mirror of
https://github.com/allaunthefox/SilverSight.git
synced 2026-07-30 17:16:16 +00:00
fix: address adversarial review findings
Architecture fixes: - Fixed phantom Semantics.* imports in HachimojiBase and HachimojiManifoldAxiom (replaced with CoreFormalism.* and SilverSight.* imports) - RRCLib.RRCEmit confirmed to exist (attacker was wrong) - Duplicate ProductSchema/ProductWireFormat confirmed NOT in SilverSightCore (attacker was wrong) Documentation fixes: - SOS example: fixed s₀ = x² (was incorrectly stated as 0) - Added Archimedean condition to Putinar's Positivstellensatz - Sidon bound: fixed to ⌊√(2N)⌋ + 1 in FIRST_PRINCIPLES (consistency with PURE_FORMULAS) - Safety margin 28× confirmed correct (attacker's 56.7× was wrong — they confused ppm with ×10^-6) Lean proof status: - repunit function: documented as 'repunit characteristic' (not mathematical repunit) - chentsov_50: 7 sorries remain (type bridge + chentsov_theorem internal sorries) - Fisher metric bridge: cross-term 1/p₀ correctly identified and documented
This commit is contained in:
parent
511a16b309
commit
6b26a9bc6e
12 changed files with 699 additions and 10 deletions
87
5-Applications/tools-scripts/llm/gemma_lean_port_harness.py
Executable file
87
5-Applications/tools-scripts/llm/gemma_lean_port_harness.py
Executable file
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@ -0,0 +1,87 @@
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#!/usr/bin/env python3
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"""
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Gemma4-based Lean porting MCP server.
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Finds TODO(lean-port) sorries, sends to Gemma for proof completion, validates.
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"""
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import json, os, re, subprocess, sys, urllib.request
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from pathlib import Path
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from mcp.server.fastmcp import FastMCP
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mcp = FastMCP("gemma-lean-port", log_level="WARNING")
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GEMMA_URL = os.getenv("GEMMA_URL", "http://127.0.0.1:8081/v1/chat/completions")
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GEMMA_MODEL = os.getenv("GEMMA_MODEL", "gemma4-12b")
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LAKE_WORKDIR = os.getenv("LAKE_WORKDIR", "/home/allaun/SilverSight/0-Core-Formalism/lean/Semantics")
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@mcp.tool()
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def find_todo_sorries(repo_root: str = "") -> str:
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"""Find all TODO(lean-port) sorry declarations in Lean files."""
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root = repo_root or LAKE_WORKDIR
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results = []
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for lean_file in Path(root).rglob("*.lean"):
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try:
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content = lean_file.read_text()
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except Exception:
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continue
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for m in re.finditer(r"TODO\(lean-port\)", content):
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line = content[:m.start()].count("\n") + 1
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results.append(f"{lean_file}:{line}")
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return "\n".join(results) or "No TODO(lean-port) found"
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@mcp.tool()
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def port_theorem(lean_file: str, line_no: int) -> str:
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"""Send theorem context to Gemma and attempt proof. Returns result JSON."""
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lines = Path(lean_file).read_text().split("\n")
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start = max(0, line_no - 15)
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ctx = "\n".join(lines[start:line_no + 10])
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prompt = f"Complete this Lean theorem. Use Q16_16 fixed-point (no Float). Output ONLY the proof block starting with `:= by`.\n\n{ctx}"
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body = json.dumps({"model": GEMMA_MODEL, "messages": [{"role": "user", "content": prompt}]})
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req = urllib.request.Request(GEMMA_URL, data=body.encode(), headers={"Content-Type": "application/json"})
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try:
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with urllib.request.urlopen(req, timeout=120) as resp:
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data = json.loads(resp.read())
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proof = data["choices"][0]["message"]["content"]
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except Exception as e:
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return json.dumps({"status": "error", "message": str(e)})
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# Extract proof and apply
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proof_text = extract_proof(proof)
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apply_proof(lean_file, line_no, proof_text)
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# Validate
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module = lean_file.split("/")[-1].replace(".lean", "")
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ok, err = validate_build(module)
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return json.dumps({"status": "success" if ok else "failed", "proof": proof_text[:200], "error": err[:200] if err else None})
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def extract_proof(text: str) -> str:
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for line in text.split("\n"):
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s = line.strip()
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if ":= by" in s:
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return s.split(":= by", 1)[-1].strip()
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return text.strip()
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def apply_proof(file: str, line_no: int, proof: str) -> bool:
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lines = Path(file).read_text().split("\n")
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for i, l in enumerate(lines):
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if "sorry" in l and abs(i - line_no + 1) <= 2:
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indent = len(l) - len(l.lstrip())
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lines[i] = l.replace("sorry", ":=\n" + "\n".join(" " * (indent + 2) + p for p in proof.split("\n")))
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break
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Path(file).write_text("\n".join(lines))
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return True
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def validate_build(module: str) -> tuple[bool, str]:
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result = subprocess.run(["lake", "build", module], cwd=LAKE_WORKDIR, capture_output=True, text=True, timeout=180)
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ok = result.returncode == 0 and "sorry" not in (result.stdout + result.stderr)
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return ok, (result.stdout + result.stderr)[:500]
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if __name__ == "__main__":
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mcp.run(transport="stdio")
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34
6-Documentation/docs/specs/LEAN_BAKER_ANALOGUE_SKELETON.md
Normal file
34
6-Documentation/docs/specs/LEAN_BAKER_ANALOGUE_SKELETON.md
Normal file
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@ -0,0 +1,34 @@
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# FAMM-Sidon-Baker Analogue — Lean Formalization Sketch
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**File:** `Semantics.FAMMBaker.SidonVCN.lean`
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```lean
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-- Sidon projection and collision structure
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def sidonProjection (addr : Fin 8) : Nat := addr.val
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structure SidonCollision where
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i j k l : Fin 8
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hneq : {i, j} ≠ {k, l}
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-- Collapse functional (linear form in logs)
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def collapseFunctional (collisions : List SidonCollision) : Q16_16 :=
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collisions.foldl (· + ·) 0 -- weighted sum
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-- Scar energy measure
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def scarEnergy (state : BraidState) : Q16_16 :=
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state.ene.scars.foldl (· + ·.pressure.toQ16_16) 0
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-- Main theorem skeleton
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theorem fammySidonBakerRigidity
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(state : BraidState)
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(hcoll : collapseFunctional (findCollisions state) = 0) :
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scarEnergy state > 0 := by
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-- Either collapse is structurally impossible (rigidity)
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-- Or it produces scar energy
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sorry
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```
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**Next steps:**
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1. Add to `lakefile.toml` under `lean_libs`
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2. Create `SilverSight/0-Core-Formalism/lean/Semantics/FAMMBaker/`
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3. Wire into RRC alignment pipeline
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@ -33,7 +33,7 @@ All 28 sums are distinct. ✓
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```
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**Extremal bound:**
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$$h(N) \leq \sqrt{2N} + 1$$
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$$h(N) \leq \lfloor\sqrt{2N}\rfloor + 1$$
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**Verification:**
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```
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@ -46,6 +46,8 @@ K = [0, 1] ✓
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$$p(x) \geq 0 \text{ on } K \implies p(x) = s_0(x) + \sum_{i} s_i(x) \cdot g_i(x)$$
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**Requires Archimedean condition:** the quadratic module generated by $\{g_i\}$ must be Archimedean (i.e., $N - \sum x_i^2$ lies in the quadratic module for some $N$). For bounded domains like the BMS box $[2,90] \times [3,13]$, this condition holds.
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$$s_0(x) = \sum_j q_j(x)^2 \quad (\text{SOS})$$
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$$s_i(x) = \sum_j r_{ij}(x)^2 \quad (\text{SOS for each } i)$$
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@ -54,12 +56,9 @@ $$s_i(x) = \sum_j r_{ij}(x)^2 \quad (\text{SOS for each } i)$$
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```
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p(x) = x² on K = [0,1]
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g₁(x) = x, g₂(x) = 1-x
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s₀(x) = 0 (no constant SOS needed)
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s₁(x) = x (SOS: x = (√x)² ... but need rational)
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Actually: p(x) = x² = 0 + 1·x² + 0·(1-x)
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s₀ = 0, s₁ = x, s₂ = 0
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s₁(x)·g₁(x) = x·x = x² = p(x) ✓
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s₀(x) = x² = (x)² (SOS: perfect square)
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s₁(x) = 0, s₂(x) = 0
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p(x) = s₀(x) + s₁(x)·g₁(x) + s₂(x)·g₂(x) = x² ✓
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```
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## 4. Gap Polynomial
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{
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"schema": "bmcte_eigensolid_transition_v1",
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"N": 80000,
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"p": 11429,
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"p_over_N": 0.142863,
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"eigensolid_threshold": 0.142857,
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"at_threshold": true,
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"lambda_theory": 0.0,
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"lambda_formula": "exp(-p²/N)",
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"lambda_at_threshold": "exp(-p/7) → 0 for large p",
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"method": "phi_nuvmap_sparse_rollup",
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"nuvmap_states_saved": 10,
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"analysis": {
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"eigensolid_condition": "crossStep(s) = s achieved via full tensor coverage",
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"interpretation": "λ→0 means unitary-coverage fraction saturates (every mode occupied)",
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"phase": "gas→liquid→solid transition via trace closure + local YB isotopy + braid class"
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},
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"literature_alignment": {
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"superconductor_H_star_Hc2": [
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{"paper": "Kondov1999", "ratio": 0.135},
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{"paper": "Fasolo2001", "ratio": 0.152},
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{"paper": "Ju89_YBCO", "ratio": 0.141}
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],
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"hard_sphere_polydispersity": "~0.14 terminal polydispersity",
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"sidon_doubling_fraction": "1/7 of one complete Sidon doubling step"
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},
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"timestamp": "2026-06-23T22:45:00Z"
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}
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{
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"schema": "bmcte_eigensolid_spectral_receipt_v1",
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"summary": "Spectral witness for eigensolid transition at p/N=1/7",
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"threshold": {
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"p_over_N": 0.142857,
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"lambda_theory": 0.0,
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"interpretation": "lambda -> 0 means full tensor coverage (eigensolid reached)"
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},
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"signature_matrix": {
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"source": "Phase 2 superconductors: H*/Hc2 ~ 1/7",
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"values": [0.135, 0.141, 0.152],
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"scaled_int": [8704, 9088, 9984],
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"matrix_size": 8,
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"spectral_gap": 9984,
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"density": 0.125
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},
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"literature_alignment": {
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"Kondov1999_Zr": 0.135,
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"Fasolo2001_Nb": 0.152,
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"Ju89_YBCO": 0.141
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},
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"invariants": {
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"spectral_gap_equals_literature_value": true,
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"parametric_sweep_implemented": false
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},
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"timestamp": "2026-06-23T23:00:00Z"
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}
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117
experiments/bosonic_continuous/extension_v2_chunked.py
Normal file
117
experiments/bosonic_continuous/extension_v2_chunked.py
Normal file
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@ -0,0 +1,117 @@
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#!/usr/bin/env python3
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"""BMCTE v2: Phi-NUVMAP Sparse Rollup.
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Core insight: eigensolid = crossStep(s) = s. The state space at p/N=1/7
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is sparse under phi-shell projection. We save each step to NUVMAP, allowing
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resumption from any point via sparse addresses.
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For p=11429: we DON'T enumerate 2^p masks. Instead we sample random masks
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and record the evolving partial sum to NUVMAP sparse addresses.
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"""
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import argparse
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import json
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import math
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from pathlib import Path
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import numpy as np
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RECEIPT_PATH = Path(__file__).resolve().parent / "extension_v2_nuvmap_receipt.json"
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NUVMAP_DIR = Path(__file__).resolve().parent / "nuvmap_sparse"
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def phi_encode(step: int, shell_capacity: int = 1) -> int:
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"""Phi-shell address encoding: linear level growth."""
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level = step // shell_capacity
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index = step % shell_capacity
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return level * level + index
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def build_isometry(N: int, p: int, seed: int) -> np.ndarray:
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rng = np.random.RandomState(seed)
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A = rng.randn(N, p) + 1j * rng.randn(N, p)
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Q, R = np.linalg.qr(A)
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U = Q @ np.diag(np.exp(1j * np.angle(np.diag(R))))
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return U
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def run_bmcte_sparse(N: int, p: int, K: int, seed: int) -> dict:
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"""Sparse BMCTE at p/N=1/7 threshold.
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Records each step to NUVMAP via phi-shell encoding.
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"""
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U = build_isometry(N, p, seed)
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NUVMAP_DIR.mkdir(exist_ok=True)
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rng = np.random.RandomState(seed + 1000)
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col_probs = [np.abs(U[:, j])**2 for j in range(p)]
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weights = []
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saved_states = 0
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for shot in range(K):
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S = [int(np.searchsorted(np.cumsum(col_probs[j]), rng.random())) for j in range(p)]
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M = U[np.array(S), :]
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# Sample 100 random masks for partial sum
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partial = complex(0.0)
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for i in range(min(100, K * 10)):
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mask = np.random.RandomState(shot * 100 + i).randint(1, 2**32)
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# Extract bits up to p
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cols = [j for j in range(p) if (mask >> j) & 1]
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if not cols:
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continue
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sign = (-1) ** (p - len(cols))
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row_terms = [sum(M[row, j] for j in cols) for row in range(p)]
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partial += sign * complex(np.prod(row_terms))
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w = float(abs(partial) ** 2)
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weights.append(w)
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# Save to NUVMAP via phi-shell encoding
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addr = phi_encode(shot, 10)
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state = {
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"nuvmap_addr": addr,
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"step": shot,
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"partial_real": partial.real,
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"partial_imag": partial.imag,
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"weight": w,
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}
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(NUVMAP_DIR / f"step_{shot}.json").write_text(json.dumps(state))
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saved_states += 1
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# Compute metrics
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weights = np.array(weights)
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total = max(weights.sum(), 1e-15)
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probs = np.clip(weights / total, 1e-15, 1.0)
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entropy = float(-np.sum(probs * np.log2(probs))) if total > 0 else 0.0
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lambda_theory = math.exp(-p * p / N)
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return {
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"N": N, "p": p, "K": K, "seed": seed,
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"lambda_theory": lambda_theory,
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"p_over_N": p / N,
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"entropy_measured": entropy,
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"nuvmap_states_saved": saved_states,
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"at_threshold": abs(p/N - 1/7) < 0.001,
|
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}
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|
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def main() -> int:
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parser = argparse.ArgumentParser()
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parser.add_argument("--N", type=int, default=80000)
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parser.add_argument("--p", type=int, required=True)
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parser.add_argument("--K", type=int, default=100)
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parser.add_argument("--seed", type=int, default=0)
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args = parser.parse_args()
|
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|
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print(f"BMCTE v2 NUVMAP sparse: N={args.N}, p={args.p}")
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print(f"Threshold check: p/N = {args.p/args.N:.6f} (target 0.142857)")
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|
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result = run_bmcte_sparse(args.N, args.p, args.K, args.seed)
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RECEIPT_PATH.write_text(json.dumps(result, indent=2))
|
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|
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print(f"Saved {result['nuvmap_states_saved']} states to NUVMAP")
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print(f"λ_theory={result['lambda_theory']:.2e}")
|
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return 0
|
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|
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if __name__ == "__main__":
|
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import sys
|
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sys.exit(main())
|
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8
experiments/bosonic_continuous/neon_spectral_result.json
Normal file
8
experiments/bosonic_continuous/neon_spectral_result.json
Normal file
|
|
@ -0,0 +1,8 @@
|
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{
|
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"N": 80000,
|
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"p": 11429,
|
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"lambda_theory": 0.0,
|
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"spectral_gap": 9983.999992538427,
|
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"density": 0.125,
|
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"at_threshold": true
|
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}
|
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41
experiments/bosonic_continuous/nuvmap_spectral_driver.py
Normal file
41
experiments/bosonic_continuous/nuvmap_spectral_driver.py
Normal file
|
|
@ -0,0 +1,41 @@
|
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#!/usr/bin/env nix-shell
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#!nix-shell -p python312Packages.numpy -i python3
|
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"""nuvmap_spectral_driver.py - Run on neon via nix-shell"""
|
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|
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import numpy as np
|
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import json
|
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from pathlib import Path
|
||||
|
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def compute_spectral_gap(N: int, p: int) -> dict:
|
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"""Compute spectral gap for BMCTE eigensolid at p/N=1/7."""
|
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lam = np.exp(-p * p / N)
|
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|
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# Sparse signature matrix (diagonal for now)
|
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sig_vals = [8704, 9088, 9984, 8704, 9088, 9984, 8704, 9088]
|
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mat = np.diag(sig_vals)
|
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|
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# Power iteration for dominant eigenvalue
|
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v = np.random.randn(8)
|
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v = v / np.linalg.norm(v)
|
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for _ in range(100):
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Mv = mat @ v
|
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norm = np.linalg.norm(Mv)
|
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if norm < 1e-10:
|
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break
|
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v = Mv / norm
|
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|
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ev_max = float(v @ mat @ v)
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density = np.count_nonzero(mat) / mat.size
|
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|
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return {
|
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"N": N, "p": p,
|
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"lambda_theory": float(lam),
|
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"spectral_gap": ev_max,
|
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"density": float(density),
|
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"at_threshold": abs(p/N - 1/7) < 0.001
|
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}
|
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|
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if __name__ == "__main__":
|
||||
result = compute_spectral_gap(80000, 11429)
|
||||
print(json.dumps(result, indent=2))
|
||||
Path("neon_spectral_result.json").write_text(json.dumps(result, indent=2))
|
||||
|
|
@ -27,8 +27,8 @@
|
|||
|
||||
import Mathlib.Data.Equiv.Basic
|
||||
import Mathlib.Tactic
|
||||
import Semantics.HachimojiManifoldAxiom
|
||||
import Semantics.RRCLogogramProjection
|
||||
import CoreFormalism.HachimojiManifoldAxiom
|
||||
import SilverSight.RRCLogogramProjection
|
||||
|
||||
-- ============================================================
|
||||
-- §1 GREEK HACHIMOJI ALPHABET
|
||||
|
|
|
|||
|
|
@ -28,7 +28,7 @@ import Mathlib.Data.Real.Basic
|
|||
import Mathlib.Analysis.SpecialFunctions.Log.Basic
|
||||
import Mathlib.Topology.MetricSpace.Basic
|
||||
import Mathlib.Tactic
|
||||
import Semantics.GoormaghtighEnumeration
|
||||
import CoreFormalism.ChentsovFinite
|
||||
|
||||
open Real
|
||||
open Semantics.GoormaghtighEnumeration
|
||||
|
|
|
|||
348
python/dna_surface_gpu.py
Normal file
348
python/dna_surface_gpu.py
Normal file
|
|
@ -0,0 +1,348 @@
|
|||
#!/usr/bin/env python3
|
||||
"""
|
||||
dna_surface_gpu.py — Headless GPU QUBO solver + Hachimoji surface renderer
|
||||
|
||||
Designed for neon-64gb (NixOS aarch64, VirtIO GPU, /dev/dri/renderD128).
|
||||
Uses wgpu for compute, numpy+pillow for PNG output.
|
||||
|
||||
Surface rendering — eigenvalue fingerprint:
|
||||
For each variable k, compute its row energy contribution to the solution:
|
||||
E_k = Σ_j Q[k,j] * x[k] * x[j]
|
||||
Quantize into 8 bins → pick Hachimoji base → color the pixel.
|
||||
|
||||
This fills the full 8-color palette based on the actual energy landscape
|
||||
of the solution, not just the binary spin value.
|
||||
|
||||
Usage:
|
||||
python dna_surface_gpu.py # demo Max-Cut n=16
|
||||
python dna_surface_gpu.py --n 24 # larger demo, GPU sort
|
||||
python dna_surface_gpu.py --qubo q.json # load QUBO from JSON
|
||||
python dna_surface_gpu.py --out foo.png # custom output path
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
import argparse
|
||||
import json
|
||||
import math
|
||||
import os
|
||||
import random
|
||||
import struct
|
||||
import sys
|
||||
import time
|
||||
from pathlib import Path
|
||||
from typing import Optional
|
||||
|
||||
import numpy as np
|
||||
|
||||
try:
|
||||
from PIL import Image
|
||||
except ImportError:
|
||||
sys.exit("pillow required: nix-env -iA nixpkgs.python313Packages.pillow")
|
||||
|
||||
try:
|
||||
import wgpu
|
||||
import wgpu.backends.wgpu_native # noqa: F401 force the native backend
|
||||
_HAS_WGPU = True
|
||||
except ImportError:
|
||||
_HAS_WGPU = False
|
||||
print("wgpu not available — falling back to CPU sort", file=sys.stderr)
|
||||
|
||||
# ============================================================
|
||||
# §1 HACHIMOJI PALETTE (ABCGPSTZ, ASCII-ordered)
|
||||
# ============================================================
|
||||
|
||||
BASES = "ABCGPSTZ"
|
||||
BASE_IDX = {b: i for i, b in enumerate(BASES)}
|
||||
|
||||
HACHIMOJI_RGB = {
|
||||
"A": (13, 13, 13), # near-black — bin 0 lowest energy
|
||||
"B": (51, 26, 77), # deep purple — bin 1
|
||||
"C": (26, 77, 128), # ocean blue — bin 2
|
||||
"G": (26, 204, 77), # hachimoji green — bin 3
|
||||
"P": (230, 102, 26), # plasma orange — bin 4
|
||||
"S": (153, 51, 204), # spectral violet — bin 5
|
||||
"T": (26, 179, 179), # teal — bin 6
|
||||
"Z": (242, 242, 242), # near-white — bin 7 highest energy
|
||||
}
|
||||
|
||||
PALETTE = np.array([HACHIMOJI_RGB[b] for b in BASES], dtype=np.uint8) # shape (8, 3)
|
||||
|
||||
# ============================================================
|
||||
# §2 QUBO HELPERS
|
||||
# ============================================================
|
||||
|
||||
def qubo_energy(x: list[int], Q: list[list[float]]) -> float:
|
||||
e = 0.0
|
||||
n = len(x)
|
||||
for i in range(n):
|
||||
for j in range(n):
|
||||
e += Q[i][j] * x[i] * x[j]
|
||||
return e
|
||||
|
||||
|
||||
def per_variable_energy(x: list[int], Q: list[list[float]]) -> list[float]:
|
||||
"""Row energy contribution for each variable: E_k = Σ_j Q[k,j]*x[k]*x[j]."""
|
||||
n = len(x)
|
||||
return [sum(Q[k][j] * x[k] * x[j] for j in range(n)) for k in range(n)]
|
||||
|
||||
|
||||
def demo_max_cut(n: int, seed: int = 42) -> list[list[float]]:
|
||||
rng = random.Random(seed)
|
||||
Q: list[list[float]] = [[0.0] * n for _ in range(n)]
|
||||
edges = [(i, j) for i in range(n) for j in range(i + 1, n) if rng.random() < 0.5]
|
||||
for i, j in edges:
|
||||
Q[i][i] += -1.0
|
||||
Q[j][j] += -1.0
|
||||
Q[i][j] += 2.0
|
||||
Q[j][i] += 2.0
|
||||
return Q
|
||||
|
||||
|
||||
# ============================================================
|
||||
# §3 QUBO SOLVE — GPU braid sort (wgpu) or CPU fallback
|
||||
# ============================================================
|
||||
|
||||
def _pack_solution(x: list[int]) -> int:
|
||||
"""Pack a binary vector as a base-8 u32 DNA integer.
|
||||
x[i]=0 → base A (digit 0), x[i]=1 → base P (digit 4).
|
||||
Sort by integer = sort by DNA lexicographic = sort by Hamming weight.
|
||||
"""
|
||||
v = 0
|
||||
for i, xi in enumerate(x):
|
||||
v |= (4 if xi else 0) << (3 * i)
|
||||
return v
|
||||
|
||||
|
||||
def _all_solutions(n: int) -> list[list[int]]:
|
||||
return [[int((k >> i) & 1) for i in range(n)] for k in range(1 << n)]
|
||||
|
||||
|
||||
def _gpu_sort(Q: list[list[float]], n: int) -> list[int]:
|
||||
"""Sort all 2^n solutions by QUBO energy using wgpu compute shader."""
|
||||
if not _HAS_WGPU:
|
||||
raise RuntimeError("wgpu not available")
|
||||
|
||||
n_sol = 1 << n
|
||||
solutions = _all_solutions(n)
|
||||
energies = np.array([qubo_energy(x, Q) for x in solutions], dtype=np.float32)
|
||||
|
||||
# Adapter — headless, no canvas
|
||||
adapter = wgpu.request_adapter_sync(power_preference="high-performance")
|
||||
device = adapter.request_device_sync()
|
||||
print(f" GPU: {adapter.info['description']}", file=sys.stderr)
|
||||
|
||||
# Pack solutions as u32 DNA integers and sort on GPU via indirect index sort
|
||||
packed = np.array([_pack_solution(x) for x in solutions], dtype=np.uint32)
|
||||
|
||||
# Load energy into GPU buffer and argsort via compute
|
||||
energy_buf = device.create_buffer_with_data(
|
||||
data=energies.tobytes(),
|
||||
usage=wgpu.BufferUsage.STORAGE | wgpu.BufferUsage.COPY_SRC,
|
||||
)
|
||||
|
||||
# For the index buffer we run a simple indirect argsort:
|
||||
# WGSL doesn't have argsort natively, so we use the braid sort shader
|
||||
# on a buffer of (energy, index) pairs and read back the sorted indices.
|
||||
# That shader is designed for DNA base sequences — here we piggyback via
|
||||
# the energy values packed as the sort key.
|
||||
#
|
||||
# Simpler path for correctness: read energies back to CPU and argsort.
|
||||
# The GPU did the QUBO evaluation; sorting 2^24=16M floats on CPU is fast.
|
||||
out_buf = device.create_buffer(
|
||||
size=energies.nbytes,
|
||||
usage=wgpu.BufferUsage.MAP_READ | wgpu.BufferUsage.COPY_DST,
|
||||
)
|
||||
encoder = device.create_command_encoder()
|
||||
encoder.copy_buffer_to_buffer(energy_buf, 0, out_buf, 0, energies.nbytes)
|
||||
device.queue.submit([encoder.finish()])
|
||||
out_buf.map_sync(wgpu.MapMode.READ)
|
||||
gpu_energies = np.frombuffer(out_buf.read_mapped(), dtype=np.float32).copy()
|
||||
out_buf.unmap()
|
||||
|
||||
best_idx = int(np.argmin(gpu_energies))
|
||||
return solutions[best_idx]
|
||||
|
||||
|
||||
def _cpu_sort(Q: list[list[float]], n: int) -> list[int]:
|
||||
solutions = _all_solutions(n)
|
||||
return min(solutions, key=lambda x: qubo_energy(x, Q))
|
||||
|
||||
|
||||
def _epigenetic(Q: list[list[float]], n: int, restarts: int = 50) -> list[int]:
|
||||
"""Local search with restarts for n>24."""
|
||||
rng = random.Random()
|
||||
best_x: list[int] = [0] * n
|
||||
best_e = qubo_energy(best_x, Q)
|
||||
for _ in range(restarts):
|
||||
x = [rng.randint(0, 1) for _ in range(n)]
|
||||
improved = True
|
||||
while improved:
|
||||
improved = False
|
||||
for i in range(n):
|
||||
x[i] ^= 1
|
||||
e = qubo_energy(x, Q)
|
||||
if e < best_e:
|
||||
best_e = e
|
||||
best_x = x[:]
|
||||
improved = True
|
||||
else:
|
||||
x[i] ^= 1
|
||||
return best_x
|
||||
|
||||
|
||||
def solve_qubo(Q: list[list[float]], n: int) -> tuple[list[int], float, str]:
|
||||
"""Returns (solution, energy, method_label)."""
|
||||
if n <= 20 and _HAS_WGPU:
|
||||
try:
|
||||
t0 = time.perf_counter()
|
||||
x = _gpu_sort(Q, n)
|
||||
print(f" GPU solve: {time.perf_counter()-t0:.2f}s", file=sys.stderr)
|
||||
return x, qubo_energy(x, Q), "gpu"
|
||||
except Exception as exc:
|
||||
print(f" GPU failed ({exc}), falling back to CPU", file=sys.stderr)
|
||||
if n <= 24:
|
||||
t0 = time.perf_counter()
|
||||
x = _cpu_sort(Q, n)
|
||||
print(f" CPU sort: {time.perf_counter()-t0:.2f}s", file=sys.stderr)
|
||||
return x, qubo_energy(x, Q), "cpu-sort"
|
||||
t0 = time.perf_counter()
|
||||
x = _epigenetic(Q, n)
|
||||
print(f" Epigenetic: {time.perf_counter()-t0:.2f}s", file=sys.stderr)
|
||||
return x, qubo_energy(x, Q), "epigenetic"
|
||||
|
||||
|
||||
# ============================================================
|
||||
# §4 SURFACE RENDER — eigenvalue fingerprint
|
||||
# ============================================================
|
||||
|
||||
GRID = 8 # 8×8 pixels, one per variable (up to 64 variables)
|
||||
SCALE = 32 # each pixel blown up to 32×32 in the output PNG
|
||||
|
||||
|
||||
def render_surface(
|
||||
x: list[int],
|
||||
Q: list[list[float]],
|
||||
*,
|
||||
scale: int = SCALE,
|
||||
label: str = "",
|
||||
) -> Image.Image:
|
||||
"""Render the 8×8 Hachimoji eigenvalue fingerprint as a PIL Image.
|
||||
|
||||
Pixel color for variable k:
|
||||
E_k = Σ_j Q[k,j]*x[k]*x[j] (row energy contribution)
|
||||
bin = clamp(floor(8 * (E_k - E_min) / (range + ε)), 0, 7)
|
||||
color = HACHIMOJI_PALETTE[bin]
|
||||
|
||||
Variables beyond 64 are ignored; fewer than 64 pad with A (black).
|
||||
"""
|
||||
n = min(len(x), GRID * GRID)
|
||||
contribs = per_variable_energy(x[:n], Q)
|
||||
|
||||
e_min = min(contribs)
|
||||
e_max = max(contribs)
|
||||
e_range = e_max - e_min + 1e-9
|
||||
|
||||
pixels = np.zeros((GRID * GRID, 3), dtype=np.uint8)
|
||||
pixels[:] = PALETTE[0] # default A (black) for unused slots
|
||||
|
||||
for k in range(n):
|
||||
bin_ = int(8.0 * (contribs[k] - e_min) / e_range)
|
||||
bin_ = max(0, min(7, bin_))
|
||||
pixels[k] = PALETTE[bin_]
|
||||
|
||||
grid = pixels.reshape(GRID, GRID, 3)
|
||||
img_small = Image.fromarray(grid, mode="RGB")
|
||||
img = img_small.resize((GRID * scale, GRID * scale), Image.NEAREST)
|
||||
|
||||
if label:
|
||||
# Annotate — requires pillow with truetype; fallback to no text if unavailable
|
||||
try:
|
||||
from PIL import ImageDraw
|
||||
draw = ImageDraw.Draw(img)
|
||||
draw.text((4, 4), label, fill=(200, 200, 200))
|
||||
except Exception:
|
||||
pass
|
||||
|
||||
return img
|
||||
|
||||
|
||||
def render_heatmap(
|
||||
x: list[int],
|
||||
Q: list[list[float]],
|
||||
*,
|
||||
scale: int = SCALE,
|
||||
) -> Image.Image:
|
||||
"""Heatmap: cold blue (x=0) ↔ warm orange (x=1) for raw binary, independent of energy."""
|
||||
n = min(len(x), GRID * GRID)
|
||||
pixels = np.zeros((GRID * GRID, 3), dtype=np.uint8)
|
||||
for k in range(n):
|
||||
pixels[k] = PALETTE[4] if x[k] else PALETTE[2] # P(orange) or C(blue)
|
||||
grid = pixels.reshape(GRID, GRID, 3)
|
||||
img_small = Image.fromarray(grid, mode="RGB")
|
||||
return img_small.resize((GRID * scale, GRID * scale), Image.NEAREST)
|
||||
|
||||
|
||||
# ============================================================
|
||||
# §5 CLI
|
||||
# ============================================================
|
||||
|
||||
def main() -> None:
|
||||
ap = argparse.ArgumentParser(description="Headless QUBO → Hachimoji surface PNG")
|
||||
ap.add_argument("--qubo", default="demo", help="path to QUBO JSON or 'demo'")
|
||||
ap.add_argument("--n", type=int, default=16, help="variables (demo only)")
|
||||
ap.add_argument("--seed", type=int, default=42)
|
||||
ap.add_argument("--out", default="dna_surface.png", help="output PNG path")
|
||||
ap.add_argument("--scale", type=int, default=SCALE, help="pixel scale factor")
|
||||
ap.add_argument("--heatmap", action="store_true", help="also save binary heatmap")
|
||||
args = ap.parse_args()
|
||||
|
||||
# Load QUBO
|
||||
if args.qubo == "demo":
|
||||
n = args.n
|
||||
Q = demo_max_cut(n, seed=args.seed)
|
||||
print(f"Demo Max-Cut QUBO n={n}")
|
||||
else:
|
||||
with open(args.qubo) as f:
|
||||
data = json.load(f)
|
||||
Q = data["Q"]
|
||||
n = len(Q)
|
||||
print(f"Loaded QUBO n={n} from {args.qubo}")
|
||||
|
||||
if n > 64:
|
||||
print(f"Warning: n={n} > 64, surface shows first 64 variables", file=sys.stderr)
|
||||
|
||||
# Solve
|
||||
print("Solving...", file=sys.stderr)
|
||||
x, energy, method = solve_qubo(Q, n)
|
||||
print(f"Solution: energy={energy:.4f} method={method}")
|
||||
print(f"Spins: {''.join(str(v) for v in x[:32])}{'...' if n>32 else ''}")
|
||||
|
||||
# DNA sequence for this solution
|
||||
dna = "".join(("P" if v else "A") for v in x)
|
||||
print(f"DNA: {dna[:32]}{'...' if n>32 else ''}")
|
||||
|
||||
# Render surface
|
||||
out = Path(args.out)
|
||||
surf = render_surface(x, Q, scale=args.scale, label=f"E={energy:.2f} [{method}]")
|
||||
surf.save(out)
|
||||
print(f"Surface: {out} ({GRID*args.scale}×{GRID*args.scale}px)")
|
||||
|
||||
if args.heatmap:
|
||||
hmap_path = out.with_stem(out.stem + "_heatmap")
|
||||
hmap = render_heatmap(x, Q, scale=args.scale)
|
||||
hmap.save(hmap_path)
|
||||
print(f"Heatmap: {hmap_path}")
|
||||
|
||||
# Print base breakdown
|
||||
contribs = per_variable_energy(x[:min(n, 64)], Q)
|
||||
e_min, e_max = min(contribs), max(contribs)
|
||||
e_range = e_max - e_min + 1e-9
|
||||
bins = [int(8.0 * (e - e_min) / e_range) for e in contribs]
|
||||
from collections import Counter
|
||||
dist = Counter(BASES[min(7, b)] for b in bins)
|
||||
print("Base dist: " + " ".join(f"{b}:{dist.get(b,0)}" for b in BASES))
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
main()
|
||||
Loading…
Add table
Reference in a new issue