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docs: bind ported concepts to CFF references

Browse source 
- Port Research Stack references with clear conceptual bindings into
  SilverSight CITATION.cff:
  - Saucedo 2019 → SidonSets / number-theory fixtures
  - Farr & Groot 2009, Fasolo & Sollich 2004, Baranau & Tallarek 2014,
    Kofke & Bolhuis 1999 → braid eigensolid / meta-solid phase models
  - Arrizabalaga et al. 2026 → Q16_16 fixed-point / no-Float compute
  - Yang et al. 2026 → recurrent search/classification loops
- Add a Conceptual bindings table to the porting candidates report
- Validate CFF YAML syntax

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96
CITATION.cff
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@ -98,3 +98,99 @@ references:
title: "Single quadrature noise tomography" title: "Single quadrature noise tomography"
year: 2025 year: 2025
notes: "Full citation details pending DOI or arXiv ID." notes: "Full citation details pending DOI or arXiv ID."
# ── Conceptual bindings ported from Research Stack ─────────────────────────
- type: thesis
title: "Pascal's Triangle, Pascal's Pyramid, and the Trinomial Triangle"
authors:
- family-names: "Saucedo"
given-names: "Antonio Jr."
date-published: 2019-06
institution:
name: "California State University, San Bernardino"
collection-title: "Electronic Theses, Projects, and Dissertations"
url: "https://scholarworks.lib.csusb.edu/etd/855"
notes: "Combinatorics reference for Pascal-triangle extensions and Fermat-number patterns; binds to SilverSight Sidon-set and number-theory modules (e.g., SidonSets, SpherionTwinPrime)."
- type: article
title: "Close packing density of polydisperse hard spheres"
authors:
- family-names: "Farr"
given-names: "R."
- family-names: "Groot"
given-names: "R. D."
date-published: 2009-12
doi: 10.1063/1.3276799
journal: "The Journal of Chemical Physics"
notes: "Anchor paper for polydisperse close-packing theory; binds to braid-eigensolid and meta-solid phase models (BraidEigensolid, BraidSpherionBridge, BaselineComparison)."
- type: article
title: "Fractionation effects in phase equilibria of polydisperse hard-sphere colloids"
authors:
- family-names: "Fasolo"
given-names: "M."
- family-names: "Sollich"
given-names: "P."
date-published: 2004-10
doi: 10.1103/physreve.70.041410
journal: "Physical Review E"
notes: "Full fractionation phase equilibria for polydisperse hard spheres; terminal polydispersity ~14% binds to the meta-solid 1/7 mixing threshold."
- type: article
title: "Random-close packing limits for monodisperse and polydisperse hard spheres"
authors:
- family-names: "Baranau"
given-names: "V."
- family-names: "Tallarek"
given-names: "U."
date-published: 2014
doi: 10.1039/c3sm52959b
journal: "Soft Matter"
notes: "Definitive RCP limits for monodisperse (~0.64) and polydisperse spheres; conceptual reference for eigensolid packing bounds."
- type: article
title: "Freezing of polydisperse hard spheres"
authors:
- family-names: "Kofke"
given-names: "D."
- family-names: "Bolhuis"
given-names: "P."
date-published: 1999
doi: 10.1103/physreve.59.618
journal: "Physical Review E"
notes: "Fractionating phase behavior of polydisperse hard spheres; supports braid/meta-solid phase-transition fixtures."
- type: article
title: "A Differentiable Interior-Point Method in Single Precision"
authors:
- family-names: "Arrizabalaga"
given-names: "Jon"
- family-names: "Tracy"
given-names: "Kevin"
- family-names: "Manchester"
given-names: "Zachary"
date-published: 2026-05
url: "https://arxiv.org/abs/2605.17913"
notes: "Differentiable primal-dual IPM with bounded KKT systems for low-precision / fixed-point arithmetic; binds to SilverSight Q16_16 fixed-point computation (FixedPoint, Q16InverseProof)."
- type: article
title: "Stabilizing Recurrent Dynamics for Test-Time Scalable Latent Reasoning in Looped Language Models"
authors:
- family-names: "Yang"
given-names: "Xiao-Wen"
- family-names: "Han"
given-names: "Ziyu"
- family-names: "Zhang"
given-names: "Xi-Hua"
- family-names: "Wei"
given-names: "Wen-Da"
- family-names: "Shao"
given-names: "Jie-Jing"
- family-names: "Guo"
given-names: "Lan-Zhe"
- family-names: "Li"
given-names: "Yu-Feng"
date-published: 2026-05
url: "https://arxiv.org/abs/2605.26733"
notes: "STARS regularizes spectral radius of the Jacobian using power iterations with JVPs; conceptual reference for recurrent / looped dynamics in search and classification loops."

15
docs/generate_porting_candidates.py
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@ -92,6 +92,21 @@ for db_edge in sorted(script_edges, key=lambda x: ents.get(x["src"], {}).get("na
md.append(f"- `{src.get('name','?')}` → `{dst.get('name','?')}`") md.append(f"- `{src.get('name','?')}` → `{dst.get('name','?')}`")
md.append("") md.append("")
md.append("## Conceptual bindings to CFF references")
md.append("")
md.append("When porting a module, check `CITATION.cff` for the source reference that")
md.append("supports its mathematical or physical claim.")
md.append("")
md.append("| SilverSight concept / module | Research Stack source / CFF reference |")
md.append("|------------------------------|---------------------------------------|")
md.append("| `SidonSets`, `SpherionTwinPrime`, number-theory fixtures | Saucedo 2019 — Pascal's Triangle/Pyramid/Trinomial |")
md.append("| `BraidEigensolid`, `BraidSpherionBridge`, `BaselineComparison` | Farr & Groot 2009 — polydisperse hard-sphere packing |")
md.append("| Meta-solid 1/7 mixing threshold | Fasolo & Sollich 2004 — terminal polydispersity ~14% |")
md.append("| Eigensolid packing bounds | Baranau & Tallarek 2014 — RCP limits |")
md.append("| `FixedPoint`, `Q16InverseProof`, no-Float compute | Arrizabalaga et al. 2026 — single-precision differentiable IPM |")
md.append("| Recurrent search/classification loops | Yang et al. 2026 — STARS recurrent scaling |")
md.append("")
(ROOT / "research_stack_porting_candidates.md").write_text("\n".join(md), encoding="utf-8") (ROOT / "research_stack_porting_candidates.md").write_text("\n".join(md), encoding="utf-8")
print(f"Wrote {ROOT / 'research_stack_porting_candidates.md'}") print(f"Wrote {ROOT / 'research_stack_porting_candidates.md'}")
print(f"Total candidates: {len(candidates)}") print(f"Total candidates: {len(candidates)}")

150
docs/research_stack_porting_candidates.md
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@ -61,6 +61,74 @@ SilverSight-relevant math kinds with ≤5 sorries.
## Candidates by math kind ## Candidates by math kind
### avm
- `FoldedPointManifold` — th=21 def=28 sorry=0 in=0
- `RustOISCDecompressor` — th=14 def=36 sorry=0 in=0
- `ParameterSensitivity` — th=16 def=27 sorry=0 in=0
- `CandidateDictionary` — th=14 def=20 sorry=0 in=0
- `FractionScan` — th=17 def=14 sorry=0 in=0
- `Omindirection` — th=12 def=21 sorry=0 in=1
- `GCCL` — th=12 def=18 sorry=0 in=1
- `ExperimentTracker` — th=11 def=11 sorry=0 in=0
- `ContinuedFractionCompression` — th=10 def=12 sorry=0 in=0
- `MinimalBitcoinL3` — th=13 def=6 sorry=0 in=0
- `BernoulliOccupancyShockbow` — th=6 def=18 sorry=0 in=0
- `LogogramSubstitution` — th=8 def=14 sorry=0 in=0
- `LadderLUT` — th=8 def=13 sorry=0 in=0
- `AntiBraidStorm` — th=9 def=7 sorry=0 in=0
- `Surface` — th=10 def=4 sorry=0 in=0
### algebra
- `i` — th=107 def=7 sorry=0 in=0
- `green_57` — th=69 def=34 sorry=0 in=0
- `DeltaGCLCompression` — th=62 def=37 sorry=0 in=0
- `bipartite_reconstruction` — th=52 def=14 sorry=0 in=0
- `Tests` — th=39 def=20 sorry=0 in=0
- `MassNumberPreSlots` — th=0 def=82 sorry=0 in=0
- `UnifiedConvictionFlow` — th=17 def=38 sorry=0 in=0
- `PreRegisteredPredictions` — th=21 def=26 sorry=0 in=0
- `SDPVerify` — th=23 def=30 sorry=1 in=0
- `ExtremeParameterTest` — th=0 def=39 sorry=0 in=9
- `graph_conjecture2` — th=30 def=2 sorry=0 in=0
- `HutterPrizeFlow` — th=14 def=30 sorry=0 in=0
- `Bind` — th=6 def=21 sorry=3 in=18
- `Classify` — th=12 def=32 sorry=0 in=0
- `EpistemicHonesty` — th=16 def=20 sorry=0 in=0
### fixedpoint
- `FixedPoint` — th=62 def=99 sorry=0 in=97
- `EntropyMeasures` — th=4 def=456 sorry=0 in=0
- `PistSimulation` — th=16 def=111 sorry=0 in=0
- `Law15_Field` — th=27 def=58 sorry=0 in=0
- `NBody` — th=13 def=83 sorry=0 in=0
- `HachimojiPipeline` — th=0 def=105 sorry=0 in=0
- `SSMS` — th=14 def=67 sorry=0 in=3
- `Q16InverseProof` — th=44 def=10 sorry=0 in=0
- `F01_Q16_16_FixedPoint` — th=27 def=19 sorry=0 in=0
- `UniversalBridge` — th=26 def=20 sorry=0 in=0
- `EntropyPhaseEngine` — th=10 def=51 sorry=0 in=0
- `PhysicsScalarBridge` — th=0 def=41 sorry=0 in=10
- `BurgersPDE` — th=20 def=29 sorry=0 in=0
- `AdjugateMatrix` — th=20 def=27 sorry=0 in=0
- `TransportTheory` — th=26 def=14 sorry=0 in=0
### number_theory
- `SidonSets` — th=68 def=17 sorry=0 in=0
- `i` — th=68 def=1 sorry=0 in=0
- `tenenbaum` — th=54 def=8 sorry=0 in=0
- `SpherionTwinPrime` — th=41 def=28 sorry=0 in=0
- `erdos_846` — th=47 def=5 sorry=0 in=0
- `erdos_152` — th=45 def=7 sorry=0 in=0
- `E8Sidon` — th=60 def=23 sorry=5 in=0
- `ii` — th=26 def=9 sorry=0 in=0
- `ii` — th=28 def=3 sorry=0 in=0
- `ImaginarySemanticTime` — th=19 def=16 sorry=0 in=0
- `SidonAVM` — th=3 def=24 sorry=0 in=0
- `GoormaghtighEnumeration` — th=13 def=1 sorry=0 in=0
- `PrimeGearCache` — th=7 def=13 sorry=0 in=0
- `AntiDiophantine` — th=10 def=6 sorry=0 in=0
- `GoldenRatioSeparation` — th=8 def=8 sorry=0 in=0
### braid ### braid
- `BaselineComparison` — th=15 def=24 sorry=0 in=0 - `BaselineComparison` — th=15 def=24 sorry=0 in=0
- `BraidEigensolid` — th=16 def=19 sorry=0 in=1 - `BraidEigensolid` — th=16 def=19 sorry=0 in=1
@ -112,74 +180,6 @@ SilverSight-relevant math kinds with ≤5 sorries.
- `NS_MD` — th=0 def=16 sorry=0 in=0 - `NS_MD` — th=0 def=16 sorry=0 in=0
- `CollectiveManifoldInterface` — th=3 def=9 sorry=0 in=0 - `CollectiveManifoldInterface` — th=3 def=9 sorry=0 in=0
### algebra
- `i` — th=107 def=7 sorry=0 in=0
- `green_57` — th=69 def=34 sorry=0 in=0
- `DeltaGCLCompression` — th=62 def=37 sorry=0 in=0
- `bipartite_reconstruction` — th=52 def=14 sorry=0 in=0
- `Tests` — th=39 def=20 sorry=0 in=0
- `MassNumberPreSlots` — th=0 def=82 sorry=0 in=0
- `UnifiedConvictionFlow` — th=17 def=38 sorry=0 in=0
- `PreRegisteredPredictions` — th=21 def=26 sorry=0 in=0
- `SDPVerify` — th=23 def=30 sorry=1 in=0
- `ExtremeParameterTest` — th=0 def=39 sorry=0 in=9
- `graph_conjecture2` — th=30 def=2 sorry=0 in=0
- `HutterPrizeFlow` — th=14 def=30 sorry=0 in=0
- `Bind` — th=6 def=21 sorry=3 in=18
- `Classify` — th=12 def=32 sorry=0 in=0
- `EpistemicHonesty` — th=16 def=20 sorry=0 in=0
### avm
- `FoldedPointManifold` — th=21 def=28 sorry=0 in=0
- `RustOISCDecompressor` — th=14 def=36 sorry=0 in=0
- `ParameterSensitivity` — th=16 def=27 sorry=0 in=0
- `CandidateDictionary` — th=14 def=20 sorry=0 in=0
- `FractionScan` — th=17 def=14 sorry=0 in=0
- `Omindirection` — th=12 def=21 sorry=0 in=1
- `GCCL` — th=12 def=18 sorry=0 in=1
- `ExperimentTracker` — th=11 def=11 sorry=0 in=0
- `ContinuedFractionCompression` — th=10 def=12 sorry=0 in=0
- `MinimalBitcoinL3` — th=13 def=6 sorry=0 in=0
- `BernoulliOccupancyShockbow` — th=6 def=18 sorry=0 in=0
- `LogogramSubstitution` — th=8 def=14 sorry=0 in=0
- `LadderLUT` — th=8 def=13 sorry=0 in=0
- `AntiBraidStorm` — th=9 def=7 sorry=0 in=0
- `Surface` — th=10 def=4 sorry=0 in=0
### number_theory
- `SidonSets` — th=68 def=17 sorry=0 in=0
- `i` — th=68 def=1 sorry=0 in=0
- `tenenbaum` — th=54 def=8 sorry=0 in=0
- `SpherionTwinPrime` — th=41 def=28 sorry=0 in=0
- `erdos_846` — th=47 def=5 sorry=0 in=0
- `erdos_152` — th=45 def=7 sorry=0 in=0
- `E8Sidon` — th=60 def=23 sorry=5 in=0
- `ii` — th=26 def=9 sorry=0 in=0
- `ii` — th=28 def=3 sorry=0 in=0
- `ImaginarySemanticTime` — th=19 def=16 sorry=0 in=0
- `SidonAVM` — th=3 def=24 sorry=0 in=0
- `GoormaghtighEnumeration` — th=13 def=1 sorry=0 in=0
- `PrimeGearCache` — th=7 def=13 sorry=0 in=0
- `AntiDiophantine` — th=10 def=6 sorry=0 in=0
- `GoldenRatioSeparation` — th=8 def=8 sorry=0 in=0
### fixedpoint
- `FixedPoint` — th=62 def=99 sorry=0 in=97
- `EntropyMeasures` — th=4 def=456 sorry=0 in=0
- `PistSimulation` — th=16 def=111 sorry=0 in=0
- `Law15_Field` — th=27 def=58 sorry=0 in=0
- `NBody` — th=13 def=83 sorry=0 in=0
- `HachimojiPipeline` — th=0 def=105 sorry=0 in=0
- `SSMS` — th=14 def=67 sorry=0 in=3
- `Q16InverseProof` — th=44 def=10 sorry=0 in=0
- `F01_Q16_16_FixedPoint` — th=27 def=19 sorry=0 in=0
- `UniversalBridge` — th=26 def=20 sorry=0 in=0
- `EntropyPhaseEngine` — th=10 def=51 sorry=0 in=0
- `PhysicsScalarBridge` — th=0 def=41 sorry=0 in=10
- `BurgersPDE` — th=20 def=29 sorry=0 in=0
- `AdjugateMatrix` — th=20 def=27 sorry=0 in=0
- `TransportTheory` — th=26 def=14 sorry=0 in=0
## Zero-sorry foundation modules ## Zero-sorry foundation modules
Modules with 0 sorries that are imported by at least 3 other modules: Modules with 0 sorries that are imported by at least 3 other modules:
@ -218,3 +218,17 @@ Modules with 0 sorries that are imported by at least 3 other modules:
- `burgers_0d_braid_exact.py` → `ene` - `burgers_0d_braid_exact.py` → `ene`
- `burgers_2d_simplification.py` → `ene` - `burgers_2d_simplification.py` → `ene`
- `burgers_cfl_sweep.py` → `ene` - `burgers_cfl_sweep.py` → `ene`
## Conceptual bindings to CFF references
When porting a module, check `CITATION.cff` for the source reference that
supports its mathematical or physical claim.
| SilverSight concept / module | Research Stack source / CFF reference |
|------------------------------|---------------------------------------|
| `SidonSets`, `SpherionTwinPrime`, number-theory fixtures | Saucedo 2019 — Pascal's Triangle/Pyramid/Trinomial |
| `BraidEigensolid`, `BraidSpherionBridge`, `BaselineComparison` | Farr & Groot 2009 — polydisperse hard-sphere packing |
| Meta-solid 1/7 mixing threshold | Fasolo & Sollich 2004 — terminal polydispersity ~14% |
| Eigensolid packing bounds | Baranau & Tallarek 2014 — RCP limits |
| `FixedPoint`, `Q16InverseProof`, no-Float compute | Arrizabalaga et al. 2026 — single-precision differentiable IPM |
| Recurrent search/classification loops | Yang et al. 2026 — STARS recurrent scaling |