCP_Core.md", "title": "TMMCP.Core", "concepts": [{"name": "TMMCP.Core", "description": "Module: TMMCP.Core", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in TMMCP.Core", "type": "primitive"}], "tags": ["topology", "compression", "formal-verification", "protocol", "s3c"], "layer": "Documentation", "dependencies": ["TMMCP_Routing", "FixedPoint", "TMMCP_Compression", "TMMCP_Verification"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TMMCP_Routing.md", "title": "TMMCP.Routing", "concepts": [{"name": "TMMCP.Routing", "description": "Module: TMMCP.Routing", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in TMMCP.Routing", "type": "primitive"}], "tags": ["topology", "compression", "protocol", "s3c"], "layer": "Documentation", "dependencies": ["FixedPoint", "TMMCP_Compression", "TMMCP_Core"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TMMCP_Verification.md", "title": "TMMCP.Verification", "concepts": [{"name": "TMMCP.Verification", "description": "Module: TMMCP.Verification", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "theorem"}, {"name": "Imports", "description": "Section: Imports", "type": "theorem"}, {"name": "Imported by", "description": "Section: Imported by", "type": "theorem"}, {"name": "Tags", "description": "Section: Tags", "type": "theorem"}, {"name": "Semantics", "description": "Identifier in TMMCP.Verification", "type": "primitive"}], "tags": ["topology", "compression", "formal-verification", "s3c"], "layer": "Documentation", "dependencies": ["FixedPoint", "TMMCP_Compression", "TMMCP_Core"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TopologicalAwareness.md", "title": "TopologicalAwareness", "concepts": [{"name": "TopologicalAwareness", "description": "Module: TopologicalAwareness", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in TopologicalAwareness", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": ["FixedPoint", "AgenticCore", "SwarmCodeGeneration"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TopologicalPersistence.md", "title": "TopologicalPersistence", "concepts": [{"name": "TopologicalPersistence", "description": "Module: TopologicalPersistence", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in TopologicalPersistence", "type": "primitive"}], "tags": ["topology", "compression"], "layer": "Documentation", "dependencies": ["FixedPoint", "HumanNeuralCompression", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TopologyDlessScalar.md", "title": "TopologyDlessScalar", "concepts": [{"name": "TopologyDlessScalar", "description": "Module: TopologyDlessScalar", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in TopologyDlessScalar", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["Testing_MOIMBenchmark", "FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TopologyDomainAlignment.md", "title": "TopologyDomainAlignment", "concepts": [{"name": "TopologyDomainAlignment", "description": "Module: TopologyDomainAlignment", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in TopologyDomainAlignment", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["Testing_MOIMBenchmark"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TopologyFractalEncoding.md", "title": "TopologyFractalEncoding", "concepts": [{"name": "TopologyFractalEncoding", "description": "Module: TopologyFractalEncoding", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in TopologyFractalEncoding", "type": "primitive"}], "tags": ["topology", "compression", "testing", "gcl"], "layer": "Documentation", "dependencies": ["Testing_MOIMBenchmark", "FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TopologyGoldenSpiral.md", "title": "TopologyGoldenSpiral", "concepts": [{"name": "TopologyGoldenSpiral", "description": "Module: TopologyGoldenSpiral", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in TopologyGoldenSpiral", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["Testing_MOIMBenchmark", "FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TopologyNode.md", "title": "TopologyNode", "concepts": [{"name": "TopologyNode", "description": "Module: TopologyNode", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in TopologyNode", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["TopologyResilience", "Surface", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TopologyOptimization.md", "title": "TopologyOptimization", "concepts": [{"name": "TopologyOptimization", "description": "Module: TopologyOptimization", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in TopologyOptimization", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": ["FixedPoint", "Orchestrate_TopologyProbe"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TopologyPhinary.md", "title": "TopologyPhinary", "concepts": [{"name": "TopologyPhinary", "description": "Module: TopologyPhinary", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in TopologyPhinary", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["Testing_MOIMBenchmark", "FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TopologyResilience.md", "title": "TopologyResilience", "concepts": [{"name": "TopologyResilience", "description": "Module: TopologyResilience", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in TopologyResilience", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Curvature", "GeometricTopology", "TopologyNode"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TorsionalPIST.md", "title": "TorsionalPIST", "concepts": [{"name": "TorsionalPIST", "description": "Module: TorsionalPIST", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in TorsionalPIST", "type": "primitive"}], "tags": ["topology", "testing", "storage"], "layer": "Documentation", "dependencies": ["FixedPoint", "Quaternion", "DynamicCanal", "AMMR", "Testing_TorsionalTest", "Adaptation", "NetworkRAM", "CognitiveMorphemics"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Transition.md", "title": "Transition", "concepts": [{"name": "Transition", "description": "Module: Transition", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Transition", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Canon"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TriangleManifold.md", "title": "TriangleManifold", "concepts": [{"name": "TriangleManifold", "description": "Module: TriangleManifold", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in TriangleManifold", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "RotationQUBO", "PIST"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TriumvirateEnforcer.md", "title": "TriumvirateEnforcer", "concepts": [{"name": "TriumvirateEnforcer", "description": "Module: TriumvirateEnforcer", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in TriumvirateEnforcer", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": ["Orchestrate", "SwarmCompetition"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TrophicCascadeMetaprobe.md", "title": "TrophicCascadeMetaprobe", "concepts": [{"name": "TrophicCascadeMetaprobe", "description": "Module: TrophicCascadeMetaprobe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in TrophicCascadeMetaprobe", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TSMEfficiency.md", "title": "TSMEfficiency", "concepts": [{"name": "TSMEfficiency", "description": "Module: TSMEfficiency", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in TSMEfficiency", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/UnifiedConvictionFlow.md", "title": "UnifiedConvictionFlow", "concepts": [{"name": "UnifiedConvictionFlow", "description": "Module: UnifiedConvictionFlow", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in UnifiedConvictionFlow", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/UnifiedDomainTheory.md", "title": "UnifiedDomainTheory", "concepts": [{"name": "UnifiedDomainTheory", "description": "Module: UnifiedDomainTheory", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in UnifiedDomainTheory", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/UnifiedSchema.md", "title": "UnifiedSchema", "concepts": [{"name": "UnifiedSchema", "description": "Module: UnifiedSchema", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in UnifiedSchema", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Navigator", "Hyperfluid"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/UnitConversion.md", "title": "UnitConversion", "concepts": [{"name": "UnitConversion", "description": "Module: UnitConversion", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in UnitConversion", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/UniversalCoupling.md", "title": "UniversalCoupling", "concepts": [{"name": "UniversalCoupling", "description": "Module: UniversalCoupling", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in UniversalCoupling", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": ["SwarmAnalysis", "SSMS_nD", "DomainKernel"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/UniversalField.md", "title": "UniversalField", "concepts": [{"name": "UniversalField", "description": "Module: UniversalField", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in UniversalField", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Universality.md", "title": "Universality", "concepts": [{"name": "Universality", "description": "Module: Universality", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Universality", "type": "primitive"}], "tags": ["topology", "protocol", "receipt"], "layer": "Documentation", "dependencies": ["Substrate", "Protocol", "ScalarCollapse", "Constitution", "Witness"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/USBProbe.md", "title": "USBProbe", "concepts": [{"name": "USBProbe", "description": "Module: USBProbe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in USBProbe", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": ["Substrate", "FixedPoint", "ScalarCollapse"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/VecState.md", "title": "VecState", "concepts": [{"name": "VecState", "description": "Module: VecState", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in VecState", "type": "primitive"}], "tags": ["topology", "gcl", "storage"], "layer": "Documentation", "dependencies": ["FixedPoint", "AVMR", "ShellModel", "Spectrum", "GeneticCode"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/VideoPhysics.md", "title": "VideoPhysics", "concepts": [{"name": "VideoPhysics", "description": "Module: VideoPhysics", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in VideoPhysics", "type": "primitive"}], "tags": ["topology", "physics", "visualization"], "layer": "Documentation", "dependencies": ["FixedPoint", "MereotopologicalVideo"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/VirtualGPUTopology.md", "title": "VirtualGPUTopology", "concepts": [{"name": "VirtualGPUTopology", "description": "Module: VirtualGPUTopology", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in VirtualGPUTopology", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/VirtualWarpMetric.md", "title": "VirtualWarpMetric", "concepts": [{"name": "VirtualWarpMetric", "description": "Module: VirtualWarpMetric", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in VirtualWarpMetric", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "ManifoldStructures", "MasterEquation", "HybridTSMPISTTorus"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/VLsIPartition.md", "title": "VLsIPartition", "concepts": [{"name": "VLsIPartition", "description": "Module: VLsIPartition", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in VLsIPartition", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/VoxelEncoding.md", "title": "VoxelEncoding", "concepts": [{"name": "VoxelEncoding", "description": "Module: VoxelEncoding", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in VoxelEncoding", "type": "primitive"}], "tags": ["topology", "compression", "gcl"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WaveformWaveprobePipeline.md", "title": "WaveformWaveprobePipeline", "concepts": [{"name": "WaveformWaveprobePipeline", "description": "Module: WaveformWaveprobePipeline", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in WaveformWaveprobePipeline", "type": "primitive"}], "tags": ["topology", "hardware", "visualization"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WavefrontEmitter.md", "title": "WavefrontEmitter", "concepts": [{"name": "WavefrontEmitter", "description": "Module: WavefrontEmitter", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in WavefrontEmitter", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["RFPFieldSolver"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Waveprobe.md", "title": "Waveprobe", "concepts": [{"name": "Waveprobe", "description": "Module: Waveprobe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Waveprobe", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": ["KimiProber"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WebInteractionSurface.md", "title": "WebInteractionSurface", "concepts": [{"name": "WebInteractionSurface", "description": "Module: WebInteractionSurface", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in WebInteractionSurface", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Surface"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WebRTCWaveformSync.md", "title": "WebRTCWaveformSync", "concepts": [{"name": "WebRTCWaveformSync", "description": "Module: WebRTCWaveformSync", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "protocol"}, {"name": "Imports", "description": "Section: Imports", "type": "protocol"}, {"name": "Imported by", "description": "Section: Imported by", "type": "protocol"}, {"name": "Tags", "description": "Section: Tags", "type": "protocol"}, {"name": "Semantics", "description": "Identifier in WebRTCWaveformSync", "type": "primitive"}], "tags": ["topology", "visualization", "protocol"], "layer": "Documentation", "dependencies": ["Surface"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WitnessGrammar.md", "title": "WitnessGrammar", "concepts": [{"name": "WitnessGrammar", "description": "Module: WitnessGrammar", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in WitnessGrammar", "type": "primitive"}], "tags": ["topology", "storage", "receipt"], "layer": "Documentation", "dependencies": ["FixedPoint", "SigmaGate", "CoulombComplexity", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Witness.md", "title": "Witness", "concepts": [{"name": "Witness", "description": "Module: Witness", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Witness", "type": "primitive"}], "tags": ["topology", "receipt"], "layer": "Documentation", "dependencies": ["Path", "Evolution", "Universality", "ScalarCollapse", "Constitution"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WormholeMetaprobe.md", "title": "WormholeMetaprobe", "concepts": [{"name": "WormholeMetaprobe", "description": "Module: WormholeMetaprobe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in WormholeMetaprobe", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WSMConcrete.md", "title": "WSMConcrete", "concepts": [{"name": "WSMConcrete", "description": "Module: WSMConcrete", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in WSMConcrete", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WSM_WR_EGS_WC.md", "title": "WSM_WR_EGS_WC", "concepts": [{"name": "WSM_WR_EGS_WC", "description": "Module: WSM_WR_EGS_WC", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in WSM_WR_EGS_WC", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/YangMillsCompressionBounds.md", "title": "YangMillsCompressionBounds", "concepts": [{"name": "YangMillsCompressionBounds", "description": "Module: YangMillsCompressionBounds", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in YangMillsCompressionBounds", "type": "primitive"}], "tags": ["topology", "compression"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/YangMillsCompression.md", "title": "YangMillsCompression", "concepts": [{"name": "YangMillsCompression", "description": "Module: YangMillsCompression", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in YangMillsCompression", "type": "primitive"}], "tags": ["topology", "compression"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/YangMillsLattice.md", "title": "YangMillsLattice", "concepts": [{"name": "YangMillsLattice", "description": "Module: YangMillsLattice", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in YangMillsLattice", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/YangMillsLatticeSizing.md", "title": "YangMillsLatticeSizing", "concepts": [{"name": "YangMillsLatticeSizing", "description": "Module: YangMillsLatticeSizing", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in YangMillsLatticeSizing", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/YangMillsPerformance.md", "title": "YangMillsPerformance", "concepts": [{"name": "YangMillsPerformance", "description": "Module: YangMillsPerformance", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in YangMillsPerformance", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"}
{"file":"claims.yaml","title":"Research Stack Mathematical Claim Registry","concepts":[{"name":"Claim Registry","description":"Single source of truth for tracked mathematical claims and their rigor level, validated against claims-registry.schema.json","type":"protocol"},{"name":"Claim Status Ladder","description":"Four-tier rigor: conjecture → verified-by-ai → formally-proven → published","type":"definition"},{"name":"prime-gap-entropy-collapse","description":"Claim that the prime-gap entropy-collapse detector rarely survives the corrected K=21 selective braid threshold","type":"theorem"},{"name":"DeepSeek Review Receipt","description":"Machine-readable attestation of LLM review with prompt hash, answer hash, model, and token usage","type":"receipt"},{"name":"Math-First Contract","description":"Every math claim must be backed by Lean proof or DeepSeek review receipt before promotion","type":"gate"}],"tags":["governance","claims","verification","lean","deepseek","math-first"],"layer":"governance","dependencies":["claims-registry.schema.json","deepseek-review-receipt.schema.json","EntropyCollapseDetector.lean"],"summary":"Tracks every mathematical claim in the stack with its rigor level, Lean proof reference, and DeepSeek review receipts. Validated by CI against the claims-registry JSON Schema."}
{"file":"6-Documentation/docs/VOCABULARY_LOCK.md","title":"Vocabulary Lock: Sovereign Stack / Bodega Kernel","concepts":[{"name":"Equation Forest","description":"A DAG of mathematical models and their dependencies (Semantics.Forest)","type":"definition"},{"name":"F01–F12","description":"12 foundation kernel signatures including Shannon, Carnot, Landauer (Semantics.Foundations)","type":"definition"},{"name":"DIAT","description":"Dynamic Integer-Address Transform — shell coordinate transform (Semantics.DIAT)","type":"definition"},{"name":"S3C","description":"Shell/Topological Codec for energy cell quantization (Semantics.S3C)","type":"definition"},{"name":"AVMR","description":"Adaptive Vector Manifest Roll-up — hierarchical summary (Semantics.AVMR)","type":"definition"},{"name":"NUVMAP","description":"Non-Uniform Variable Mapping — 2D spectral projection (Semantics.NUVMATH)","type":"definition"},{"name":"FNWH","description":"Formal Non-Wave Harmonic — the underlying framework (Semantics.FNWH)","type":"definition"},{"name":"PIST","description":"Perfectly Imperfect Square Theory — witness/audit surface (Semantics.PIST)","type":"definition"},{"name":"FAMM","description":"Frustration-Aware Manifold Management — memory/route manager (Semantics.FAMM)","type":"definition"},{"name":"Genome18","description":"18-bit address space with 6 bins × 3 bits (Semantics.Genome18)","type":"definition"},{"name":"Q16.16 Fixed Point","description":"All arithmetic in Lean and Verilog must match bit-exactly using Q16_16","type":"invariant"},{"name":"S3C Shells","description":"Energy cells must be quantized to n² + m integer shells before routing","type":"invariant"},{"name":"TREE(3) Bound","description":"All recursive lookups in BHOCS must carry a witness of finiteness","type":"invariant"},{"name":"PIST Witness","description":"Witness format: {event_id, proof_hash, signature, energy_cell} with attest(witness) → bool","type":"protocol"},{"name":"NUVMAP Encoding","description":"Spectral state vector → U/V coordinates → Q^T·A projection with ε_tol failure mode","type":"algorithm"}],"tags":["vocabulary","definitions","core-terms","formal-verification","fixed-point","architecture"],"layer":"governance","dependencies":["Semantics.Forest","Semantics.Foundations","Semantics.DIAT","Semantics.S3C","Semantics.NUVMATH","Semantics.PIST","Semantics.FAMM","Semantics.Q16_16"],"summary":"Canonical vocabulary lock defining 10 core terms (Equation Forest through Genome18), interface signatures for NUVMAP and PIST, and implementation constraints including Q16.16 bit-exactness and TREE(3) finiteness witnesses."}
{"file":"REBASE_RULES.md","title":"REBASE RULES — Research Stack Agent / Rules Manifest","concepts":[{"name":"Rebase Seed","description":"Port contracts and rituals, not state — the principle for standing up new project maps","type":"protocol"},{"name":"Core Operating Contracts","description":"The 8 AGENTS.md files that are the source of truth for every agent, skill, and editor hook","type":"architecture"},{"name":"Programming Choice Flow","description":"Decision tree: Lean owns decisions, Python owns I/O, AVMIsa.Emit is sole receipt boundary","type":"protocol"},{"name":"ContextStream-First Workflow","description":"Every editor must call init() then context() before any file search or edit","type":"protocol"},{"name":"Cornfield Recovery Manifest","description":"19 archived concepts recoverable via explicit RECOVER LEGACY INFORMATION trigger","type":"architecture"},{"name":"SilverSight Port","description":"Port manifest for cornfield concepts: P0 critical (Φ universal field equation) through LOW priority","type":"protocol"},{"name":"Minimal Rebase Checklist","description":"9-step checklist for standing up a new project map from contracts","type":"recipe"},{"name":"MCP Server Inventory","description":"11 MCP servers: contextstream, filesystem, git, fetch, lean, remote-lean-proof, sympy, wolfram-alpha, aws, github, headroom","type":"definition"},{"name":"Skills Inventory","description":"8 must-port skills: lean-proof, contextstream-workflow, research-stack-workflow, headroom, cad, urdf, rrc-compile, rrc-scale-analysis","type":"definition"},{"name":"Do-Not-Port List","description":"Items explicitly dropped: consolidation manifests, runtime DBs, stale audits, copilot state block","type":"gate"}],"tags":["governance","rebase","contracts","architecture","workflow","cornfield"],"layer":"governance","dependencies":["AGENTS.md","Semantics.AVMIsa.Emit","ContextStream","lean-proof"],"summary":"Defines what to port when starting a fresh project map: core contracts, editor configs, skills, MCP servers. Includes cornfield recovery manifest with 19 archived concepts and their port priorities."}
{"file":"CITATION.cff","title":"Research Stack (OTOM)","concepts":[{"name":"Research Stack","description":"Formal-methods and compression research repository for integer-routed symbolic systems, Omindirection logogram atoms, and the Rainbow Raccoon Compiler","type":"definition"},{"name":"OTOM","description":"The overarching framework name for the Research Stack project","type":"definition"},{"name":"STARS","description":"STAbility-driven Recurrent Scaling for looped models — regularizes spectral radius of Jacobian","type":"algorithm"},{"name":"Differentiable IPM","description":"Differentiable primal-dual interior-point method with softplus retraction for fixed-point arithmetic","type":"algorithm"},{"name":"Polydisperse Hard Spheres","description":"Close packing, fractionation, and terminal polydispersity ~14% — maps to 1/7 Sidon threshold","type":"definition"},{"name":"Vortex-Glass Phase","description":"Granular superconductor vortex-glass theory with Bragg-glass to vortex-glass transitions","type":"definition"},{"name":"BWT Compressiveness","description":"Burrows-Wheeler transform and bijective BWT compressiveness analysis","type":"algorithm"},{"name":"Poincaré Embeddings","description":"Hyperbolic Poincaré ball embeddings for hierarchical representation learning","type":"algorithm"},{"name":"ANS","description":"Asymmetric Numeral Systems — single-state entropy coding alternative to arithmetic coding","type":"algorithm"},{"name":"MDL Principle","description":"Minimum Description Length — model selection via code-length minimization","type":"definition"},{"name":"Information Bottleneck","description":"Deep learning and the information bottleneck principle for neural networks","type":"definition"},{"name":"Zipf's Law","description":"Word frequency law in natural language — critical review of theories","type":"definition"},{"name":"Hachimoji DNA","description":"8-base synthetic DNA with 3 bits/base — formalized in ExpandedGeneticAlphabetProbe.lean","type":"definition"},{"name":"Language Modeling Is Compression","description":"Chinchilla 70B compresses ImageNet to 43.4% — LLMs as compressors","type":"definition"},{"name":"AngrySphinx","description":"Lattice-based PQC primitive with exponential energy asymmetry and NaN boundary","type":"primitive"}],"tags":["citations","references","compression","information-theory","superconductor","polydispersity","PQC","genetics","LLM","manifolds"],"layer":"governance","dependencies":[],"summary":"CFF citation manifest for the Research Stack project. References 50+ papers across hard-sphere packing, vortex-glass superconductors, information theory, compression (ANS/BWT/MDL), genetic code, PQC, and LLM geometry."}
{"file":"6-Documentation/docs/provenance/ALPHAFOLD_BULK_STRUCTURE_PRIOR_SOURCES.cff","title":"AlphaFold Bulk Structure Database Prior Sources","concepts":[{"name":"AlphaFold Protein Structure Database","description":"EMBL-EBI/Google DeepMind predicted protein structure corpus — external source, not vendored","type":"definition"},{"name":"AlphaFold Bulk Download","description":"FTP bulk archive source for explicit receipted ingest only","type":"protocol"},{"name":"AlphaFold Paper","description":"Jumper et al. 2021 Nature — required citation for UniProt AlphaFold predictions","type":"definition"}],"tags":["provenance","alphafold","protein-structure","biology","external-source"],"layer":"provenance","dependencies":[],"summary":"Provenance manifest for AlphaFold-derived structure priors. Cites the AlphaFold DB downloads, FTP area, and original Nature 2021 paper. Data is not vendored."}
{"file":"6-Documentation/docs/provenance/DNA_CODEC_FILTER_SOURCES.cff","title":"DNA Codec Filter Sources","concepts":[{"name":"DNA Codec Filter","description":"Local codec using analogy-bound synthetic binding score — not biological sequence data","type":"definition"},{"name":"seqLogo","description":"Bioconductor sequence-logo information-content reference surface","type":"tool"},{"name":"Nearest-Neighbor Thermodynamics","description":"SantaLucia unified DNA thermodynamics — reference surface only","type":"definition"},{"name":"DNA Replication Fidelity","description":"Layered fidelity and proofreading framing — receipt-layer analogy only","type":"definition"},{"name":"Drake-Rule Mutation Rate","description":"Per-token receipt-budget analogy from mutation-rate scaling","type":"definition"},{"name":"Worm-like Chain","description":"Replay-curvature analogy reference — no polymer simulation claimed","type":"definition"}],"tags":["provenance","DNA","codec","biology","analogy","thermodynamics"],"layer":"provenance","dependencies":[],"summary":"Provenance manifest for the DNA codec filter. Cites seqLogo, nearest-neighbor thermodynamics, replication fidelity, and worm-like chain as reference surfaces. All biological references are analogy-bound only."}
{"file":"6-Documentation/docs/provenance/KAGGLE_DENSITY_PRIOR_SOURCES.cff","title":"Kaggle Algorithm Density Marker Prior Sources","concepts":[{"name":"Ubiquant Dtype Reduction","description":"Kaggle notebook for chunked dtype reduction — external design-prior surface only","type":"definition"},{"name":"Ubiquant Parquet Loading","description":"Rob Mulla's Parquet columnar loading pattern — external design-prior","type":"definition"},{"name":"Santa 2022 Pixel Travel Map","description":"Kaggle pixel travel map notebook — external design-prior","type":"definition"},{"name":"Mercedes Autoencoder Compression","description":"Neural autoencoder feature compression — external design-prior","type":"definition"},{"name":"AIMO3 Speculative Decoding","description":"Speculative decoding and context-compression appliance — external design-prior","type":"definition"}],"tags":["provenance","kaggle","density-prior","compression","autoencoder"],"layer":"provenance","dependencies":[],"summary":"Provenance manifest for Kaggle-derived density-prior notes. Cites 5 Kaggle notebooks as external design-prior surfaces. No code vendored; licenses must be verified before copying."}
{"file":"6-Documentation/docs/provenance/LANGUAGE_MATH_MODEL_SOURCES.cff","title":"Language, Mathematics, Genetics, and Information Theory Paper Sources","concepts":[{"name":"Hachimoji DNA","description":"8-base synthetic DNA with 3 bits/base (Hoshika 2019 Science)","type":"definition"},{"name":"12-Letter Supernumerary DNA","description":"12-letter DNA as canonical structural maximum (Kawabe 2023 Nature Comms)","type":"definition"},{"name":"Genetic Code Optimality","description":"Standard genetic code ~10^6 times better than random at error minimization (Freeland & Hurst 1998)","type":"definition"},{"name":"DNA Information Storage","description":"Church 2012: 5.27-megabit book in DNA; Goldman 2013: 739KB with 100% reconstruction","type":"definition"},{"name":"Information Bottleneck","description":"Tishby & Zaslavsky 2015: information bottleneck principle applied to deep neural networks","type":"definition"},{"name":"ANS Optimality","description":"Proves ANS optimality for distributions described by natural powers of 1/2 (Pieprzyk 2023)","type":"theorem"},{"name":"Compound PCFG","description":"Compound probabilistic context-free grammars for grammar induction (Kim 2019 ACL)","type":"algorithm"},{"name":"MDL Principle","description":"Minimum Description Length — model selection via code-length minimization (Grunwald 2020)","type":"definition"},{"name":"Language Modeling Is Compression","description":"Chinchilla 70B compresses ImageNet to 43.4% (Deletang 2024 ICLR)","type":"definition"},{"name":"Poincaré Embeddings","description":"Hyperbolic ball embeddings for hierarchical representations (Nickel & Kiela 2017 NeurIPS)","type":"algorithm"},{"name":"Universal Geometry of Embeddings","description":"Universal latent representation translation across embedding spaces (Jha 2025)","type":"definition"},{"name":"Hyperbolic LLMs","description":"Survey of hyperbolic geometry in LLMs (Patil 2025)","type":"definition"},{"name":"BWT Compressiveness","description":"BWT and bijective BWT compressiveness analysis (Bannai 2024)","type":"algorithm"},{"name":"CAT Transformer","description":"Compress & Attend Transformer for controllably efficient language models (Prakash 2025)","type":"algorithm"}],"tags":["provenance","information-theory","compression","genetics","DNA","grammar","MDL","LLM","manifolds","hyperbolic"],"layer":"provenance","dependencies":[],"summary":"Comprehensive provenance manifest covering 25+ papers on expanded genetic alphabets, DNA information storage, information bottleneck, ANS compression, grammar induction, MDL, language modeling as compression, and hyperbolic geometry."}
{"file":"6-Documentation/docs/provenance/NSPACE_BULK_DATASET_ROUTE_SOURCES.cff","title":"N-Space Bulk Dataset Route Sources","concepts":[{"name":"Gaia DR3","description":"ESA astronomy dataset for galactic phase-space density matrices — external source","type":"definition"},{"name":"ERA5 Reanalysis","description":"ECMWF climate reanalysis for spatio-temporal grid manifolds — external source","type":"definition"},{"name":"LAION-5B","description":"Semantic embedding and image-text metadata source — external, license-sensitive","type":"definition"},{"name":"AlphaFold DB","description":"Predicted protein structure source (CC-BY-4.0) — external","type":"definition"},{"name":"NCBI/GenBank","description":"Biological sequence sources in ASN.1 and GenBank flatfile formats — external","type":"definition"},{"name":"The Well","description":"Polymathic AI physics-dynamics source for uniform-grid scalar/vector/tensor fields — external","type":"definition"},{"name":"PDEBench","description":"Canonical PDE benchmark surface — external, requires citation verification","type":"definition"},{"name":"MeshGraphNets","description":"Google DeepMind irregular-mesh simulation for graph-topology route tests — external","type":"definition"},{"name":"SRBench","description":"Symbolic-regression benchmark datasets including black-box and ground-truth tasks — external","type":"definition"},{"name":"DLMF/Feynman SR","description":"NIST special-function and physics-equation reference prior — external","type":"definition"},{"name":"LeanDojo/mathlib","description":"Formal theorem-proving and mathlib extraction prior — local Lean replay is proof boundary","type":"definition"},{"name":"NuminaMath","description":"Mathematical reasoning dataset/model collection — proposal-generation curriculum only","type":"definition"}],"tags":["provenance","datasets","astronomy","climate","biology","PDE","symbolic-regression","formal-verification"],"layer":"provenance","dependencies":[],"summary":"Provenance manifest for 12 external bulk datasets used as route priors: Gaia, ERA5, LAION-5B, AlphaFold, NCBI, The Well, PDEBench, MeshGraphNets, SRBench, DLMF, LeanDojo, NuminaMath. None vendored."}
{"file":"6-Documentation/docs/provenance/PRETHINKER_COMPUTATIONAL_EPISTEMICS_SOURCES.cff","title":"Prethinker Computational Epistemics Prior Sources","concepts":[{"name":"Prethinker","description":"External architecture source for governed semantic intake — LLM proposals, deterministic admission, semantic lenses","type":"definition"},{"name":"Semantic Instrument","description":"Prethinker's semantic instrument specification — reference surface only","type":"spec"},{"name":"Multi-Pass Semantic Compiler","description":"Prethinker's multi-pass compiler architecture — reference surface only","type":"spec"},{"name":"Semantic IR Mapper","description":"Prethinker's IR mapper specification — reference surface only","type":"spec"},{"name":"Current Harness Instrument","description":"Prethinker's harness instrument spec — reference surface only","type":"spec"},{"name":"Selector Guards","description":"Deterministic admission guards from Prethinker architecture","type":"gate"},{"name":"Semantic Lenses","description":"Governing lenses for semantic intake from Prethinker","type":"definition"}],"tags":["provenance","prethinker","computational-epistemics","semantic-intake","admission"],"layer":"provenance","dependencies":[],"summary":"Provenance manifest for the Prethinker computational-epistemics prior. Treats Prethinker as architecture source for governed semantic intake: LLM proposals, deterministic mapper admission, semantic lenses, and selector guards. License unknown."}
{"file":"6-Documentation/docs/provenance/WEATHER_SYSTEMS_MATH_PRIOR_SOURCES.cff","title":"Weather Systems Math Prior Sources","concepts":[{"name":"IFS Documentation","description":"ECMWF Integrated Forecasting System — primitive-equation dynamics reference surface","type":"definition"},{"name":"ERA5","description":"ECMWF reanalysis and assimilation route priors — external reference surface","type":"definition"},{"name":"Numerical Weather Prediction","description":"NOAA NWP data-family routing reference surface","type":"definition"},{"name":"FV3","description":"NOAA finite-volume cubed-sphere dynamical core — conservation and layered dynamics reference","type":"definition"},{"name":"Primitive Equations","description":"Atmospheric primitive-equation dynamics used as math prior framing","type":"definition"}],"tags":["provenance","weather","atmospheric-model","NWP","FV3","ECMWF"],"layer":"provenance","dependencies":[],"summary":"Provenance manifest for weather systems math prior. Cites IFS, ERA5, NWP, and FV3 as reference surfaces for atmospheric modeling. Only tiny synthetic fixtures used locally."}
{"file":"shared-data/schemas/claims-registry.schema.json","title":"Research Stack Mathematical Claim Registry Schema","concepts":[{"name":"Claims Registry Schema","description":"JSON Schema for claims.yaml — tracks rigor level of every mathematical claim","type":"schema"},{"name":"Claim Status Enum","description":"Four-tier status: conjecture, verified-by-ai, formally-proven, published","type":"definition"},{"name":"Review Receipt Requirement","description":"verified-by-ai claims must have at least one review_receipts entry","type":"gate"},{"name":"Lean Source Requirement","description":"formally-proven claims must have a lean source reference","type":"gate"},{"name":"Kebab-Case ID Pattern","description":"Claim IDs must match ^[a-z0-9][a-z0-9-]*$ — stable across renames","type":"invariant"}],"tags":["schema","governance","claims","json-schema","verification"],"layer":"governance","dependencies":[],"summary":"JSON Schema validating claims.yaml. Enforces four-tier rigor ladder, requires review receipts for AI-verified claims, Lean source for formally proven claims, and kebab-case stable IDs."}
{"file":"shared-data/schemas/deepseek-review-receipt.schema.json","title":"DeepSeek Review Receipt Schema","concepts":[{"name":"DeepSeek Review Receipt Schema","description":"JSON Schema for Ollama-compatible DeepSeek review receipts with SHA-256 pinning","type":"schema"},{"name":"Primary Receipt","description":"First receipt pinning context files used to build the review prompt","type":"receipt"},{"name":"Continuation Receipt","description":"Receipt for truncated reviews continued by separate requests","type":"receipt"},{"name":"SHA-256 Pinning","description":"prompt_sha256 and answer_sha256 fields enable re-validation without re-running the model","type":"protocol"},{"name":"Context Files","description":"Array of repo-relative paths to every file that participated in the review prompt","type":"definition"},{"name":"Token Usage","description":"prompt_tokens, completion_tokens, total_tokens as reported by endpoint","type":"definition"}],"tags":["schema","receipt","deepseek","ollama","review","sha256","verification"],"layer":"governance","dependencies":[],"summary":"JSON Schema for DeepSeek review receipts. Supports primary and continuation receipt types with SHA-256 pinning of prompts and answers, context file tracking, and token usage."}
{"file":"shared-data/schemas/famm_16d_chaos_game_receipt.schema.json","title":"FAMM 16D Chaos Game Field Shrinker Receipt","concepts":[{"name":"16D Chaos Game Field Shrinker","description":"Basis layer for 16-dimensional chaos game field shrinking with orbit hashing","type":"algorithm"},{"name":"Chaos Game Orbit","description":"Iterated function system orbit in 16D with burn-in period and SHA-256 hash","type":"receipt"},{"name":"Projection Axes","description":"2-element array selecting which of 16 dimensions to project onto","type":"definition"},{"name":"No-Drift Boundary","description":"String field ensuring receipt reproducibility — no numerical drift allowed","type":"invariant"},{"name":"Route Recommendations","description":"Array of routing suggestions derived from chaos game convergence","type":"receipt"}],"tags":["schema","famm","chaos-game","16d","orbit","projection","receipt"],"layer":"core-formalism","dependencies":["FAMM","NUVMAP"],"summary":"Schema for FAMM 16D chaos game field shrinker receipts. Tracks orbit SHA-256, projection axes, anchor counts, final state, and route recommendations with no-drift boundary."}
{"file":"shared-data/schemas/famm_adversarial_duals_receipt.schema.json","title":"FAMM Adversarial Duals Receipt","concepts":[{"name":"Anti-FAMM","description":"Adversarial dual testing FAMM receipt aliasing and routing","type":"protocol"},{"name":"Anti-BraidStorm","description":"Adversarial dual testing Yang-Baxter invariance and braid-order aliasing","type":"protocol"},{"name":"Warden Decision","description":"String field encoding the Warden clock domain's adversarial verdict","type":"gate"},{"name":"NUVMAP Projection","description":"NUVMAP object embedded in adversarial duals receipt","type":"receipt"}],"tags":["schema","famm","adversarial","anti-famm","anti-braidstorm","warden","receipt"],"layer":"core-formalism","dependencies":["FAMM","Anti-BraidStorm","Warden","NUVMAP"],"summary":"Schema for adversarial duals receipts. Tests both Anti-FAMM (receipt aliasing) and Anti-BraidStorm (Yang-Baxter invariance) with Warden decision gate."}
{"file":"shared-data/schemas/famm_autonomous_speedrun_harness_receipt.schema.json","title":"FAMM Autonomous Speedrun Harness Receipt","concepts":[{"name":"Autonomous Speedrun Harness","description":"Harness for autonomous scored experiments with source pattern tracking","type":"algorithm"},{"name":"Scored Experiments","description":"Array of experiment results scored by the harness","type":"receipt"},{"name":"Source Pattern","description":"Optional string identifying the generation pattern for the speedrun","type":"definition"}],"tags":["schema","famm","speedrun","harness","autonomous","experiment","receipt"],"layer":"core-formalism","dependencies":["FAMM","NUVMAP"],"summary":"Schema for autonomous speedrun harness receipts. Tracks scored experiments, harness configuration, and source patterns with NUVMAP projection."}
{"file":"shared-data/schemas/famm_bjw_geodesic_cleanup_receipt.schema.json","title":"FAMM Builder-Judge-Warden Geodesic Cleanup Receipt","concepts":[{"name":"BJW Geodesic Cleanup","description":"Builder-Judge-Warden three-clock cleanup with accepted geodesic and rejected moves","type":"protocol"},{"name":"Accepted Geodesic","description":"Array of accepted cleanup moves along the geodesic path","type":"receipt"},{"name":"Rejected Moves","description":"Array of moves rejected during BJW cleanup","type":"receipt"},{"name":"Source Object Hash","description":"SHA-256 of the object before cleanup","type":"receipt"},{"name":"Final Object Hash","description":"SHA-256 of the object after cleanup","type":"receipt"},{"name":"Exact Receipt","description":"Embedded exact receipt for the cleanup operation","type":"receipt"}],"tags":["schema","famm","bjw","geodesic","cleanup","builder-judge-warden","receipt"],"layer":"core-formalism","dependencies":["FAMM","Builder","Judge","Warden"],"summary":"Schema for BJW geodesic cleanup receipts. Records accepted geodesic path, rejected moves, source/final object hashes, and exact receipt with cleanup metrics."}
{"file":"shared-data/schemas/famm_braidstorm_sidon_crossing_receipt.schema.json","title":"FAMM BraidStorm Sidon Crossing Receipt","concepts":[{"name":"BraidStorm Sidon Crossing","description":"8-strand braid topology with Sidon label assignment for collision-free crossing addresses","type":"algorithm"},{"name":"Sidon Labels","description":"Powers of 2 (1,2,4,8,16,32,64,128) giving collision-free pairwise sums","type":"primitive"},{"name":"Address Budget","description":"Maximum label value available for Sidon set construction","type":"definition"},{"name":"Address Mode","description":"String specifying how addresses are assigned (e.g., powers_of_2)","type":"definition"},{"name":"Capacity","description":"Object tracking Sidon slack and label utilization","type":"receipt"},{"name":"Validation","description":"Object with crossing validation results","type":"receipt"}],"tags":["schema","famm","braidstorm","sidon","crossing","labels","receipt"],"layer":"core-formalism","dependencies":["FAMM","BraidStorm","Sidon","NUVMAP"],"summary":"Schema for BraidStorm Sidon crossing receipts. Tracks strand count, address budget, Sidon labels (powers of 2), capacity, and crossing validation with NUVMAP projection."}
{"file":"shared-data/schemas/famm_golden_braid_centering_receipt.schema.json","title":"FAMM Golden Braid Centering Receipt","concepts":[{"name":"Golden Braid Centering","description":"Contraction toward eigensolid using φ⁻¹ = 0x00009E70 golden ratio","type":"algorithm"},{"name":"Golden Ratio φ","description":"φ = (1+√5)/2 used for strand contraction centering","type":"primitive"},{"name":"Inverse Phi","description":"φ⁻¹ = 0x00009E70 in Q16_16 fixed-point representation","type":"primitive"},{"name":"Center","description":"Array of center coordinates for the braid contraction","type":"definition"},{"name":"Strand Receipts","description":"Array of per-strand convergence receipts","type":"receipt"},{"name":"Multi-Strand","description":"Object tracking multi-strand convergence state","type":"receipt"}],"tags":["schema","famm","golden-ratio","braid","centering","eigensolid","receipt"],"layer":"core-formalism","dependencies":["FAMM","Golden Ratio","BraidStorm"],"summary":"Schema for golden braid centering receipts. Tracks φ and φ⁻¹ in Q16_16, center coordinates, per-strand convergence, and multi-strand state for eigensolid contraction."}
{"file":"shared-data/schemas/famm_hessian_curvature_receipt.schema.json","title":"FAMM Hessian Curvature Receipt","concepts":[{"name":"Hessian Curvature","description":"Lanczos-based Hessian eigenvalue computation for curvature analysis","type":"algorithm"},{"name":"Lanczos Iteration","description":"K-step Lanczos algorithm computing top-k eigenvalues and Ritz residuals","type":"algorithm"},{"name":"Spectral Density","description":"Gaussian-broadened spectral density estimate from eigenvalues","type":"receipt"},{"name":"Trace Estimate","description":"Stochastic trace estimate with standard error","type":"receipt"},{"name":"Route Decision","description":"Routing decision derived from Hessian spectral analysis","type":"receipt"},{"name":"Basis Layer HESSIAN_EIGEN","description":"Constant identifying this as a Hessian eigenvalue basis layer","type":"definition"}],"tags":["schema","famm","hessian","curvature","lanczos","eigenvalue","spectral-density","receipt"],"layer":"core-formalism","dependencies":["FAMM","Lanczos"],"summary":"Schema for Hessian curvature receipts. Records Lanczos eigenvalue computation, spectral density, trace estimates, and route decisions with no-drift boundary."}
{"file":"shared-data/schemas/famm_logogram_chirality_witness.schema.json","title":"FAMM Logogram Chirality Witness","concepts":[{"name":"Logogram Chirality","description":"Chirality witness for Omindirection logogram atoms with direction, handedness, and phase","type":"primitive"},{"name":"Chirality Witness","description":"Object with direction, handedness, phase, placement, and mode fields","type":"receipt"},{"name":"Residual Policy","description":"String policy governing residual handling for the logogram","type":"gate"},{"name":"Benefit Gate","description":"Object gate determining if the logogram chirality provides benefit","type":"gate"},{"name":"Symbol ID","description":"Unique identifier for the logogram symbol","type":"definition"},{"name":"Payload Hash","description":"SHA-256 hash of the logogram payload","type":"receipt"}],"tags":["schema","famm","logogram","chirality","omindirection","witness","receipt"],"layer":"core-formalism","dependencies":["FAMM","Omindirection"],"summary":"Schema for logogram chirality witnesses. Captures chirality direction/handedness/phase for Omindirection logogram atoms with residual policy and benefit gate."}
{"file":"shared-data/schemas/famm_markovjunior_16d_shim_receipt.schema.json","title":"FAMM MarkovJunior 16D Shim Receipt","concepts":[{"name":"MarkovJunior 16D Shim","description":"MarkovJunior-style rewrite rules applied to 16D space with anchor points","type":"algorithm"},{"name":"Rewrite Rules","description":"Array of rule objects for the MarkovJunior grammar","type":"definition"},{"name":"Anchors","description":"Array of anchor point objects in 16D space","type":"definition"},{"name":"NUVMAP Projection","description":"NUVMAP object embedded in the shim receipt","type":"receipt"}],"tags":["schema","famm","markovjunior","16d","rewrite-rules","grammar","receipt"],"layer":"core-formalism","dependencies":["FAMM","MarkovJunior","NUVMAP"],"summary":"Schema for MarkovJunior 16D shim receipts. Records rewrite rules, anchor points in 16D space, and NUVMAP projection for grammar-based generation."}
{"file":"shared-data/schemas/famm_nuvmap_delta_dag_receipt.schema.json","title":"FAMM NUVMAP Delta-DAG Search Receipt","concepts":[{"name":"NUVMAP Delta-DAG Search","description":"Delta-stream DAG search on NUVMAP projections with compression estimates","type":"algorithm"},{"name":"Delta Stream","description":"SHA-256 of the delta-encoded stream for the DAG search","type":"receipt"},{"name":"Compression Estimate","description":"Object with compression ratio and method estimates","type":"receipt"},{"name":"DAG","description":"Directed acyclic graph object from the search","type":"receipt"},{"name":"Problem Hash","description":"SHA-256 of the problem instance","type":"receipt"},{"name":"Route Rule Hash","description":"SHA-256 of the routing rule applied","type":"receipt"},{"name":"Projection Level","description":"String identifying the NUVMAP projection level used","type":"definition"}],"tags":["schema","famm","nuvmap","delta-dag","search","compression","receipt"],"layer":"core-formalism","dependencies":["FAMM","NUVMAP","DAG"],"summary":"Schema for NUVMAP delta-DAG search receipts. Tracks problem/route-rule hashes, projection level, solution, compression estimates, and delta stream SHA-256."}
{"file":"shared-data/schemas/famm_plasma_chiral_drag_witness_receipt.schema.json","title":"FAMM Plasma Chiral Drag Witness Receipt","concepts":[{"name":"Plasma Chiral Drag","description":"Chiral drag witness from plasma model with source model, inputs, and derived quantities","type":"receipt"},{"name":"Source Model","description":"String identifying the plasma model used (e.g., magneto-plasma)","type":"definition"},{"name":"Derived Quantities","description":"Object with derived physical quantities from the plasma simulation","type":"receipt"},{"name":"Packet","description":"Object with the encoded packet representation","type":"receipt"},{"name":"FAMM State","description":"FAMM object embedded in the plasma witness receipt","type":"receipt"}],"tags":["schema","famm","plasma","chiral-drag","physics","witness","receipt"],"layer":"core-formalism","dependencies":["FAMM","MagnetoPlasma"],"summary":"Schema for plasma chiral drag witness receipts. Records source plasma model, input parameters, derived quantities, FAMM state, and encoded packet."}
{"file":"shared-data/schemas/famm_semantic_mass_route_plow_receipt.schema.json","title":"FAMM Semantic Mass Route Plow Receipt","concepts":[{"name":"Semantic Mass Route Plow","description":"Route plowing through semantic mass with z-domain analysis and ranked routes","type":"algorithm"},{"name":"Basis Layers","description":"Array of basis layer identifiers contributing to semantic mass","type":"definition"},{"name":"Mass Stream","description":"Object with the semantic mass stream data","type":"receipt"},{"name":"Z-Domain","description":"Object with z-transform domain analysis of the mass stream","type":"receipt"},{"name":"Ranked Routes","description":"Array of route objects ranked by semantic mass","type":"receipt"},{"name":"Closure Recommendation","description":"Object with closure recommendation based on mass analysis","type":"gate"},{"name":"Residual Seal","description":"Object sealing the residual after route plowing","type":"receipt"}],"tags":["schema","famm","semantic-mass","route","z-domain","plow","receipt"],"layer":"core-formalism","dependencies":["FAMM","Semantic Mass","NUVMAP"],"summary":"Schema for semantic mass route plow receipts. Records basis layers, mass stream, z-domain analysis, ranked routes, closure recommendation, and residual seal."}
{"file":"shared-data/schemas/famm_semantic_mass_z_receipt.schema.json","title":"FAMM Semantic Mass Z Receipt","concepts":[{"name":"Semantic Mass Z Transform","description":"Z-transform analysis of semantic mass with AR coefficients and pole locations","type":"algorithm"},{"name":"AR Coefficients","description":"Autoregressive model coefficients for the mass sequence","type":"receipt"},{"name":"Poles","description":"Array of pole objects from the z-transform analysis","type":"receipt"},{"name":"Residual","description":"Object with residual analysis after AR fitting","type":"receipt"},{"name":"Route Decision","description":"Routing decision derived from z-domain pole analysis","type":"receipt"},{"name":"Basis Layer MASS_Z_ACCEL","description":"Constant identifying this as a mass z-acceleration basis layer","type":"definition"}],"tags":["schema","famm","semantic-mass","z-transform","AR-model","poles","receipt"],"layer":"core-formalism","dependencies":["FAMM","Semantic Mass"],"summary":"Schema for semantic mass z-transform receipts. Records AR order, coefficients, poles, residual, and route decisions from z-domain analysis of semantic mass streams."}
{"file":"shared-data/schemas/famm_sidon_map_receipt.schema.json","title":"FAMM Sidon Map Receipt","concepts":[{"name":"Sidon Map","description":"Receipt verifying a set is Sidon (all pairwise sums unique)","type":"receipt"},{"name":"Sidon Set","description":"Set of integers where all pairwise sums are distinct","type":"primitive"},{"name":"Pair Sums","description":"Array of pairwise sum objects from the set","type":"receipt"},{"name":"Collisions","description":"Array of collision objects (should be empty for valid Sidon sets)","type":"receipt"},{"name":"Is Sidon","description":"Boolean verification that no pairwise sum collisions exist","type":"gate"}],"tags":["schema","famm","sidon","set-theory","pairwise-sums","verification","receipt"],"layer":"core-formalism","dependencies":["FAMM","Sidon"],"summary":"Schema for Sidon map receipts. Verifies a set has all unique pairwise sums, recording the set, pair sums, collisions, and is_sidon boolean gate."}
{"file":".mcp.json","title":"MCP Server Configuration","concepts":[{"name":"MCP Configuration","description":"Model Context Protocol client configuration for OpenCode in Research Stack","type":"architecture"},{"name":"Filesystem MCP","description":"Read/write proof artifacts, Lean kernels, and receipts","type":"tool"},{"name":"Git MCP","description":"Git history navigation: diff, blame, log","type":"tool"},{"name":"Fetch MCP","description":"HTTP fetch for docs, RFCs, release notes","type":"tool"},{"name":"ContextStream MCP","description":"Persistent memory/context/search with workspace and project IDs","type":"tool"},{"name":"Lean MCP","description":"Lean 4 / Mathlib typecheck bridge via lakefile","type":"tool"},{"name":"Remote Lean Proof MCP","description":"Hermes/OpenCode/Codex proof backend via remote server","type":"tool"},{"name":"SymPy MCP","description":"Symbolic verification of arithmetic claims","type":"tool"},{"name":"Wolfram Alpha MCP","description":"Wolfram Alpha symbolic verification (requires WOLFRAM_APP_ID)","type":"tool"},{"name":"AWS MCP","description":"AWS API access via boto3 credential chain","type":"tool"},{"name":"GitHub MCP","description":"GitHub API via Copilot endpoint with PAT auth","type":"tool"},{"name":"Headroom MCP","description":"Headroom token/context compression proxy","type":"tool"},{"name":"Google Drive MCP","description":"Google Drive search, read, list files, calendar, docs, sheets","type":"tool"}],"tags":["config","mcp","tooling","contextstream","lean","wolfram","headroom"],"layer":"infrastructure","dependencies":[],"summary":"MCP client configuration defining 12 servers: filesystem, git, fetch, contextstream, lean, remote-lean-proof, sympy, wolfram-alpha, aws, github, headroom, and google-drive."}
{"file":"pyproject.toml","title":"Research Stack Python Project Configuration","concepts":[{"name":"Research Stack Python Project","description":"Python project definition with optional dependency groups for quantum, GPU, compute, DB, and pipeline","type":"architecture"},{"name":"Quantum Dependencies","description":"perceval-quandela, quimb, opt_einsum, cirq, qiskit, qiskit-aer","type":"definition"},{"name":"GPU Dependencies","description":"wgpu for WebGPU compute","type":"definition"},{"name":"Compute Dependencies","description":"ray, networkx, scipy, numpy for distributed and numerical compute","type":"definition"},{"name":"DB Dependencies","description":"psycopg2, boto3, gremlinpython, pymysql for database access","type":"definition"},{"name":"Pipeline Dependencies","description":"reedsolo, cryptography, highspy, requests, pandas, xxhash, pyserial for data pipeline","type":"definition"}],"tags":["config","python","dependencies","quantum","gpu","compute","database","pipeline"],"layer":"infrastructure","dependencies":[],"summary":"Python project configuration with 5 optional dependency groups: quantum (Perceval/Cirq/Qiskit), GPU (wgpu), compute (Ray/NetworkX/SciPy), DB (PostgreSQL/Gremlin), and pipeline (Reed-Solomon/HiGHS)."}
{"file":"flake.nix","title":"Research Stack Nix Flake — Dev Container + NixOS Topology","concepts":[{"name":"Nix Flake","description":"Nix flake defining dev-container image and NixOS topology for Research Stack","type":"architecture"},{"name":"Dev Container Image","description":"Layered OCI image (research-stack-otom:latest) with Python, Lean, R, Sage, LaTeX, CAD tools","type":"architecture"},{"name":"Python Environment","description":"Python 3.11 with 40+ packages: AWS, PostgreSQL, FastAPI, BioPython, NetworkX, NumPy, SciPy, SymPy, Z3, Pandas, Polars, scikit-learn","type":"definition"},{"name":"R Environment","description":"R with tidyverse, ggplot2, MASS, survival, knitr","type":"definition"},{"name":"Dev Packages","description":"git, bash, ripgrep, jq, Node.js 20, elan (Lean 4), PostgreSQL 16, gnuplot, maxima, octave, sage, typst, texliveFull","type":"definition"},{"name":"Researcher User","description":"Non-root user (UID 1000) with home at /home/researcher","type":"definition"},{"name":"NixOS 24.11","description":"Pinned nixpkgs channel for reproducible builds","type":"definition"}],"tags":["config","nix","devcontainer","OCI","python","lean","R","sage","latex","reproducibility"],"layer":"infrastructure","dependencies":[],"summary":"Nix flake building a layered OCI dev container with Python 3.11 (40+ packages), Lean 4 (elan), R (tidyverse), SageMath, LaTeX, gnuplot, and maxima. Defines researcher user and reproducible PATH."}
{"file":"Containerfile","title":"Research Stack Containerfile (Alpine)","concepts":[{"name":"Alpine Container","description":"Lightweight Alpine 3.19 container with bash, build-base, Node.js, Python 3","type":"architecture"},{"name":"UV Package Manager","description":"uv installed via pipx for fast Python package management","type":"tool"},{"name":"Researcher User","description":"Non-root user (UID 1000) created with adduser","type":"definition"},{"name":"Python Venv","description":"UV-managed Python 3.11.15 venv with biopython, networkx, pycryptodome, zstandard, z3-solver, PyWavelets","type":"definition"}],"tags":["config","container","alpine","python","uv","devcontainer"],"layer":"infrastructure","dependencies":[],"summary":"Alpine-based Containerfile for Research Stack. Installs bash, Node.js, Python 3, uv, creates researcher user, and sets up Python 3.11.15 venv with scientific packages."}
{"file":".pre-commit-config.yaml","title":"Research Stack Pre-Commit Configuration","concepts":[{"name":"Pre-Commit Hooks","description":"Math-first guardrails running on every commit: JSON/YAML validation, private key detection, schema validation","type":"gate"},{"name":"DeepSeek Receipt Schema Validation","description":"Validates *.receipt.json against deepseek-review-receipt.schema.json","type":"gate"},{"name":"Claims Registry Schema Validation","description":"Validates claims.yaml against claims-registry.schema.json and checks repo-relative paths exist","type":"gate"},{"name":"Receipt-Required-for-Math-Content","description":"Requires DeepSeek receipt or Lean proof when math-track files are committed","type":"gate"},{"name":"Math-First Contract Enforcement","description":"Commit-time enforcement that math content has backing evidence","type":"protocol"},{"name":"Detect Private Key","description":"Built-in hook preventing private keys from being committed","type":"gate"}],"tags":["config","pre-commit","guardrails","math-first","schema-validation","CI"],"layer":"governance","dependencies":["claims-registry.schema.json","deepseek-review-receipt.schema.json"],"summary":"Pre-commit configuration with 6 hooks: JSON/YAML validation, trailing whitespace, private key detection, DeepSeek receipt schema validation, claims registry validation, and math-content evidence requirement."}
{"file":"pyrochlore_sidon_receipt_v2.json","title":"Pyrochlore Sidon Receipt v2","concepts":[{"name":"Pyrochlore Sidon Analysis","description":"S=1 tetrahedron with Sidon edge labels {3,5,9,6,10,12} — exact diagonalization spectrum","type":"receipt"},{"name":"Sidon Edge Labels","description":"Edge sums {3,5,9,6,10,12} with Sidon addresses {1,2,4,8} for tetrahedron","type":"primitive"},{"name":"Exact S1 Spectrum","description":"Ground state energy -4J, degeneracy 3, first excited gap 1J, specific heat max at T=0.317J","type":"receipt"},{"name":"FAMM Scar Pressure","description":"Scar equation tracking frustration: scar_ij(t+1) = γ·scar_ij(t) + |S_i·S_j + 0.5|₊ - κ·repair_ij(t)","type":"algorithm"},{"name":"Pist Color Classification","description":"RRC shape classification: NoiseFloor at 10% closure, SignalShapedRouteCompiler at Cv max","type":"gate"},{"name":"S-Dependence Trend","description":"Lower S → stronger quantum fluctuations → higher scar pressure → more frustrated","type":"invariant"},{"name":"Material Comparison","description":"KMMC S=5/2 (15% closure) vs NaCaNi₂F₇ S=1 (90% continuum) — Sidon prediction matches","type":"receipt"},{"name":"Classical Limit","description":"P(L) integral closure = 15% at L_c ≈ 1.09 — Sidon geometric bound","type":"theorem"},{"name":"Thermodynamic Closure Fractions","description":"5%, 10%, 15%, 20%, 25% closure fractions at corresponding T/J values","type":"receipt"}],"tags":["receipt","pyrochlore","sidon","tetrahedron","exact-diagonalization","scar-pressure","thermodynamics","RRC"],"layer":"core-formalism","dependencies":["Sidon","FAMM","PIST","RRC"],"summary":"Pyrochlore tetrahedron exact diagonalization receipt with Sidon edge labels. Records S=1 spectrum, scar pressure equation, PIST color classification, material comparison (KMMC vs NaCaNi₂F₇), and S-dependence trend predicting >92% fluctuation for S=1/2."}
{"file":"shared-data/artifacts/capability_probe_receipt_2026-06-21.json","title":"Capability Probe Receipt (2026-06-21)","concepts":[{"name":"Capability Probe","description":"9-probe receipt testing quantum, optimization, and compute slot availability","type":"receipt"},{"name":"Photonic SLOs","description":"Perceval-Quandela photonic simulation — BS probabilities verified","type":"receipt"},{"name":"Bosonic Tensor Network","description":"Quimb tensor network contraction — 2-tensor contraction verified","type":"receipt"},{"name":"QAOA Cirq","description":"Cirq quantum approximate optimization — 1-qubit simulation verified","type":"receipt"},{"name":"QAOA Qiskit","description":"Qiskit quantum simulation — 2 distinct outcomes verified","type":"receipt"},{"name":"MIP HiGHS","description":"HiGHS LP solver — obj=-6.0, x=[2.0,2.0] verified","type":"receipt"},{"name":"Continuous SciPy","description":"SciPy optimization — minimization verified","type":"receipt"},{"name":"Graph NetworkX","description":"NetworkX graph analysis — K_5 diameter=1 verified","type":"receipt"},{"name":"GPU wgpu","description":"WebGPU compute via wgpu — RTX 4070 SUPER Vulkan adapter detected","type":"receipt"},{"name":"Tensor opt_einsum","description":"Optimized tensor contraction — GEMM path verified","type":"receipt"},{"name":"Directed Formulation Support","description":"QAP recommended (asymmetric MIP via HiGHS), QAOA not recommended (symmetry loss)","type":"gate"}],"tags":["receipt","capability-probe","quantum","optimization","GPU","tensor","wgpu","HiGHS"],"layer":"infrastructure","dependencies":["perceval-quandela","quimb","cirq","qiskit","highspy","scipy","networkx","wgpu","opt_einsum"],"summary":"Capability probe receipt from 2026-06-21. All 9 probes functional: Perceval photonic SLOs, Quimb bosonic TN, Cirq/Qiskit QAOA, HiGHS MIP, SciPy optimization, NetworkX graphs, wgpu GPU (RTX 4070 SUPER), opt_einsum tensor contraction."}
{"file":"shared-data/artifacts/braid_diat_codec_benchmark.json","title":"Braid DIAT Codec Benchmark","concepts":[{"name":"Braid DIAT Codec","description":"Braid Dynamic Integer-Address Transform codec — 714.2 avg bytes, 0.029ms encode, 0.034ms decode","type":"receipt"},{"name":"MessagePack Baseline","description":"MessagePack baseline — 1747.8 avg bytes, 0.103ms encode, 0.002ms decode","type":"receipt"},{"name":"Cap'n Proto Baseline","description":"Cap'n Proto baseline — 29.0 avg bytes, 0.002ms encode, 0.0001ms decode","type":"receipt"},{"name":"Codec Comparison","description":"1000-frame benchmark: Braid DIAT is 2.45x smaller than MessagePack but 39x larger than Cap'n Proto","type":"receipt"},{"name":"DIAT","description":"Dynamic Integer-Address Transform — shell coordinate transform for codec encoding","type":"algorithm"}],"tags":["receipt","benchmark","codec","braid","DIAT","messagepack","capnproto","serialization"],"layer":"core-formalism","dependencies":["DIAT","BraidStorm"],"summary":"1000-frame benchmark comparing Braid DIAT codec against MessagePack and Cap'n Proto. DIAT achieves 2.45x compression over MessagePack (714 vs 1748 bytes) but Cap'n Proto is 24.6x smaller (29 bytes) with fastest encode/decode."}
{"file":"6-Documentation/docs/specs/ENE_MEMORY_ATLAS_SPEC.md","title":"ENE Memory Atlas Spec","concepts":[{"name":"MemoryAtom","description":"Addressable memory record carrying voxel key, manifold coordinates, concept vector, scalar field, cryptographic seal, and body references","type":"primitive"},{"name":"Q0_16","description":"Signed pure-fraction fixed-point in [-1,1] used for scalar field values at memory atoms","type":"definition"},{"name":"ManifoldPoint","description":"MOIM Q8.8 five-dimensional identity point for concept addressing","type":"definition"},{"name":"ed25519 MMR","description":"Cryptographic signing and Merkle Mountain Range attestation for memory atoms","type":"protocol"},{"name":"BFT Trimvirate","description":"Byzantine fault-tolerant quorum requiring ≥2 of 3 nodes (warden, judge, hutter)","type":"protocol"},{"name":"dless_omega","description":"Conformal factor warping search metric from chi, kappa, sigma, lambda, eta components","type":"definition"},{"name":"lane_projection","description":"Three-lane (calculation, defense, verification) scalar projection of Q0_16 values","type":"architecture"}],"tags":["memory","atlas","distributed","cryptographic","fixed-point","manifold","BFT","MMR"],"layer":"infrastructure","dependencies":["FixedPoint","S3C"],"summary":"Defines the unified addressable memory surface for all LLMs in the stack, combining fractal hash, 5D manifold coordinates, signed Q0_16 scalar fields, and BFT attestation into a single MemoryAtom protocol."}
{"file":"6-Documentation/docs/specs/ENE_HOTSWAP_PLUGIN_ARCHITECTURE.md","title":"ENE Hotswappable Plugin Architecture","concepts":[{"name":"Plugin Lifecycle","description":"8-phase plugin lifecycle: discover, load, admit, scan, plan, commit, verify, unload","type":"protocol"},{"name":"Plugin Manifest","description":"JSON declaration of plugin ID, version, surfaces, capabilities, and entrypoint","type":"spec"},{"name":"TiddlyWiki Bridge","description":"First frontline plugin that watches .tid files and upserts ENE packages per tiddler","type":"recipe"},{"name":"Settlement Policy","description":"Deterministic receipts for each write with dry-run mode and idempotent ingest","type":"gate"}],"tags":["plugin","architecture","ENE","TiddlyWiki","hotswap","settlement"],"layer":"infrastructure","dependencies":["ENE_MEMORY_ATLAS_SPEC"],"summary":"Defines a plugin architecture for ENE where new data surfaces can be attached, detached, audited, and upgraded without rewriting the core substrate, with TiddlyWiki as the first plugin."}
{"file":"6-Documentation/docs/specs/EMBEDDED_NODE_SURFACE_SPEC.md","title":"Embedded Node Surface Specification","concepts":[{"name":"GCL nanokernel","description":"Smallest executable transition unit that admits work, routes state, checks recovery, and emits receipts","type":"primitive"},{"name":"Appliance Server Model","description":"Node operated as a sealed function rather than a general-purpose stack","type":"architecture"},{"name":"Builder/Warden/Judge phases","description":"Topology phases (constructive, inhibitory, adjudication) carried by the node surface","type":"definition"},{"name":"Recovery Health Endpoint","description":"Plain recovery endpoint available even if compressed API fails","type":"gate"},{"name":"GCL-Edge","description":"Constrained edge node whose primary job is hosting the GCL nanokernel","type":"architecture"}],"tags":["embedded","node","nanokernel","GCL","edge","appliance","recovery"],"layer":"infrastructure","dependencies":["GCL_TOPOLOGY_REVISION_SPEC","OMNITOKEN_GCL_REDESIGN"],"summary":"Defines a reusable embedded surface for low-resource nodes using a GCL nanokernel, keeping only local machinery to join the atlas, expose minimal API, recover itself, and mount external state."}
{"file":"6-Documentation/docs/specs/DRIFT_QUARANTINE_YANG_MILLS_SPEC.md","title":"Drift Quarantine - Yang-Mills Spec","concepts":[{"name":"Quarantine Notice","description":"Spec quarantined for drift-based claims not supported by evidence","type":"gate"},{"name":"compressionRatio ≠ transmissionAvoidance","description":"Key invariant: Layer 3 can reduce transmission but does not make data smaller by itself","type":"invariant"},{"name":"effective_network_cost","description":"Corrected architecture equation: anchor_frequency × compressed_payload_size","type":"definition"}],"tags":["quarantine","yang-mills","drift","compression","correction"],"layer":"documentation","dependencies":[],"summary":"Quarantined specification containing unsupported claims about Yang-Mills feasibility, with corrected framing that separates lossless compression from transmission avoidance."}
{"file":"6-Documentation/docs/specs/DP_TEXEL_8K_ENCODING_SPEC.md","title":"DisplayPort × NVENC Texel Stream Specification","concepts":[{"name":"8K60 Texel Transport","description":"DisplayPort 1.4a HBR3 carrying 8K@60Hz pseudo-frames with texel data","type":"spec"},{"name":"NVENC Multi-Session","description":"8 concurrent H.265 encode sessions for parallel data lanes","type":"architecture"},{"name":"FP16 Texel Packing","description":"2 bytes per texel doubling throughput to 800M texels/sec","type":"algorithm"},{"name":"PIST(k,t) encoding","description":"CUDA Core encoding PIST data into NUVMAP texel streams","type":"algorithm"}],"tags":["displayport","NVENC","8K","texel","hardware","GPU","encoding"],"layer":"hardware","dependencies":[],"summary":"Specifies 8K60 texel transport via DisplayPort 1.4a and NVENC hardware encoding, mapping soliton field parameters onto TMDS lanes with FP16 packing."}
{"file":"6-Documentation/docs/specs/DP_RRC_RECEIPT_ENCODING_SPEC.md","title":"DP-RRC: Depth-Prefix Receipt Encoding","concepts":[{"name":"BraidReceipt","description":"6-dimension receipt: crossing matrix C, Sidon slack σ, step count k, residuals ε_seq, write time t, scar absence ∅","type":"receipt"},{"name":"BraidBracket","description":"Structure with lower, upper, gap, kappa, phi, admissible fields from PhaseVec","type":"definition"},{"name":"Sidon Labels","description":"Powers of 2 (1,2,4,8,16,32,64,128) as collision-free crossing addresses","type":"definition"},{"name":"DP-Expr Encoding","description":"Dot-prefixed depth markers as alternative to parentheses for tree-structured receipt data","type":"algorithm"},{"name":"receipt_invertible","description":"Lean theorem proving reconstruction from receipt is the definition of lossless compression","type":"theorem"}],"tags":["receipt","encoding","braid","sidon","compression","RRC","DP-expr"],"layer":"core-formalism","dependencies":["BraidEigensolid","AVMIsa.Emit","RRC.Emit"],"summary":"Defines depth-prefix encoding for RRC BraidReceipt structures using dot-prefixed depth markers, mapping the 6 receipt dimensions onto a compact tree-structured format."}
{"file":"6-Documentation/docs/specs/DECODER_FACING_RECONSTRUCTION_CORE.md","title":"Decoder-Facing Reconstruction Core","concepts":[{"name":"Reconstruction Core","description":"Compressed representation that is not assembly but a decoder-facing reconstruction core","type":"architecture"},{"name":"Validity Rule","description":"Core valid only when Repair(Replay(K, Theta, Pi), R) == S and epsilon_byte = 0","type":"gate"},{"name":"Byte Law","description":"|D| + |K| + |Theta| + |Pi| + |R| + |Receipts| < |S|","type":"invariant"},{"name":"Interface Layers","description":"Five layers: human surface, proposal surface, reconstruction core, receipt surface, output surface","type":"architecture"},{"name":"ADMIT/HOLD/QUARANTINE","description":"Three-state gate for compression admission decisions","type":"gate"}],"tags":["compression","reconstruction","decoder","byte-law","admission","gate"],"layer":"core-formalism","dependencies":["LAW_GATED_RECONSTRUCTION_CORE_SHIFT"],"summary":"Defines the interface boundary for the compressed core where validity is established by deterministic replay, residual repair, receipts, and byte-exact output rather than readability."}
{"file":"6-Documentation/docs/specs/CONTINUED_FRACTION_COMPRESSION_ADAPTATION.md","title":"Continued Fraction Compression Adaptation","concepts":[{"name":"Continued Fraction Encoding","description":"Rational values encoded as finite partial quotients for exact replay","type":"algorithm"},{"name":"CF Byte Law","description":"B(partial_quotients) + B(residual) < B(original value)","type":"invariant"},{"name":"Adaptable Math Surfaces","description":"Fibonacci ratios, golden-angle sampling, fixed-point thresholds, and branch-cut ratios as CF candidates","type":"definition"},{"name":"evalCf","description":"Replay recurrence for reconstructing numerator/denominator from partial quotients","type":"algorithm"}],"tags":["continued-fractions","compression","encoding","exact-arithmetic","ratios"],"layer":"core-formalism","dependencies":["FixedPoint"],"summary":"Adapts ratio-heavy Research Stack math to exact continued-fraction carriers for compression, encoding rational values as compact integer streams with exact replay."}
{"file":"6-Documentation/docs/specs/CBF_Hardware_Spec.md","title":"Chromatic Braid Field (CBF) Hardware Specification","concepts":[{"name":"CBF Pipeline","description":"DIAT ∘ AMMR ∘ Bracket ∘ AVMR ∘ CMYK ∘ Rope/MIMO unified processing","type":"architecture"},{"name":"DIATLeaf","description":"Local tuple encoding with a, b, ab, a-b, residue, slot, parity, jitter","type":"definition"},{"name":"PhaseVec","description":"Phase vector (x,y) from DIAT Lift operation","type":"definition"},{"name":"Bracket Step","description":"Computes κ, φ, lower/upper/gap, admissibility from PhaseVec accumulation","type":"algorithm"},{"name":"CMYK Colorizer","description":"Maps to coherence, modulation, yield, constraint channels","type":"algorithm"}],"tags":["CBF","hardware","FPGA","braid","DIAT","AMMR","CMYK"],"layer":"hardware","dependencies":["DIAT","AMMR","AVMR"],"summary":"Unifies DIAT local tuple encoding, AMMR vector accumulation, bracket admissibility calculus, AVMR hierarchical strand aggregation, and CMYK channel decomposition into a single FPGA pipeline."}
{"file":"6-Documentation/docs/specs/BurgersHarmonicPeelingVerification.md","title":"Burgers Harmonic Peeling — Witness Grammar Verification","concepts":[{"name":"FNWH","description":"Field decompilation into witness grammars via peeling","type":"algorithm"},{"name":"Viscosity Stiffening","description":"ν_eff = ν_0 (1 + Ω) trapping mechanism","type":"definition"},{"name":"Stiffening Factor","description":"κ = 0.3547 (35.47%) global bound safety margin","type":"definition"},{"name":"Brillouin Bound","description":"Gradient ceiling |∇u| ≤ ℏ k_max / m","type":"invariant"},{"name":"Witness Grammar","description":"Finite symbolic source code recovered from a field with carrier/texture roles","type":"definition"}],"tags":["burgers","FNWH","witness-grammar","viscosity","brillouin","verification"],"layer":"core-formalism","dependencies":["WitnessGrammar","CoulombComplexity","BHOCS","FAMM"],"summary":"Maps Burgers toy equations to witness grammars, verifying viscosity stiffening, quantum pressure regularization, solidification, phonon draining, and Brillouin zone bounds."}
{"file":"6-Documentation/docs/specs/BERNOULLI_OCCUPANCY_RECEIPT_MATH.md","title":"Bernoulli Occupancy Receipt Math","concepts":[{"name":"Occupancy Frame","description":"Generic finite slot system with n slots, k throws, s target occupancy","type":"definition"},{"name":"Birthday Problem Generalization","description":"Shift from specific preselected slot to any slot having s hits","type":"algorithm"},{"name":"Expected Slot Formula","description":"E[X_s] = n * C(k,s) * (1/n)^s * (1-1/n)^(k-s)","type":"theorem"},{"name":"Collision Estimation","description":"Estimating expected collisions, survivor buckets, and candidate reuse across finite slots","type":"algorithm"}],"tags":["bernoulli","occupancy","birthday-problem","hash-collision","receipt","probability"],"layer":"core-formalism","dependencies":[],"summary":"Generalizes birthday-problem/hash-collision math into a reusable receipt primitive for estimating expected collisions, survivor buckets, and candidate reuse across finite slots."}
{"file":"6-Documentation/docs/specs/AVM_CANONICAL_SPEC.md","title":"Canonical Specification for the Adaptive Virtual Machine (AVM)","concepts":[{"name":"AVM ISA","description":"Lean-only instruction set with finite opcodes, finite value types, deterministic step/run semantics","type":"architecture"},{"name":"Adapter Shims","description":"Extraction/interop targets that encode/decode AVM programs but do not define semantics","type":"architecture"},{"name":"Boundary Threshold","description":"δ ∈ [0,1] controlling semantic stripping from language-specific to invariant roots","type":"definition"},{"name":"Float Prohibition","description":"Float forbidden in AVM core and backends; only at external I/O boundary with immediate conversion","type":"invariant"},{"name":"Q0_16 Default","description":"Q0_16 as default for dimensionless scalars, Q16_16 only when range/precision forces it","type":"definition"}],"tags":["AVM","ISA","virtual-machine","lean","fixed-point","bytecode"],"layer":"core-formalism","dependencies":["FixedPoint"],"summary":"Defines AVM as a Lean-only ISA with finite opcodes, deterministic semantics, fixed-point arithmetic, and adapter shims for Python/Rust/Verilog extraction targets."}
{"file":"6-Documentation/docs/specs/AUTOADAPTIVE_METATYPE_INVARIANTS.md","title":"Auto-Adaptive Metatyping System: Core Invariant Ruleset","concepts":[{"name":"Type Mass Conservation","description":"MetaType mass = t·(2k+1-t) preserved under all lawful type transformations","type":"invariant"},{"name":"Exponential Gate","description":"Type transformation doubling type space must solve E_solve ≥ 2^n","type":"invariant"},{"name":"7 Core Invariants","description":"Mass conservation, exponential gate, convergence, self-consistency, self-preservation, self-optimization, self-guarding","type":"definition"},{"name":"MetaType","description":"Type system that rewrites its own type rules based on runtime observation","type":"architecture"}],"tags":["metatyping","type-system","self-adaptive","invariants","PIST","AngrySphinx"],"layer":"core-formalism","dependencies":["PIST","AngrySphinx"],"summary":"Defines the minimum invariant ruleset for a type system that rewrites itself: mass conservation, exponential gating, convergence, and self-preservation."}
{"file":"6-Documentation/docs/specs/ANGRYSPHINX_DONATED_CYCLE_GATE_SPEC.md","title":"AngrySphinx Donated-Cycle Gate Specification","concepts":[{"name":"Proof-of-Defense","description":"Web-facing layer where adversarial clients must spend local compute before receiving protected content","type":"protocol"},{"name":"Donated Cycles","description":"Client work is shaped so accepted proofs contribute to defender's gate calibration","type":"architecture"},{"name":"PoD Ledger","description":"Records accepted work, shell depth, attestation, and route metadata","type":"receipt"},{"name":"Challenge Engine","description":"Builds challenge payloads from policy, telemetry, and difficulty state","type":"architecture"},{"name":"S3 Shell Depth","description":"Tracks shell depth for exponential solve energy scaling","type":"definition"}],"tags":["AngrySphinx","security","proof-of-work","web-proxy","anti-bot","PQC"],"layer":"infrastructure","dependencies":["AngrySphinx"],"summary":"Defines a web-facing proof-of-defense layer where adversarial client compute is converted into defensive work, calibrated challenges, and auditable receipts."}
{"file":"6-Documentation/docs/specs/INFORMATION_MANIFOLD_TAXONOMY.md","title":"Information Manifold Taxonomy","concepts":[{"name":"Information Manifold","description":"Triple (M, g, ∇) with smooth manifold, Fisher-Rao metric, and affine connection","type":"definition"},{"name":"Fisher-Rao Metric","description":"Unique Riemannian metric invariant under sufficient statistics (Chentsov's theorem)","type":"theorem"},{"name":"S1: Fisher-Geometric","description":"Statistical manifold with optional genus-3 topological constraint, torsion-free","type":"definition"},{"name":"S2: Alcubierre Warp","description":"2D submanifold chart (τ, H) for compression frontier analysis","type":"definition"},{"name":"S3: Sovereign Informatic","description":"Full manifold with anisotropic tensors, torsion landscape, hyperfluid phase field","type":"definition"},{"name":"S4: Behavioral MOIM","description":"Discrete lattice approximation with Genome18 addressing (262,144 states)","type":"definition"}],"tags":["information-manifold","Fisher-Rao","Riemannian","torsion","taxonomy","geometry"],"layer":"core-formalism","dependencies":["EntropyMeasures","FAMM"],"summary":"Defines the canonical taxonomy of the Information Manifold as four specializations (Fisher-Geometric, Alcubierre Warp, Sovereign Informatic, Behavioral MOIM) of one fundamental object."}
{"file":"6-Documentation/docs/specs/HYDROGENIC_PHI_TORSION_BRAID.md","title":"Hydrogenic Phi-Torsion Braid","concepts":[{"name":"Fibonacci Spine","description":"Base exponential expansion r_base(theta) = r0 * exp(k * theta)","type":"definition"},{"name":"Hydrogenic 2s Constraint","description":"Topology-shape form of 2s radial wavefunction as geometric groove","type":"definition"},{"name":"Phi Torsion","description":"Logarithmic growth with phi = (1+sqrt(5))/2 creating spiral structure","type":"definition"},{"name":"Stair/Event Trace","description":"Parametric manifold exposing scale-delayed mass-number event cells","type":"architecture"}],"tags":["braid","phi","torsion","hydrogenic","fibonacci","manifold"],"layer":"core-formalism","dependencies":["FibonacciEncoding","GoldenAngleEncoding"],"summary":"Formalizes the hydrogenic Phi-torsion braid as a parametric manifold from Fibonacci spine through hydrogenic 2s constraint groove to Phi torsion and stair traces."}
{"file":"6-Documentation/docs/specs/HUMAN_SURFACE_JSONL_SPEC.md","title":"Human Surface JSON-L Spec","concepts":[{"name":"Human Surface","description":"Any interface where a person, tool, model, device, or storage exposes state","type":"definition"},{"name":"JSON-L Envelope","description":"Append-only JSON event line for all human-facing surfaces","type":"spec"},{"name":"HS0-HS4 Layers","description":"Surface classes, JSON-L envelope, admission projection, Omnitoken mapping, shell/storage","type":"architecture"},{"name":"AngrySphinx Quarantine","description":"Default unknown-shell behavior preserving unknown surfaces as archive data","type":"gate"}],"tags":["JSONL","human-surface","envelope","append-only","admission","Omnitoken"],"layer":"infrastructure","dependencies":["OMNITOKEN_GCL_REDESIGN","EMBEDDED_NODE_SURFACE_SPEC"],"summary":"Defines one append-only JSON-L language for all human-facing surfaces that feed Omnitoken, GCL, ENE, RGFlow, and embedded node surfaces."}
{"file":"6-Documentation/docs/specs/HDMI_Field_Encoding_Spec.md","title":"HDMI Field Encoding Specification","concepts":[{"name":"TMDS Lane Hijacking","description":"Repurposing HDMI TMDS lanes for soliton field parameter transport","type":"architecture"},{"name":"Control Period Abuse","description":"Data Island periods carry soliton topology metadata instead of audio/InfoFrames","type":"architecture"},{"name":"DDC Witness Exchange","description":"I2C channel repurposed for soliton attestation and ZK-STARK verification","type":"protocol"},{"name":"Pseudo-Frame","description":"1920×1080 mapped to 11-dimensional parameter matrix × soliton instances","type":"definition"}],"tags":["HDMI","TMDS","soliton","field-encoding","hardware","abuse-vector"],"layer":"hardware","dependencies":[],"summary":"Specifies physical layer hijacking of HDMI TMDS lanes to transport N-dimensional soliton field parameters, with DDC channel repurposed for witness exchange."}
{"file":"6-Documentation/docs/specs/GEOMETRY_EMERGENCY_BOOT_WITNESS_2026-04-08.md","title":"Geometry Emergency Boot Witness","concepts":[{"name":"Geometric Encoding","description":"Recovery seed encoded across spatial geometry, capacitance values, interconnect topology, and physical dimensions of graphene supercapacitors","type":"architecture"},{"name":"6502 Design Philosophy","description":"Self-powered calculator architecture with solar panels and calculator-like efficiency","type":"architecture"},{"name":"EM Neutrality","description":"Embedded optical fiber instead of electrical traces for complete electromagnetic neutrality","type":"invariant"},{"name":"AEM20940 Energy Harvesting","description":"60mV cold-start harvesting from ambient energy","type":"recipe"},{"name":"Seed Assembly","description":"Multi-dimensional geometry collapse to 128-bit seed for emergency recovery","type":"algorithm"}],"tags":["emergency-boot","graphene","supercapacitor","hardware","recovery","geometry-encoding"],"layer":"hardware","dependencies":["TINY_IP_CONTIKI_SURFACE_SPEC"],"summary":"Defines a minimal hardware-rooted recovery mechanism where graphene supercapacitor geometric arrangement encodes a recovery seed for emergency boot."}
{"file":"6-Documentation/docs/specs/GENSIS_COMPILER_SPEC.md","title":"GENSIS Compiler Specification","concepts":[{"name":"Q0_64","description":"64-bit unsigned fixed-point type for [0,1) with 2^-64 precision","type":"definition"},{"name":"Matryoshka Brane Stack","description":"Nested reality shells from quantum foam to universe, each with native dimensionality","type":"architecture"},{"name":"AngrySphinx Gate","description":"Exponential energy gate at every shell boundary","type":"gate"},{"name":"Saturating Arithmetic","description":"All Q0_64 operations stay in [0,1) with saturation on overflow","type":"invariant"}],"tags":["GENSIS","compiler","Q0_64","matryoshka","brane","AngrySphinx","scalar"],"layer":"core-formalism","dependencies":["FixedPoint","AngrySphinx"],"summary":"Defines the GENSIS compiler transforming arbitrary data through a Matryoshka Brane Stack with Q0_64 0D scalar as universal lingua franca and AngrySphinx gates at every boundary."}
{"file":"6-Documentation/docs/specs/GCL_TOPOLOGY_REVISION_SPEC.md","title":"GCL Topology Revision Spec","concepts":[{"name":"GCL Topology Contract","description":"GCL as topology contract: observe→bind→route→sigma_check→policy→dag→verify→receipt","type":"protocol"},{"name":"Builder/Warden/Judge Phases","description":"Three topology phases (constructive, inhibitory, adjudication) in one surface","type":"definition"},{"name":"Canonical Gate","description":"Every route/compression/hardware/recovery passes through the same OBSERVE→RECEIPT gate","type":"gate"},{"name":"Route-Prior Sources","description":"8 surface families: sequence, GCL motif, informaton, MS3C, hardware, node, fractal fold, meta-autotype","type":"definition"},{"name":"FAMM Scar","description":"Failure record used for remembering and downranking similar routes","type":"receipt"}],"tags":["GCL","topology","gate","route-prior","phases","admission"],"layer":"core-formalism","dependencies":["GCL_FIELD_EQUATIONS_SPEC"],"summary":"Revises GCL from a carrier-specific language to a topology contract with canonical gate, route-prior sources, and builder/warden/judge as topology phases."}
{"file":"6-Documentation/docs/specs/GCL_FIELD_EQUATIONS_SPEC.md","title":"GCL Field Equations Spec","concepts":[{"name":"Candidate Surface Object","description":"x = (A, W, R, O, K) with alphabet, bits/symbol, role flags, operation flags, closure kind","type":"definition"},{"name":"Field Interaction","description":"Surface→metaprobe→field→RGFlow→LUT→finite GCL codon pipeline","type":"algorithm"},{"name":"Smallest Lawful Surface","description":"What is the smallest lawful surface that preserves the useful structure?","type":"invariant"},{"name":"Possibility Space Probe","description":"Discovers candidate computational surfaces across sequence substrates","type":"algorithm"}],"tags":["GCL","field-equations","surface","LUT","admission","RGFlow"],"layer":"core-formalism","dependencies":["GCL_TOPOLOGY_REVISION_SPEC"],"summary":"Defines field equations for GCL surface combination, compression, adaptation, and admission across sequence substrates, GCL motifs, and informaton surfaces."}
{"file":"6-Documentation/docs/specs/GCCL_ENCODING_CONTRACT.md","title":"GCCL Encoding Contract","concepts":[{"name":"GCCL","description":"Geometric, Cognitive, and Compression Law — the law layer deciding transformation admissibility","type":"definition"},{"name":"Seven Law Surfaces","description":"Geometric, Cognitive, Compression, Residual, Cost, Scale, Receipt","type":"definition"},{"name":"UMUP-lambda","description":"M = (S, T, I, R, K, P, Q, Lambda) encoding tuple for GCCL transitions","type":"definition"},{"name":"LawAxis","description":"Inductive type with 7 axes: geometric, cognitive, compression, residual, cost, scale, receipt","type":"definition"}],"tags":["GCCL","encoding","law","admission","transitions","receipt"],"layer":"core-formalism","dependencies":[],"summary":"Defines GCCL as the law layer encoding transitions through seven law surfaces (geometric, cognitive, compression, residual, cost, scale, receipt) wrapped in UMUP-lambda tuples."}
{"file":"6-Documentation/docs/specs/FORWARD_FOUNDATION_EQUATION_COMPILER.md","title":"Forward Foundation Equation Compiler","concepts":[{"name":"Foundation Kernel","description":"F0 = {O4, SD, MN, gamma_star, H_dV, Omega, Lambda, A} root equation set","type":"definition"},{"name":"Forward Admissibility","description":"No backward trust chain — only forward admissible generation from foundation kernel","type":"invariant"},{"name":"Shell Equation","description":"Equation atoms must compile from foundation kernel, closed under declared transform, with receipt","type":"gate"},{"name":"Origin Doctrine","description":"Origin may inspire; only closure admits","type":"invariant"}],"tags":["foundation","equation","compiler","forward","admission","kernel"],"layer":"core-formalism","dependencies":[],"summary":"Defines the forward foundation equation compiler where trusted equation objects must be generated forward from the foundation kernel, closed under declared transforms, and accompanied by receipts."}
{"file":"6-Documentation/docs/specs/MS3C_NESTED_REDUCTION_GEAR_SPEC.md","title":"MS3C-RG: Matroska S3C Nested Reduction Gear","concepts":[{"name":"Nested Shell Reducer","description":"Signed nested-shell route-prior geometry from S3C coordinates","type":"architecture"},{"name":"Gear Stack","description":"7 gears from raw coordinate shell through contra-rotation to GCL admission","type":"architecture"},{"name":"Contra-Rotation","description":"Gear that reverses shell rotation for boundary detection","type":"algorithm"},{"name":"Shear-Boundary Detector","description":"Detects phase transitions at shell boundaries","type":"algorithm"},{"name":"MatroskaCodon","description":"Compact shell descriptor encoding nested reduction state","type":"definition"}],"tags":["MS3C","S3C","matroska","reduction-gear","shell","routing"],"layer":"core-formalism","dependencies":["S3C","GCL_TOPOLOGY_REVISION_SPEC","FAMM"],"summary":"Defines the Matroska S3C Nested Reduction Gear as a signed nested-shell route-prior geometry system with 7-gear stack from raw coordinates through GCL admission."}
{"file":"6-Documentation/docs/specs/MORPHIC_NEURAL_NETWORK_ROUTING_SPEC.md","title":"Morphic Neural Network Routing Layer","concepts":[{"name":"MNN Routing","description":"Low-level adaptive routing between LUT admission and GCL codons","type":"architecture"},{"name":"Morphic Topology","description":"Topology that reshapes based on current manifold state, not fixed routing tables","type":"definition"},{"name":"Goal-Aware Routing","description":"Routes based on packet goal, node state, carrier conditions, recovery pressure, cost","type":"algorithm"},{"name":"Cost-Aware","description":"Every routing decision minimizes total cost (energy, time, bandwidth, recovery)","type":"invariant"}],"tags":["MNN","routing","adaptive","morphic","LUT","GCL"],"layer":"infrastructure","dependencies":["OMNITOKEN_GCL_REDESIGN"],"summary":"Defines a morphic neural network routing layer that adaptively reshapes paths from LUT admission to GCL actions based on goals, state, carrier conditions, and cost."}
{"file":"6-Documentation/docs/specs/LLM_REFINEMENT_PROTOCOL.md","title":"LLM Refinement Protocol","concepts":[{"name":"Refinement Loop","description":"7-step protocol: table expansion, lens sweep, glossary lock, primitive compression, residual audit, test hook, warden pass","type":"protocol"},{"name":"Lens Sweep","description":"Running concept through multiple charts: hostile scientist, patent examiner, systems engineer, etc.","type":"algorithm"},{"name":"Primitive Compression","description":"Collapse concept into four keeper primitives: field, shear, packet, spectral","type":"algorithm"},{"name":"Warden Pass","description":"Ask what would make the claim false, what would upgrade it, what language hides uncertainty","type":"gate"}],"tags":["LLM","refinement","protocol","audit","lens-sweep","warden"],"layer":"documentation","dependencies":[],"summary":"Converts rough research ideas into stable, auditable refinement loops by forcing models to expose hidden dimensions, rotate lenses, lock vocabulary, compress to primitives, and audit residuals."}
{"file":"6-Documentation/docs/specs/LAW_GATED_RECONSTRUCTION_CORE_SHIFT.md","title":"Law-Gated Reconstruction Core Shift","concepts":[{"name":"Reconstruction Core Shift","description":"Migration from route-prior accumulation to decoder-facing, law-gated reconstruction-core promotion","type":"architecture"},{"name":"Canonical Object","description":"S -> (K, Theta, R, Pi, Receipts) -> S_hat with hard gate Repair(Replay(K,Theta,Pi),R) == S","type":"definition"},{"name":"Byte Law Gate","description":"The only compression admission is counted bytes against raw bytes","type":"gate"},{"name":"Lowest-Cost Reconstruction Basis","description":"Find the lowest-cost reconstruction basis whose residual is cheap enough to repair byte-exactly","type":"algorithm"}],"tags":["reconstruction","law-gated","compression","shift","byte-law"],"layer":"core-formalism","dependencies":[],"summary":"Roadmap shift from route-prior accumulation to decoder-facing, law-gated reconstruction-core promotion where the compressed object is a decoder-facing reconstruction core."}
{"file":"6-Documentation/docs/specs/LANGUAGE_SET_MANIFOLD_GRAPH_TYPING.md","title":"Language Set Manifold Graph Typing","concepts":[{"name":"Language Set Graph","description":"Typed nodes and edges representing an entire language/code-set graph","type":"definition"},{"name":"Density Markers","description":"Payload-relevant signals explaining unusually high information density in surface forms","type":"definition"},{"name":"RRC Admissibility","description":"RRC classifying a language family as reusable compression/projection surface","type":"gate"},{"name":"Surface Form vs Payload","description":"Glyphs/words are adapter views; canonical payload is typed graph plus replay law","type":"invariant"}],"tags":["language","graph-typing","RRC","density","morphology","compression"],"layer":"core-formalism","dependencies":["Rainbow Raccoon Compiler"],"summary":"Defines how entire language sets (conlangs, programming languages, formal systems) can be typed as manifold graphs for RRC compression and projection."}
{"file":"6-Documentation/docs/specs/K3_COMPLIANT_NODE_STRUCTURE.md","title":"K3-Compliant Node Structure","concepts":[{"name":"K3 Compliance","description":"ENE mesh node with computational state bound to k=3 shell of S3C manifold","type":"definition"},{"name":"S3C Shell Boundaries","description":"k=3 shell: admissible energy 9 ≤ n < 16, throat at n=12","type":"definition"},{"name":"K3 Surface Coupling","description":"Topological coupling to K3 Surface Calabi-Yau manifold with χ=24","type":"definition"},{"name":"Throat Midpoint","description":"n=12 where a=b^0 giving isThroat=true as gravitational throat","type":"definition"}],"tags":["K3","S3C","node","topology","Calabi-Yau","shell"],"layer":"core-formalism","dependencies":["S3C","FixedPoint","NUVMATH"],"summary":"Details mathematical and software design for K3-compliant nodes where computational state is bound to the k=3 shell of S3C manifold, coupled to K3 Surface invariants."}
{"file":"6-Documentation/docs/specs/OMNITOKEN_GCL_REDESIGN.md","title":"Omnitoken GCL Redesign","concepts":[{"name":"Omnitoken","description":"Scale-invariant 1D scalar → compressed LUT → lawful GCL codon","type":"architecture"},{"name":"OMNIsurface","description":"Takes local shape of whatever substrate it touches while preserving one internal meaning","type":"definition"},{"name":"OT0-OT4 Layers","description":"Codon vocabulary, frame, fragment/manifest, JupiterBox envelope, carrier binding","type":"architecture"},{"name":"JupiterBox","description":"Bounded carrier envelope for Omnitoken/GCL state","type":"architecture"}],"tags":["Omnitoken","GCL","scalar","LUT","codon","redesign"],"layer":"infrastructure","dependencies":["GCL_TOPOLOGY_REVISION_SPEC","GCL_FIELD_EQUATIONS_SPEC"],"summary":"Redesigns Omnitoken as an OMNIsurface language taking the shape of whatever substrate it touches while preserving one internal scalar/LUT meaning admitted by GCL."}
{"file":"6-Documentation/docs/specs/OMINDIRECTION_LOGOGRAM_DESIGN_AND_COMPILER.md","title":"Omindirection Logogram Design and Compiler","concepts":[{"name":"Omindirectional Atom","description":"Oriented, placed, receipted symbolic atom with payload, identity, orientation, phase, position, status","type":"definition"},{"name":"Nine First Principles","description":"Payload≠presentation, direction≠handedness, chirality=phase projection, position=state, etc.","type":"invariant"},{"name":"Phase as Cyclic","description":"Chirality classes derived from cyclic phase in Z/360Z","type":"definition"},{"name":"Residual Policy","description":"Explicit declaration of what was lost and why projection was trusted or rejected","type":"gate"}],"tags":["logogram","omindirection","symbolic","atom","orientation","phase"],"layer":"core-formalism","dependencies":[],"summary":"Defines Omindirection as a system-agnostic contract for encoding symbolic payloads as oriented, placed, receipted atoms from first principles."}
{"file":"6-Documentation/docs/specs/NII_CORE_DRIVER_IMPLEMENTATION_PLAN.md","title":"NII Core Surface Driver Implementation Plan","concepts":[{"name":"NII Core Driver","description":"Mathematically defendable surface driver leveraging system topology","type":"architecture"},{"name":"SSS Monitoring","description":"Steady-State Stability monitoring from Layer 6","type":"algorithm"},{"name":"Alcubierre Information Metric","description":"Warp-speed compression from Layer 7","type":"definition"},{"name":"TSM-VDP ISA","description":"128-bit RISC-V custom extension for topological state machine","type":"architecture"},{"name":"FAMM-aware Scheduling","description":"Scheduling based on frustration timing","type":"algorithm"}],"tags":["NII","driver","FPGA","TSM","FAMM","hardware","Lean"],"layer":"hardware","dependencies":["Canonical Core v1","TSM-VDP","CBF"],"summary":"Outlines implementation plan for a Lean-verified NII core surface driver with SSS monitoring, Alcubierre Information Metric, and FAMM-aware scheduling."}
{"file":"6-Documentation/docs/specs/NII_CORE_DRIVER_COMPLETION_SUMMARY.md","title":"NII Core Surface Driver Completion Summary","concepts":[{"name":"Lean Formalization","description":"SurfaceDriver.lean with SSS, slip threshold, warp function, FAMM scheduler","type":"receipt"},{"name":"C Driver","description":"Linux kernel driver with Q16_16 arithmetic, SSS monitoring, FPGA Manager integration","type":"recipe"},{"name":"FPGA Bitstream","description":"Verilog with Q16_16 arithmetic units, SSS monitor, sigmoid approximation","type":"recipe"}],"tags":["NII","completion","Lean","C-driver","FPGA","verification"],"layer":"hardware","dependencies":["NII_CORE_DRIVER_IMPLEMENTATION_PLAN"],"summary":"Completion summary for NII Core Surface Driver with Lean formalization, C driver implementation, FPGA bitstream generation, and integration testing complete."}
{"file":"6-Documentation/docs/specs/PROJECTABLE_GEOMETRY_COMPRESSOR_SPEC.md","title":"Projectable Geometry Compressor Spec","concepts":[{"name":"Projectable Geometry","description":"Shared projectable geometry + compact carrier symbols + bounded residual sidecars + rehydration receipts","type":"architecture"},{"name":"Projection Pipeline","description":"project→preserve→improve: map to lower-dim control basis, track displaced coordinates, amortize over corpus","type":"algorithm"},{"name":"Genus-3 Residual Boat","description":"12D residual lane with genus-3 geometric structure","type":"definition"},{"name":"DNA Carrier Substitution","description":"Using DNA-style encoding as compact carrier for projected geometry","type":"algorithm"},{"name":"Byte Law","description":"K(model) + K(residuals|model) < K(raw objects)","type":"invariant"}],"tags":["compression","geometry","projection","residual","carrier","DNA"],"layer":"core-formalism","dependencies":[],"summary":"Defines compression architecture turning large structured objects into shared projectable geometry, compact carrier symbols, bounded residual sidecars, and exact rehydration receipts."}
{"file":"6-Documentation/docs/specs/PHI_S3C_PIST_BRIDGE_SPEC.md","title":"Phi-S3C-PIST Bridge Spec","concepts":[{"name":"Phi-S3C-PIST Bridge","description":"Connects Phi center to S3C shell coordinates and PIST witness transport","type":"bridge"},{"name":"Phi Correction Boundary","description":"Absolute cost vs relative efficiency distinction in Phi field","type":"definition"},{"name":"S3C Mass Boundary","description":"Closed mass (throat activation) vs open mass (next-shell tension) distinction","type":"definition"},{"name":"Phinary Indexing","description":"Zeckendorf-based irrational spacing and descent/address indexing","type":"algorithm"}],"tags":["phi","S3C","PIST","bridge","mass","phinary"],"layer":"core-formalism","dependencies":["UniversalField","S3C","PIST"],"summary":"Connects the Phi center to S3C shell coordinates and PIST witness transport, establishing correction boundaries and mass distinctions."}
{"file":"6-Documentation/docs/specs/Oracle_Interrogation_IDPC_v0_1.md","title":"Oracle Interrogation IDPC v0.1","concepts":[{"name":"IDPC Operator","description":"Inverse Delta Phi over Cosine: coherence per phase displacement","type":"definition"},{"name":"IDPC Formula","description":"IDPC = cos(theta) / (DeltaPhi + epsilon)","type":"definition"},{"name":"Fallible Oracle","description":"Oracle useful because wrong answers can reveal deeper patterns, not because always right","type":"definition"},{"name":"Three Oracle Layers","description":"Literal answer layer, pattern-detection layer, invariant-extraction layer","type":"architecture"}],"tags":["IDPC","oracle","interrogation","coherence","phase","OTOM"],"layer":"core-formalism","dependencies":[],"summary":"Records the IDPC operator as part of the OTOM oracle-interrogation path, measuring coherence per phase displacement with fallible oracle readings."}
{"file":"6-Documentation/docs/specs/Quaternion_Sidon_Standing_Field_v0_1.md","title":"Quaternion Sidon Standing Field v0.1","concepts":[{"name":"Quaternion Rotors","description":"Square-grid lattice with local SU(2)-like phase rotors","type":"definition"},{"name":"Sidon Pair Uniqueness","description":"Δq_ij = Δq_kl only for same unordered pair — anti-aliasing property","type":"invariant"},{"name":"Triangle-Wave Standing Field","description":"Cellular standing-flow update driving lattice dynamics","type":"definition"},{"name":"Pressure-Locking","description":"Extreme compression enabling paired collective modes","type":"definition"}],"tags":["quaternion","Sidon","lattice","standing-field","SU(2)","anti-aliasing"],"layer":"core-formalism","dependencies":[],"summary":"Records a speculative toy formalism of square-grid cellular lattice with quaternion spin/phase rotors, triangle-wave standing field, and Sidon pairwise uniqueness."}
{"file":"6-Documentation/docs/specs/RECONSTRUCTION_CORE_MATH_REVIEW_2026_05_09.md","title":"Reconstruction Core Math Review","concepts":[{"name":"Stage Review","description":"17-stage consistency review of reconstruction core shift","type":"receipt"},{"name":"Three Separations","description":"counted byte law ≠ auxiliary score; ADMIT_FIXTURE ≠ ADMIT; glyph/prior ≠ payload truth","type":"invariant"},{"name":"Receipt Fields","description":"raw_hash, kernel_hash, theta_hash, protocol_hash, residual_hash, repaired_hash","type":"receipt"},{"name":"enwiki8/9 Probes","description":"Wiki-logogram, XML dictionary, receipt aggregation, dictionary amortization probes","type":"recipe"}],"tags":["math-review","reconstruction","consistency","byte-law","enwiki"],"layer":"documentation","dependencies":["LAW_GATED_RECONSTRUCTION_CORE_SHIFT"],"summary":"Stage-by-stage math consistency review after the law-gated reconstruction-core shift, confirming the core equation holds and identifying remaining caveats."}
{"file":"6-Documentation/docs/specs/RESEARCH_STACK_NUVMAP_ADDRESS_SPACE.md","title":"Research Stack Address Space: Mountain on Mountains","concepts":[{"name":"NUVMAP","description":"Hierarchical meta-topological address space with 14-axis hyperbolic manifold","type":"architecture"},{"name":"Genome18","description":"Bit-exact 18-bit witness address from 6×3-bit bins","type":"definition"},{"name":"Matroska Shell Depth","description":"Recursive shell depth Sk representing conceptual distance from Core Formalism","type":"definition"},{"name":"Crystalline Core","description":"S0 root shell with m=1.0 maximum activation for OTOM core model","type":"definition"}],"tags":["NUVMAP","address-space","Genome18","MS3C","matroska","topology"],"layer":"infrastructure","dependencies":["MS3C_NESTED_REDUCTION_GEAR_SPEC"],"summary":"Defines the hierarchical meta-topological address space mapping projects/assets onto NUVMAP coordinates within 14-axis hyperbolic manifold."}
{"file":"6-Documentation/docs/specs/SilverSight_Spec.md","title":"SilverSight Specification","concepts":[{"name":"SilverSight","description":"Clean-slate successor to Research Stack with stable IDs, Lean definitions, and receipts","type":"architecture"},{"name":"YaFF Schema/Layout/WireFormat","description":"Three separate Core modules: Schema gives size+well-formedness, Layout is encoding choice, WireFormat is certified encoder/decoder","type":"architecture"},{"name":"DynamicCanal","description":"Physical instantiation abstraction: 1-Wire, PCIe, DRAM, JSON all equivalent","type":"definition"},{"name":"Claim-State Ladder","description":"BEAUTIFUL_PROVISIONAL → CALIBRATED_ENGINEERING_DELTA → REVIEWED → VERIFIED","type":"gate"}],"tags":["SilverSight","clean-slate","YaFF","schema","layout","wire-format","Lean"],"layer":"core-formalism","dependencies":[],"summary":"Clean-slate successor keeping formally verified concepts, discarding duplication, re-expressing as substrate-agnostic compute fabric with stable IDs and receipts."}
{"file":"6-Documentation/docs/specs/virtio_net_compute_fabric_spec.md","title":"Virtio-Net DMA Compute Fabric","concepts":[{"name":"Packet-as-Computation","description":"Ethernet is Math: packet headers are structural dimensions of computation state vector","type":"architecture"},{"name":"PistPacket","description":"Compute frame with Ethernet header + PIST computation header + Q16_16 payload","type":"definition"},{"name":"Toeplitz Transform","description":"RSS engine as hardware-accelerated binary matrix-vector convolution","type":"algorithm"},{"name":"Ring Buffer Transport","description":"virtio-net TX/RX rings as lock-free compute transport","type":"architecture"}],"tags":["virtio-net","DMA","PIST","compute-fabric","Ethernet","Toeplitz"],"layer":"infrastructure","dependencies":["PIST"],"summary":"Specifies treating virtualized Ethernet networking as high-throughput zero-copy packetized DMA computation backplane with PIST packets and NIC algebra offloads."}
{"file":"6-Documentation/docs/specs/vectorless_technical_review_response.md","title":"Vectorless Spatial Hash Architecture — Technical Review Response","concepts":[{"name":"Morton Code Locality","description":"Z-order curves preserving semantic locality in spatial hash","type":"algorithm"},{"name":"Lean/Python Boundary","description":"Python wraps Lean theorem only, no decision logic in Python","type":"invariant"},{"name":"Hierarchical Refinement","description":"Maintaining ~10 rows/cell for O(1) neighbor boundedness","type":"algorithm"},{"name":"classify_voltage_mode","description":"Lean theorem for voltage mode classification, Python wrapper only","type":"theorem"}],"tags":["spatial-hash","Morton-code","review","Lean-boundary","locality"],"layer":"infrastructure","dependencies":["SpatialHashCodec"],"summary":"Technical review response correcting AGENTS.md boundary violations, Lean/Python semantic drift, locality problems, and float contamination in spatial hash architecture."}
{"file":"6-Documentation/docs/specs/unified_manifold_blit_equation.md","title":"Unified Manifold-Blit Equation","concepts":[{"name":"Manifold-Blit Equation","description":"M_{k+1}(x) = Quant_LLM(J_DAG[M_k ⊕ (Ψ_q ⊗ R_RT)])","type":"definition"},{"name":"Blitter Operator","description":"Hardware-accelerated bitwise accumulation as discrete Picard integral","type":"algorithm"},{"name":"DAG-LUT Short-Circuit","description":"Hash check for solved states enabling O(1) lookup","type":"algorithm"},{"name":"Quantum Walk Amplitude","description":"Superposition of potential paths for quadratic convergence search","type":"definition"}],"tags":["manifold","blit","equation","GPU","quantum","Picard","DAG"],"layer":"core-formalism","dependencies":["AVMR"],"summary":"Defines the unified manifold-blit equation combining DAG-LUT short-circuiting, quantum amplitude sampling, hardware blitter accumulation, and LLM quantization."}
{"file":"6-Documentation/docs/specs/tag-addressable-compute-fabric.md","title":"Tag-Addressable Compute Fabric (TACF)","concepts":[{"name":"Tag Rings","description":"6 channel rings (STRAND, CROSSING, PIST, LUPINE, VAAPI, FLAC) for work dispatch","type":"architecture"},{"name":"Copy-If Pattern","description":"Content-addressed work: same payload = same hash = no copy needed","type":"pattern"},{"name":"HEP as LUT","description":"Hardware capability as tag subscription table, not device tree","type":"definition"},{"name":"Spatial Hash as Storage","description":"Node pool IS a spatial hash with tags as dimensions","type":"architecture"},{"name":"Virtio Ring as Scheduler","description":"Tag ring IS the scheduler — write descriptor, consumer reads and computes","type":"architecture"}],"tags":["TACF","tag-addressable","compute-fabric","spatial-hash","virtio","ring"],"layer":"infrastructure","dependencies":["FrameDispatcher"],"summary":"Ground-up redesign where work is published to tags, nodes self-select based on capability LUTs, and the 6 tag rings ARE the entire addressing scheme."}
{"file":"6-Documentation/docs/specs/self-adapting-compute-fabric.md","title":"Self-Adapting Compute Fabric","concepts":[{"name":"Node Bootstrap Agent","description":"One-shot agent running on first boot: tailscale, detect hardware, build labels, join k3s","type":"recipe"},{"name":"Capability Registry","description":"Nodes declare what they are and what they can do; fabric routes around failures","type":"architecture"},{"name":"Adaptive Scheduler","description":"Orchestrator engine absorbing new capacity instantly and degrading gracefully","type":"algorithm"},{"name":"k3s Labels from Probe","description":"Auto-generated k3s labels from hardware capability detection","type":"recipe"}],"tags":["self-adapting","compute-fabric","k3s","bootstrap","capability","orchestrator"],"layer":"infrastructure","dependencies":[],"summary":"Design for Research Stack that automatically adapts to rapid node changes with one-shot bootstrap agents, capability registries, and adaptive scheduling."}
{"file":"6-Documentation/docs/specs/sdta_spec.md","title":"Semantic Degenerate Tensor Adapter (SDTA)","concepts":[{"name":"SDTA","description":"Structural reformulation of NP-hard search as deformation theory over high-curvature eigensolid","type":"definition"},{"name":"Portability Coefficient","description":"η = ‖Π_D A Π_D†‖_F / ‖A‖_F measuring problem structure captured in degenerate subspace","type":"definition"},{"name":"Coordinate Failure","description":"Impossible ≠ ∞ — it means NaN (coordinate failure), not exponential growth","type":"invariant"},{"name":"Degenerate Chart","description":"Chart where eigensolid is degenerate, making constraint manifold flat (Laplace not Helmholtz)","type":"definition"},{"name":"SMN","description":"Semantic Mass Number — low SMN = high η = problem compresses into degenerate subspace","type":"definition"}],"tags":["SDTA","NP-hard","tensor","degenerate","eigensolid","portability"],"layer":"core-formalism","dependencies":["eigensolid_convergence"],"summary":"Reformulates NP-hard search as deformation theory over high-curvature eigensolid, introducing portability coefficient η to measure how much problem structure survives degenerate projection."}
{"file":"6-Documentation/docs/specs/quantization.md","title":"Quantization Specification","concepts":[{"name":"Ternary Weight Quantization","description":"W̃ = RoundClip(W/(γ+ε), -1, 1) achieving 10× memory reduction vs FP16","type":"algorithm"},{"name":"BitLinear","description":"Activation scaling with dynamic range preservation","type":"algorithm"},{"name":"MLGRU Recurrence","description":"h_t = f_t ⊙ h_{t-1} + (1-f_t) ⊙ c_t — no matrix multiplication, O(d) not O(d²)","type":"algorithm"},{"name":"RoundClip","description":"Values < 0.5 → -1, > 1.5 → +1, else 0 for ternary quantization","type":"algorithm"}],"tags":["quantization","ternary","BitLinear","MLGRU","memory-reduction","inference"],"layer":"core-formalism","dependencies":["FixedPoint"],"summary":"Defines ternary weight quantization for efficient neural network inference achieving 10× memory reduction with fixed-point arithmetic."}
{"file":"6-Documentation/docs/specs/lonely_runner_betti_mapping.md","title":"Lonely Runner Conjecture — Betti-2 Topological Obstruction Mapping","concepts":[{"name":"Lonely Runner Conjecture","description":"For k runners with distinct speeds on S¹, ∃t such that min_i dist(v_i t, 0) ≥ 1/(k+1)","type":"theorem"},{"name":"Scar Region","description":"Uncovered set M_t = S¹ \\ ∪ B(v_i t, δ) — the loneliness field","type":"definition"},{"name":"Coverage Density","description":"Φ(t,θ) = Σ 1_{B(v_i t, δ)}(θ) — which regions are illuminated by runners","type":"definition"},{"name":"NK-Hodge-FAMM Mapping","description":"Isomorphism between runner configuration and FAMM velocity/scar/β₂ structure","type":"bridge"},{"name":"Betti-2 Regularity","description":"β₂ = 0 condition: no uncovered region = no scar = no topological blowup","type":"invariant"}],"tags":["lonely-runner","Betti","topology","FAMM","conjecture","scar"],"layer":"core-formalism","dependencies":["FAMM","BettiSwoosh"],"summary":"Maps the Lonely Runner Conjecture onto NK-Hodge-FAMM framework, establishing isomorphism between runner coverage and FAMM scar/velocity structure."}
{"file":"6-Documentation/docs/specs/cole_hopf_vorticity_resolution.md","title":"Cole-Hopf + Vorticity Tension: Rigorous Resolution","concepts":[{"name":"Cole-Hopf Transformation","description":"u = -2ν₀ · ∇(ln Φ) making velocity field everywhere irrotational","type":"theorem"},{"name":"Vorticity Paradox","description":"Cole-Hopf implies ∇×u=0 (no vorticity) yet NS requires ω≠0","type":"definition"},{"name":"Hodge Decomposition Resolution","description":"Full state is DualQuaternion Q=(Q₁,Q₂)∈ℝ⁸; torsion from dual part generates vorticity","type":"theorem"},{"name":"DualQuaternion","description":"Q₁×Q₂ = ℝ⁴×ℝ⁴ encoding both rotational and translational information","type":"definition"}],"tags":["Cole-Hopf","vorticity","Navier-Stokes","DualQuaternion","Hodge","Burgers"],"layer":"core-formalism","dependencies":["ColeHopfTransform","BurgersPDE","BettiSwoosh"],"summary":"Resolves the apparent contradiction between Cole-Hopf irrotationality and Navier-Stokes vorticity through Hodge decomposition of the full DualQuaternion state."}
{"file":"6-Documentation/docs/specs/WitnessGrammar.md","title":"Witness Grammar Specification","concepts":[{"name":"Witness Grammar","description":"Finite symbolic source code recovered from a field: active witnesses, amplitudes, frequencies, phases, roles","type":"definition"},{"name":"Equation Sniffer","description":"Compares witness grammars, not raw data; searches for shared behavioral operators","type":"algorithm"},{"name":"Market-Data Bridge","description":"Same pipeline applied to price/volume/fundamental streams for behavioral operator class extraction","type":"bridge"},{"name":"FNWH Pipeline","description":"Raw field → FNWH peeling → WitnessGrammar → EquationSniffer → route suggestion","type":"pipeline"}],"tags":["witness-grammar","FNWH","equation-sniffer","field","decompilation"],"layer":"core-formalism","dependencies":["FNWH"],"summary":"Defines witness grammars as finite symbolic source code recovered from fields, with equation sniffers comparing grammars for shared behavioral operators."}
{"file":"6-Documentation/docs/specs/UNIVERSE_MODEL_ORBIT_ZOOM_PROTOCOL.md","title":"Universe Model Orbit-Zoom Protocol","concepts":[{"name":"Orbit-Zoom Protocol","description":"Navigation from coarse structure to checkable local laws via zoom ladder","type":"protocol"},{"name":"Zoom Ladder","description":"L0 Orbit → L1 Region → L2 State → L3 Derivation → L4 Receipt → L5 Gate","type":"architecture"},{"name":"Assigned vs Derived","description":"Critical distinction: assigned values (initial conditions) ≠ derived values (consequences)","type":"invariant"},{"name":"Torsional Fluid Baseline","description":"Baseline state with q1=q2=q3=1, eta=1.0, energy=velocity=0","type":"definition"}],"tags":["orbit-zoom","universe-model","navigation","receipt","protocol"],"layer":"documentation","dependencies":[],"summary":"Defines navigation and receipt protocol for mapping local problems into mathematical continents via orbit classification and zoom ladder descent."}
{"file":"6-Documentation/docs/specs/UNIFIED_TRANSPORT_ENCODING_SPEC.md","title":"Unified Transport Encoding Architecture","concepts":[{"name":"TMDS Lane Encoding","description":"Wire encoding over GPU display controller TMDS lanes with fragment packets","type":"architecture"},{"name":"VCN Video Encoding","description":"RDMA payload packed into video frames with hardware H.265 encode/decode","type":"architecture"},{"name":"Multi-Transport Routing","description":"Transport selection, fragmentation, multi-hop relay, fallback across 11 transports","type":"architecture"},{"name":"Unified Envelope","description":"[tag(1)] + [transport-header] + [RDMANetHeader(41)] + [payload] wire format","type":"spec"}],"tags":["transport","encoding","TMDS","VCN","RDMA","multi-transport"],"layer":"infrastructure","dependencies":[],"summary":"Defines unified transport encoding across TMDS lanes, VCN video, and mesh multi-transport routing with fragment packets and unified envelope wire format."}
{"file":"6-Documentation/docs/specs/UNIFIED_SIGNAL_ARCHITECTURE.md","title":"Unified Signal Architecture — DisplayPort × Audio × FPGA","concepts":[{"name":"NUVMAP Texel Stream","description":"PIST → Cayley V4 → braid/rope encoding feeding three hardware pathways","type":"architecture"},{"name":"Three-Column Architecture","description":"DisplayPort 8K60, PipeWire Audio 192kHz, FPGA Tang Nano 9K as unified frame sync","type":"architecture"},{"name":"VBLANK/SUBTRACT/HBLANK/PAUSE","description":"Blanking intervals carry TVI samples, mistake vectors, GCL diff deltas","type":"definition"},{"name":"Unified Frame Sync","description":"DP VSYNC = audio buffer swap with keyframe+attestation at frame 0","type":"protocol"}],"tags":["signal","architecture","DisplayPort","PipeWire","FPGA","unified","texel"],"layer":"hardware","dependencies":["DP_TEXEL_8K_ENCODING_SPEC","PIST"],"summary":"Bridges DisplayPort 8K60, PipeWire Audio 192kHz, and FPGA Tang Nano 9K into one texel state machine with unified frame synchronization."}
{"file":"6-Documentation/docs/specs/Two_Layer_Kinetic_Sidon_Lattice_v0_1.md","title":"Two-Layer Kinetic Sidon Lattice v0.1","concepts":[{"name":"Two-Layer Lattice","description":"Kinetic layer (motion/energy/phase-clock) coupled with Sidon relational layer (pair signatures/anti-aliasing)","type":"architecture"},{"name":"KineticToSidonFlow","description":"Kinetic flux producing Sidon-addressed pair signatures","type":"definition"},{"name":"SidonToKineticFlow","description":"Addressed relations feeding back into kinetic updates","type":"definition"},{"name":"Motion with Addressability","description":"Combining dynamics with clean pair addresses for coherence without alias collapse","type":"invariant"}],"tags":["Sidon","lattice","kinetic","two-layer","anti-aliasing","dynamics"],"layer":"core-formalism","dependencies":["Quaternion_Sidon_Standing_Field"],"summary":"Refines Quaternion Sidon Standing Field into two coupled layers: kinetic substrate generating flux and Sidon layer assigning pairwise relational addresses."}
{"file":"6-Documentation/docs/specs/TOPOLOGICAL_BRAID_ADAPTER_SPEC.md","title":"Topological Braid Adapter Specification","concepts":[{"name":"Fibonacci Anyon Isomorphism","description":"Five isomorphisms mapping HydrogenicPhiTorsionBraid to Fibonacci Anyon system","type":"bridge"},{"name":"ColorRope to DualQuaternion","description":"CMYK channels map to dual quaternion coordinates Q₁+εQ₂","type":"bridge"},{"name":"stairIndex to SLUG3State","description":"Crossing events map to B₃ braid group generator words","type":"bridge"},{"name":"tensegrityCoherent to Yang-Baxter","description":"Static equilibrium maps to Yang-Baxter equation consistency","type":"bridge"},{"name":"Zeckendorf to Fusion Tree","description":"Zeckendorf bits map to Fibonacci anyon fusion tree basis vectors","type":"bridge"}],"tags":["braid","adapter","Fibonacci-anyon","isomorphism","DualQuaternion","Yang-Baxter"],"layer":"core-formalism","dependencies":["HydrogenicPhiTorsionBraid","SLUG3","UnitQuaternion"],"summary":"Establishes five mathematical isomorphisms showing existing braid constructs are isomorphic to Fibonacci Anyon systems via dual quaternions and braid group representations."}
{"file":"6-Documentation/docs/specs/TINY_IP_CONTIKI_SURFACE_SPEC.md","title":"Tiny IP Surface Spec","concepts":[{"name":"Cooperative Event Loop","description":"Contiki-inspired cooperative processes that must return quickly, no blocking","type":"architecture"},{"name":"Fixed Packet Buffers","description":"96-byte MTU with 4 RX and 4 TX buffers for tiny nodes","type":"definition"},{"name":"Admission Before Expansion","description":"GCL must admit before payload expansion on tiny nodes","type":"gate"},{"name":"Shell Packet","description":"Small datagram-like shell packets for constrained systems","type":"definition"}],"tags":["tiny-IP","Contiki","embedded","cooperative","packet-buffer","shell"],"layer":"infrastructure","dependencies":["OMNITOKEN_GCL_REDESIGN"],"summary":"Defines Contiki-inspired shell concepts for embedded GCL/Omnitoken nodes with cooperative event loops, fixed packet buffers, and admission-before-expansion."}
{"file":"6-Documentation/docs/specs/SYMBOLOGY_DERIVED_LOGOGRAM_DESIGN.md","title":"Symbology-Derived Logogram Design","concepts":[{"name":"Safe Quarry Rule","description":"Borrow compression principle, not protected symbol identity","type":"invariant"},{"name":"Borrowable Principles","description":"denseOperator, modifierFamily, customCodePage, residualOmission, radicalComposition, etc.","type":"definition"},{"name":"Source Classes","description":"9 classes: array languages, code-golf, math notation, shorthand, logographic, syllabaries, ancient, constructed, specialist","type":"definition"},{"name":"Omindirection Atom","description":"Original receipted atom from extracted design grammar","type":"definition"}],"tags":["symbology","logogram","design","compression","principles","quarry"],"layer":"core-formalism","dependencies":["Omindirection"],"summary":"Defines safe quarry rules for extracting compression principles from dense symbolic systems (APL, Cuneiform, Hangul, etc.) into original Omindirection atoms."}
{"file":"6-Documentation/docs/specs/SSMS_nD_FUNCTIONAL_SPEC.md","title":"SSMS-nD: Scalar State Manifold Segmentation","concepts":[{"name":"Variable-n Manifold","description":"Dynamic n-dimensional submanifolds where n is determined per detection instance","type":"definition"},{"name":"Sequential Lifting","description":"L_{1D→n} operator lifting 1D sequences into n-dimensional space via ternary-quantized weights","type":"algorithm"},{"name":"OISC Architecture","description":"One Instruction Set Computer operating on dynamic n-manifolds","type":"architecture"},{"name":"Betti Number Penalty","description":"Complexity(n') = n'·log(n') penalty for dimensionality selection","type":"definition"}],"tags":["SSMS","manifold","segmentation","OISC","detection","lifting"],"layer":"core-formalism","dependencies":[],"summary":"Functional specification for promptable object detection using OISC architecture on dynamic n-manifolds with variable dimensionality determined by intrinsic structure."}
{"file":"6-Documentation/docs/specs/SMN_SEMANTIC_MASS_NUMBERS.md","title":"SMN: Semantic Mass Numbers","concepts":[{"name":"SMN","description":"Semantic load carried by a symbol inside the stack: identity+relation+provenance+constraint+decision+repair load","type":"definition"},{"name":"Mass Number","description":"Admissibility packet with residual and boundary guard — not proof or truth by itself","type":"gate"},{"name":"Non-Identities","description":"SMN ≠ atomic mass number, isotope mass, SI mass, Mass Number packet, proof, truth","type":"invariant"},{"name":"Pipeline","description":"semantic mass pressure → SMN score → optional Mass Number packet → admissibility receipt","type":"pipeline"}],"tags":["SMN","semantic-mass","load","admissibility","routing"],"layer":"core-formalism","dependencies":[],"summary":"Defines SMN as a project-local semantic-load measure for routing attention, with explicit non-identities separating it from physical mass and admissibility receipts."}
{"file":"6-Documentation/docs/specs/SEMANTIC_ENGINE_BINDING_DERIVATION_WORKBENCH.md","title":"Semantic Engine Binding Derivation Workbench","concepts":[{"name":"Conceptual Binding","description":"Relation that makes a semantic engine useful: document→chunk, chunk→embedding, etc.","type":"definition"},{"name":"Research Stack Re-Derivation","description":"Rebuilding external bindings through local bind/primitive/invariant/metric/receipt","type":"algorithm"},{"name":"Inspection Template","description":"License surface, binding inventory, hidden assumptions, Research Stack derivation per engine","type":"recipe"}],"tags":["semantic-engine","binding","derivation","ENE","inspection"],"layer":"documentation","dependencies":["ENE_MEMORY_ATLAS_SPEC"],"summary":"Defines methodology for inspecting MIT-licensed semantic engines, identifying minimum laws, and rederiving from Research Stack theory base."}
{"file":"6-Documentation/docs/specs/Receipt_Core_Infrastructure_v0_1.md","title":"Receipt Core Infrastructure v0.1","concepts":[{"name":"Receipt Infrastructure","description":"Safety and evidence-routing layer: executable/benchmark/adversarial receipts do not authorize promotion alone","type":"architecture"},{"name":"Proof Receipt Gate","description":"CANDIDATE + proof receipt may promote to REVIEWED; CANDIDATE + non-proof evidence ≠ REVIEWED","type":"gate"},{"name":"ClaimState","description":"Inductive type for claim states in receipt ledger","type":"definition"},{"name":"ReceiptKind","description":"proof, leanBuild, executableEval, benchmark, adversarialTrial receipt constructors","type":"definition"},{"name":"AdversarialTrial","description":"Receipt type for adversarial testing evidence","type":"definition"}],"tags":["receipt","infrastructure","proof","gate","adversarial","evidence"],"layer":"core-formalism","dependencies":[],"summary":"Defines minimal receipt infrastructure scaffold where workspaces cannot promote to reviewed status without explicit proof receipts."}
{"file":"6-Documentation/docs/plans/SilverSight_completion_pipeline.md","title":"SilverSight Completion Pipeline — Microstep Edition","concepts":[{"name":"8-Phase Pipeline","description":"Core Semantics → Formal theorems → Corpus/PIST → Comp theorems → Shims → Hardware → Apps → Promotion","type":"architecture"},{"name":"Claim-State Ladder","description":"BEAUTIFUL_PROVISIONAL → CALIBRATED → REVIEWED → VERIFIED with exit gates","type":"gate"},{"name":"Microstep Methodology","description":"Per-file, per-theorem, per-commit microsteps with goals, verification commands, commit messages","type":"recipe"},{"name":"Library Method","description":"Core/ defines contracts; libraries implement them; libraries never import other libraries","type":"invariant"}],"tags":["SilverSight","pipeline","microstep","plan","Lean","promotion"],"layer":"documentation","dependencies":["SilverSight_Spec"],"summary":"Expands SilverSight pipeline into per-file microsteps covering 8 phases from Core Semantics through hardware extraction to promotion, with claim-state tracking."}
{"file":"6-Documentation/docs/plans/SOVEREIGN_PROCEED_PLAN_V1.md","title":"Sovereign Proceed Plan: 48-Hour Execution","concepts":[{"name":"Burgers Theorem Hardening","description":"All 4 Burgers PDE theorems proven via 0D Braid Isomorphism using native_decide","type":"receipt"},{"name":"Hardware Loopback","description":"UART packet structure for Tang Nano 9K FPGA test harness","type":"recipe"},{"name":"AVM-R Integration","description":"Hierarchical vector roll-up integrating Burgers kernels into AVM-R structure","type":"architecture"},{"name":"BFS-Prover","description":"Breadth-First Search Prover for automatic lemma proof","type":"tool"}],"tags":["plan","Burgers","FPGA","AVM-R","execution","48-hour"],"layer":"documentation","dependencies":["BurgersPDE"],"summary":"48-hour execution plan covering Burgers theorem hardening, hardware loopback design, and AVM-R integration."}
{"file":"6-Documentation/docs/provenance/creation_os_adaptation_analysis.md","title":"Creation OS → Sovereign Stack: Adaptation Analysis","concepts":[{"name":"σ-Gate Mapping","description":"Creation OS σ-gate maps to Sovereign Stack bind instance with Q0_16 metric","type":"bridge"},{"name":"Conformal Calibration","description":"Creation OS empirical α=0.80 needs upgrade to 6.5σ Lean-proven threshold","type":"definition"},{"name":"Branchless Integer Kernels","description":"40 branchless Q0_16 kernels composed into one verdict, matching Creation OS architecture","type":"architecture"},{"name":"Ω-Loop Self-Improvement","description":"Creation OS recursive improvement maps to Master Equation for recursive evolution","type":"bridge"}],"tags":["creation-os","adaptation","σ-gate","conformal","bind","bridge"],"layer":"documentation","dependencies":["EntropyMeasures","Bind"],"summary":"Maps Creation OS σ-gate pipeline to Sovereign Stack bind/Lean architecture, identifying partial overlap and 7-order-of-magnitude confidence upgrade needed."}
{"file":"6-Documentation/docs/provenance/EVIDENCE_ATTACHMENT_GUIDELINES.md","title":"Evidence Attachment Guidelines","concepts":[{"name":"Build Log DAG","description":"UUID-tagged build steps in DAG structure with timestamps","type":"receipt"},{"name":"Benchmark Artifacts","description":"CSV, PNG, JSON artifacts in data/benchmarks/ with markdown links","type":"receipt"},{"name":"Path Quoting Invariant","description":"All filesystem paths must be quoted to handle spaces","type":"invariant"},{"name":"Citation Verification","description":"Automated verification of citation URL accessibility","type":"recipe"}],"tags":["evidence","provenance","build-log","benchmark","citation","DAG"],"layer":"documentation","dependencies":[],"summary":"Systematic approach for attaching evidence to claims: build logs with UUID DAG structure, benchmark artifacts, and citation accessibility verification."}
{"file":"6-Documentation/docs/provenance/ALL_ACTIONS_REPORT_2026-04-29.md","title":"All Actions Provenance Report","concepts":[{"name":"Provenance Compliance","description":"6 compliant claims, 0 critical issues after remediation","type":"receipt"},{"name":"External Verification Claims","description":"Arithmetic sanity checks with CAS provenance disclaimers replacing Wolfram claims","type":"receipt"},{"name":"Build Log Verification","description":"DAG build logger with UUID and timestamp per step","type":"recipe"},{"name":"Citation Accessibility","description":"17 URLs checked: 14 accessible, 3 infrastructure URLs","type":"receipt"}],"tags":["provenance","report","compliance","build","citation","2026-04-29"],"layer":"documentation","dependencies":[],"summary":"Provenance report for 2026-04-29 covering external verification claims, build claims, benchmark claims, and citation accessibility verification."}
{"file":"6-Documentation/docs/rrc_equation_classification.md","title":"RRC Equation Projection","concepts":[{"name":"RRC Shape Classification","description":"278 equations classified into 5 RRC shapes: CadForceProbeReceipt, CognitiveLoadField, LogogramProjection, ProjectableGeometryTopology, SignalShapedRouteCompiler","type":"receipt"},{"name":"Scale Witness","description":"Declares routing scale band, unit hint, threshold/tolerance/budget policy","type":"definition"},{"name":"Negative Control Witness","description":"Fail-closed controls: empty-equation invalidation, label-shuffle baseline, missing-receipt HOLD","type":"gate"},{"name":"CANDIDATE Status","description":"Object fits type-shape well enough for next proof/route stage, not mathematically proved","type":"definition"}],"tags":["RRC","equation","classification","projection","witness","admissibility"],"layer":"core-formalism","dependencies":["Rainbow Raccoon Compiler"],"summary":"RRC projection pass over 278 local equation surfaces recording nearest lawful shapes, projection axes, and admissibility holds."}
{"file":"6-Documentation/docs/rrc_logogram_projection_formalism.md","title":"RRC Logogram Projection Formalism","concepts":[{"name":"LogogramReceipt","description":"Structure with shape, status, regime, payloadBound, contradictionWitness, tearBoundary, detachedMass, residualLane","type":"definition"},{"name":"TypeAdmissible","description":"Logogram admissible only when shape=LogogramProjection, status=Candidate, payloadBound=true","type":"gate"},{"name":"Projection Admissible","description":"Projection safe under local payload and semantic-regime checks","type":"gate"},{"name":"Merge Admissible","description":"Additional condition beyond projection admissibility for merge operations","type":"gate"},{"name":"Torn Logogram Repair","description":"Torn logogram can be projection-admissible after repair/quarantine while not merge-admissible","type":"theorem"}],"tags":["RRC","logogram","projection","formalism","admissibility","Lean"],"layer":"core-formalism","dependencies":["RRCLogogramProjection"],"summary":"Formal scaffold with Lean-checked routing theorems for logogram projection admissibility, proving torn logograms can be projection-admissible after repair."}
{"file":"6-Documentation/docs/rrc_logogram_projection_bridge.md","title":"RRC Logogram Projection Bridge","concepts":[{"name":"LogogramProjection Bridge","description":"Binds canonical cell hash, bounded glyph payload, substitution receipt, semantic regime, RRC type witness into single receipt","type":"bridge"},{"name":"Projection Equation","description":"P_logogram(source) = (canonical_hash, cell_hash, glyph_payload_16, semantic_regime, substitution_receipt, rrc_type_witness)","type":"definition"},{"name":"5/5 CANDIDATE","description":"All 5 sample logograms achieve RRC CANDIDATE status with 4 merge-admissible, 1 repaired tear","type":"receipt"}],"tags":["RRC","logogram","bridge","projection","receipt","shim"],"layer":"infrastructure","dependencies":["RRCLogogramProjection"],"summary":"Projection bridge binding logogram components into single LogogramProjection receipts, with 5/5 samples achieving RRC CANDIDATE status."}
{"file":"6-Documentation/docs/compression_signal_shaping_synthesis.md","title":"Compression Signal-Shaping Synthesis","concepts":[{"name":"Signal-Shaped Route Compiler","description":"Shape route space before coding, then pay exact residual/witness/decoder/container bytes","type":"architecture"},{"name":"12 Approach Classes","description":"PAQ context mixing, decision-diagram search, T16 pipeline, Phi response, compressed sensing, etc.","type":"definition"},{"name":"Holographic Fractional Recursive Fold","description":"Boundary descriptor plus bounded memory compression approach","type":"definition"},{"name":"Semantic Topology Regimes","description":"Fold/prune/tear decisions based on semantic topology","type":"algorithm"}],"tags":["compression","signal-shaping","route-compiler","PAQ","sensing","topology"],"layer":"core-formalism","dependencies":[],"summary":"Synthesizes compression approaches into signal-shaped route compiler pattern: shape route space before coding, then pay exact residual bytes."}
{"file":"6-Documentation/docs/rainbow_raccoon_compiler_integration.md","title":"Rainbow Raccoon Compiler Integration","concepts":[{"name":"RRC Type-Checker","description":"Manifold-indexed type-checker: object→projection→shape→witness→field-equation→receipt","type":"architecture"},{"name":"16-Axis Manifold","description":"Projection into semantic_entropy, geometric_mass, compression_pressure, topology_torsion, etc.","type":"definition"},{"name":"MetaManifoldProver","description":"First proof-backed RRC lane: Q16_16 fixed-point lowering certificate","type":"theorem"},{"name":"CANDIDATE/HOLD","description":"Conservative emission: CANDIDATE only with enough declared evidence, HOLD otherwise","type":"gate"}],"tags":["RRC","integration","manifold","type-checker","Q16_16","certificate"],"layer":"core-formalism","dependencies":["MetaManifoldProver"],"summary":"Represents Rainbow Raccoon Compiler as manifold-indexed type-checker with 16-axis projection and first proof-backed fixed-point lowering lane."}
{"file":"6-Documentation/docs/famm/FAMM_Stigmergic_Route_Memory.md","title":"FAMM — Stigmergic Route Memory","concepts":[{"name":"FAMM","description":"Frustration-Aligned Memory Management: scars becoming navigation","type":"definition"},{"name":"Stigmergic Memory","description":"Agents leave traces in medium; altered environment biases later action","type":"definition"},{"name":"FAMM vs AMMR/AVMR","description":"AMMR preserves history, AVMR aggregates vector state, FAMM changes where system searches next","type":"definition"},{"name":"FAMM Load","description":"L_famm = Σ² + I_lock + Δ_φ measuring frustration timing load","type":"definition"},{"name":"Scar Navigation","description":"Failed→avoid, partial→preserve as torsion, successful→reinforce, ambiguous→quarantine","type":"algorithm"}],"tags":["FAMM","stigmergy","route-memory","frustration","scar","navigation"],"layer":"core-formalism","dependencies":["AMMR","AVMR"],"summary":"Bridges FAMM to stigmergic memory: failed routes become avoid signals, partial routes become torsion signals, successful routes become attractors."}
{"file":"6-Documentation/docs/transfold_enwiki8_magnetic_domain_generator.md","title":"Transfold Enwiki8 Magnetic Domain Generator","concepts":[{"name":"Transfold Map","description":"byte_stream_signal → magnetic_domain_equation mapping entropy to field demand","type":"algorithm"},{"name":"Magnetic Domain Equations","description":"L_info, G_over, M_i, Q_i equations from byte statistics","type":"definition"},{"name":"Magnetization/Hysteresis","description":"Mean magnetization 0.644 and heat loss 1.012 from 64KiB enwik8 slice","type":"receipt"},{"name":"Stress Sweep","description":"Capacity threshold sweep from 2.50 to 5.25 showing overflow behavior","type":"recipe"}],"tags":["transfold","enwiki8","magnetic-domain","byte-signal","stress-test"],"layer":"infrastructure","dependencies":[],"summary":"Converts byte slices into magnetic-domain equation receipts for stress-testing, mapping entropy/transition-rate/repeated-4-grams to field/remanence/hysteresis channels."}
{"file":"6-Documentation/docs/transfold_couch_data_magnetic_domain_comparison.md","title":"COUCH Data Magnetic-Domain Comparison","concepts":[{"name":"COUCH vs enwik8","description":"COUCH bundle: higher remanence (0.889), lower susceptibility (0.569), lower heat loss (0.239) than enwik8","type":"receipt"},{"name":"Routing Implication","description":"COUCH = compact high-remanence surface preferring dictionary/state reuse; enwik8 = high-transition needing boundary-aware shaping","type":"definition"},{"name":"Magnetic Domain Analogue","description":"Byte-statistical analogue supporting routing and stress-test comparisons only","type":"invariant"}],"tags":["COUCH","enwik8","comparison","magnetic-domain","routing"],"layer":"infrastructure","dependencies":["transfold_enwiki8_magnetic_domain_generator"],"summary":"Compares COUCH data bundle vs enwik8 under magnetic-domain transform, showing COUCH is more memory-like and less transition-agitated."}
{"file":"6-Documentation/docs/speculative-materials/PhotonChasedFerriteTraceFormation.md","title":"Photon-Chased Ferrite Trace Formation","concepts":[{"name":"Guided Reaction Space","description":"Confined channel as guided reaction space with traveling activation front biasing deposition","type":"definition"},{"name":"Activation-Deposition Alignment","description":"v_front ≈ v_deposition_response for optimal field-biased ferrite deposition","type":"invariant"},{"name":"Rate Equation","description":"dF/dt = k·A[I,λ]·R_leak·C_wall·η_EET - D_loss","type":"definition"},{"name":"Axial Memory","description":"Desired effect is field-biased ferrite deposition with axial memory, not mere ferrite","type":"definition"}],"tags":["ferrite","photon","speculative","materials","deposition","trace"],"layer":"documentation","dependencies":[],"summary":"Speculative materials concept for using traveling electromagnetic activation fronts to bias ferrite-like deposition along confined channels with axial memory."}
{"file":"6-Documentation/docs/distilled/Total_Calculation_Review.md","title":"Total Calculation Review","concepts":[{"name":"Monthly Cost Projection","description":"Projected monthly costs from $109.42 through August, dropping to $61.20 by November","type":"receipt"},{"name":"Bill Detection","description":"36 bill groups detected with $6,257.59 projected 2026 total","type":"receipt"}],"tags":["cost","projection","subscription","billing","review"],"layer":"documentation","dependencies":[],"summary":"Reviews projected monthly costs for Research Stack subscriptions showing $648.40 Jun-Dec total with Kimi and Wolfram expiring."}
{"file":"6-Documentation/docs/distilled/Pythagorean_Theorem_and_Beyond.md","title":"Pythagorean Theorem and Beyond","concepts":[{"name":"n=2 Specialness","description":"Only n=2 works because Euclidean geometry is quadratic; orthogonality adds squared lengths","type":"theorem"},{"name":"Hyperoperation Address Space","description":"AMMR+BMMR→CMMR with hyperoperation-indexed address coordinates","type":"architecture"},{"name":"Tetration Addressing","description":"address = 2↑↑5 giving finite machine address preserving higher-order generative identity","type":"definition"}],"tags":["Pythagorean","Fermat","hyperoperation","AMMR","BMMR","CMMR","tetration"],"layer":"documentation","dependencies":["AMMR","BMMR"],"summary":"Explains why only n=2 works for Pythagorean theorem (quadratic Euclidean geometry) and extends to hyperoperation-indexed address spaces."}
{"file":"6-Documentation/docs/distilled/Prioritization_BlowupPotential_2026-05-11.md","title":"Prioritization — Given Blowup Potential from Minimal Tests","concepts":[{"name":"8-Week Sequence","description":"Math characterization → crypto fast track → tech report → starling → preprint → prose pipeline","type":"recipe"},{"name":"Prime Gap Result","description":"Detector fired with zero calibration on domain never designed for","type":"receipt"},{"name":"Falsification Boundary","description":"Know what detector CAN and CANNOT see before touching noisier domains","type":"invariant"}],"tags":["prioritization","blowup","detector","primes","validation"],"layer":"documentation","dependencies":[],"summary":"Recommended 8-week sequence starting with mathematical characterization of entropy-collapse detector, then crypto fast track and starling validation."}
{"file":"6-Documentation/docs/distilled/ObserverScale_RegimeGate_VoidScar.md","title":"Observer-Scale Regime Gate & VoidScar Fractal Field","concepts":[{"name":"VoidScar Fractal","description":"Hybrid Menger void deletion + Koch boundary growth creating recursive manifold field","type":"definition"},{"name":"Menger-Koch Hybrid","description":"Boundary explodes while mass vanishes: D_MK(n) ~ (9/5)^n scaling ratio","type":"definition"},{"name":"Regime Gate","description":"Observer-scale dependent coupling regime determining field behavior","type":"gate"}],"tags":["VoidScar","Menger","Koch","fractal","regime","observer-scale"],"layer":"documentation","dependencies":["DESI_Menger_Probe_Result"],"summary":"Defines VoidScar Fractal as hybrid Menger-Koch recursive manifold where boundary grows faster than interior scaffold survives."}
{"file":"6-Documentation/docs/distilled/Neurobiological_Hacker_Concept.md","title":"Neurobiological Haker Concept","concepts":[{"name":"Negative Cognition","description":"Mental-state negative: brain emits alive signs but mental-state map has deliberate non-region","type":"definition"},{"name":"Passive Scan","description":"Device passively samples EM side effects from nervous systems, reconstructs state contours","type":"definition"},{"name":"Detectability Hunt","description":"Predator that hunts readable phenomena, not prey","type":"definition"}],"tags":["neurobiological","hacker","negative-cognition","passive-scan","detectability"],"layer":"documentation","dependencies":[],"summary":"Conceptual exploration of negative cognition and passive electromagnetic scanning for state contour reconstruction."}
{"file":"6-Documentation/docs/distilled/Load_Distribution_Concept.md","title":"Load Distribution Concept","concepts":[{"name":"Three-Plane System","description":"Mechanical plane (load/stress), puzzle/admissibility plane (memory-hard proof), Merkle plane (commitment)","type":"architecture"},{"name":"Equihash as Witness","description":"Equihash does not distribute load physically; certifies costly-to-fake search/verification","type":"definition"},{"name":"Invariant Geometry","description":"T·A·ω - T·B·δ gives admissible physical load space from tensegrity/origami","type":"definition"}],"tags":["load-distribution","Equihash","Merkle","tensegrity","origami","proof"],"layer":"documentation","dependencies":[],"summary":"Separates cryptographic bits from mechanical equilibrium: use hash/Merkle/Equihash as admissibility witness, not literal force term."}
{"file":"6-Documentation/docs/distilled/Fractal_Pathfinding_Model.md","title":"Fractal Pathfinding Model","concepts":[{"name":"Unified Search Field","description":"BFS, DFS, Dijkstra, A*, Greedy as different projections of single reconfigurable traversal manifold","type":"architecture"},{"name":"Fractal Search Operator","description":"SolveBind(S_t, q, Θ) → (P_t, R_t, S_{t+1}) with solver mixture Θ","type":"definition"},{"name":"Search as Braid-Field Renormalizer","description":"Each solve emits topology update receipt; solver rewrites graph metric at every scale","type":"definition"},{"name":"Adaptive Metric","description":"Successful corridors get lower resistance; dead ends get higher pressure; repeated structures collapse to macro-nodes","type":"algorithm"}],"tags":["pathfinding","fractal","search","BFS","DFS","Dijkstra","A*","renormalization"],"layer":"documentation","dependencies":[],"summary":"Models five pathfinding algorithms as projections of one reconfigurable traversal manifold that rewrites graph metrics at every scale."}
{"file":"6-Documentation/docs/distilled/Dual_Model_MoE_Concepts.md","title":"Dual Model MoE Concepts","concepts":[{"name":"VLMo","description":"Mixture-of-Modality-Experts with vision, language, and fusion experts","type":"definition"},{"name":"LIMoE","description":"Sparse Language-Image Mixture of Experts with modality-partitioned routing","type":"definition"},{"name":"Bilateral MoE","description":"V-expert, L-expert, B-expert (binding), R-router, M-memory workspace","type":"architecture"}],"tags":["MoE","dual-model","VLMo","LIMoE","multimodal","routing"],"layer":"documentation","dependencies":[],"summary":"Surveys architectures close to bilateral MoE: CLIP-style dual encoders, Flamingo bridges, VLMo modality experts, LIMoE sparse routing."}
{"file":"6-Documentation/docs/distilled/DetectorValidation_MinimalTests_2026-05-11.md","title":"Entropy-Collapse Detector — Minimal Validation Tests","concepts":[{"name":"Test 1: Silent on Dead Sequence","description":"Simple sentence correctly produces no opinion (no temporal dynamics)","type":"receipt"},{"name":"Test 2: Fires on Prime Gaps","description":"14 windows fired (16% hit rate) with zero calibration on primes, correctly at constraint pressure points","type":"receipt"},{"name":"Triple Condition","description":"Braid crossings > K AND σ_q < σ_c AND D_q → 1","type":"invariant"},{"name":"Dense Ranking","description":"Equal values get equal rank; tied pairs excluded from crossing count","type":"algorithm"}],"tags":["detector","validation","primes","entropy-collapse","braid-crossing","Hurst"],"layer":"documentation","dependencies":[],"summary":"Two baseline validation tests: correctly silent on dead sentence sequence, correctly fires on prime gaps with zero calibration."}
{"file":"6-Documentation/docs/distilled/DeepSeek_V4-Pro_Requirements.md","title":"DeepSeek V4-Pro Requirements","concepts":[{"name":"1.6T MoE Architecture","description":"1.6T total parameters, 49B activated per token, 1M-token context, FP4+FP8 mixed precision","type":"definition"},{"name":"Memory Planning Floor","description":"~1 TB aggregate HBM as minimum for V4-Pro inference","type":"definition"},{"name":"Token Rate Bottleneck","description":"tokens/s = min(expert bandwidth, MoE compute, KV cache, GPU-to-GPU all-to-all, scheduler)","type":"invariant"}],"tags":["DeepSeek","V4-Pro","MoE","inference","GPU","requirements"],"layer":"documentation","dependencies":[],"summary":"Hardware requirements for DeepSeek V4-Pro: 1.6T MoE needing 8+ H200 GPUs, NVLink interconnect, vLLM/SGLang serving."}
{"file":"6-Documentation/docs/distilled/DESI_Menger_Probe_Result.md","title":"DESI Menger Probe Result","concepts":[{"name":"16D Packet Vector","description":"V₁₆(k) = q_void ⊕ q_orbit ⊕ q_braid ⊕ η_observer","type":"definition"},{"name":"Menger Hausdorff Dimension","description":"d_H = ln(20)/ln(3) ≈ 2.7268 for Menger sponge addressing","type":"definition"},{"name":"QR State Machine","description":"Void/orbit/braid/observer blocks with Menger sponge geometry in q_void subspace","type":"architecture"},{"name":"Void-Scar Boundary","description":"DESI void structure mapped to Menger sponge with rough evolving interfaces","type":"definition"}],"tags":["DESI","Menger","16D","void","QR-state-machine","fractal"],"layer":"documentation","dependencies":[],"summary":"Probes Menger void QR state machine against DESI void structure, establishing 16D packet vector decomposition and Hausdorff dimension."}
{"file":"6-Documentation/docs/distilled/ChatLog_Math_Synthesis_2026-05-11.md","title":"Chat Log Math Synthesis — 2026-05-11","concepts":[{"name":"16D Canonical Decomposition","description":"V₁₆ = (q_void⁴ᵈ, q_orbit⁴ᵈ, q_braid⁴ᵈ, η_observer⁴ᵈ) with 4D blocks","type":"definition"},{"name":"Master Atlas Equation","description":"𝓐₁₆ = Σₖ Γₖ[Mengerₖ ⊗ Torusₖ ⊗ Braidₖ ⊗ Observerₖ]","type":"definition"},{"name":"Closure Condition","description":"close(k) iff ‖V₁₆(k) - lift(P(V₁₆(k))) - R₁₆(k)‖² = Σᵢ₌₅¹⁶ σᵢ²","type":"invariant"},{"name":"O₄ Projection","description":"O₄(k) = P₁₆→₄(V₁₆(k)) = (field, packet, shear, spectral)","type":"definition"}],"tags":["synthesis","16D","atlas","closure","projection","chat-log"],"layer":"documentation","dependencies":[],"summary":"Filtered math synthesis from chat exports retaining only claims surviving bind test: 16D manifold structure, projection/lift, master atlas equation."}
{"file":"6-Documentation/docs/distilled/BoundaryEigenFire.md","title":"Boundary Eigenfire — The Modal Burn Surface Doctrine","concepts":[{"name":"Modal Burn Surface","description":"Boundary as activated superposition surface where multiple latent values forced into local reality","type":"definition"},{"name":"Boundary Field","description":"B_∂(x) = Proj_∂(Σ λᵢψᵢ(x)) — weighted superposition of eigenmodes projected onto boundary","type":"definition"},{"name":"Modal Basis","description":"8-component shape-state vector: ρ, ∇ρ, T, σ, κ, β, η, ε","type":"definition"},{"name":"λ_YAH Spectrum","description":"Hyper-eigenvalue weights from the λ_YAH hyper-eigenspectrum","type":"definition"}],"tags":["boundary","eigenfire","modal","burn-surface","eigenspectrum","doctrine"],"layer":"documentation","dependencies":["HCMMR"],"summary":"Redefines boundaries as activated modal burn surfaces where multiple latent eigenmode values are forced into simultaneous local reality."}
{"file":"6-Documentation/docs/distilled/Blockchain_HardcodedMath_VortexSignal_2026-05-11.md","title":"Blockchain as Hardcoded Human Math — Vortex Signal","concepts":[{"name":"AMM as Eigenmass","description":"Concentrated liquidity ticks as HCMMR depth levels with stepwise eigenmass","type":"definition"},{"name":"Liquidation Cascade Vortex","description":"Liquidation events as programmed vortexes with eigenmass distribution ρ(H,P)","type":"definition"},{"name":"Tick Crossing as Braid","description":"Upward crossing = σᵢ, downward = σᵢ⁻¹; high frequency → vortex signal","type":"bridge"}],"tags":["blockchain","AMM","liquidation","vortex","eigenmass","HCMMR"],"layer":"documentation","dependencies":["HCMMR"],"summary":"Maps on-chain AMM curves and liquidation cascades to HCMMR vortex detection: tick crossings as braid generators, eigenmass as liquidity depth."}
{"file":"6-Documentation/docs/distilled/AtomicResolution_EntropyCollapse_2026-05-11.md","title":"Atomic Resolution — Entropy Collapse Detector","concepts":[{"name":"Minimal Observable","description":"1D coordinate s_longitudinal along group heading, per individual","type":"definition"},{"name":"Behavioral Atom","description":"Single pairwise overtaking event σᵢ — substrate-invariant across slime mold, fish, starlings, cattle, rats, AMMs","type":"definition"},{"name":"Data Schema Atom","description":"individual_id:u16, timestamp:u32, s_longitudinal:i32 (Q16.16 fixed-point)","type":"definition"},{"name":"Triple Condition","description":"Braid crossings > K, σ_q < σ_c, D_q → 1 — fully computable from N scalar streams","type":"invariant"}],"tags":["atomic-resolution","entropy-collapse","detector","behavioral","overtaking","schema"],"layer":"documentation","dependencies":[],"summary":"Strips entropy-collapse detector to atomic resolution: minimal per-individual observable is 1D longitudinal coordinate, behavioral atom is pairwise overtaking event."}
{"file":"6-Documentation/docs/distilled/ArithmeticSpec_Corrected_2026-05-11.md","title":"Corrected Arithmetic Specification — Entropy-Collapse Detector","concepts":[{"name":"Dense Ranking Rule","description":"Equal values get equal rank; tied pairs excluded from crossing count","type":"algorithm"},{"name":"Crossing Count","description":"W=8: crossings=12 (corrected from 18), K=7 FPR=94.57%, K=21 strict FPR=3.05%","type":"receipt"},{"name":"Hurst Exponent","description":"H=σ_q=0.032 on test series (extremely anti-persistent, n=8 too short for robust estimate)","type":"receipt"},{"name":"Rényi D2","description":"D_q bounded in [0,1]; D_c=1.2 is definition mismatch for this estimator","type":"definition"}],"tags":["arithmetic","correction","braid-crossing","Hurst","Rényi","detector"],"layer":"documentation","dependencies":[],"summary":"Corrected arithmetic for entropy-collapse detector: dense ranking, corrected crossing count 12 (not 18), K=21 strict FPR 3.05%."}
{"file":"6-Documentation/docs/distilled/Alpha_Inverse_137_Derivation.md","title":"α⁻¹ ≈ 137.036 — Fine-Structure Constant Derivation Survey","concepts":[{"name":"Fine-Structure Constant","description":"α⁻¹ = 137.035999084(21) CODATA 2018, dimensionless ratio coupling electron charge to photon field","type":"definition"},{"name":"HCMMR Calibration Reference","description":"α⁻¹ anchored as calibration reference, not derived from first principles in HCMMR","type":"definition"},{"name":"Q16_16 Anchor","description":"alpha_inverse = ⟨8980791⟩ = 137.036 × 65536 in FixedPoint.lean","type":"receipt"}],"tags":["alpha","fine-structure","constant","CODATA","HCMMR","calibration"],"layer":"documentation","dependencies":["Law18_Constants"],"summary":"Survey of geometric/dimensional arguments for why α⁻¹ ≈ 137, with HCMMR anchoring it as calibration reference rather than first-principles derivation."}
{"file":"6-Documentation/docs/distilled/16D_Manifold_Adjustment.md","title":"16D Manifold Adjustment","concepts":[{"name":"16D Shell Atlas","description":"Gap-6 prime-lens shell atlas with hourglass pinch, torus lens, mirrored cone/void, spectral bands","type":"architecture"},{"name":"Composite as Closure Defect","description":"Composites are not mistakes — they become closure defects, NaN0 scars, or residual packets","type":"definition"},{"name":"4D Block Decomposition","description":"q_void (triangles/filled cones), q_orbit (circles/lenses), q_braid (X diagonals), η_observer (color bands)","type":"definition"}],"tags":["16D","manifold","adjustment","shell-atlas","prime","projection"],"layer":"documentation","dependencies":[],"summary":"Adjusts 2D drawings into 16D universe model projections with prime/composite shell structure and 4D block decomposition."}
{"file":"6-Documentation/docs/distilled/0D_genus_layer_infinity_absorption_2026-06-19.md","title":"0D Genus Layer: Absorbing Infinities","concepts":[{"name":"0D Genus Layer","description":"Zero-width layer at genus-0 absorbing all infinities from physics equations (Hawking-Ellis, Vaidya, EFE)","type":"definition"},{"name":"Gabriel's Horn Model","description":"Finite volume (π) + infinite surface area; tip as x→∞ IS the 0D genus layer geometry","type":"definition"},{"name":"Menger-Horn Pipeline","description":"16D→0D dimensional descent like Gabriel's Horn with shrinking cross-section","type":"architecture"},{"name":"Torricelli Paradox Reframed","description":"You can fill coverage domain (finite) but cannot paint its boundary (infinite); 0D layer absorbs painting","type":"definition"}],"tags":["0D-genus","infinity","Gabriel-Horn","Menger","pipeline","compactification"],"layer":"documentation","dependencies":[],"summary":"Resolves infinity requirements from physics equations by embedding them into zero-width 0D genus layer, modeled by Gabriel's Horn tip geometry."}
{"file":"shared-data/artifacts/deepseek_review/prime_gap_entropy_collapse_deepseek_deepseek-v3.2_20260512T033551Z.md","title":"Prime Gap Entropy Collapse DeepSeek v3.2 Review","concepts":[{"name":"Prime Gap Entropy Collapse Detector","description":"Sliding-window detector using braid crossing count, Hurst exponent (σ_q), and correlation dimension (D₂) on prime gaps to identify entropy-collapse motifs.","type":"algorithm"},{"name":"K=7 Braid Threshold","description":"Original non-selective threshold with 94.57% FPR under random-permutation null. Identified as artifact source.","type":"invariant"},{"name":"K=21 Corrected Threshold","description":"Calibrated threshold yielding ~5% FPR under random-permutation null. Strict >21 gives 3.05% FPR; inclusive >=21 gives 5.43%.","type":"invariant"},{"name":"Fusion Rule","description":"Triple condition: braid(t→t+1) AND sigma_q(window t+1) AND D_q(window t+1) targeting turbulent transition into collapsed arrival window.","type":"protocol"},{"name":"Random-Permutation Null","description":"Statistical null model assuming distinct values and uniform marginals; inappropriate for prime gaps due to ties and local dependence.","type":"definition"},{"name":"Sidon Label","description":"Address from a set where all pairwise sums are distinct; powers of 2 are canonical Sidon set for 8 strands.","type":"definition"}],"tags":["prime-gaps","entropy-collapse","braid-crossing","statistical-validation","FPR","permutation-null","deepseek-review"],"layer":"receipt","dependencies":["ArithmeticSpec_Corrected_2026-05-11"],"summary":"DeepSeek v3.2 review validates the prime-gap entropy-collapse detector arithmetic, identifies K=7 as non-selective (94.57% FPR), confirms K=21 as defensible at ~5% FPR, and catalogs 6 failure modes including tied ranks and overlapping windows."}
{"file":"shared-data/artifacts/deepseek_review/prime_gap_entropy_collapse_deepseek_deepseek-v4-flash_continuation_20260512T033849Z.md","title":"Prime Gap Entropy Collapse DeepSeek v4-Flash Continuation","concepts":[{"name":"Canonical Spec Patches","description":"10 explicit warnings and clarifications to add to the canonical spec covering heuristic thresholds, window features, prime-gap null mismatch, multiple testing, and reproducibility.","type":"recipe"},{"name":"Parameter Sensitivity","description":"Results depend on window size (n=8), step size (1), and feature thresholds; small changes can eliminate or create signals.","type":"invariant"},{"name":"Edge Effects","description":"First and last n-1 windows have incomplete neighbors for the fusion rule; must be excluded or treated separately.","type":"recipe"}],"tags":["prime-gaps","statistical-validation","spec-patches","reproducibility","deepseek-review"],"layer":"receipt","dependencies":["Prime Gap Entropy Collapse Detector"],"summary":"Continuation of DeepSeek review providing 10 canonical spec patches including warnings about heuristic thresholds, window features, prime-gap null mismatch, multiple testing, and reproducibility requirements."}
{"file":"shared-data/artifacts/adversarial_review/adversarial_semantics_review_2026-05-31.md","title":"Adversarial Review: Semantics Lean Codebase","concepts":[{"name":"QFactor Double-Scaling Bug","description":"ofNat 65536 creates Q16_16 with raw integer 65536*65536=4294967296 which saturates to q16MaxRaw, producing garbage results in calculateQFactor.","type":"gate"},{"name":"sub_eq_add_neg Overflow","description":"Admitted theorem that is false when b.toInt = q16MinRaw because neg q16MinRaw overflows to q16MaxRaw, off by 1.","type":"theorem"},{"name":"abs_mul_le False Theorem","description":"Admitted theorem with documented counterexamples; downstream modules can derive False from it.","type":"theorem"},{"name":"ofFloat in Compute Paths","description":"942 occurrences of ofFloat in compute paths violating AGENTS.md mandate; undermines fixed-point determinism guarantee.","type":"invariant"},{"name":"Division by Zero Asymmetry","description":"Q16_16 division by zero returns infinity (maxVal) while Int division by zero is silent no-op; creates divergent behavior.","type":"gate"},{"name":"Tautological Eigensolid Convergence","description":"eigensolid_convergence proof is h_eig — hypothesis IS the conclusion; provides no actual convergence guarantee.","type":"theorem"},{"name":"ACI Preservation Theorem","description":"Central safety theorem of SSMS admitted with dependencies on known-false lemmas sub_eq_add_neg and abs_triangle.","type":"theorem"},{"name":"Sidon Slack Underflow","description":"UInt32 subtraction wraps around if slot > 128; no precondition ensures slot ≤ 128 in BraidEigensolid.lean.","type":"gate"},{"name":"AVMIsa Missing Primitives","description":"Prim.addSatQ16 and Prim.subSatQ16 declared but not implemented in evalPrim; always return typeMismatch error.","type":"gate"},{"name":"Q16_16 Constants via ofFloat","description":"pi, e, ln2, sqrt2 defined via ofFloat introducing 1 LSB error; should use ofRatio with rational approximations.","type":"definition"}],"tags":["adversarial-review","lean-verification","q16-16","fixed-point","proof-integrity","false-theorems","ofloat-violation"],"layer":"receipt","dependencies":["FixedPoint.lean","BraidEigensolid.lean","AVM.lean","QFactor.lean","SSMS.lean","AdjugateMatrix.lean"],"summary":"Comprehensive adversarial review of Semantics Lean codebase finding 7 CRITICAL, 12 HIGH, 18 MEDIUM, 9 LOW issues including false admitted theorems, 942 ofFloat violations, tautological convergence proof, and systemic Q16_16 compliance failures."}
{"file":"shared-data/artifacts/adversarial_review/FULL_ADVERSARIAL_REVIEW_2026-05-31.md","title":"Full Adversarial Review — Research Stack","concepts":[{"name":"Verilog Q16_16 Multiply Bug","description":"a_reg * b_reg produces Q32.0 not Q16.16; missing >>16 shift means every hardware computation through the central ALU is off by 2^16.","type":"gate"},{"name":"WGSL Data Races","description":"Pervasive non-atomic += on shared storage buffers from multiple workgroups; all GPU compute results are non-deterministic.","type":"gate"},{"name":"Rust Double-Free","description":"Arc::from_raw on pointer from Arc::as_ptr steals reference count; exploitable memory corruption in thermodynamic.rs.","type":"gate"},{"name":"Shell Injection","description":"format!(\"command -v {command}\") passes unsanitized input to sh -lc; arbitrary command execution in tools/src/lib.rs.","type":"gate"},{"name":"Hardcoded Credentials","description":"30+ files contain plaintext passwords, OAuth secrets, and API keys committed to git.","type":"gate"},{"name":"SHA-256 Padding Bug","description":"Only 62 bits assigned instead of 64-bit big-endian bit count in cff_accelerator.v; all hardware hashes incorrect.","type":"gate"},{"name":"Remote Code Execution Vectors","description":"11 RCE vectors across Python (pickle.load, eval, torch.load, trust_remote_code), Rust (shell injection), and Shell (root password in process list).","type":"gate"},{"name":"Credential Exposure","description":"8 credential exposure sites including production RDS hostname, internal Tailscale IPs, decrypted credentials printed to stdout, and bearer tokens over HTTP.","type":"gate"}],"tags":["adversarial-review","security","verilog","wgsl","rust","python","credential-exposure","rce","memory-safety"],"layer":"receipt","dependencies":["adversarial_semantics_review_2026-05-31"],"summary":"Full-codebase adversarial review scanning ~35,000 source files finding 248 issues (51 CRITICAL, 76 HIGH, 80 MEDIUM, 41 LOW) across Lean, Verilog, WGSL, Rust, Python, TypeScript, and Shell with 11 RCE vectors, 8 credential exposures, and systemic AGENTS.md compliance violations."}
{"file":"shared-data/artifacts/lean_expert_agent/qc_report_2026-05-13.md","title":"QC Report — Physics/ Code Structure & Efficiency","concepts":[{"name":"absDiff Duplication","description":"absDiff function duplicated 4x across DESIInvariant, H0ValveTest, ValveTestSuite, ClusterBHAnchors; should be in Shared.lean.","type":"recipe"},{"name":"scale = 65536 Duplication","description":"scale constant duplicated 6x; should be single shared definition.","type":"recipe"},{"name":"Dead Code","description":"Dead q16_div in DESIModelProjection, dead DESIParam in DESIInvariant, dead ModelParams/Residual/Verdict structures.","type":"recipe"},{"name":"Naming Convention Audit","description":"rD → rd field naming, SCALE vs scale casing inconsistency, Q16.16 arithmetic inconsistency between files.","type":"recipe"}],"tags":["qc-report","lean-structural","duplication","dead-code","naming-conventions","physics"],"layer":"receipt","dependencies":["DESIInvariant.lean","UniversalBridge.lean","DESIModelProjection.lean"],"summary":"QC report finding 4 high-priority structural issues (duplication + dead code), 5 medium-priority (dead structures, consolidation), and 5 low-priority (consistency, naming) across 8 Physics/ files, all building cleanly with 3529 jobs."}
{"file":"shared-data/artifacts/claim_cross_reference_report_2026-05-21.md","title":"Claim Cross-Reference Report: Attack CSVs vs. Research Stack Repo","concepts":[{"name":"Claim Cross-Reference Methodology","description":"Direct grep search across repo followed by file content inspection; classification: DEFENDED, ORPHANED, RENAMED, UNEXPECTED_CONNECTION.","type":"protocol"},{"name":"Epistemic Tag Self-Correction","description":"Repo uses PRIOR ART, PROJECT DATA, INFERENCE, SPECULATIVE tags to self-label claim strength; attack misses this self-correction mechanism.","type":"pattern"},{"name":"Sidon Addressing Novelty","description":"Attack confirms Sidon addressing as genuinely novel; implemented in Rust + Python + Lean.","type":"definition"},{"name":"Conversational Genre Mischaracterization","description":"Attack reads user-requested analogies and thought experiments as scientific claims; assistant consistently warned against literal interpretation.","type":"pattern"},{"name":"Honesty Audit","description":"Repo's boundary statements and epistemic tags are more precise than attack's blunt verdicts; repo is self-critical about its own claims.","type":"pattern"},{"name":"Orphaned Claims","description":"RFS-16096, hydrogen closure η_H=τ/α, and 'Underverse' have zero repo evidence.","type":"definition"}],"tags":["claim-verification","adversarial-attack","epistemic-honesty","cross-reference","sidon-addressing"],"layer":"receipt","dependencies":["CITATION.cff","AGENTS.md","MATH_MODEL_MAP.tsv"],"summary":"Cross-references attack CSVs against repo evidence across number theory, math physics, fractal topology, and framework domains; finds attack is directionally correct but systematically mischaracterizes conversational genre as scientific claims, missing the repo's self-correction mechanisms."}
{"file":"shared-data/data/stack_solidification/theorem_jiggle_dag_2026-05-13.md","title":"Theorem Jiggle DAG","concepts":[{"name":"Theorem Jiggle","description":"Placeholder or vacuous theorem proving trivial statements; fixed by replacing with honest comments or real consistency checks.","type":"pattern"},{"name":"get! Without isSome Guard","description":"Unsafe array access .get! without companion .isSome theorem; fixed by adding intermittency_midpoint_some companion theorem.","type":"gate"},{"name":"Heuristic Constants","description":"Moody chart slopes, calibrated w0, wa with no SM derivation — acknowledged as heuristic but acceptable for engineering bridge.","type":"definition"}],"tags":["theorem-jiggle","lean-verification","physics","q16-16","build-receipt"],"layer":"receipt","dependencies":["PhotonTorsionProbe.lean","DESIInvariant.lean","UniversalBridge.lean"],"summary":"Audited 82 theorems across Physics/ files, fixed 3 jiggles (placeholder theorems, vacuous bounds, missing guards), acknowledged 10 known jiggles as acceptable heuristics, with 69 clean theorems (84%) and 3529-job zero-error build."}
{"file":"shared-data/data/stack_solidification/rg_flow_assumption_dag_2026-05-13.md","title":"RG Flow Assumption DAG","concepts":[{"name":"SM Beta Functions","description":"Standard 1-loop RGEs for SM couplings validated by LEP, LHC, g-2 to 10^-12; Generation 1 — SOLID.","type":"theorem"},{"name":"omega = |β|/|g|","description":"Well-defined dimensionless number at EW scale (0.05775); calling it 'torsion' is a metaphysical leap with no geometric justification.","type":"definition"},{"name":"alpha = max|β|/(4π)","description":"Invented relation with no Lagrangian term; 1-loop formula gives 10% error, 2-loop correction retrofitted to match α=1/137.036.","type":"definition"},{"name":"w0 Projection Formula","description":"Heuristic projection with no QFT derivation; uses ΛCDM best-fit values to predict deviation from ΛCDM — circular.","type":"definition"},{"name":"wa from SM Running","description":"SM gives wa≈-0.06 from Higgs running; DESI observes wa=-0.59±0.25. Factor 10 gap — most interesting tension.","type":"definition"},{"name":"CMB from omega","description":"Q≈ω·α/π predicts CMB fluctuation amplitude 13× above measured; handwaved as Saha approximation error.","type":"definition"}],"tags":["rg-flow","renormalization-group","cosmology","dark-energy","assumption-tracing","heuristic"],"layer":"receipt","dependencies":["DESIModelProjection.lean","CMBTorsion.lean","TorsionWall.lean","CouplingRotation.lean"],"summary":"Traces 7 generations of RG flow assumptions; Gens 1-2 pass inspection (SM beta functions solid, omega defined but mislabeled), Gens 3-7 are invented/heuristic/broken; recommends deleting CMBTorsion.lean and TorsionWall.lean unless alpha formula gets proper derivation."}
{"file":"shared-data/data/stack_solidification/qc_witness_fix_dag_2026-05-13.md","title":"QC Fix DAG — Missing Witnesses","concepts":[{"name":"Missing Witness Fix","description":"Added #eval witnesses and annotations to 10 files that lacked computational verification for their definitions.","type":"recipe"}],"tags":["qc-fix","lean-witnesses","eval","build-receipt"],"layer":"receipt","dependencies":["Q16Utils.lean","DESIModelProjection.lean","QCLEnergy.lean","StringStarConstants.lean"],"summary":"Added missing #eval witnesses and annotations to 10 Physics/ files; lake build passes."}
{"file":"shared-data/data/stack_solidification/qc_unused_imports_fix_dag_2026-05-13.md","title":"QC Fix DAG — Unused Imports Removal","concepts":[{"name":"Unused Import Removal","description":"Removed redundant imports from 6 files; kept imports that are directly used. Verified by 3530-job lake build.","type":"recipe"}],"tags":["qc-fix","lean-imports","dead-code","build-receipt"],"layer":"receipt","dependencies":["BindPhysics.lean","Interaction.lean","QCLEnergy.lean","StringStarConstants.lean","NBody.lean","Tests.lean"],"summary":"Removed unused imports from 6 Physics/ files while preserving all directly-used imports; 3530-job build passes."}
{"file":"shared-data/data/stack_solidification/qc_naming_round2_fix_dag_2026-05-13.md","title":"QC Naming Round 2 Fix DAG","concepts":[{"name":"Naming Convention Enforcement","description":"Completed 20 renames across 4 files converting snake_case to camelCase per AGENTS.md §2 naming conventions.","type":"recipe"},{"name":"Hermite Spline Constants","description":"RE_LAMINAR→reLaminar, RE_TURBULENT→reTurbulent, Y0→y0, Y1→y1, H_M0→hM0, H_M1→hM1 in UniversalBridge.lean.","type":"definition"}],"tags":["qc-fix","naming-conventions","camelcase","lean-structural","build-receipt"],"layer":"receipt","dependencies":["UniversalBridge.lean","QCLEnergy.lean","StringStarConstants.lean","NBody.lean"],"summary":"Completed 20 renames across 4 files converting snake_case to camelCase; verified cross-file references, 3530-job build passes."}
{"file":"shared-data/data/stack_solidification/qc_naming_fix_dag_2026-05-13.md","title":"QC Fix DAG — Naming Convention Fixes","concepts":[{"name":"LawfulInteraction Rename","description":"Renamed to lawfulInteraction across Conservation.lean, Interaction.lean, Tests.lean (3 files).","type":"recipe"},{"name":"FaithfulMeasurement Rename","description":"Renamed to faithfulMeasurement in Projection.lean and Tests.lean (2 files).","type":"recipe"},{"name":"Q16 Constant Naming","description":"Renamed G_const→gConst, c_const→cConst, hbar_const→hbarConst, kB_const→kBConst in StringStarConstants.lean.","type":"recipe"}],"tags":["qc-fix","naming-conventions","camelcase","cross-file-references","build-receipt"],"layer":"receipt","dependencies":["Conservation.lean","Projection.lean","Interaction.lean","SuperpositionalBoundaryLayers.lean","QCLEnergy.lean","StringStarConstants.lean","DESIModelProjection.lean","ValveTestSuite.lean","Tests.lean"],"summary":"Renamed 40+ symbols from snake_case to camelCase across 9 files; all cross-references updated; 3530-job build passes."}
{"file":"shared-data/data/stack_solidification/qc_l13_l14_fix_dag_2026-05-13.md","title":"QC Fix DAG — L13/L14: DESIInvariant Naming & Precision","concepts":[{"name":"rD→rd Field Rename","description":"Renamed DESIObservation.rD to rd for camelCase consistency.","type":"recipe"},{"name":"rdDr1/rdDr2 Precision Fix","description":"Changed rdDr1 from 147 to 14709 and rdDr2 from 147 to 14718 (×100) for sub-Mpc precision.","type":"recipe"}],"tags":["qc-fix","naming","precision","desi","build-receipt"],"layer":"receipt","dependencies":["DESIInvariant.lean"],"summary":"Renamed rD→rd field and increased BAO sound horizon precision to ×100 (147→14709/14718) in DESIInvariant.lean; 3530-job build passes."}
{"file":"shared-data/data/stack_solidification/qc_l10_fix_dag_2026-05-13.md","title":"QC Fix DAG — L10: h00/h01 Helper Factoring","concepts":[{"name":"hermiteSharedTerms Helper","description":"Private helper factoring shared Q16.16 arithmetic (t2, t3, term3, term2) from h00 and h01 basis functions.","type":"recipe"}],"tags":["qc-fix","code-deduplication","hermite-spline","q16-16","build-receipt"],"layer":"receipt","dependencies":["UniversalBridge.lean"],"summary":"Factored shared Q16.16 arithmetic into hermiteSharedTerms helper, reducing duplication in h00/h01 basis functions; 3530-job build passes."}
{"file":"shared-data/data/stack_solidification/qc_flagger_build_dag_2026-05-13.md","title":"QC Flagger Build DAG — Automated Inspection Tool","concepts":[{"name":"lean_qc_flagger","description":"Automated 5-point inspection tool for Lean files: structural health, naming conventions, Q16_16 compliance, proof quality, dependency analysis.","type":"tool"},{"name":"QC Flagger Protocol","description":"5-point inspection: structural health (sorry/axiom count), naming (camelCase check), Q16_16 compliance (Float detection), proof quality (companion theorems), dependency analysis (unused imports).","type":"protocol"}],"tags":["qc-tooling","lean-inspection","automated-verification","scripts"],"layer":"receipt","dependencies":["AGENTS.md"],"summary":"Built lean_qc_flagger.py automated 5-point inspection tool covering structural health, naming, Q16_16 compliance, proof quality, and dependencies; tested on 20 Physics/ files with 227 issues found (0 ERROR)."}
{"file":"shared-data/data/stack_solidification/qc_f01_fix_dag_2026-05-13.md","title":"QC Fix DAG — F01: 7 sorry Theorems","concepts":[{"name":"F01 Q16_16 FixedPoint Theorems","description":"7 theorems examined: 6 PASS (add_total, mul_total, div_total, round_valid, mul_no_overflow, E_0_bounds), 1 FAIL (convergence_to_fixed_point requires Banach fixed-point theorem).","type":"theorem"},{"name":"convergence_to_fixed_point Quarantine","description":"Theorem quarantined because it requires Banach fixed-point theorem not available in Mathlib.","type":"gate"}],"tags":["qc-fix","lean-proofs","q16-16","fixed-point","banach","quarantine"],"layer":"receipt","dependencies":["F01_Q16_16_FixedPoint.lean"],"summary":"Examined 7 sorry theorems in F01_Q16_16_FixedPoint.lean; proved 6 via exact/simp tactics, quarantined convergence_to_fixed_point as it requires Banach fixed-point theorem; 3530-job build passes."}
{"file":"shared-data/data/stack_solidification/qc_consolidated_fix_dag_2026-05-13.md","title":"QC Consolidated Fix DAG","concepts":[{"name":"Consolidated QC DAG","description":"Mermaid DAG aggregating all QC fixes: L10 (helper factoring), L13/L14 (naming/precision), F01 (sorry proofs), flagger tool.","type":"receipt"},{"name":"QC Resolution Rate","description":"13 of 14 original QC issues resolved, 1 quarantined (convergence_to_fixed_point).","type":"gate"}],"tags":["qc-consolidated","lean-verification","build-receipt","dag"],"layer":"receipt","dependencies":["qc_l10_fix_dag","qc_l13_l14_fix_dag","qc_f01_fix_dag","qc_flagger_build_dag"],"summary":"Consolidated DAG of all QC fixes: 9 issues fixed, 1 quarantined, 1 new tooling (lean_qc_flagger.py); 3530-job zero-error build."}
{"file":"shared-data/data/stack_solidification/prime_gap_k21_rerun_receipt_2026-05-11.md","title":"Prime Gap Entropy-Collapse Rerun Receipt — K=21","concepts":[{"name":"K=21 Rerun","description":"Rerun of prime-gap detector with corrected strict threshold crossing_count>21; 38 strict fires across 999,991 windows in first 1M primes.","type":"receipt"},{"name":"Braid-Tail-Only Counts","description":"Counts using only the braid component without sigma_q/D2 filter; shows braid component alone fires much more frequently.","type":"gate"},{"name":"Strict Fire Examples","description":"First 5 strict fires at t=51541,71717,88616,117020,136640 with crossing counts 22-23 and alternating small/large gap motifs.","type":"definition"}],"tags":["prime-gaps","k21-threshold","entropy-collapse","rerun","statistical-validation"],"layer":"receipt","dependencies":["ArithmeticSpec_Corrected_2026-05-11"],"summary":"Reruns prime-gap entropy-collapse detector with corrected K=21 threshold; original K=7 signal (86,565 fires) reduces to 38 strict fires (0.0038%), confirming the original was an artifact of non-selective threshold."}
{"file":"shared-data/data/stack_solidification/full_stack_assumption_dag_2026-05-13.md","title":"Full-Stack Assumption DAG","concepts":[{"name":"Full-Stack Audit","description":"78 files audited, ~280 assumptions identified across Physics/Lean, Infrastructure/Shim, and 5-Applications.","type":"receipt"},{"name":"Assumption Severity Grades","description":"Green (solid proofs), Yellow (structurally correct but claims not proven), Red (0 theorems, claims in comments only).","type":"gate"},{"name":"Physics Module Grades","description":"PIST.lean Green (17+ real proofs), BraidedFieldPaths Yellow, BraidCross/Law19_VoidScar/BoundaryEigenFire/HyperEigenSpectrum/FAMM/BraidBracket/BraidStrand/BraidField/NBody Red.","type":"definition"},{"name":"Infrastructure Heuristic Assumptions","description":"190+ heuristic assumptions across ~22 receipt generators; dominant failure mode: metaphors written as equations.","type":"definition"},{"name":"PIST Compression","description":"PIST 'compression' is coordinate remapping, not compression; multiple scripts import shock physics as metaphor.","type":"definition"}],"tags":["full-stack-audit","assumption-tracing","physics","infrastructure","severity-grading"],"layer":"receipt","dependencies":["PIST.lean","BraidCross.lean","FAMM.lean","MengerSpongeFractalAddressing.lean"],"summary":"Full-stack audit of 78 files finding ~280 assumptions; PIST.lean is Green (17+ real proofs), 10+ modules are Red (0 theorems, claims in comments only), Infrastructure has 190+ heuristic assumptions, and NBody.lean has a broken theorem referencing nonexistent lemma."}
{"file":"shared-data/data/stack_solidification/deterministic_build_receipt_2026-05-13.md","title":"Deterministic Build Receipt","concepts":[{"name":"DESI DR2 Constants","description":"Hardcoded Int literals for w₀=-58327, w_a=-31457, w₀(ΛCDM)=-65536, H₀=6826, Ω_m=19312, σ₈=52953, r_d=147; zero Float.","type":"definition"},{"name":"native_decide Theorems","description":"17 theorems verified by native_decide: w0_above_LCDM, wa_below_LCDM, w0_in_3sigma, wa_in_3sigma, omegam_in_3sigma, model_w0_direction_aligns, model_wa_direction_aligns, residual bounds.","type":"theorem"},{"name":"Determinism Guarantee","description":"Every value is a hardcoded Int literal, verified by native_decide (compile-time deterministic), verified by #eval (same result every build), within Lean namespace (no global mutable state).","type":"invariant"},{"name":"Adjacent Coprime Classification","description":"30 theorems verified by native_decide for Fibonacci, Bad, Ex3, Bad2, Ex5 examples with pairwise gcd checks.","type":"theorem"}],"tags":["deterministic-build","desi-dr2","q16-16","native-decide","build-receipt"],"layer":"receipt","dependencies":["DESIInvariant.lean","DESIModelProjection.lean","AdjacentCoprimeClassification.lean"],"summary":"Deterministic build receipt with 3529 jobs, 0 errors; all values are hardcoded Int literals verified by native_decide and #eval; 17 theorems in DESI modules, 30 in AdjacentCoprimeClassification; zero Float arithmetic."}
{"file":"shared-data/data/stack_solidification/desi_model_projection_receipt_2026-05-13.md","title":"DESI Model Projection Receipt","concepts":[{"name":"DESI DR2 Observational Invariants","description":"w₀=-0.89, w_a=-0.48, Ω_m=0.2947, σ₈=0.808, H₀=68.26, r_d=147 Mpc with Q16_16 encodings.","type":"definition"},{"name":"16D Menger/Koch/Gabriel-Horn Fiber Model","description":"Model projected onto DESI DR2 observables; w₀ calibrated (not predicted), w_a/Ω_m/σ₈ are structural predictions.","type":"architecture"},{"name":"Boundary Statement","description":"Explicit statement: NOT a cosmological model, NOT a replacement for ΛCDM; IS a receipt that Menger/Koch/Gabriel-Horn geometry reproduces direction and sign of observed dark-energy deviation.","type":"invariant"},{"name":"Verified Geometry Constants","description":"Menger d_H=2.7268, Koch D_K=1.2619, divergence base=1.8, horn volume=finite, horn surface α=0.007, torsion β=0.003; all proven in Lean.","type":"theorem"},{"name":"w_a Tension","description":"Model predicts -0.55, DESI observes -0.48; within 1σ but model central value more negative; worth tracking as precision improves.","type":"definition"}],"tags":["desi-dr2","cosmology","dark-energy","menger","koch","gabriel-horn","q16-16","lean-proofs"],"layer":"receipt","dependencies":["DESIInvariant.lean","DESIModelProjection.lean"],"summary":"DESI model projection receipt documenting 17 native_decide theorems comparing 16D Menger/Koch/Gabriel-Horn fiber model against DESI DR2; all observables consistent within 1σ; w₀ calibrated not predicted; explicit boundary statement that this is NOT a cosmological model."}
{"file":"shared-data/data/stack_solidification/codebase_memory_receipt_2026-05-13.md","title":"Research Stack Receipt: Persistent Codebase Memory","concepts":[{"name":"FAMM-Based Codebase Memory","description":"Rust crate implementing persistent codebase memory with DualMapMemory (ahead/behind maps), DomainBank (1000-cell FAMM bank), and scar differentials.","type":"architecture"},{"name":"CodeDomain","description":"7 domains (0-Core through 6-Docs) for organizing codebase artifacts.","type":"definition"},{"name":"CodeCell","description":"Artifact with path, type, data, delay (staleness), delay_mass (uncertainty), version_hash.","type":"definition"},{"name":"DualMapMemory","description":"ahead (speculative) + behind (committed) + per-domain scar differentials; commit_if_admissible checks |Delta| <= epsilon.","type":"architecture"},{"name":"MemoryAccessReceipt","description":"Receipt emitted by observe/commit operations for auditability.","type":"receipt"}],"tags":["famm","codebase-memory","rust","persistent-state","dual-map","scar-differentials"],"layer":"receipt","dependencies":["FAMM.lean"],"summary":"Built FAMM-based persistent codebase memory Rust crate with 7 CodeDomains, 1000-cell DomainBank, DualMapMemory with scar differentials; 6 tests pass; 3 Lean modules quarantined due to naming collisions."}
{"file":"shared-data/data/stack_solidification/m4_rydberg_preregistration_receipt_2026-05-22.md","title":"M4 Receipt — Rydberg 1/n Experimental Test Pre-Registration","concepts":[{"name":"Rydberg 1/n Prediction","description":"Fractional frequency shift Δν/ν of rotational transitions in high-n circular Rydberg states scales as 1/n with coefficient C=7/27≈0.259.","type":"theorem"},{"name":"Pre-Registration Lock","description":"Prediction coefficient C=7/27 and test states [40..100] fixed on 2026-05-22; not subject to post-hoc modification.","type":"invariant"},{"name":"Falsification Criteria","description":"If |Δν/ν(n) - C/n| > 2σ for ≥3 distinct n values in [40,100], prediction falsified; if ≥5 of 7 test states consistent, provisionally confirmed.","type":"gate"},{"name":"RydbergExperimentalTest Module","description":"Lean module with predictedFracShift, uncertainty envelopes, fracShiftConsistent, testStates, minConsistentStates, falsificationThreshold, PreRegistration structure, 4 theorems + 7 #eval! witnesses.","type":"spec"}],"tags":["rydberg","pre-registration","experimental-test","spectroscopy","lean-formalization","falsifiable"],"layer":"receipt","dependencies":["RydbergExperimentalTest.lean"],"summary":"Pre-registered experimental test predicting Δν/ν = (7/27)/n for high-n Rydberg states; formalized in Lean with honest uncertainty envelopes, falsification criteria, and 7 test states; awaiting ETH Zürich experimental data."}
{"file":"shared-data/data/stack_solidification/m3_honest_uncertainty_bounds_receipt_2026-05-22.md","title":"M3 Receipt — Honest Uncertainty Bounds Fix","concepts":[{"name":"PredictedValue Structure","description":"Structure with central/lower/upper/sigma fields for honest uncertainty envelopes; replaces exact-match claims.","type":"definition"},{"name":"Exact-Match Replacement","description":"Replaced 6 '0.00% error' exact-match theorems with honest uncertainty envelopes using residualBounded and percentResidual.","type":"recipe"},{"name":"Calibration vs Prediction","description":"w₀ is calibrated (set equal to DESI central value), not predicted; residual bounded at 0σ by design.","type":"invariant"},{"name":"Fine Structure Constant Honest Bound","description":"Changed from residual=0 to residual≤66 (Q16_16 resolution); residual≈1.7×10⁻⁶ well within fixed-point truncation.","type":"definition"}],"tags":["uncertainty-bounds","honest-reporting","q16-16","desi","fine-structure","calibration"],"layer":"receipt","dependencies":["UncertaintyBounds.lean","DESIModelProjection.lean","Law18_Constants.lean"],"summary":"Replaced 6 exact-match '0.00% error' claims with honest uncertainty envelopes using PredictedValue structure; clarified w₀ calibration vs prediction; fine-structure constant residual bounded at Q16_16 resolution."}
{"file":"shared-data/data/stack_solidification/credential_server_recovery_receipt_2026-05-17.md","title":"Credential Server & PQ SSH Recovery Receipt","concepts":[{"name":"Credential Server","description":"HTTP API at 172.245.19.182:8444 serving credentials for 8 providers (deepseek, quandela, wolfram_alpha, gemini, ollama, venice, bedrock, linear).","type":"architecture"},{"name":"Post-Quantum SSH","description":"OpenSSH 10.0p2 with ML-KEM + X25519 hybrid KEX (mlkem768x25519-sha256); Ed25519 host keys; legacy DSA/SSHv1 removed.","type":"protocol"},{"name":"Credential Provider","description":"Client-side module querying microVM for credentials; resolution chain: rds → remote → config_file → env.","type":"tool"},{"name":"Credential Recovery","description":"Recovery steps: extract keys from Research-Stack-Archive-2026-05-12.tar, run recover_credential_server.sh, verify /status endpoint.","type":"recipe"}],"tags":["credential-server","post-quantum-ssh","ml-kem","recovery","microvm","tailscale"],"layer":"receipt","dependencies":["recover_credential_server.sh","credential_provider.py"],"summary":"Documents credential server deployment on RackNerd microVM with 8 provider backends, post-quantum SSH (ML-KEM+X25519 hybrid), and recovery procedure from Research-Stack-Archive."}
{"file":"shared-data/data/stack_solidification/rds_substrate_provisioning_receipt_2026-05-17.md","title":"RDS Substrate Provisioning Receipt","concepts":[{"name":"RDS Substrate","description":"PostgreSQL 17.7 on aarch64 at database-1-instance-1.cghu8yqogqwo.us-east-1.rds.amazonaws.com:5432; IAM auth, SSL required.","type":"architecture"},{"name":"Provisioned Schemas","description":"4 schemas (credential_store, topology, knowledge, ingestion) with 9 tables covering encrypted credentials, node topology, pgvector embeddings, and job queue.","type":"spec"},{"name":"pgvector Knowledge Storage","description":"HNSW-indexed pgvector(1536) embeddings table for document chunk vectors.","type":"architecture"},{"name":"Credential Ingestion","description":"6 providers (bedrock, deepseek, ollama, quandela, venice, wolfram_alpha) ingested with classification levels and node assignments.","type":"recipe"}],"tags":["rds","postgresql","pgvector","credential-store","topology","knowledge-graph"],"layer":"receipt","dependencies":["provision_schema.py","credential_provider.py"],"summary":"Provisioned PostgreSQL 17.7 RDS as central data substrate with 4 schemas (credential_store, topology, knowledge, ingestion), pgvector HNSW embeddings, and 6 ingested credential providers."}
{"file":"shared-data/data/stack_solidification/credential_provider_deployment_receipt_2026-05-17.md","title":"Credential Provider Deployment Receipt","concepts":[{"name":"apiProvider Service","description":"New ServiceKind added to TopologyNode.lean with [.network] hardware requirements and 1 Q16_16 cost per tick.","type":"definition"},{"name":"Source Credential Extraction","description":"6 API keys extracted from Research-Stack-Archive-2026-05-12.tar: DeepSeek, Quandela, Wolfram Alpha, Gemini, Ollama, Venice.","type":"recipe"},{"name":"Credential Provider Module","description":"Python module credential_provider.py with resolve_credential(provider) interface; resolution chain: rds → remote → config_file → env.","type":"tool"}],"tags":["credential-provider","topology","api-provider","deployment","microvm"],"layer":"receipt","dependencies":["TopologyNode.lean","credential_provider.py","embedded_surface/server.py"],"summary":"Deployed apiProvider service to microVM topology; extracted 6 API keys from archive; created credential_provider.py with multi-source resolution chain; Lean verification blocked by pre-existing FixedPoint.lean failures."}
{"file":"e2e/E2E_MASTER_RECEIPT.md","title":"E2E Master Receipt — End-to-End Trace for E = mc²","concepts":[{"name":"E2E Master Trace","description":"8-step end-to-end pipeline processing E=mc² from raw LaTeX through EquationShape, spectral profile, Sidon address, chaos game, Finsler metric, QUBO, QAOA, Hachimoji state, to SHA-256 receipt.","type":"receipt"},{"name":"EquationShape Parsing","description":"Structural signature ⟨n_vars=3, n_ops=2, max_depth=1, n_quantifiers=0, n_relations=1⟩ for E=mc²; proven by rfl.","type":"theorem"},{"name":"Sidon Address","description":"8-element Sidon address [4,16,16,1,16,1,16,8] as spectral fingerprint; proven valid by simp.","type":"theorem"},{"name":"Chaos Game Basin Convergence","description":"Deterministic Sidon-guided chaos game converging to q_braid basin in 1390 steps; IFS contraction α=0.5.","type":"algorithm"},{"name":"Finsler Metric Construction","description":"F = α(Fisher) + β(torsion drift) Randers metric; α=0.4167 base cost, β=0.1500 drift strength.","type":"definition"},{"name":"QUBO Encoding","description":"8 binary variables, 36 couplings encoding Finsler path cost as quadratic unconstrained binary optimization.","type":"algorithm"},{"name":"QAOA Circuit","description":"p=2 depth, 8 qubits, approximation ratio >0.95; bitstring [1,0,0,0,0,0,0,0] selecting Φ state.","type":"algorithm"},{"name":"Hachimoji State Φ","description":"beautifulTopologicalFolding regime, phase 0°, forward direction, ambidextrous chirality; proven by rfl.","type":"theorem"},{"name":"Merkle Receipt Hash","description":"SHA-256 hash of canonical JSON (sorted keys, no whitespace) of all 8 step witnesses; any change invalidates receipt.","type":"receipt"}],"tags":["e2e-trace","e-mc2","equation-shape","sidon-address","chaos-game","finsler","qubo","qaoa","hachimoji","merkle","lean-proofs"],"layer":"receipt","dependencies":["E2EMasterTrace.lean","BinnedFormalizations.lean","EquationFractalEncoding.lean","TransportTheory.lean","HachimojiSubstitution.lean","SidonSets.lean","chaos_game_16d.py","qaoa_adapter.py"],"summary":"Complete 8-step E2E trace for E=mc²: 3 steps PROVEN (shape, Sidon, Hachimoji), 3 COMPUTED (chaos game, QAOA, hash), 2 STATED with sorry (Finsler, QUBO); 15 top-level theorems, receipt SHA-256 committed."}
{"file":"library/MASTER_LIBRARY_RECEIPT.md","title":"Master Receipt: Chentsov-Hachimoji Library Integration","concepts":[{"name":"Chentsov's Uniqueness Theorem","description":"Fisher information metric is the unique Riemannian metric on the 8-state Hachimoji probability simplex; proven with zero sorry in ChentsovFinite.lean.","type":"theorem"},{"name":"HachimojiCodec Pipeline","description":"5-stage deterministic pipeline: Parse → Classify → Receipt → Admit → Emit; converts equations to certified emit stamps.","type":"architecture"},{"name":"Fisher-Metric Classification","description":"Equations classified by Fisher-metric distance on the Chentsov-unique simplex; thresholds forced by the metric, not hand-tuned.","type":"algorithm"},{"name":"Triple RRC Admission","description":"Three gates: typeAdmissible (structural type match), projectionAdmissible (Fisher distance in region), mergeAdmissible (both pass).","type":"gate"},{"name":"Hachimoji States","description":"8 states: ADMIT(A), TRACE(T), GROUND(G), CHALLENGE(C), BIND(B), SEARCH(S), PROOF(P), ZERO(Z) with Fisher distance ranges.","type":"definition"},{"name":"Deterministic Classification","description":"No randomness, no ML, no external state; same equation always produces same state, receipt, and stamp.","type":"invariant"}],"tags":["chentsov","hachimoji","fisher-metric","codec","classification","admission-gates","lean-proofs"],"layer":"receipt","dependencies":["ChentsovFinite.lean","HachimojiCodec.lean","hachimoji_codec.py"],"summary":"Integrates Chentsov's uniqueness theorem (Fisher metric is unique on Δ⁷, proven zero sorry) with HachimojiCodec 5-stage pipeline; 12/12 test equations pass; 7/12 admitted via triple RRC gating; receipt hash committed."}
{"file":"library/codec_receipt.md","title":"Hachimoji Codec — Library Receipt","concepts":[{"name":"EquationShape","description":"5-field structure: n_vars, n_ops, max_depth, n_quantifiers, n_relations extracted from equation text.","type":"definition"},{"name":"HachimojiState","description":"8 Greek states (Φ, Λ, Ρ, Κ, Ω, Σ, Π, Ζ) with conditions based on structural features.","type":"definition"},{"name":"LogogramReceipt","description":"Receipt with regime (beautifulTopologicalFolding/tornManifoldRegime/horribleManifoldTearing) and 5 witness booleans.","type":"receipt"},{"name":"Admission Gates","description":"typeAdmissible, projectionAdmissible (payloadBound ∨ (tearBoundary ∧ ¬detachedMass)), mergeAdmissible (¬residualLane).","type":"gate"},{"name":"Regime Table","description":"Maps each Hachimoji state to regime and 5 boolean witness flags determining admission outcome.","type":"spec"}],"tags":["hachimoji","codec","equation-shape","admission-gates","regime-table","deterministic"],"layer":"receipt","dependencies":["hachimoji_codec.py","HachimojiCodec.lean"],"summary":"Hachimoji codec receipt documenting 5-stage pipeline (Parse→Classify→Receipt→Admit→Emit), 8 Hachimoji states with regime tables, 3 admission gates, 6/6 tests passing, and full determinism guarantee."}
{"file":"library/CONCEPTUAL_UPGRADE_RECEIPT.md","title":"Conceptual Upgrade Receipt — Operator-Theoretic Hachimoji Codec V2","concepts":[{"name":"HachimojiState4D","description":"4-dimensional state descriptor: Phase × Chirality × Direction × Regime; 144 possible 4-tuples, only 8 canonical states satisfy all invariants.","type":"definition"},{"name":"Consistency Invariant","description":"6 rules encoding structural coherence: Phase-Direction, Axis-Chirality, Beautiful Phase Range, Horrible Phase Range, Left Chirality-Direction, Regime Half-Plane.","type":"invariant"},{"name":"consistency_error_bound Theorem","description":"¬consistencyInvariant(s) → admission(s, shape) = QUARANTINE; deterministic structural guarantee replacing statistical reasoning.","type":"theorem"},{"name":"Counterexample Detection","description":"Detects old pipeline E∘S failure modes: DEGENERATE_PROJECTION, EMPTY_EIGENSPACE, NO_SPECTRAL_STRUCTURE, SAMPLING_NON_TERMINATION, BASE_RATE_LEAKAGE.","type":"gate"},{"name":"Base-Rate Leakage","description":"Old spectral pipeline appeared to work because Fiedler vector is near center of eigenspace distribution; any estimator returning mean gets ~92.5% purity for free.","type":"definition"},{"name":"Operator-Theoretic Shift","description":"From statistical reasoning ('92.5% purity') to structural reasoning ('4-tuple satisfies all 6 invariants'); no sampling, no randomness.","type":"pattern"}],"tags":["hachimoji-v2","operator-theoretic","consistency-invariant","counterexample-detection","base-rate-leakage","lean-proofs"],"layer":"receipt","dependencies":["HachimojiCodecV2.lean","hachimoji_codec_v2.py","counterexample_detector.py","ChentsovFinite.lean"],"summary":"Upgrades Hachimoji codec from 1D regime classifier to 4D state descriptor with 6-rule consistency invariant, counterexample detection for old pipeline failure modes, and theorem-backed deterministic structural guarantee; 17/17 + 14/14 + 10/10 tests pass."}
{"file":"lean_binned/receipts/BIND_OPT_RECEIPT.md","title":"BIND Optimization Receipt v2.0","concepts":[{"name":"Bind Semigroup Cocycle","description":"Reformulated BindAssociative as semigroup cocycle condition: f(ab,c)+f(a,b) = f(a,bc)+f(b,c); well-typed, mathematically meaningful, general for any A and M.","type":"theorem"},{"name":"Five Bind Axioms","description":"Associativity (cocycle), Identity (monoid), Metric Monotonicity, Triangle Inequality, Torsion Awareness; all as Lean classes extending Associative.","type":"definition"},{"name":"T1 SIM Reduces to Fisher-Rao","description":"When τ=0, torsion tensor vanishes, Fisher metric is unique monotone metric by Chentsov's theorem, SIM flow reduces to Fisher-Rao natural gradient flow.","type":"theorem"},{"name":"S1-S4 Specializations","description":"S1_FisherRaoBind (τ=0, commutative), S2_AlcubierreBind (τ=warp), S3_MOIM_Bind (empirical), S4_MetabolicBind (evolving, genus-3).","type":"definition"},{"name":"s1_fisher_symmetry","description":"Fisher information matrix is symmetric by commutativity of real multiplication; proven by rw [mul_comm].","type":"theorem"},{"name":"Vacuous Theorem Elimination","description":"Replaced 4 True:=by trivial theorems (T1-T4) with proper mathematical statements with sorry and detailed proof sketches.","type":"recipe"}],"tags":["bind-axioms","cocycle","fisher-rao","chentsov","coherence","lean-proofs","s1-s4"],"layer":"receipt","dependencies":["BindAxioms.lean","T1_Coherence.lean","InformationManifold.lean"],"summary":"Rewrites bind axiomatization from broken ill-typed associativity to semigroup cocycle condition; eliminates 4 vacuous True:=by trivial theorems with proper statements; adds S1-S4 specializations; 4 proven theorems, 10 sorry with proof sketches."}
{"file":"lean_binned/receipts/CLOSED_TRACE_RECEIPT.md","title":"Closed Trace Receipt — End-to-End Integration","concepts":[{"name":"Closed Trace v1","description":"6-step end-to-end trace for E=mc²: EquationShape → 5D Manifold → Sidon Address → Chaos Game → Bind Cost → Merkle Hash; 9 proven, 3 stated.","type":"receipt"},{"name":"5D Manifold Projection","description":"complexity=0.667, abstraction=0.0, verification=1.0, cross_domain=0.5, utility=0.42 for E=mc²; proven by rfl.","type":"theorem"},{"name":"Bind Cost (Fisher-Rao)","description":"bind_cost≈1.208 using Fisher-Rao distance with BindTriangleInequality axiom; stated with sorry.","type":"definition"},{"name":"Merkle Tree Hash Chain","description":"SHA-256 receipt hash computed from all 5 witness hashes; singleton root equals element, mixing is non-commutative.","type":"receipt"}],"tags":["closed-trace","e2e","equation-shape","sidon-address","chaos-game","bind-cost","merkle","lean-proofs"],"layer":"receipt","dependencies":["ClosedTrace.lean","BindAxioms.lean","SidonSets.lean","EquationFractalEncoding.lean","BinnedFormalizations.lean","T1_Coherence.lean","InformationManifold.lean","chaos_game_16d.py"],"summary":"First closed end-to-end trace for E=mc² through 6 components; 9 theorems proven, 3 stated with sorry; demonstrates all optimized components wire together from equation text to cryptographic receipt."}
{"file":"lean_binned/receipts/SIDON_OPT_RECEIPT.md","title":"Sidon-Chaos Optimization Receipt","concepts":[{"name":"Sidon Chaos Addresses","description":"8-element Sidon set {1,2,4,8,16,32,64,128} for strand labeling; proven Sidon by native_decide.","type":"theorem"},{"name":"chaos_trajectory_no_collision","description":"MAIN THEOREM: Two trajectories with same total address and length≤2 have same unordered strand pairs; proven via Sidon property of powers of 2.","type":"theorem"},{"name":"sidon_guided_basin_unique","description":"Basin assignment is unique for short trajectories; same address implies same trajectory (up to permutation).","type":"theorem"},{"name":"sidon_8strand_full_capacity","description":"All 36 unordered pairwise sums are distinct, achieving theoretical Sidon maximum; proven by native_decide.","type":"theorem"},{"name":"E8-to-8-Strand Bridge","description":"240 E8 roots → 120 positive roots → 8 simple roots; each αᵢ maps to strand i with Sidon address 2ⁱ; Coxeter number h=30 connects to Singer modulus 31=5²+5+1.","type":"architecture"},{"name":"Deterministic Sidon-Guided Chaos Game","description":"LCG seeding from equation hash, strand selection via sidon_address(hash%8), convergence detection by energy ratio variance <0.01.","type":"algorithm"},{"name":"e8_sidon_embed","description":"Core function: hash → (Sidon addr, E8 coeff) triple-step embedding; proven valid, deterministic, and injective on addresses.","type":"algorithm"}],"tags":["sidon-sets","chaos-game","e8-lattice","collision-free","deterministic-convergence","lean-proofs"],"layer":"receipt","dependencies":["SidonSets.lean","E8Sidon.lean","chaos_game_16d.py"],"summary":"Optimizes Sidon-chaos pipeline with 10 proven theorems including chaos_trajectory_no_collision, E8-to-8-strand bridge (Coxeter number connects to Singer modulus), and deterministic convergence; 3 conjectural/WIP theorems remain."}
{"file":"lean_binned/receipts/SPECTRAL_OPT_RECEIPT.md","title":"Spectral Optimization Receipt","concepts":[{"name":"EquationShape Parser","description":"Replaced meaningless omega proofs with prove_shape function computing actual parse; rfl proves parsing equals claimed structure at compile time.","type":"recipe"},{"name":"5D Manifold Coordinates","description":"Replaced hash-based golden-ratio noise with actual equation properties: complexity=operator density, abstraction=quantifier depth, verification=proof status, cross_domain=cross-refs, utility=search frequency.","type":"recipe"},{"name":"Proper Merkle Tree","description":"Replaced commutative addition-based subtree fold with mixHash using 33-bit rotation, 17-bit rotation, and odd constant multiplication; non-commutative and non-associative.","type":"algorithm"},{"name":"Spectral-to-Sidon Bridge","description":"spectral_to_sidon_address maps 8D spectral profile to Sidon address via magnitude thresholds; B2 Sidon property guarantees unique addressing.","type":"algorithm"},{"name":"Sidon Address Validity","description":"sidon_address_valid theorem proven; all pairwise sums distinct; chaos game IFS contraction ensures convergence to unique fixed point.","type":"theorem"}],"tags":["spectral-binning","equation-shape","merkle-tree","sidon-addressing","chaos-game","lean-proofs"],"layer":"receipt","dependencies":["BinnedFormalizations.lean","EquationFractalEncoding.lean","eigensolid_pipeline.py"],"summary":"Rewrites 3 core files fixing 4 critical issues: meaningless binned formalizations replaced with real EquationShape parser, hash-based manifold replaced with equation properties, broken Merkle tree replaced with proper non-commutative mixHash, and spectral-to-Sidon bridge added."}
{"file":"6-Documentation/INFRASTRUCTURE.md","title":"Research Stack Infrastructure","concepts":[{"name":"Tailscale Mesh Network","description":"5-node mesh: nixos (control plane), qfox-1 (GPU RTX 4070), 361395-1 (edge/funnel), racknerd (edge worker), steamdeck (worker).","type":"architecture"},{"name":"k3s Cluster","description":"v1.35.4+k3s1 with Flannel CNI, Traefik ingress; namespaces: services, media, mail, monitoring, edge, ai-models, research.","type":"architecture"},{"name":"Tang Nano 9K FPGA","description":"Gowin GW1NR-LV9 with Blitter6502OISC SUBLEQ CPU, Q16 LUT Core, Voltage Controller, Scale Space BRAM, HiGHS Pivot; 195.92 MHz achieved.","type":"architecture"},{"name":"Video-as-Compute","description":"GPU detection and optimization routing for NVIDIA/AMD/CPU via vcn_compute_substrate.py; lossless YUV range correction; heterogeneous frame slicing.","type":"architecture"},{"name":"Q16 LUT Core","description":"Hardware fixed-point arithmetic unit: 8 ops (add, sub, mul, div, sqrt, abs, min, max), 2-stage pipeline, 74ns latency.","type":"primitive"},{"name":"Blitter6502OISC","description":"SUBLEQ CPU with 4K memory, UART; 2000 LUTs, ~500 FFs.","type":"architecture"},{"name":"Lean 4 / Semantics","description":"Lean 4.30.0-rc2 + Mathlib; 3572 jobs, 0 errors; 10,353 .lean files; key modules: FixedPoint, AdjugateMatrix, GoldenRatioSeparation, etc.","type":"spec"},{"name":"Caddy with Porkbun DNS-01","description":"Wildcard TLS certificates via Porkbun DNS-01 challenge; domain researchstack.info.","type":"protocol"},{"name":"Authentik OIDC","description":"SSO authentication for web-facing endpoints; auth.researchstack.info.","type":"protocol"}],"tags":["infrastructure","tailscale","k3s","fpga","tang-nano-9k","gpu","lean-4","caddy","authentik"],"layer":"infrastructure","dependencies":[],"summary":"Comprehensive infrastructure documentation covering Tailscale mesh (5 nodes), k3s cluster (7 namespaces), Tang Nano 9K FPGA (SUBLEQ CPU + Q16 LUT), GPU video-as-compute, Lean 4 Semantics (3572 jobs), and Caddy/Authentik TLS/SSO."}
{"file":"6-Documentation/DISASTER_RECOVERY.md","title":"Disaster Recovery — Research Stack","concepts":[{"name":"etcd Backup","description":"k3s etcd-snapshot save with automated cron job (3 AM daily, 7-day retention); restore via --cluster-reset-restore-path.","type":"recipe"},{"name":"FPGA Bitstream Recovery","description":"Source and compiled bitstream in git repo; re-flash via openFPGALoader -b tangnano9k; SRAM contents volatile (UART dump before power-off).","type":"recipe"},{"name":"Tailscale Re-authentication","description":"Restart tailscaled, use auth key from password manager or backup; state stored at /var/lib/tailscale/.","type":"recipe"},{"name":"Git Repository Backup","description":"Canonical backup is remote origin; push all changes + tags; add backup remote for redundancy.","type":"recipe"},{"name":"sops-nix / age Key Backup","description":"Backup age keys from /etc/age/keys.txt; re-encrypt secrets with new key as last resort.","type":"recipe"},{"name":"DNS/Porkbun Recovery","description":"Regenerate Porkbun API key, update k8s secret, restart Caddy for renewal.","type":"recipe"},{"name":"Recovery Priority Order","description":"Tailscale → Git → age keys → k3s cluster → DNS/Porkbun → FPGA → Services.","type":"recipe"}],"tags":["disaster-recovery","backup","restore","k3s","fpga","tailscale","sops","age","dns"],"layer":"infrastructure","dependencies":["INFRASTRUCTURE.md"],"summary":"Disaster recovery procedures for all Research Stack components: etcd backup/restore, FPGA re-flash, Tailscale re-auth, git remote backup, sops-nix age keys, DNS/Porkbun API key recovery; recovery priority order documented."}
{"file":"6-Documentation/RUNBOOK.md","title":"Ops Runbook — Research Stack","concepts":[{"name":"k3s Health Check","description":"kubectl get nodes/pods, journalctl -u k3s, rollout restart for pod restarts, force delete for stuck pods.","type":"recipe"},{"name":"FPGA Debug","description":"LED state interpretation (all off=halted, blinking=running, LED0 solid=trap), UART debug via picocom at 115384 baud, re-flash procedure.","type":"recipe"},{"name":"Tailscale Debug","description":"tailscale status/ping, funnel restart on 361395-1, relay detection, direct-peers-only mode.","type":"recipe"},{"name":"GPU/Ollama Ops","description":"nvidia-smi monitoring, Ollama restart (k3s pod or systemd), model pull/manage, NodePort access at 31434.","type":"recipe"},{"name":"DNS/TLS Ops","description":"LE cert check (valid until 2026-08-18), Caddy renewal trigger, Porkbun DNS verification.","type":"recipe"},{"name":"Escalation Matrix","description":"Pod down→rollout restart, Node down→SSH+systemctl, FPGA→re-flash, Tailscale→auth key, DNS→Caddy, GPU→nvidia-smi.","type":"recipe"}],"tags":["runbook","ops","k3s","fpga","tailscale","gpu","dns","tls","troubleshooting"],"layer":"infrastructure","dependencies":["INFRASTRUCTURE.md"],"summary":"Quick-reference operational procedures for k3s cluster, FPGA Tang Nano 9K, Tailscale mesh, GPU/Ollama, and DNS/TLS with escalation matrix for common failures."}
{"file":"6-Documentation/FPGA_PROGRAMMING_GUIDE.md","title":"FPGA Programming Guide — SUBLEQ on the Blitter","concepts":[{"name":"SUBLEQ Instruction","description":"3-word instruction: [src][dst][next]; mem[dst]-=mem[src], if≤0 PC=next else PC+3; next==0 is HALT.","type":"primitive"},{"name":"Memory Map","description":"$0000-$0FFF program+data, $8000-$800F Q16 LUT registers, $8010 voltage controller, $8011 scale space, $8020-$8025 HiGHS pivot, $FF00-$FF03 UART, $FFF0 LED, $FFF1 button.","type":"spec"},{"name":"Q16 LUT Operations","description":"8 opcodes: add, sub, mul, div, sqrt, abs, min, max; 2-cycle latency (74ns @ 27MHz); operands written to $8000-$8003, result read from $8008-$8009.","type":"primitive"},{"name":"Q16.16 Encoding","description":"value = integer_part × 65536 + fraction_part; 1.0=65536, 0.5=32768, 3.14=205887, -1.0=-65536.","type":"definition"},{"name":"Voltage Controller Modes","description":"4 BRAM modes: STORE (direct R/W), COMPUTE (Q16 LUT), APPROX (fast), MORPHIC (morphic field).","type":"definition"},{"name":"UART Loading","description":"Programs loaded via UART at 115384 baud; each word as 2 bytes big-endian; also via openFPGALoader SRAM/flash.","type":"recipe"},{"name":"SUBLEQ Example Programs","description":"Blink LED (toggle loop), Q16 Addition (hardware LUT), UART Send Character (poll + write).","type":"recipe"}],"tags":["fpga","subleq","blitter","q16-lut","uart","memory-map","tang-nano-9k","gowin"],"layer":"infrastructure","dependencies":["research_stack_top.v","q16_lut_core.v","Blitter6502OISC_small.v"],"summary":"FPGA programming guide for SUBLEQ CPU on Tang Nano 9K: instruction format, memory map ($0000-$FFFF), Q16 LUT operations (8 opcodes, 74ns), voltage controller modes, UART loading, and 3 example programs."}
{"file":"6-Documentation/API_DOCS.md","title":"API Documentation — Research Stack Services","concepts":[{"name":"Authentik OIDC","description":"Web-facing endpoints use Authentik OIDC SSO at auth.researchstack.info; scopes: openid, profile, email, groups.","type":"protocol"},{"name":"Bearer Token Auth","description":"API endpoints (/api/*) use Bearer token authentication managed by Credential Server.","type":"protocol"},{"name":"Cluster Dashboard API","description":"FastAPI+Vite at /server/dash/; endpoints: /api/status (cluster health), /api/metrics (Prometheus), /ws/live (WebSocket events).","type":"spec"},{"name":"Credential Server API","description":"Endpoints: /health, /tokens (list), /issue (create), /validate; Bearer token auth.","type":"spec"},{"name":"Registry API","description":"Artifact registry with CRUD; filters by type (bitstream, lean-build, receipt), since timestamp, limit.","type":"spec"},{"name":"Jobs API","description":"Job queue with create/list/cancel/logs; types include lean-build; SSE for log streaming.","type":"spec"},{"name":"Blobs API","description":"Binary blob storage with upload (multipart+SHA-256 verification), download, existence check, delete, list.","type":"spec"},{"name":"Rate Limits","description":"100 req/min for cred, 200 for registry, 50 for jobs, 100 for blobs; X-RateLimit headers.","type":"spec"}],"tags":["api","oidc","authentik","credential-server","registry","jobs","blobs","rate-limits"],"layer":"infrastructure","dependencies":["INFRASTRUCTURE.md"],"summary":"API documentation for 5 services: Cluster Dashboard (FastAPI+Vite), Credential Server, Registry API, Jobs API, and Blobs API; all use Authentik OIDC or Bearer token auth; rate limits documented."}
