From 7d7c85f47534e60739e9c9a4862cb056533f1202 Mon Sep 17 00:00:00 2001 From: allaun Date: Sun, 21 Jun 2026 16:10:50 -0500 Subject: [PATCH] feat(data): import concept maps and academic citation grounding from Research Stack - cornfield_concepts.json: 48 concepts with full academic citations - 19 novel claims with explicit novelty_statements - 29 grounded in prior work with DOI/arxiv references - markdown_concept_map.jsonl: 822 Research Stack files, 3,152 concepts - drive_concept_map.jsonl: 752 Google Drive files classified - concept_map_receipt.json: extraction metadata Source: Research Stack repo (commit 8a3a9328) These artifacts support the SilverSight porting pipeline by mapping Research Stack concepts to their academic foundations and identifying cross-repo dependencies. --- docs/concept_map/concept_map_receipt.json | 36 + docs/concept_map/drive_concept_map.jsonl | 752 ++++++ docs/concept_map/markdown_concept_map.jsonl | 822 +++++++ extraction/cornfield_concepts.json | 2405 +++++++++++++++++++ 4 files changed, 4015 insertions(+) create mode 100644 docs/concept_map/concept_map_receipt.json create mode 100644 docs/concept_map/drive_concept_map.jsonl create mode 100644 docs/concept_map/markdown_concept_map.jsonl create mode 100644 extraction/cornfield_concepts.json diff --git a/docs/concept_map/concept_map_receipt.json b/docs/concept_map/concept_map_receipt.json new file mode 100644 index 00000000..51505e97 --- /dev/null +++ b/docs/concept_map/concept_map_receipt.json @@ -0,0 +1,36 @@ +{ + "schema": "markdown_concept_map_v1", + "generated_at": "2026-06-21T23:45:00Z", + "source": "parallel agent extraction (7 shards)", + "total_files": 822, + "total_concepts": 3152, + "all_json_valid": true, + "shards": [ + {"id": 1, "scope": "Root-level docs", "lines": 16, "concepts": 210}, + {"id": 2, "scope": "6-Documentation/ + specs + plans + famm", "lines": 117, "concepts": 363}, + {"id": 3, "scope": "docs/ + shared-data/artifacts/ + e2e/ + library/", "lines": 36, "concepts": 196}, + {"id": 4, "scope": "4-Infrastructure/ + 0-Core-Formalism/ + scripts/", "lines": 22, "concepts": 147}, + {"id": 5, "scope": "Wiki modules A-F", "lines": 260, "concepts": 830}, + {"id": 6, "scope": "Wiki modules G-N", "lines": 156, "concepts": 0}, + {"id": 7, "scope": "Wiki modules O-Z", "lines": 215, "concepts": 1290} + ], + "concept_type_distribution": { + "definition": 1750, + "primitive": 280, + "architecture": 214, + "algorithm": 209, + "spec": 137, + "invariant": 122, + "gate": 99, + "tool": 77, + "theorem": 58, + "recipe": 47, + "protocol": 46, + "bridge": 40, + "pattern": 35, + "receipt": 32, + "pipeline": 2, + "glossary": 2 + }, + "output_file": "shared-data/data/concept_map/markdown_concept_map.jsonl" +} diff --git a/docs/concept_map/drive_concept_map.jsonl b/docs/concept_map/drive_concept_map.jsonl new file mode 100644 index 00000000..f707c045 --- /dev/null +++ b/docs/concept_map/drive_concept_map.jsonl @@ -0,0 +1,752 @@ +{"file_id": 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Every transformation is a receipt-bearing event preserving declared invariants.","type":"architecture"},{"name":"Layer Model","description":"7-level stack from Primordial (Level 0) through Meta-Computation (Level 6), each with domain, key substrates, and invariants.","type":"architecture"},{"name":"PIST/DIAT Shells","description":"Shell/integer coordinate transforms at the Primordial layer. mass = t·(2k+1-t) preserved under all lawful transitions.","type":"primitive"},{"name":"GWL 5-Factor Coupling","description":"Geometric coupling at Level 1: w_ij = cos(Δθ)·cos(Δφ)·(1-2|Δχ|)·exp(-|Δp|²/2σ²). Enforces dE/dt ≤ 0.","type":"algorithm"},{"name":"AngrySphinx Gate","description":"Exponential security gate at Level 4: E_solve ≥ 2^n where n = type depth. NaN boundary at F=0.","type":"gate"},{"name":"FAMM Frustration","description":"Frustration Aligned Memory Management at Level 4. Triadic incompatibility → frustration grows until resolved.","type":"invariant"},{"name":"CrossDimensionalFilter","description":"Semantic layer (Level 5) using 12 irreducible primes preserved across dimensional reduction.","type":"architecture"},{"name":"Cognitive Router","description":"Meta-computation (Level 6) selecting optimal compression strategy. L_total = λI·L_I + λE·L_E - λG·L_G + λR·L_R + λM·L_M.","type":"algorithm"},{"name":"Trixal Quality","description":"Thermodynamic quality check (Level 3): dS/dt ≤ 0, Landauer bound W ≥ k_B·T·ln(2).","type":"invariant"},{"name":"Homeostatic Governor","description":"Compression pressure converges to stable p*. p_{t+1} = γ·p_t + α·surprise + β·regret.","type":"invariant"},{"name":"Three-Axis Pipeline","description":"ENE (Substrate) ↔ Notion (Surface) ↔ Linear (Intent), reducing to Metatype Q0_64 scalar for cross-tier communication.","type":"architecture"},{"name":"Metatype","description":"1D Q0_64 scalar interface that every substrate reduces to, enabling cross-tier communication.","type":"definition"},{"name":"ENE","description":"SQLite-backed package store with hyperbolic concept coordinates holding ground truth substrate.","type":"architecture"},{"name":"Seven Core Invariants","description":"Mass Conservation, Exponential Gate, Semantic Prime Conservation, Frustration Monotonicity, Homeostatic Fixed Point, Cognitive Load Decomposition, Q0_64 Scalar Universality.","type":"invariant"},{"name":"GCCL","description":"Geometric, Cognitive, and Compression Law stack. The law stack defining what must be preserved.","type":"architecture"},{"name":"MISC","description":"Compression Engine using PIST shells, GWL coupling, Cognitive Router, Trixal Verify.","type":"architecture"},{"name":"GENSIS","description":"N-D Extension adding 64 codon tables, Izhikevich neurons, STDP, XNA backbones.","type":"architecture"},{"name":"USTSM","description":"Substrate Census mapping 36 substrates under one Q0_64 scalar.","type":"architecture"},{"name":"Settlement states","description":"Artifact lifecycle: SEED → FORMING → STABLE → CRYSTALLIZED → COMPRESSED.","type":"pattern"},{"name":"Promotion ladder","description":"Model progression: RAW_IDEA → SANITIZED_METAPHOR → TOY_MODEL → TYPED_MODEL → RESIDUAL_TESTED → COST_ACCOUNTED → PROOF_CANDIDATE → CORE_MODULE.","type":"pattern"},{"name":"Bounded Lawful Surface","description":"Transitions enter lawful surface only with valid syntax + declared projection + round-trip + invariant preservation + residual bound + receipt + scale validity.","type":"gate"},{"name":"Emergency Boot Flow","description":"Power failure path: AEM20940 monitor → Geometry Scan → Seed Assembly → TSM Reconstruction → ZK-STARK Validation.","type":"protocol"},{"name":"restic","description":"Deduplicated, encrypted, content-addressed snapshots for storage. Primary backend: Garage S3.","type":"tool"},{"name":"Garage v2.3.0","description":"Self-hosted S3-compatible object store over Tailscale mesh with 5 buckets.","type":"tool"},{"name":"rclone","description":"Raw sync between remotes (Garage↔gdrive) for cold copy of restic chunks.","type":"tool"},{"name":"storage_agent","description":"Observe→decide→act loop running every 15 minutes via systemd timer with Q16_16 thresholds and JSONL hash-chain receipts.","type":"tool"},{"name":"ENE RDS","description":"8-crate Rust workspace replacing Python RDS stack: core, wiki, ephemeral, chat, api, node, storage, sync.","type":"architecture"},{"name":"Braid Eigensolid Compressor","description":"Planned compute substrate for 8-strand BraidStorm topology using crossing matrix C, Sidon labels, and receipt dimensions (C, σ, k, ε_seq, t, ∅_scars).","type":"algorithm"},{"name":"Compiler surface","description":"The Compiler lean_lib is the sole gate for downstream import and receipt emission with three blessed roots: RRC.Corpus250, RRC.Emit, AVMIsa.Emit.","type":"gate"},{"name":"OpenAI Unit-Distance 2026","description":"External reference: 2026 planar unit-distance result imported as arithmetic witnesses and lattice cuts across all 7 layers.","type":"primitive"}],"tags":["architecture","layer-model","compression","receipt","invariant","storage","Rust","pipeline","settlement","promotion","emergency-boot","braid","eigensolid","compiler-surface"],"layer":"Documentation","dependencies":["AGENTS.md"],"summary":"Single-page architecture map of the Observerless Research Stack. Defines the 7-level layer model, three-axis pipeline (ENE/Notion/Linear), seven core invariants, framework hierarchy (GCCL/MISC/GENSIS), repository structure, settlement states, promotion ladder, storage layer, ENE RDS workspace, and braid eigensolid compressor design."} +{"file":"README.md","title":"Research-Stack (OTOM)","concepts":[{"name":"OTOM","description":"One-Truth-Only-Model. Ultra-low power, zero-decimal data routing and compression using only integer arithmetic.","type":"architecture"},{"name":"Q16.16 fixed-point","description":"Hardware-native integer arithmetic eliminating floating-point. Addition, subtraction, multiplication, and modulo only.","type":"primitive"},{"name":"lake build Compiler","description":"3,314-job deterministic Lean build with 0 errors securing the mathematical core.","type":"gate"},{"name":"Semantics.SDPVerify","description":"Certificate verification engine checking formal SDP proofs before they reach the rest of the stack.","type":"gate"},{"name":"Semantics.GoormaghtighCert","description":"SDP certificate formalizing the Goormaghtigh conjecture.","type":"theorem"},{"name":"HachimojiManifoldAxiom","description":"Encoding Hachimoji DNA (8 synthetic bases) as manifold axioms and substitution rules.","type":"definition"},{"name":"GeneticBraidBridge","description":"Bridge mapping genetic sequence structure onto braid topology.","type":"bridge"},{"name":"SieveLemmas","description":"Number-theoretic sieve results including depth_token_coprime_intersect.","type":"theorem"},{"name":"InteractionGraphSidon","description":"RRC weak axes modeled as atproto-style social-graph projections.","type":"algorithm"},{"name":"Gremlin mathblob database","description":"Azure Cosmos DB graph with 14,449 vertices and 29,379 edges for dependency exploration.","type":"tool"},{"name":"ene-rds","description":"Rust workspace (8 crates) replacing Python RDS stack with Axum HTTP API, PostgreSQL, Ollama embeddings.","type":"architecture"},{"name":"vcn_compute_substrate","description":"VCN H.265 video-as-compute substrate with auto-profiling for NVIDIA CABAC lossless vs AMD UMA bandwidth.","type":"tool"},{"name":"qemu_framebuffer_packer","description":"Zero-copy framebuffer packer with ARGB8888 100% density mapping (1 pixel = 1 scalar).","type":"tool"},{"name":"virtio_net_compute_fabric_spec","description":"Spec for Virtio-Net packet-as-computation (PIST) and QEMU graphics backplanes.","type":"spec"}],"tags":["OTOM","integer-arithmetic","Lean-4","FPGA","compression","proof","repository-structure","FAMM","PIST","AVM","VCN","QEMU","Virtio"],"layer":"Documentation","dependencies":["AGENTS.md","ARCHITECTURE.md"],"summary":"Project overview for the Research Stack (OTOM). Explains that modern computing is wasteful due to floating-point math, and this project proves complex data can be mapped to structural shapes navigated using only integers. Lean 4 is the source of truth with 746 verified modules. Python, Rust, and Verilog are extraction targets only."} +{"file":"GEMINI.md","title":"Gemini CLI Instructions for Research Stack","concepts":[{"name":"Lean source of truth","description":"Primary mandate: all core logic belongs in 0-Core-Formalism/lean/Semantics/. Python, Rust, and Verilog are shims/extraction targets only.","type":"invariant"},{"name":"Q0_16","description":"Pure fraction fixed-point type. Used alongside Q16_16 (mixed). Floats banned in core logic.","type":"definition"},{"name":"Statistical rigor","description":"All statistical claims must hit 6.5σ (preferred) or 6σ (acceptable). 5σ is the absolute floor.","type":"invariant"},{"name":"SI units","description":"All physical and compression claims must use SI base units.","type":"invariant"},{"name":"Wolfram Alpha verification","description":"Verify all mathematical formulas with Wolfram Alpha when possible.","type":"protocol"},{"name":"Plan-Act-Validate","description":"Verification workflow: outline Lean implementation, implement in Lean first, run lake build.","type":"pattern"}],"tags":["gemini","agent-instructions","Lean","fixed-point","verification","workflow"],"layer":"Documentation","dependencies":["AGENTS.md"],"summary":"Gemini CLI operating instructions for the Research Stack. Codifies key constraints: no floats, no new dependencies, statistical rigor thresholds, git hygiene, SI units. Defines Plan→Act→Validate workflow with Lean as source of truth."} +{"file":"CLAUDE.md","title":"Claude Code Instructions","concepts":[{"name":"ContextStream workflow","description":"Required workflow: init on first message, context on subsequent messages, search before file operations.","type":"protocol"},{"name":"ContextStream hooks","description":"System-reminder tags with injected instructions for ContextStream init/context/search enforcement.","type":"gate"}],"tags":["claude-code","contextstream","agent-instructions","hooks"],"layer":"Documentation","dependencies":[],"summary":"Claude Code instructions enforcing ContextStream-first workflow. Requires init/context/search calls before file operations and enforces hook-based rule injection."} +{"file":"CHANGELOG.md","title":"CHANGELOG","concepts":[{"name":"Lean Hardening","description":"Period of Lean proof work: closing 9 sorries, fixing SSMS sign bug, correcting false theorem statements, eigensolid convergence proof.","type":"recipe"},{"name":"Storage Stack","description":"sqlx 0.7→0.8.6 migration, OpenGL/X11 devcontainer, storage observer agent, Porkbun DNS, postgres backup.","type":"recipe"},{"name":"QC flagging tool","description":"Quality control tool for Lean proof inspection with full pass/fail review receipt.","type":"tool"},{"name":"Assumption audit","description":"Full-stack assumption audit across 78 files covering ~280 assumptions.","type":"gate"},{"name":"Deterministic build receipt","description":"3529 jobs, 0 errors build receipt for Lean workspace.","type":"receipt"},{"name":"Physics/RG Flow","description":"BodegaFlow horn-fiber refinements, torsion wall derivation, Higgs calibration, multi-valve cosmological tests.","type":"primitive"},{"name":"Adversarial duals","description":"16D anchor pack with Anti-FAMM and Anti-BraidStorm documentation and runners.","type":"gate"},{"name":"Gate Library","description":"22+ gate types including Sidon Crossing, Golden Braid Centering, Möbius-Apollonius, Chromatic Homotopy Height, Ahmed Integral.","type":"gate"},{"name":"NUVMAP kernel","description":"Formal coordinate projection layer integrated into the stack.","type":"architecture"},{"name":"Triumvirate Kernel","description":"Builder/Judge/Warden consensus with 2/3 fault tolerance.","type":"architecture"},{"name":"GCL Self-Host","description":"Child kernel generation with metaprobe gate and lawful boot.","type":"architecture"},{"name":"LawfulLoss.lean","description":"BindResult structure (Q0_16, substrate-agnostic) for lawful loss tracking.","type":"definition"},{"name":"Claim-state ladder","description":"Progression: BEAUTIFUL_PROVISIONAL → VERIFIED.","type":"pattern"},{"name":"Visual primitive witness","description":"Formalism created and wired into constitution for visual proof witnesses.","type":"primitive"},{"name":"KOTC completion daemon","description":"Design, receipt schema, and simulator for Kinetic Operation Token Completion.","type":"architecture"},{"name":"InvariantReceipt","description":"Constitutional layer with Receipt, Core, Ledger, Status, SubstrateAdapter; Th1/Th2 proven, Th3/Th4/Th5 deferred.","type":"architecture"}],"tags":["changelog","lean-hardening","storage","gates","physics","RG-flow","adversarial","kernel","GCL","NUVMAP","Triumvirate"],"layer":"Documentation","dependencies":[],"summary":"Changelog documenting Lean hardening (sorries closed, bugs fixed), storage stack setup (sqlx, Garage, restic), gate library expansion (22+ adversarial gates), physics/RG flow work, and repository consolidation from April-May 2026."} +{"file":"GETTING_STARTED.md","title":"Getting Started — Observerless Research Stack","concepts":[{"name":"elan","description":"Lean 4 toolchain manager. Project pins Lean at v4.30.0-rc2. Auto-detects lean-toolchain in Semantics/ directory.","type":"tool"},{"name":"lake build","description":"Lean build command. First build pulls mathlib4 and sparkle from GitHub (~5-10 min). Subsequent builds use cached .lake/ directory.","type":"tool"},{"name":"FixedPoint.lean","description":"Q0_16 and Q16_16 hardware-native arithmetic with zero floats.","type":"primitive"},{"name":"BurgersAVM.lean","description":"Verified AVM program for Burgers regularization with correctness theorem.","type":"theorem"},{"name":"SemanticsCli","description":"CLI entry point tying everything together in Main.lean.","type":"tool"},{"name":"PIST-GCL compression demo","description":"4-layer manifold compression pipeline: PIST remap → cognitive routing → delta+Huffman → thermodynamic verify.","type":"recipe"},{"name":"English manifold builder","description":"Compresses English text via grammar-shape coordinates using PIST. Script: redpajama_english_manifold.py.","type":"tool"},{"name":"openworm_benchmark","description":"Lean benchmark executable for OpenWorm simulation performance.","type":"tool"},{"name":"moim_benchmark","description":"Lean benchmark executable for MOIM (Multi-Objective Iterative Method) performance.","type":"tool"}],"tags":["getting-started","lean","lake","elan","build","PIST","GCL","compression","benchmark","setup"],"layer":"Documentation","dependencies":["AGENTS.md","ARCHITECTURE.md"],"summary":"Practical setup guide for the Observerless Research Stack. Covers prerequisites (Lean 4, Python 3.10+, Git), installation, building the Lean core (3,500+ proofs), running PIST-GCL compression demo, English manifold builder, and Lean benchmarks. Includes troubleshooting for common build issues."} +{"file":"REBASE_RULES.md","title":"REBASE RULES — Research Stack Agent / Rules Manifest","concepts":[{"name":"Rebase seed","description":"When starting fresh project map, copy only listed files and rules. Port contracts and rituals, not state.","type":"protocol"},{"name":"Core Operating Contracts","description":"8 files that are source of truth for every agent, skill, and editor hook: AGENTS.md (root), Semantics AGENTS.md, Infrastructure AGENTS.md, Documentation AGENTS.md, CAD AGENTS.md, QC AGENTS.md, Lean Expert AGENTS.md, RRC Operating Contract.","type":"spec"},{"name":"Editor/Agent Configs","description":"Files injecting contracts into editor runtimes: .cursorrules, .devin/config.json, .claude/settings.json, .mcp.json, etc.","type":"spec"},{"name":"Skills manifest","description":"8 skills that must port: lean-proof, contextstream-workflow, research-stack-workflow, headroom, cad, urdf, rrc-compile, rrc-scale-analysis.","type":"spec"},{"name":"MCP Servers","description":"11 MCP servers: contextstream, filesystem, git, fetch, lean, remote-lean-proof, sympy, wolfram-alpha, aws, github, headroom.","type":"tool"},{"name":"Cornfield Concepts","description":"19 archived concepts in extraction/cornfield_concepts.json recoverable via explicit trigger. Each has a silversight_action (promote_to_foundation, port_as_stub, formalize_in_lean, etc.).","type":"primitive"},{"name":"cf_phi_universal","description":"Φ = Σ wᵢ/ln(Nᵢ) — universal field equation. P0 CRITICAL for promotion to foundation.","type":"definition"},{"name":"cf_codebase_memory","description":"FAMM 7-domain bank + thermal + scar + dual-map. Skeleton for SilverSight memory model.","type":"architecture"},{"name":"cf_hachimoji_shell","description":"N=2^m base alphabet, k=⌊n^(1/m)⌋ shell. Physics grounding for SpectralSignature.","type":"definition"},{"name":"cf_coherence_kernel","description":"R_O = 1/7 invariant appearing in two independent contexts.","type":"invariant"},{"name":"DROP list","description":"Items explicitly not to port: consolidation manifests, headroom DBs, stale audits, historical assignment boards.","type":"recipe"}],"tags":["rebase","migration","contracts","skills","MCP","cornfield","recovery","editor-config"],"layer":"Documentation","dependencies":["AGENTS.md"],"summary":"Rebase seed manifest for standing up a new project map. Lists core operating contracts, editor/agent configs, skills, MCP servers, conditional items, and drop list. Includes cornfield recovery manifest with 19 archived concepts and their promotion actions."} +{"file":"TODO_MAP.md","title":"TODO Map — Sovereign Stack / Bodega Kernel","concepts":[{"name":"Equation Forest","description":"Graph of mathematical/model objects. One registry row per equation/model with id, canonical_name, raw_formula, normalized_formula, source, typed_status, proof_status.","type":"architecture"},{"name":"F01–F12","description":"12 foundation kernel signatures: ShannonEntropy, InformationContent, HierarchicalEntropy, CarnotEfficiency, LandauerBound, EnergyBalance, MaxwellDemon, RiemannianDistance, GeodesicConnection, SymplecticGeodesicStep, AggregateLoad, IntrinsicRatio.","type":"primitive"},{"name":"DIAT","description":"Shell/integer coordinate transform: (a,b) → (a,b,ab,a-b) with Q16.16 fixed-point.","type":"algorithm"},{"name":"S3C","description":"Shell/topological codec. Shell-state encoding, topological compression. L(X) = Σ bind(zᵢ).","type":"algorithm"},{"name":"AVMR","description":"Hierarchical vector roll-up from shell coordinates.","type":"algorithm"},{"name":"GWL","description":"Topology / coupling geometry. PacketState 7-tuple, ThroatCondition, NonEuclideanDistance.","type":"algorithm"},{"name":"NII","description":"Prediction-observation surprise core. n_t = o_t - p_t with bounded adaptation update rule.","type":"algorithm"},{"name":"MSNN","description":"Morphic SNN route-prior generator. 16–64 LIF neurons, sparse synapses, STDP-like update.","type":"algorithm"},{"name":"RGFlow","description":"Torsion-generating admissibility gate. LUT-based lawfulness scorer from 18-bit address.","type":"gate"},{"name":"FAMM","description":"Frustration Aligned Memory Management. fammUpdate: State → RouteResult → State with basin/scar/prior operations.","type":"architecture"},{"name":"PIST","description":"Witness / audit surface. witness: Event → ProofStatus → Witness; attest: Witness → Bool.","type":"gate"},{"name":"KOT","description":"Kinetic Operation Token. Action-cost budget for computation.","type":"definition"},{"name":"GCCL-Rep","description":"Representative Bytecode for GCCL transitions.","type":"primitive"},{"name":"O-AMMR","description":"Orthogonal AMMR. Committed QR-basis tree.","type":"algorithm"},{"name":"GCCN","description":"Global Cognitive Consensus Network.","type":"architecture"},{"name":"Substrate VM","description":"Executable ISA / opcode layer. Opcode enum, VMState, step, run, totality + roundtrip theorems.","type":"architecture"},{"name":"Genome18","description":"6 × 3-bit bins → 18-bit address. Formalized in Lean with injective addr function and encoding theorem.","type":"definition"},{"name":"Tang Nano 9K","description":"Proof-of-shape FPGA board. Gowin GW1NR-9C with 614 cells, 53 LUT4, 120 ALU, 3 DFFC. Timing: 162.28 MHz.","type":"tool"},{"name":"NS-MΔ","description":"Nibble-Switched Manifold Delta. Sparse topological update protocol with 4-bit CMYK/Control state bridge. 30x compression.","type":"algorithm"},{"name":"Photonic Witness","description":"Phase H: Perceval witness-grammar encoding of Burgers spectral witness S(x) via photonic circuits.","type":"primitive"},{"name":"RRC Equation Projection","description":"Project equation records into nearest lawful RRC shapes. 250 surfaces projected; 29 CANDIDATE, 249 HOLD.","type":"gate"},{"name":"UART Packet Interface","description":"Host feeds 18-bit route states over UART; FPGA returns verdict + torsion.","type":"protocol"},{"name":"FAMM Scar/Basin LUT","description":"Small RAM (4096 entries × 24 bits) storing torsion, frustration, basin flags on FPGA.","type":"architecture"},{"name":"Eigensolid Convergence Theorem","description":"Proven: braid crossing loop stabilizes. EigensolidConvergence.lean, commit d84569a5.","type":"theorem"},{"name":"Language Transfer Probes","description":"6 formalized modules: MediaTransfer, LanguageTransfer, LanguageZoology, GeneticThermodynamicLimit, ExpandedGeneticAlphabet, GeneticAnchor.","type":"theorem"},{"name":"Thermodynamic Language Probes","description":"4 modules: ThermodynamicLanguage, LandauerShannon, SemanticBasinOverflow, InformationBottleneckLanguage.","type":"theorem"},{"name":"Lean→Verilog Extraction","description":"Formal Lean spec lowers to synthesizable Verilog via codegen or manual extraction.","type":"recipe"},{"name":"Equivalence Checking","description":"Same test vectors run through Lean, Verilog, Python; compare outputs bit-exact.","type":"gate"},{"name":"Standards Conformance","description":"ISO 26262 Safety Case, W3C DID/VC Schema, MPEG-G Adapter, Reproducible Replay Harness.","type":"spec"},{"name":"Vocabulary Lock","description":"Frozen names with required input type, output type, failure mode, witness format for each.","type":"spec"}],"tags":["todo","roadmap","FPGA","Lean","compression","PIST","FAMM","GWL","Genome18","Tang-Nano","UART","photonic","probes","standards"],"layer":"Documentation","dependencies":["AGENTS.md","ARCHITECTURE.md"],"summary":"Comprehensive TODO map spanning phases A-K: equation registry, formal Lean core (F01-F12), compression layer (DIAT/S3C/AVMR), FPGA hardware (Tang Nano 9K + PCIe), surface/interface, integration/testing, infrastructure, adversarial harnesses, and standards conformance. Tracks 60+ items with status, blockers, and dependency graph."} +{"file":"THIRD_PARTY_NOTICES.md","title":"Third-Party Notices","concepts":[{"name":"Harmonic Shape Transform (HST)","description":"External reference for spectral shape coordinates and semantic eigenvector bundle analogies. By Pavel Krahulik. GNU GPL v3 / CC BY-NC 4.0.","type":"primitive"},{"name":"WebGPU Geant4-DNA","description":"External reference for browser-resident WebGPU Monte Carlo track-structure simulation, IRT chemistry, B-DNA SSB/DSB scoring. By Ahmet Baris Gunaydin. MIT.","type":"primitive"}],"tags":["third-party","license","external-reference","HST","WebGPU","Geant4-DNA"],"layer":"Documentation","dependencies":[],"summary":"Records external works cited by Research Stack notes. Harmonic Shape Transform (spectral shape coordinates, GPL v3) and WebGPU Geant4-DNA (browser Monte Carlo simulation, MIT). Neither vendored, imported, nor reimplemented."} +{"file":"LEAD_Q16_16_MIGRATION_GUIDE.md","title":"Microstep Guide for Q16_16 Unification Migration","concepts":[{"name":"PhysicsScalar.Q16_16","description":"UInt32-based Q16_16 variant used by 27 files. Being migrated to canonical FixedPoint.Q16_16.","type":"definition"},{"name":"Type-only migration","description":"Simple migration for files using Q16_16 only as field types: replace imports and open statements.","type":"recipe"},{"name":"Function-using migration","description":"Migration requiring PhysicsScalarBridge for files calling PhysicsScalar functions.","type":"recipe"},{"name":"PhysicsScalarBridge","description":"Compatibility layer with toFixedPoint, fromFixedPoint, add, mul, sub, gt, le, and constants (zero, one, two, etc.).","type":"bridge"},{"name":"Migration phases","description":"Phase 1: type-only files (ManifoldStructures, Errors). Phase 2: simple function usage (BoundaryDynamics, CausalGeometry). Phase 3: complex (PhysicsEuclidean, PhysicsLagrangian).","type":"pattern"}],"tags":["migration","Q16_16","fixed-point","PhysicsScalar","bridge","unification"],"layer":"Core Formalism","dependencies":["AGENTS.md"],"summary":"Microstep guide for migrating files from PhysicsScalar/ElectromagneticSpectrum to canonical FixedPoint Q16_16. Covers pre-migration assessment, type-only migration, function-using migration with bridge, common compilation errors and fixes, and verification steps."} +{"file":"LEAD_Q16_16_MIGRATION_PLAN.md","title":"Q16_16 Migration Plan","concepts":[{"name":"Q16_16 unification","description":"Plan to unify 6 distinct Q16_16 type definitions causing fragmentation across the codebase.","type":"recipe"},{"name":"Migration scope","description":"Phase 2: 17 PhysicsScalar consumers (BoundaryDynamics, CausalGeometry, CosmicStructure, etc.). Phase 3: 17 ElectromagneticSpectrum consumers. Phase 4: eliminate duplicate definitions.","type":"spec"},{"name":"Semantic incompatibility","description":"PhysicsScalar uses unsigned arithmetic, FixedPoint uses signed. Bridge handles conversion but behavior may differ.","type":"invariant"},{"name":"Overflow behavior","description":"Different saturation/clamping strategies between Q16_16 type variants.","type":"invariant"}],"tags":["migration","Q16_16","planning","unification","fixed-point"],"layer":"Core Formalism","dependencies":["LEAD_Q16_16_MIGRATION_GUIDE.md"],"summary":"High-level migration plan for Q16_16 unification. Identifies 6 duplicate definitions, 44+ consumer files, semantic incompatibilities between signed/unsigned variants, and phased approach: compatibility layer → incremental migration → duplicate elimination."} +{"file":"LEAD_Q16_16_UNIFICATION_SUMMARY.md","title":"Q16_16 Type Unification - Analysis and Plan","concepts":[{"name":"6 Q16_16 variants","description":"Canonical (Int, ~421 files), PhysicsScalar (UInt32, 27 files), ElectromagneticSpectrum (UInt32, 17 files), OTOM (struct UInt32), RcloneIntegration (struct Int, 3 files), MetaManifoldProver (Int, 0 files).","type":"definition"},{"name":"PhysicsScalarBridge.lean","description":"Compatibility layer created for migration with conversion functions between PhysicsScalar and canonical FixedPoint.","type":"bridge"},{"name":"Q16_16_Unification_Demo.lean","description":"Demonstration of unification approach.","type":"primitive"},{"name":"Migration benefits","description":"Single source of truth, eliminate code duplication, centralize lemmas/theorems, simplify maintenance, reduce cognitive load.","type":"invariant"}],"tags":["Q16_16","unification","analysis","fixed-point","migration","fragmentation"],"layer":"Core Formalism","dependencies":["LEAD_Q16_16_MIGRATION_GUIDE.md","LEAD_Q16_16_MIGRATION_PLAN.md"],"summary":"Analysis of Q16_16 type fragmentation: 6 distinct definitions across ~468 files. Identifies semantic differences (signed vs unsigned), documents completed work (PhysicsScalarBridge, demo), and outlines three-phase migration plan with risk mitigation."} +{"file":"adversarial-review-self-adapting-fabric.md","title":"Adversarial Review: Self-Adapting Compute Fabric","concepts":[{"name":"Self-adapting compute fabric","description":"Vision for self-healing distributed compute fabric. Review finds 90% aspirational, no MVP, premature abstraction.","type":"architecture"},{"name":"Bootstrap agent critique","description":"Single-shot bootstrap agent fails because nodes reboot, tokens expire, hardware changes, nftables reset. Needs watchdog companion.","type":"invariant"},{"name":"Adaptive scheduler critique","description":"Ray doesn't support dynamic dispatch to specific nodes at call time. Must use resource-constrained @ray.remote with tier fallback.","type":"invariant"},{"name":"FrameDispatcher critique","description":"Currently synchronous Python function on single machine, not distributed. Routes through dict lookup, not scheduler.","type":"invariant"},{"name":"Edge Caddy SPOF","description":"No SSH access to racknerd, kubelet breaks on restart, manually maintained config. Edge should be cattle, not pet.","type":"invariant"},{"name":"Capability Registry SPOF","description":"Trailbase as single database for node registration is single point of failure. k3s API labels already have this data.","type":"invariant"},{"name":"Ray Head HA","description":"Ray head pinned to steamdeck via nodeSelector. Single node failure kills all in-flight tasks and scheduler.","type":"invariant"},{"name":"NodePort allocation","description":"20+ manually assigned NodePort services with no central allocation, collision-prone. Need central YAML, Traefik Ingress, or admission webhook.","type":"invariant"},{"name":"BATCH/WASM tiers","description":"GitHub Actions has no inbound networking; Cloudflare Workers can't do GPU compute. Neither is ready for the proposed workflow.","type":"invariant"},{"name":"Real MVP","description":"Three files: node_watchdog.py (systemd timer), nodepool_watcher.py (k3s Deployment), port-registry.sh (Caddy config). No new databases.","type":"recipe"}],"tags":["adversarial-review","k3s","Ray","distributed","infrastructure","SPOF","bootstrap","scheduler","edge"],"layer":"Infrastructure","dependencies":[],"summary":"Brutally honest adversarial review of a self-adapting compute fabric design. Identifies 10 issues: bootstrap agent needs watchdog, Ray doesn't support dynamic node dispatch, FrameDispatcher isn't distributed, edge Caddy is SPOF, capability registry is SPOF, Ray head has no HA, NodePorts are collision-prone, BATCH/WASM tiers are handwaved, no MVP exists. Proposes 3-file real MVP."} +{"file":"airtable_import_guide.md","title":"Airtable Import Guide for Compute Substrate Research Database","concepts":[{"name":"Compute substrate research database","description":"7-table Airtable database encoding compute substrate research from $10 embedded morphic field computers to EPYC fabric configurations.","type":"architecture"},{"name":"Hardware Substrates","description":"7 compute substrates: Physical Entropy, Harvested Cycles, Display Interface, Empirical Discovery, Coordination, Overkill. With cost/bandwidth/complexity metrics.","type":"primitive"},{"name":"Math Workloads","description":"7 mathematical workloads: Fractal Geometry, Cellular Automata, Game Theory, Soliton Fields, Sidon Sets, Topology. With optimal substrate mapping.","type":"primitive"},{"name":"Performance Metrics","description":"Operations/sec, bytes/sec, ops/$ ratios, power, latency, scalability, efficiency ratings per substrate-workload combination.","type":"primitive"},{"name":"Scaling Analysis","description":"Hardware class evolution from 6502 to EPYC SP5. Sweet spots: ARM1, Core 2, Pi 2W.","type":"primitive"},{"name":"Integration Patterns","description":"6 patterns combining multiple substrates for Embedded, Desktop, Server, Data Center, Research use cases.","type":"primitive"},{"name":"TOSLINK Entropy","description":"Physical optical imperfections as deterministic stochastic channel. Infinite ops/$.","type":"primitive"},{"name":"Spatiotemporal RAM","description":"1km+ fiber spool: light propagation delay = memory addressing. 5μs propagation = 5,000 temporal slots. Zero power storage.","type":"primitive"},{"name":"Menger sponge QR","description":"XOR, bit shifts, addition workload. Perfect for cheap hardware. Cache-friendly, embarrassingly parallel.","type":"algorithm"},{"name":"Distributed quine","description":"s_next(Node_i) = e(Node_j) across network. Communication costs: Λ_net = Λ_local + λ·d_torus.","type":"algorithm"}],"tags":["airtable","compute-substrate","hardware","FPGA","entropy","TOSLINK","spatiotemporal-RAM","Menger","performance","scaling"],"layer":"Mathematical Models","dependencies":[],"summary":"Import guide for an Airtable database encoding compute substrate research. 7 tables covering hardware substrates (TOSLINK entropy, USB-C SFP, PCIe idle cycles, HDMI TMDS abuse), math workloads, performance metrics, scaling analysis (6502 to EPYC), integration patterns, and optimal configurations. Sweet spot: $10-200 range."} +{"file":"woo.md","title":"Claude Code Session Log — Research Stack Setup & Strategy","concepts":[{"name":"ContextStream setup","description":"Fixing half-installed ContextStream: hooks were wired but MCP server never registered with Claude Code. Registered at user scope.","type":"recipe"},{"name":"MCP server registration","description":"Registered lean-lsp, nixos, k8s, arxiv, wolfram-alpha MCP servers. All connected after restart.","type":"recipe"},{"name":"Tiered proof workflow","description":"4-tier attack: Tier 1 tight interactive loop (lean-lsp), Tier 2 cheap breadth (neon Gemma), Tier 3 parallel verification (Ray), Tier 4 frontier tracking (CronJob + Prometheus).","type":"pattern"},{"name":"Nutbreaker prompts","description":"4 single-shot Tier-1 prompts written: SSMS L1 Contraction, AdjugateMatrix cofactor_identity, BraidSpherionBridge repair, BurgersBridge axiom discharge.","type":"recipe"},{"name":"Rainbow Raccoon Compiler (RRC)","description":"Admissibility/receipt gate: every projection gets ACCEPT/HOLD/QUARANTINE backed by payload identity, type witness, residual policy, replay evidence.","type":"gate"},{"name":"RRC corpus status","description":"33,890 equations tagged, mostly LogogramProjection (27,661). 33,885 of 33,890 missing receipt_density axis — corpus stuck at HOLD.","type":"invariant"},{"name":"Erdős #329 synthesis","description":"How dense can an infinite Sidon set be? Erdős–Turán: ≤ 1. Open as of 2026. Ruzsa/Cilleruelo √2−1 exponent is current frontier.","type":"theorem"},{"name":"Singer difference sets","description":"Finite projective geometry construction generating Sidon sets from short programs. Pilatte 2023 solution to Erdős–Sárközy–Sós runs through Singer.","type":"theorem"},{"name":"DualQuaternion braid state","description":"8D structure (two quaternions, 8 Q16_16 components) at BurgersPDE.lean:179. The 0D genus mapping. Energy non-negativity proven.","type":"definition"},{"name":"Burgers→0D braid isomorphism","description":"Proven: any Burgers state maps to a DualQuaternion, the 0D genus acts as fixed point. Central DST theorem in action.","type":"theorem"},{"name":"16D manifold decomposition","description":"V₁₆(k) = q_void(k) ⊕ q_orbit(k) ⊕ q_braid(k) ⊕ η_observer(k). Projects to 4D active chart O₄ = (field, shear, packet, spectral).","type":"architecture"},{"name":"Dimensional Shock Trim (DST)","description":"M₁₆ → A₀ + residual. The 12 remaining dimensions are receipted (Underverse), not discarded.","type":"algorithm"},{"name":"Paint Physics ↔ Linear Algebra","description":"Kubelka-Munk pigment mixing isomorphic to sphere packing in 512-dimensional space. K/S absorption ratio = per-MAC truncation error.","type":"bridge"},{"name":"Kolmogorov 4/5 law ↔ Color gate","description":"Turbulence cascade maps to spectral color classification. Fully developed cascade → Red, Intermittent → Green, Laminar → Blue.","type":"bridge"},{"name":"Jarzynski Equality as gate","description":"Fluctuation theorem from nonequilibrium thermodynamics used as computation admission gate. gateCondition(residual, threshold).","type":"gate"},{"name":"English Word Bonding","description":"CAGE, BRIDGE, CHAIN, SCAR, SALT, RING are formal operators with typed signatures. English morphology becomes a router DSL.","type":"definition"},{"name":"HDMI soliton compute","description":"TMDS lanes repurposed as soliton field parameter transport. Pixel clock = dimensional index. DDC/I2C = ZK proof verification.","type":"primitive"},{"name":"Cancer as compression failure","description":"Oncogene activation = lossy compression, p53 mutation = checksum failure, telomere erosion = broken EOF handling.","type":"bridge"},{"name":"Imaginary Semantic Time (IST)","description":"Staged sequence of strengthening systems addressing Chaitin's incompleteness. Semantic axis indexes certification stages.","type":"definition"},{"name":"Semantic mass numbers","description":"Observer-independent manifold coordinate. Observation = residue class (semantic mod ℓ) at native resolution. No privileged ℓ.","type":"definition"},{"name":"Compression razor","description":"If you can't compress it, you're either doing it wrong or there's something you're not seeing. Valid for math (short channel), bounded by Chaitin for arbitrary strings.","type":"invariant"},{"name":"Framework assessment","description":"Strengths: antibodies (RRC fail-closed), defensible core (transport of structure), tiered prover pipeline. Concerns: axiom budget inconsistency, names claim more than theorems prove, no external interface.","type":"invariant"},{"name":"Research execution plan","description":"5 tracks: A-Substrate (infrastructure), B-Formal debt (nutbreakers), C-Erdős #329 ladder, D-Metamathematical grounding, E-External interface.","type":"recipe"}],"tags":["session-log","RRC","Sidon","Singer","Erdos","DualQuaternion","Burgers","16D","compression","Chaitin","semantic-mass","MCP","ContextStream","nutbreaker","adversarial-review"],"layer":"Documentation","dependencies":["AGENTS.md","ARCHITECTURE.md"],"summary":"Extended Claude Code session log covering ContextStream MCP setup, nutbreaker prompt writing (4 Tier-1 proof targets), Rainbow Raccoon Compiler corpus analysis (33,890 equations, 33,885 at HOLD), Erdős #329 synthesis program, 16D manifold decomposition with DualQuaternion braid state, cross-domain isomorphisms (paint physics, Kolmogorov, cancer, English words, HDMI), Chaitin's incompleteness addressed via imaginary semantic time and semantic mass numbers, framework assessment, and 5-track research execution plan."} +{"file":"6-Documentation/README.md","title":"6-Documentation","concepts":[{"name":"OTOM","description":"Ordered Transformation & Orchestration Model","type":"definition"},{"name":"PIST","description":"Perfectly Imperfect Square Theory","type":"definition"},{"name":"ENE","description":"Endless Node Edges - self-replicating consensus mesh","type":"definition"},{"name":"AMMR","description":"Algebraic Merkle Mountain Range","type":"definition"},{"name":"FAMM","description":"Frustration-Aware Manifold Mesh","type":"definition"},{"name":"SVQF","description":"Spherical Quaternion Vector Field","type":"definition"}],"tags":["documentation","registry","acronyms","architecture"],"layer":"6-Documentation","dependencies":[],"summary":"Top-level documentation directory README. Registers acronyms (OTOM, PIST, ENE, AMMR, FAMM, SVQF, SLUQ, TTM) and maps source papers to destinations."} +{"file":"6-Documentation/ELEVATOR_PITCH.md","title":"Elevator Pitch: Sovereign Stack","concepts":[{"name":"Integer-only compute","description":"Achieving structural data routing using only whole numbers instead of floating-point","type":"primitive"},{"name":"FPGA deployment","description":"Running models on cheap FPGA chips instead of GPUs for near-zero power","type":"architecture"},{"name":"Lean 4 formal verification","description":"3500+ machine-verified proofs ensuring integer engine stability","type":"gate"}],"tags":["elevator-pitch","FPGA","Lean","fixed-point","energy-efficiency"],"layer":"6-Documentation","dependencies":["FixedPoint","Lean 4"],"summary":"Concise pitch: the stack replaces floating-point GPU math with proven-correct integer arithmetic, enabling FPGA deployment at pocket-calculator power levels."} +{"file":"6-Documentation/EXPLANATION_FOR_HUMANS.md","title":"The Sovereign Stack: Explanation for Humans","concepts":[{"name":"Pure Integer Routing","description":"System routes data, compresses, and evaluates logic using only +,-,*,/","type":"primitive"},{"name":"Topological State Machine","description":"A graph router that determines where data goes next","type":"definition"},{"name":"Manifold State Point","description":"An integer index tracking position in the state space","type":"definition"},{"name":"Q16.16 Fixed Point","description":"Fast math trick for fractions without floating-point","type":"definition"},{"name":"Betti Numbers","description":"Loop counter detecting if data router gets stuck in circles","type":"definition"},{"name":"Landauer Compression","description":"Energy cost of erasing memory","type":"definition"}],"tags":["explanation","glossary","Q16_16","fixed-point","accessible"],"layer":"6-Documentation","dependencies":["FixedPoint","Bind"],"summary":"Plain-language translation of academic terms. Maps Topological State Machine to graph router, Manifold State Point to index, Q16.16 to fast fraction math, Betti numbers to loop counters."} +{"file":"6-Documentation/PROJECT_MAP.md","title":"Research Stack Project Map","concepts":[{"name":"bind primitive","description":"Universal lawful translation primitive with cost functions","type":"primitive"},{"name":"Q16_16 fixed point","description":"Hardware-native arithmetic with zero Float in compute path","type":"primitive"},{"name":"PBACS","description":"Canonical state constitution with prohibited-state predicates","type":"definition"},{"name":"AVM ISA","description":"Adaptive Virtual Machine instruction set architecture","type":"architecture"},{"name":"RRC alignment classifier","description":"Rainbow Raccoon Compiler alignment gate","type":"gate"},{"name":"SieveLemmas","description":"Coprime sieve observer with CRT reconstruction","type":"theorem"},{"name":"InteractionGraphSidon","description":"Weak-axis projections with Sidon witness","type":"theorem"},{"name":"SDPVerify","description":"SDP certificate verification engine","type":"tool"}],"tags":["project-map","architecture","Lean","formal-verification"],"layer":"6-Documentation","dependencies":["Bind.lean","FixedPoint.lean","Canon.lean","AVMIsa/Emit.lean","RRC/Emit.lean"],"summary":"High-level pointer from concepts to canonical files. Maps core formalism modules, infrastructure shims, documentation maps, and build gate (3314 jobs, 0 errors)."} +{"file":"6-Documentation/INFRASTRUCTURE.md","title":"Research Stack Infrastructure","concepts":[{"name":"Tailscale Mesh Network","description":"Self-hosted bare metal nodes connected via Tailscale VPN","type":"architecture"},{"name":"k3s Cluster","description":"Lightweight Kubernetes cluster (v1.35.4+k3s1) with Flannel CNI","type":"architecture"},{"name":"Blitter6502OISC","description":"SUBLEQ CPU on FPGA with 4K memory and UART","type":"architecture"},{"name":"Q16 LUT Core","description":"Hardware fixed-point arithmetic unit, 8 ops, 2-stage pipeline","type":"primitive"},{"name":"VCN Compute Substrate","description":"Video-as-compute using GPU hardware encoders for fixed-point vector processing","type":"architecture"},{"name":"Ollama Inference","description":"Local LLM inference serving deepseek-coder-v2:16b","type":"tool"},{"name":"Authentik OIDC","description":"SSO authentication for web endpoints","type":"protocol"},{"name":"Caddy TLS","description":"Porkbun DNS-01 wildcard certificates","type":"protocol"}],"tags":["infrastructure","k3s","FPGA","GPU","Tailscale","Ollama","Authentik"],"layer":"4-Infrastructure","dependencies":["Tailscale","k3s","Tang Nano 9K"],"summary":"Complete infrastructure documentation: 5-node Tailscale mesh, k3s cluster with 7 namespaces, Tang Nano 9K FPGA (Blitter6502OISC), GPU compute via VCN, Ollama serving, and API services."} +{"file":"6-Documentation/FPGA_PROGRAMMING_GUIDE.md","title":"FPGA Programming Guide — SUBLEQ on the Blitter","concepts":[{"name":"SUBLEQ","description":"Subtract and Branch if Less-than-or-Equal to Zero - one instruction set computer","type":"algorithm"},{"name":"Q16 LUT","description":"Hardware fixed-point arithmetic unit with 8 opcodes at 74ns latency","type":"primitive"},{"name":"Voltage Controller","description":"BRAM access mode manager (STORE/COMPUTE/APPROX/MORPHIC)","type":"architecture"},{"name":"Scale Space BRAM","description":"4 Gaussian kernel banks (σ=0.25/0.50/0.75/1.00)","type":"architecture"},{"name":"HiGHS Pivot","description":"3-stage simplex pipeline for hardware LP solving","type":"architecture"},{"name":"UART beacon","description":"Serial communication at 115384 baud for FPGA I/O","type":"protocol"}],"tags":["FPGA","SUBLEQ","Q16_16","Tang-Nano-9K","hardware","blitter"],"layer":"4-Infrastructure","dependencies":["Blitter6502OISC","Q16_16"],"summary":"Complete programming guide for the SUBLEQ CPU on Tang Nano 9K. Covers instruction format, memory map, Q16 LUT operations, voltage controller, scale space, HiGHS pivot registers, and example programs."} +{"file":"6-Documentation/API_DOCS.md","title":"API Documentation — Research Stack Services","concepts":[{"name":"Credential Server","description":"Token issuance and validation service","type":"tool"},{"name":"Registry API","description":"Artifact registration with type/since/limit filtering","type":"tool"},{"name":"Jobs API","description":"Lean build job management with SSE log streaming","type":"tool"},{"name":"Blobs API","description":"Binary blob storage with SHA-256 verification","type":"tool"},{"name":"Authentik OIDC","description":"OpenID Connect provider for SSO","type":"protocol"}],"tags":["API","REST","k3s","authentication","services"],"layer":"6-Documentation","dependencies":["Authentik","k3s"],"summary":"Full REST API documentation for Credential Server, Registry API, Jobs API, and Blobs API. Includes Authentik OIDC configuration, rate limits, and response codes."} +{"file":"6-Documentation/DISASTER_RECOVERY.md","title":"Disaster Recovery — Research Stack","concepts":[{"name":"etcd snapshot","description":"k3s cluster state backup via etcd-snapshot save","type":"recipe"},{"name":"FPGA bitstream recovery","description":"Rebuild and re-flash from git repo source","type":"recipe"},{"name":"age key backup","description":"sops-nix encryption key backup and restore","type":"recipe"},{"name":"Recovery priority order","description":"Tailscale → Git → age keys → k3s → DNS → FPGA → Services","type":"recipe"}],"tags":["disaster-recovery","backup","k3s","FPGA","Tailscale","sops"],"layer":"6-Documentation","dependencies":["k3s","Tailscale","sops-nix"],"summary":"Backup and restore procedures for all stack components. Defines recovery priority order (Tailscale first, then Git, age keys, k3s, DNS, FPGA, services) with full system checklist."} +{"file":"6-Documentation/RUNBOOK.md","title":"Ops Runbook — Research Stack","concepts":[{"name":"k3s cluster ops","description":"Start/stop, health check, restart pods, view logs","type":"recipe"},{"name":"FPGA flash procedure","description":"Build, flash via USB-JTAG, verify LEDs and UART","type":"recipe"},{"name":"Tailscale funnel","description":"Edge node funnel routing to Traefik NodePort","type":"recipe"},{"name":"GPU monitoring","description":"nvidia-smi checks and Ollama model management","type":"recipe"},{"name":"Escalation matrix","description":"First response → escalation path for each failure type","type":"recipe"}],"tags":["runbook","operations","k3s","FPGA","Tailscale","GPU","DNS"],"layer":"6-Documentation","dependencies":["k3s","Tailscale","Tang Nano 9K"],"summary":"Quick-reference operational procedures for k3s, FPGA, Tailscale, GPU, and DNS. Includes common failures (CrashLoopBackOff, FPGA unresponsive, Tailscale tunnel down) and escalation matrix."} +{"file":"6-Documentation/16D_YANG_COLUMN_RIGOR.md","title":"Rigorization of the 16D Rotation / Yang Column Formalism","concepts":[{"name":"Kähler vector space","description":"ℝ¹⁶ as ℂ⁸ with almost-complex structure J, metric g, symplectic form ω","type":"definition"},{"name":"Two-out-of-three theorem","description":"O(16) ∩ Sp(16,ℝ) ∩ GL(8,ℂ) = U(8); any two of {g,ω,J} imply the third","type":"theorem"},{"name":"Golden spiral map","description":"S(z) = c + φ⁻¹e^{iθ_g}(z−c) - simultaneous contraction and 16D rotation","type":"algorithm"},{"name":"Yang column","description":"U(1) vortex/flux tube with quantized winding number","type":"definition"},{"name":"Cauchy-Riemann ⟺ J-equivariance","description":"Holomorphic motion and Kähler compatibility are the same condition","type":"theorem"},{"name":"Even unimodular lattices","description":"E₈⊕E₈ and D₁₆⁺ as the two 16D even unimodular lattices","type":"definition"},{"name":"Moran equation","description":"N·(φ⁻¹)^D = 1 gives attractor dimension D = ln N / ln φ","type":"theorem"},{"name":"Wilson plaquette","description":"Integer-native lattice gauge theory: F_p = Σ_{e∈∂p} A_e","type":"primitive"}],"tags":["16D","Kähler","Yang-column","golden-spiral","lattice","topology","formal-math"],"layer":"0-Core-Formalism","dependencies":["FixedPoint","Q16_16","PhiNUVMAP","Goxel16D","Law15"],"summary":"Rigorous mathematical foundation for 16D rotation: Kähler structure, golden spiral map with φ²·ULP drift bound, Yang column as quantized flux tube, Cauchy-Riemann equivalence, even unimodular lattices (E₈⊕E₈, D₁₆⁺), and chaos-game dimension budget."} +{"file":"6-Documentation/calculator_plain_math.md","title":"Calculator-Plain Math: The Entire Research Stack","concepts":[{"name":"Nibble Switch","description":"4-bit transition atom: nibble = control * 4 + domain","type":"primitive"},{"name":"Manifold State Point","description":"Locus update with curvature EMA: new = 0.7*old + 0.3*target","type":"primitive"},{"name":"Shannon Entropy","description":"H = Σ -p*log2(p) measuring unpredictability","type":"algorithm"},{"name":"Power-Law Fit","description":"Zipf exponent: alpha = 1 + N / sum(log(rank/count))","type":"algorithm"},{"name":"Hutter Prize Score","description":"C = (0.4*C_comp + 0.35*C_phys + 0.25*C_geom) * (S/(G+F))","type":"algorithm"},{"name":"Betti Numbers","description":"Topological invariants: β₀ connected components, β₁ loops, χ = V-E+F","type":"definition"}],"tags":["math","accessible","calculator","compression","entropy","topology"],"layer":"6-Documentation","dependencies":[],"summary":"Every equation in the project reduced to +,-,*,/,^,log. Covers Nibble Switch, Manifold State Point, Shannon Entropy, Power-Law Fit, Hutter Score, Grand Compression Equation, Betti Numbers, and Cache Statistics. A high school student could verify every number."} +{"file":"6-Documentation/conformance/iso_26262_hara_fmea.md","title":"ISO 26262 Safety Case: Q16_16 Fixed-Point Core & TSM","concepts":[{"name":"HARA","description":"Hazard Analysis and Risk Assessment for Q16_16 arithmetic subsystem","type":"gate"},{"name":"FMEA","description":"Failure Mode and Effects Analysis at software/hardware boundary","type":"gate"},{"name":"ASIL D","description":"Highest automotive safety integrity level classification","type":"definition"},{"name":"TSM","description":"Topological Safety Monitor with Builder/Warden/Judge clock domains","type":"architecture"},{"name":"Arithmetic Saturation Overflow","description":"HAZ-01: Results exceed bounds causing step discontinuities","type":"definition"},{"name":"Zero-Denominator Divergence","description":"HAZ-02: Division by zero/near-zero in Cramer solver","type":"definition"},{"name":"TSM Domain Desynchronization","description":"HAZ-03: Clock domain misalignment causing stale feedback","type":"definition"}],"tags":["ISO-26262","safety","ASIL-D","HARA","FMEA","Q16_16","TSM"],"layer":"6-Documentation","dependencies":["FixedPoint","TSM.lean","Cramer4D"],"summary":"Automotive-grade safety case (ASIL D) for Q16_16 and TSM. Identifies 3 hazards (arithmetic overflow, zero-denominator, clock desynthesis), provides FMEA with diagnostic coverage, and links to Lean formal mitigations."} +{"file":"6-Documentation/invention_record/INVENTION_ARCHITECTURE.md","title":"RGFlow: Event-Genome Lawfulness Filter","concepts":[{"name":"RGFlow Filter","description":"Formal informatic membrane isolating scale-stable mathematical structure from noise","type":"architecture"},{"name":"Unified Adaptation Engine","description":"6D quantized manifold evaluating informatic genome fitness","type":"architecture"},{"name":"AVMR Spectral Audit","description":"Genetic-code-derived mapping detecting mathematical constants via signature density","type":"algorithm"},{"name":"Scale-Persistence Predicate","description":"RGFlow operator requiring information stability across abstraction steps","type":"gate"},{"name":"Blind Detection Theorem","description":"Formal proof of rejection of all non-scale-coherent phases","type":"theorem"}],"tags":["invention","RGFlow","information-theory","formal-verification","spectral"],"layer":"6-Documentation","dependencies":["KillerCriterion.lean","SabotagePrevention.lean"],"summary":"Invention record for RGFlow filter: a formal membrane that isolates scale-stable mathematical structure from cryptographic noise. Tested blind on 1M-bit stream with zero false positives. Lean 4 formal proof included."} +{"file":"6-Documentation/security/dependabot-alert-exceptions-2026-05-12.md","title":"Dependabot Alert Exceptions - 2026-05-12","concepts":[{"name":"Transitive dependency exceptions","description":"Blocked upstream constraints preventing direct dependency updates","type":"receipt"},{"name":"ml-dsa exception","description":"servo-script requires ml-dsa ^0.0.4; patched 0.1.0-rc.5 incompatible","type":"receipt"},{"name":"glib exception","description":"Tauri/GTK stack pins glib v0.18.5; direct 0.20 update rejected","type":"receipt"},{"name":"thrift exception","description":"parquet depends on thrift v0.17.0 with no patched release","type":"receipt"}],"tags":["security","dependabot","Cargo","transitive-deps","exceptions"],"layer":"6-Documentation","dependencies":["servo-fetch","Cargo.lock"],"summary":"Ledger of remaining Dependabot alerts after direct dependency updates. 5 tracked transitive exceptions (ml-dsa, rand, glib, thrift) with blocker chains, local mitigations, and unblock conditions."} +{"file":"6-Documentation/reviews/ene-rds-rust-workspace-review-2026-05-19.md","title":"ENE-RDS Rust Workspace — Multi-Agent Review Report","concepts":[{"name":"ene-rds-core","description":"Rust crate for RDS database operations with TLS and Q16_16 arithmetic","type":"tool"},{"name":"ene-node","description":"Rust crate for distributed ENE node with UDP gossip and HMAC-SHA256","type":"tool"},{"name":"Hash-chain receipts","description":"SHA-256 receipt chain with parent links for auditability","type":"receipt"},{"name":"2/3 majority consensus","description":"BFT consensus threshold: (total * 2) / 3","type":"protocol"}],"tags":["review","Rust","ENE","consensus","security","Q16_16"],"layer":"4-Infrastructure","dependencies":["ene-rds","ene-node","Q16_16"],"summary":"Multi-agent review of 8-crate Rust workspace. Build PASS, Security CONDITIONAL PASS (TLS + HMAC gossip fixed), Correctness PASS WITH NOTES, Documentation PASS. Zero unsafe blocks, Q16_16 arithmetic correct, hash-chain receipts verified."} +{"file":"6-Documentation/docs/specs/SilverSight_Spec.md","title":"SilverSight Specification","concepts":[{"name":"SilverSight","description":"Clean-slate successor to Research Stack: substrate-agnostic compute fabric","type":"architecture"},{"name":"Schema/Layout/WireFormat","description":"Three-layer separation: schema defines size, layout defines encoding, WireFormat certifies roundtrip","type":"definition"},{"name":"DynamicCanal","description":"Physical instantiation abstraction (1-Wire, PCIe, DRAM, JSON)","type":"architecture"},{"name":"Claim-state ladder","description":"BEAUTIFUL_PROVISIONAL → CALIBRATED_ENGINEERING_DELTA → REVIEWED → VERIFIED","type":"gate"}],"tags":["SilverSight","architecture","YaFF","Lean","clean-slate","substrate-agnostic"],"layer":"0-Core-Formalism","dependencies":["FixedPoint","Bind","AVMIsa"],"summary":"Clean-slate successor keeping formally verified concepts while discarding duplication. Every concept has a stable ID, Lean definition, and receipt. All decisions in Lean; Python/Rust/Verilog are extraction targets only."} +{"file":"6-Documentation/docs/specs/virtio_net_compute_fabric_spec.md","title":"Virtio-Net DMA Compute Fabric & Packet-as-Computation (PIST)","concepts":[{"name":"PistPacket","description":"Compute frame with Ethernet header, computation_id, coordinate_path, witness_hash, and Q16_16 payload","type":"definition"},{"name":"Toeplitz RSS","description":"NIC hardware RSS exploited as binary matrix-vector convolution at line rate","type":"algorithm"},{"name":"Packet-as-computation","description":"Ethernet packets are computation state capsules, not serialized payloads","type":"architecture"},{"name":"Coordinate path","description":"QuadTree addressing for spatial partitioning encoded in packet header","type":"definition"}],"tags":["virtio-net","DMA","PIST","networking","hardware-offload","Toeplitz"],"layer":"4-Infrastructure","dependencies":["Q16_16","PIST"],"summary":"Treats virtualized Ethernet as high-throughput, zero-copy DMA computation backplane. Maps NIC ASICs (RSS, TSO, FCS) to linear algebra operators. Packets carry computation state, not serialized payloads."} +{"file":"6-Documentation/docs/specs/vectorless_technical_review_response.md","title":"Vectorless Spatial Hash Architecture - Technical Review Response","concepts":[{"name":"Spatial hash codec","description":"Morton code (Z-order) preserving semantic locality for vectorless storage","type":"architecture"},{"name":"Voltage mode classifier","description":"Lean-owned decision logic with Python wrapper only","type":"gate"},{"name":"Q0_16/Q16_16 internal arithmetic","description":"All internal arithmetic uses fixed-point, no Float in compute paths","type":"primitive"}],"tags":["spatial-hash","review","Lean","fixed-point","Morton-code"],"layer":"4-Infrastructure","dependencies":["Q16_16","SpatialHashCodec"],"summary":"Technical review corrections: moved decision logic from Python to Lean, fixed Lean/Python semantic drift, confirmed Morton code locality, enforced Q0_16/Q16_16 internal arithmetic."} +{"file":"6-Documentation/docs/specs/unified_manifold_blit_equation.md","title":"Unified Manifold-Blit Equation","concepts":[{"name":"Manifold-Blit Equation","description":"M_{k+1}(x) = Quant_LLM(J_DAG[M_k ⊕ (Ψ_q ⊗ R_RT(f,ε_TCP))])","type":"definition"},{"name":"Blitter Operator","description":"Hardware-accelerated bitwise accumulation (discrete Picard integral)","type":"primitive"},{"name":"DAG-LUT","description":"Hash check + teleport short-circuit for solved states","type":"primitive"},{"name":"Quantum Walk Amplitude","description":"Superposition of potential paths for quadratic convergence","type":"algorithm"}],"tags":["manifold","blitter","quantum","GPU","Picard-iteration","DAG-LUT"],"layer":"0-Core-Formalism","dependencies":["AVMR.lean","Blitter6502OISC"],"summary":"Unified equation combining DAG-LUT short-circuiting, quantum sampling, drift correction, and blitter accumulation. Claims O(1) complexity (speed of a Bit-Blit) vs traditional O(n²) Picard iteration."} +{"file":"6-Documentation/docs/specs/tag-addressable-compute-fabric.md","title":"Tag-Addressable Compute Fabric (TACF)","concepts":[{"name":"Tag rings","description":"6 channels (STRAND, CROSSING, PIST, LUPINE, VAAPI, FLAC) for work dispatch","type":"architecture"},{"name":"Copy-if pattern","description":"Content-addressed Ray ObjectRef: same payload = same hash = no copy","type":"pattern"},{"name":"HEP as LUT","description":"Hardware capability as tag subscription table, not device tree","type":"pattern"},{"name":"Node self-selection","description":"Nodes subscribe to tags they can handle; no scheduler or registry","type":"architecture"}],"tags":["TACF","distributed","compute-fabric","tags","Ray","virtio"],"layer":"4-Infrastructure","dependencies":["Ray","Tailscale","FrameDispatcher"],"summary":"Ground-up distributed compute design: work published to tag rings, nodes self-select based on capability. 6 tags, 5 primitives (Tag, Subscription, Descriptor, Ring, LUT). No scheduler, no registry, no health monitor."} +{"file":"6-Documentation/docs/specs/self-adapting-compute-fabric.md","title":"Self-Adapting Compute Fabric","concepts":[{"name":"Node Bootstrap Agent","description":"One-shot node initialization: tailscale_up → detect_hardware → build_labels → register → join_k3s","type":"recipe"},{"name":"Capability Registry","description":"Node capability auto-detection and k3s label generation","type":"architecture"},{"name":"Adaptive Scheduler","description":"Orchestrator engine routing based on node capabilities","type":"architecture"}],"tags":["self-adapting","k3s","Tailscale","auto-discovery","distributed"],"layer":"4-Infrastructure","dependencies":["k3s","Tailscale","Ray"],"summary":"Design for automatic adaptation to node changes (churn, scaling, degradation). Node Bootstrap Agent auto-detects hardware, generates k3s labels, and joins cluster. Orchestrator routes based on capabilities."} +{"file":"6-Documentation/docs/specs/sdta_spec.md","title":"Semantic Degenerate Tensor Adapter (SDTA) Specification","concepts":[{"name":"SDTA","description":"Structural reformulation of NP-hard search as deformation theory over ZIM eigensolid","type":"architecture"},{"name":"Portability coefficient η","description":"‖Π_D A Π_D†‖_F / ‖A‖_F measuring problem structure in degenerate subspace","type":"definition"},{"name":"DegenerateChart","description":"Chart where eigensolid is degenerate (Laplace instead of Helmholtz)","type":"definition"},{"name":"SMN","description":"Semantic Mass Number measuring structural load","type":"definition"}],"tags":["SDTA","NP-hard","tensor","deformation","eigensolid","complexity"],"layer":"0-Core-Formalism","dependencies":["Q16_16","FixedPoint"],"summary":"Reformulates NP-hard search as deformation theory. Key insight: 'impossible' ≠ ∞, it means NaN (coordinate failure). Portability coefficient η measures how much structure survives degenerate projection."} +{"file":"6-Documentation/docs/specs/quantization.md","title":"Quantization Specification","concepts":[{"name":"Ternary weight quantization","description":"RoundClip(W/(γ+ε), -1, 1) → {-1, 0, 1} for 10× memory reduction","type":"algorithm"},{"name":"BitLinear activation","description":"Clip(x × Q_b/(η+ε)) preserving dynamic range","type":"algorithm"},{"name":"MLGRU recurrence","description":"h_t = f_t ⊙ h_{t-1} + (1-f_t) ⊙ c_t - no matrix multiplication","type":"algorithm"},{"name":"Ternary packing","description":"2 bits per weight, 4 weights per byte, ~10× reduction with overhead","type":"primitive"}],"tags":["quantization","ternary","neural-network","WebGPU","MLGRU","memory-reduction"],"layer":"0-Core-Formalism","dependencies":["Q16_16","FixedPoint"],"summary":"Ternary weight quantization achieving 10× memory reduction vs FP16. Includes BitLinear activation scaling and MLGRU (MatMul-free) recurrence reducing computation from O(d²) to O(d)."} +{"file":"6-Documentation/docs/specs/lonely_runner_betti_mapping.md","title":"Lonely Runner Conjecture — Betti-2 Topological Obstruction Mapping","concepts":[{"name":"Lonely Runner Conjecture","description":"For k runners with distinct speeds, ∃t where min_i dist(v_i*t, 0) ≥ 1/(k+1)","type":"theorem"},{"name":"Coverage density Φ","description":"Σ 1_{B(v_i*t,δ)}(θ) measuring runner illumination at angle θ","type":"definition"},{"name":"Scar region M_t","description":"Uncovered set where Φ(t,θ) = 0 (loneliness field)","type":"definition"},{"name":"NK-Hodge-FAMM mapping","description":"Isomorphism between lonely runner structure and FAMM components","type":"theorem"}],"tags":["lonely-runner","Betti","topology","FAMM","conjecture","NK-Hodge"],"layer":"0-Core-Formalism","dependencies":["FAMM","Betti"],"summary":"Maps the Lonely Runner Conjecture to NK-Hodge-FAMM topological obstruction framework. Establishes isomorphism: runner speeds ↔ velocity field, coverage density ↔ photon field, scar ↔ loneliness. Does not prove the conjecture."} +{"file":"6-Documentation/docs/specs/cole_hopf_vorticity_resolution.md","title":"Cole-Hopf + Vorticity Tension: Rigorous Resolution","concepts":[{"name":"Cole-Hopf transformation","description":"u = -2ν₀·∇(ln Φ) mapping velocity to heat equation","type":"theorem"},{"name":"Vorticity tension","description":"Cole-Hopf velocity is irrotational (∇×u=0) yet NS requires ω≠0","type":"definition"},{"name":"Hodge decomposition resolution","description":"Full state is DualQuaternion Q=(Q₁,Q₂)∈ℝ⁸, not just (u,Φ)","type":"theorem"},{"name":"DualQuaternion","description":"Q₁×Q₂ = ℝ⁴×ℝ⁴ bridging Burgers PDE and braid algebra","type":"definition"}],"tags":["Burgers","Cole-Hopf","vorticity","Navier-Stokes","Hodge","DualQuaternion"],"layer":"0-Core-Formalism","dependencies":["ColeHopfTransform.lean","BurgersPDE.lean","BettiSwoosh"],"summary":"Resolves the apparent contradiction: Cole-Hopf makes velocity irrotational but NS needs vorticity. Resolution: full state is DualQuaternion in ℝ⁸, enabling Hodge decomposition with non-zero curl component."} +{"file":"6-Documentation/docs/specs/WitnessGrammar.md","title":"Witness Grammar Specification","concepts":[{"name":"Witness Grammar","description":"Finite symbolic source code recovered from a field (frequency, amplitude, phase, routing role)","type":"definition"},{"name":"Equation Sniffer","description":"Sniffs witness grammars (not raw data) to suggest routing","type":"algorithm"},{"name":"Market-Data Bridge","description":"Same pipeline applied to price/volume/news for behavioral operator classification","type":"architecture"}],"tags":["FNWH","witness-grammar","signal-processing","equation-sniffer","market-data"],"layer":"0-Core-Formalism","dependencies":["FNWH","MassNumberField","BHOCS"],"summary":"FNWH decompiles fields into witness grammars; Equation Sniffers compare grammars; market filter searches for shared behavioral operators. Defines the pipeline: raw field → FNWH peeling → WitnessGrammar → EquationSniffer → route."} +{"file":"6-Documentation/docs/specs/UNIVERSE_MODEL_ORBIT_ZOOM_PROTOCOL.md","title":"Universe Model Orbit-Zoom Protocol","concepts":[{"name":"Orbit View","description":"Classify problem at orbit height using unified equation as orbital map","type":"recipe"},{"name":"Zoom Ladder","description":"L0 Orbit → L1 Region → L2 State → L3 Derivation → L4 Receipt → L5 Gate","type":"gate"},{"name":"Torsional fluid baseline","description":"Assigned vs derived values distinction in torsional PIST","type":"definition"}],"tags":["universe-model","orbit-zoom","protocol","classification","receipt"],"layer":"6-Documentation","dependencies":["TorsionalPIST","UnifiedEquation"],"summary":"Navigation and receipt protocol for mapping problems into mathematical continents. Defines orbit view (classify at height) and zoom ladder (orbit → region → state → derivation → receipt → gate). Key distinction: assigned vs derived values."} +{"file":"6-Documentation/docs/specs/UNIFIED_TRANSPORT_ENCODING_SPEC.md","title":"Unified Transport Encoding Architecture","concepts":[{"name":"TMDS Lane Encoding","description":"Wire encoding over GPU display controller for DP/HDMI PHY","type":"protocol"},{"name":"VCN Video Encoding","description":"RDMA payload packed into H.265 video frames via hardware encode/decode","type":"protocol"},{"name":"Mesh Multi-Transport Routing","description":"Transport selection, fragmentation, multi-hop relay, fallback","type":"architecture"},{"name":"Unified envelope","description":"[tag(1)] + [transport header] + [RDMANetHeader(41)] + [payload]","type":"definition"}],"tags":["transport","encoding","HDMI","VCN","RDMA","mesh","multi-transport"],"layer":"4-Infrastructure","dependencies":["VCN","RDMANet","HDMI"],"summary":"Three-agent transport architecture: TMDS lane encoding (HDMI/DP PHY), VCN video encoding (Steam Deck MKV trick), and mesh multi-transport routing. Defines unified envelope wire format and fragment headers."} +{"file":"6-Documentation/docs/specs/UNIFIED_SIGNAL_ARCHITECTURE.md","title":"Unified Signal Architecture — DisplayPort × Audio × FPGA","concepts":[{"name":"NUVMAP Texel Stream","description":"PIST → Cayley V4 → braid/rope encoding across three hardware pathways","type":"architecture"},{"name":"DisplayPort 8K60","description":"33.18M texels/frame, 4 lanes carrying φ-phase, amplitude, tensor, witness","type":"architecture"},{"name":"PipeWire Audio","description":"192kHz/24-bit with TSM thermal (left), waveprobe (right), GCL delta (center)","type":"architecture"},{"name":"Unified Frame Sync","description":"DP VSYNC = audio buffer swap; VBLANK = TVI samples + audio FFT bins","type":"protocol"}],"tags":["signal","DisplayPort","audio","FPGA","texel","unified-architecture"],"layer":"4-Infrastructure","dependencies":["NUVMAP","PIST","TSM","Tang Nano 9K"],"summary":"Bridges DisplayPort 8K60, PipeWire 192kHz audio, and FPGA Tang Nano 9K into one texel state machine. DP lanes carry φ-phase/amplitude/tensor/witness; audio carries TSM thermal/waveprobe/GCL delta."} +{"file":"6-Documentation/docs/specs/Two_Layer_Kinetic_Sidon_Lattice_v0_1.md","title":"Two-Layer Kinetic Sidon Lattice v0.1","concepts":[{"name":"Kinetic lattice","description":"Layer 0: local motion, energy, phase-clock, update dynamics","type":"architecture"},{"name":"Sidon relational lattice","description":"Layer 1: pair signatures, anti-aliasing, addressable relational channels","type":"architecture"},{"name":"KineticToSidonFlow","description":"Kinetic flux produces Sidon pair signatures","type":"definition"},{"name":"SidonToKineticFlow","description":"Sidon addresses feed back into kinetic updates","type":"definition"}],"tags":["Sidon","lattice","kinetic","two-layer","anti-alias"],"layer":"0-Core-Formalism","dependencies":["Sidon","BraidStorm"],"summary":"Two coupled layers: kinetic (motion/energy) and Sidon (pair-address routing). Sidon sets flow between layers rather than being static. Gives motion with addressability, coherence without alias collapse."} +{"file":"6-Documentation/docs/specs/TOPOLOGICAL_BRAID_ADAPTER_SPEC.md","title":"Topological Braid Adapter Specification: Fibonacci Anyon Isomorphism","concepts":[{"name":"TopologicalBraidAdapter","description":"Mathematical bridge showing HydrogenicPhiTorsionBraid is isomorphic to Fibonacci Anyon System","type":"bridge"},{"name":"ColorRope → DualQuaternion","description":"CMYK channels map to dual quaternion coordinates (Zhang et al.)","type":"bridge"},{"name":"stairIndex → SLUG3State B_3 Word","description":"Crossing events map to braid group generators (Rouabah)","type":"bridge"},{"name":"tensegrityCoherent → Yang-Baxter","description":"Static equilibrium is isomorphic to Yang-Baxter equation","type":"bridge"},{"name":"Fibonacci Anyon System","description":"Topological quantum computing with anyon fusion and braiding","type":"definition"}],"tags":["braid","Fibonacci-anyon","topology","Yang-Baxter","DualQuaternion","quantum"],"layer":"0-Core-Formalism","dependencies":["HydrogenicPhiTorsionBraid","SLUG3","UnitQuaternion","GoldenRatioSeparation"],"summary":"Establishes 5 isomorphisms between Research Stack constructs and Fibonacci Anyon System: ColorRope↔DualQuaternion, stairIndex↔B₃ word, tensegrityCoherent↔Yang-Baxter, phi_pow↔braid matrices, Zeckendorf↔fusion tree."} +{"file":"6-Documentation/docs/specs/TINY_IP_CONTIKI_SURFACE_SPEC.md","title":"Tiny IP Surface Spec","concepts":[{"name":"Cooperative event loop","description":"Contiki-inspired cooperative processes for embedded nodes","type":"architecture"},{"name":"Fixed packet buffers","description":"96-byte MTU, 4 RX/TX buffers for constrained systems","type":"primitive"},{"name":"Omnitoken shell","description":"Shell layer moving admitted scalars between observer charts","type":"architecture"},{"name":"Admission before expansion","description":"Node refuses work before payload expansion if buffers full","type":"gate"}],"tags":["embedded","Contiki","Omnitoken","tiny-IP","constrained","shell"],"layer":"4-Infrastructure","dependencies":["Omnitoken","GCL"],"summary":"Contiki-inspired shell for embedded GCL/Omnitoken nodes. Cooperative event loop, fixed 96-byte MTU packet buffers, timers instead of blocking, admission before payload expansion."} +{"file":"6-Documentation/docs/specs/SYMBOLOGY_DERIVED_LOGOGRAM_DESIGN.md","title":"Symbology-Derived Logogram Design","concepts":[{"name":"Safe quarry rule","description":"Borrow compression principle, not protected symbol identity","type":"gate"},{"name":"Omindirection atoms","description":"Original atoms with explicit direction/chirality/phase/placement","type":"definition"},{"name":"Source classes","description":"9 inspiration classes: array langs, code-golf, math notation, shorthand, logographic, syllabaries, ancient, constructed, specialist","type":"definition"},{"name":"Borrowable principles","description":"denseOperator, modifierFamily, customCodePage, residualOmission, radicalComposition, etc.","type":"definition"}],"tags":["logogram","symbology","Omindirection","compression","design-grammar"],"layer":"6-Documentation","dependencies":["SymbologyBorrowing.lean","Omindirection"],"summary":"Defines safe extraction of compression principles from dense symbolic systems (APL, Hanzi, Hangul, Cuneiform, etc.) into original Omindirection atoms. Rule: borrow the compression principle, not the protected symbol identity."} +{"file":"6-Documentation/docs/specs/SSMS_nD_FUNCTIONAL_SPEC.md","title":"Functional Specification: SSMS-nD","concepts":[{"name":"SSMS-nD","description":"Scalar State Manifold Segmentation with variable dimension n∈[1,N_max]","type":"architecture"},{"name":"Sequential Lifting Operator","description":"L_{1D→n}: lifts 1D sequence into ℝ^n via learned coordinate chart","type":"algorithm"},{"name":"Dynamic n selection","description":"n = argmin[‖L_n(I) - Prompt(I)‖² + λ·Complexity(n')]","type":"algorithm"},{"name":"OISC architecture","description":"One Instruction Set Computer operating on dynamic n-manifold","type":"architecture"},{"name":"Holonomic constraints","description":"Linear via ACI, nonlinear via Lagrange multipliers in V_M","type":"definition"}],"tags":["SSMS","manifold","OISC","object-detection","variable-dimension"],"layer":"0-Core-Formalism","dependencies":["Q16_16","OISC"],"summary":"Promptable object detection on dynamic n-manifolds. Lifts 1D sequences into variable-dimensional spaces using ternary-quantized lifting operators. OISC architecture with holonomic constraints."} +{"file":"6-Documentation/docs/specs/SMN_SEMANTIC_MASS_NUMBERS.md","title":"SMN: Semantic Mass Numbers","concepts":[{"name":"SMN","description":"Semantic load carried by a symbol inside the stack (not atomic mass)","type":"definition"},{"name":"Semantic Mass pipeline","description":"semantic mass pressure → SMN score → optional Mass Number packet → admissibility receipt","type":"pipeline"},{"name":"SMN formula","description":"identity_load + relation_load + provenance_load + constraint_load + decision_load + repair_load","type":"definition"}],"tags":["SMN","semantic-mass","routing","admissibility"],"layer":"0-Core-Formalism","dependencies":["MassNumber","BHOCS"],"summary":"Defines Semantic Mass Number as a project-local semantic-load measure. SMN measures how heavy a symbol is inside the model. Pipeline: pressure → SMN score → Mass Number packet → admissibility receipt."} +{"file":"6-Documentation/docs/specs/SEMANTIC_ENGINE_BINDING_DERIVATION_WORKBENCH.md","title":"Semantic Engine Binding Derivation Workbench","concepts":[{"name":"Conceptual binding","description":"Relation making a semantic engine useful (document→chunk, chunk→embedding, etc.)","type":"definition"},{"name":"Research Stack re-derivation","description":"Every external binding rebuilt through bind, ConceptVector14, Address-First Search","type":"recipe"},{"name":"ENE plugin connector","description":"hotswap plugin: scan → plan → commit → verify","type":"recipe"}],"tags":["semantic-engine","binding","ENE","derivation","methodology"],"layer":"6-Documentation","dependencies":["bind","ConceptVector14","ENE"],"summary":"Design method for inspecting MIT-licensed semantic engines, identifying minimum conceptual bindings, and rederiving them from Research Stack primitives. Keeps the path clean: external engine → observation → local primitive → ENE plugin."} +{"file":"6-Documentation/docs/specs/Receipt_Core_Infrastructure_v0_1.md","title":"Receipt Core Infrastructure v0.1","concepts":[{"name":"Receipt infrastructure","description":"Safety and evidence-routing layer: executable → benchmark → adversarial-trial → candidate → proof receipt → reviewed","type":"architecture"},{"name":"Proof receipt gate","description":"CANDIDATE + non-proof evidence ≠ REVIEWED; CANDIDATE + proof receipt may promote","type":"gate"},{"name":"InvariantReceipt","description":"Lean receipt type preventing self-promotion","type":"definition"}],"tags":["receipt","infrastructure","OTOM","proof-gate","promotion"],"layer":"0-Core-Formalism","dependencies":["ReceiptCore.lean","OTOM"],"summary":"Minimal receipt infrastructure: workspaces may execute and benchmark but cannot self-promote to reviewed without explicit proof receipt. Defines the promotion pipeline: executable → benchmark → adversarial → candidate → proof gate → reviewed."} +{"file":"6-Documentation/docs/specs/RESEARCH_STACK_NUVMAP_ADDRESS_SPACE.md","title":"Research Stack Address Space: Mountain on Mountains (MS3C-RG)","concepts":[{"name":"NUVMAP","description":"Hierarchical meta-topological address space: (u,v,m) on 14-axis hyperbolic manifold","type":"architecture"},{"name":"Genome18","description":"Bit-exact 18-bit witness address from 6×3-bit bins","type":"definition"},{"name":"Matroska Shell","description":"Recursive shell depth S_k representing conceptual distance from Core Formalism","type":"definition"},{"name":"Crystalline Core S_0","description":"OTOM at origin: m=1.0, maximum activation, zero-drift reference","type":"definition"}],"tags":["NUVMAP","address-space","MS3C","hierarchical","genome18"],"layer":"4-Infrastructure","dependencies":["MS3C-RG","ENE"],"summary":"Mountain-on-mountains hierarchical address space. Each project mapped to NUVMAP (u,v,m) on 14-axis manifold with Genome18 bit-exact addresses. OTOM at S_0 (origin), infrastructure at S_2, external/forked at S_4, archive at S_{-1}."} +{"file":"6-Documentation/docs/specs/DP_RRC_RECEIPT_ENCODING_SPEC.md","title":"DP-RRC: Depth-Prefix Receipt Encoding for the Rainbow Raccoon Compiler","concepts":[{"name":"BraidReceipt","description":"6-dimension receipt: crossing matrix C, Sidon slack σ, step count k, residuals ε_seq, time t, scar absence ∅","type":"definition"},{"name":"BraidBracket","description":"B(κ,μ) = {lower, upper, gap, kappa, phi, admissible} from PhaseVec","type":"definition"},{"name":"Sidon labels","description":"Powers of 2: {1,2,4,8,16,32,64,128} for 8 strands — all pairwise sums unique","type":"definition"},{"name":"Depth-prefix encoding","description":"Dot-prefixed depth markers as alternative to parentheses for tree receipt data","type":"algorithm"},{"name":"eigensolid convergence","description":"detected when crossStep(s) = s; step count k encodes contraction strength","type":"gate"}],"tags":["RRC","receipt","encoding","depth-prefix","Sidon","eigensolid"],"layer":"0-Core-Formalism","dependencies":["BraidEigensolid.lean","RRC.Emit","AVMIsa.Emit"],"summary":"Depth-prefix receipt encoding for RRC compressor. 6 receipt dimensions (C,σ,k,ε_seq,t,∅_scars) ARE the compressed state. BraidBracket computed from PhaseVec octagonal norm. Sidon labels give collision-free crossing addresses."} +{"file":"6-Documentation/docs/specs/AVM_CANONICAL_SPEC.md","title":"Canonical Specification for the Adaptive Virtual Machine (AVM)","concepts":[{"name":"AVM Core","description":"Lean-defined ISA: finite opcodes, finite value types, deterministic step/run semantics","type":"architecture"},{"name":"Adapter shims","description":"Python/Rust/C backends that strip/serialize/reinterpret into AVM programs","type":"architecture"},{"name":"Closed-world opcodes","description":"Finite and enumerable instruction set defined as Lean inductive","type":"definition"}],"tags":["AVM","ISA","Lean","virtual-machine","adapter"],"layer":"0-Core-Formalism","dependencies":["AVMIsa","Lean"],"summary":"Canonical AVM design: Lean-only ISA with finite opcodes and value types. All non-Lean languages are adapter shims that strip/serialize into AVM programs. They may not introduce new ISA meaning or add ad-hoc branching policy."} +{"file":"6-Documentation/docs/specs/GCCL_ENCODING_CONTRACT.md","title":"GCCL Encoding Contract","concepts":[{"name":"GCCL","description":"Geometric, Cognitive, and Compression Law — decides if transformation is lawful enough to promote","type":"gate"},{"name":"Seven law surfaces","description":"Geometric, Cognitive, Compression, Residual, Cost, Scale, Receipt","type":"definition"},{"name":"Transition encoding","description":"GCCL encodes transitions (source→transform→target→receipt decision), not just objects","type":"definition"}],"tags":["GCCL","encoding","law","promotion","transition","surfaces"],"layer":"0-Core-Formalism","dependencies":["GCCL.lean"],"summary":"GCCL = Geometric, Cognitive, and Compression Law. Encodes transitions, not objects. Every encoded object declares 7 law surfaces: Geometric, Cognitive, Compression, Residual, Cost, Scale, Receipt."} +{"file":"6-Documentation/docs/specs/DP_TEXEL_8K_ENCODING_SPEC.md","title":"DisplayPort × NVENC Texel Stream Specification","concepts":[{"name":"8K60 texel transport","description":"7680×4320@60Hz = 33.18M pixels/frame, ~100 MB/s raw texel bandwidth","type":"spec"},{"name":"NVENC 8-session encoding","description":"8 concurrent H.265 sessions: φ-phase, amplitude, velocity tensor, witness, VBLANK, HBLANK, DDC, CEC","type":"architecture"},{"name":"Texel lane mapping","description":"Lane 0: φ-phase, Lane 1: A_n amplitude, Lane 2: v_ij tensor, Lane 3: witness","type":"definition"}],"tags":["DisplayPort","NVENC","texel","8K","H.265","GPU"],"layer":"4-Infrastructure","dependencies":["NVENC","DP"],"summary":"8K60 texel transport via DisplayPort + NVENC hardware encoding. 8 concurrent sessions carrying φ-phase, amplitude, velocity tensor, witness, VBLANK TVI, HBLANK mistake vectors, DDC attestation, CEC clock."} +{"file":"6-Documentation/docs/specs/ENE_MEMORY_ATLAS_SPEC.md","title":"ENE Memory Atlas Spec","concepts":[{"name":"MemoryAtom","description":"One record with voxel_key, manifold_5d, concept_vector, fractal hash triplet, Q0_16 scalar","type":"definition"},{"name":"Fractal hash triplet","description":"direct_hash + subtree_fold + parent_fold for integrity verification","type":"primitive"},{"name":"14-axis concept vector","description":"Signed Q0_16 axes weighted by φ^{-i}","type":"definition"},{"name":"ENE Memory Atlas","description":"Unified address-first, signed, MMR-attested, BFT-replicated memory surface","type":"architecture"}],"tags":["ENE","memory","atlas","concept-vector","fractal-hash","Q0_16"],"layer":"4-Infrastructure","dependencies":["ENE","Q0_16","MMR"],"summary":"Unified addressable memory surface for all LLMs. MemoryAtom carries voxel_key, 5D manifold point, 14-axis concept vector, fractal hash triplet, signed Q0_16 scalar, and three projection lanes. MMR-attested, BFT-replicated."} +{"file":"6-Documentation/docs/specs/HDMI_Field_Encoding_Spec.md","title":"HDMI Field Encoding Specification","concepts":[{"name":"TMDS lane hijacking","description":"3 TMDS lanes repurposed for soliton φ-parameter, amplitude, velocity tensor","type":"architecture"},{"name":"Control period abuse","description":"Data Island Periods carry soliton topology metadata instead of audio/InfoFrames","type":"architecture"},{"name":"DDC witness exchange","description":"I2C channel repurposed for soliton witness exchange","type":"architecture"},{"name":"White hole decoder","description":"Receiver reconstructs soliton field; display is decoder, not framebuffer","type":"definition"}],"tags":["HDMI","TMDS","soliton","physical-layer","abuse","encoding"],"layer":"4-Infrastructure","dependencies":["HDMI","TMDS"],"summary":"Physical layer hijacking of HDMI: TMDS lanes carry soliton field parameters, Data Islands carry topology metadata, DDC channel carries witness exchange. Display becomes a white hole decoder."} +{"file":"6-Documentation/docs/specs/PROJECTABLE_GEOMETRY_COMPRESSOR_SPEC.md","title":"Projectable Geometry Compressor Spec","concepts":[{"name":"Projectable geometry compression","description":"project → preserve → improve: map to lower-dim control basis, track residuals, amortize over corpus","type":"architecture"},{"name":"Residual sidecar","description":"Every displaced coordinate tracked in a residual lane","type":"definition"},{"name":"Compression inequality","description":"K(model) + K(residuals|model) < K(raw objects) required for promotion","type":"gate"}],"tags":["compression","geometry","projection","residual","corpus"],"layer":"0-Core-Formalism","dependencies":["StandardModel","Lagrangian"],"summary":"Compressor design turning large objects into shared projectable geometry + compact carrier symbols + bounded residual sidecars + exact rehydration receipts. No compression claim promoted until benchmarked against baselines."} +{"file":"6-Documentation/docs/specs/PHI_S3C_PIST_BRIDGE_SPEC.md","title":"Phi-S3C-PIST Bridge Spec","concepts":[{"name":"Phi-S3C-PIST bridge","description":"Connects Phi center to S3C shell coordinates and PIST witness transport","type":"bridge"},{"name":"Role boundaries","description":"Phi_field=cost comparison, S3C=shell atlas, PIST=witness transport, phinary=indexing, GraphML=lineage","type":"definition"},{"name":"Bridge record","description":"JSON with phi_role, s3c_role, pist_role, phinary_id, lineage_role per node","type":"definition"}],"tags":["Phi","S3C","PIST","bridge","phinary","GraphML"],"layer":"0-Core-Formalism","dependencies":["Phi_field","S3C","PIST","GraphML"],"summary":"March orders connecting Phi center to S3C coordinates and PIST transport. Each node gets a bridge record with phi_role, s3c_role, pist_role, phinary_id, and lineage_role."} +{"file":"6-Documentation/docs/specs/MORPHIC_NEURAL_NETWORK_ROUTING_SPEC.md","title":"Morphic Neural Network Routing Layer","concepts":[{"name":"MNN routing layer","description":"Adaptive path formation between LUT admission and GCL codons","type":"architecture"},{"name":"Goal-aware routing","description":"MNN interprets packet goal (health, attest, compress, recover, route) and selects path","type":"algorithm"},{"name":"Morphic topology","description":"Routing tables reshape based on current manifold state","type":"architecture"}],"tags":["MNN","routing","adaptive","morphic","GCL","LUT"],"layer":"4-Infrastructure","dependencies":["LUT","GCL","Omnitoken"],"summary":"Low-level adaptive routing between LUT admission and GCL codons. Not deep learning — a morphic router reshaping paths based on packet goal, node state, carrier conditions, recovery pressure, and cost."} +{"file":"6-Documentation/docs/specs/LLM_REFINEMENT_PROTOCOL.md","title":"LLM Refinement Protocol","concepts":[{"name":"Table expansion","description":"Infer hidden dimensions of concept with axis, proxy, uncertainty, failure mode columns","type":"recipe"},{"name":"Lens sweep","description":"Run concept through hostile scientist, patent examiner, systems engineer, formal-methods, safety, implementation lenses","type":"recipe"},{"name":"Glossary lock","description":"Extract polysemic terms and give each a local project definition","type":"recipe"},{"name":"Primitive compression","description":"Collapse concept into 4 keeper primitives: field, shear, packet, spectral","type":"recipe"},{"name":"Residual audit","description":"Mark each subclaim as metaphor, hypothesis, engineering delta, evidence-backed, or rejected","type":"recipe"}],"tags":["LLM","refinement","protocol","methodology","audit"],"layer":"6-Documentation","dependencies":[],"summary":"Protocol for converting rough research ideas into stable, auditable refinement loops. 7 steps: table expansion, lens sweep, glossary lock, primitive compression, residual audit, test hook, warden pass."} +{"file":"6-Documentation/docs/specs/ANGRYSPHINX_DONATED_CYCLE_GATE_SPEC.md","title":"AngrySphinx Donated-Cycle Gate Specification","concepts":[{"name":"Donated-Cycle Gate","description":"Web proof-of-defense where client compute contributes to defender's gate calibration","type":"architecture"},{"name":"Proof-of-defense receipt","description":"Every accepted proof leaves an auditable defensive receipt","type":"receipt"},{"name":"Difficulty scaling","description":"Challenge difficulty increases based on observed attack pressure","type":"algorithm"},{"name":"Hashcash-compatible fallback","description":"Default challenge remains hashcash-compatible; useful work optional and bounded","type":"protocol"}],"tags":["AngrySphinx","proof-of-work","web-security","anti-bot","proof-of-defense"],"layer":"4-Infrastructure","dependencies":["AngrySphinx","Anubis"],"summary":"Web-facing proof-of-defense layer: suspicious clients spend compute that improves gate calibration instead of being discarded. Compatible with Anubis-style anti-bot proxy. Attacker either leaves or donates defensive cycles."} +{"file":"6-Documentation/docs/specs/BERNOULLI_OCCUPANCY_RECEIPT_MATH.md","title":"Bernoulli Occupancy Receipt Math","concepts":[{"name":"Bernoulli occupancy","description":"Probabilistic model for receipt slot occupancy","type":"algorithm"}],"tags":["Bernoulli","receipt","occupancy","math"],"layer":"0-Core-Formalism","dependencies":["Q16_16"],"summary":"Mathematical framework for Bernoulli occupancy in receipt systems."} +{"file":"6-Documentation/docs/specs/BurgersHarmonicPeelingVerification.md","title":"Burgers Harmonic Peeling Verification","concepts":[{"name":"Harmonic peeling","description":"Verification of Burgers PDE harmonic decomposition","type":"theorem"}],"tags":["Burgers","harmonic","peeling","verification"],"layer":"0-Core-Formalism","dependencies":["BurgersPDE.lean"],"summary":"Verification of harmonic peeling for Burgers PDE decomposition."} +{"file":"6-Documentation/docs/specs/CBF_Hardware_Spec.md","title":"CBF Hardware Spec","concepts":[{"name":"CBF","description":"Custom hardware block specification","type":"spec"}],"tags":["CBF","hardware","spec"],"layer":"4-Infrastructure","dependencies":[],"summary":"Custom hardware block specification."} +{"file":"6-Documentation/docs/specs/CONTINUED_FRACTION_COMPRESSION_ADAPTATION.md","title":"Continued Fraction Compression Adaptation","concepts":[{"name":"Continued fraction compression","description":"Compression via continued fraction representation","type":"algorithm"}],"tags":["compression","continued-fraction","adaptation"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Adaptation of continued fractions for compression."} +{"file":"6-Documentation/docs/specs/DECODER_FACING_RECONSTRUCTION_CORE.md","title":"Decoder-Facing Reconstruction Core","concepts":[{"name":"Reconstruction core","description":"Decoder-facing core for state reconstruction","type":"architecture"}],"tags":["decoder","reconstruction","core"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Decoder-facing reconstruction core architecture."} +{"file":"6-Documentation/docs/specs/DRIFT_QUARANTINE_YANG_MILLS_SPEC.md","title":"Drift Quarantine Yang-Mills Spec","concepts":[{"name":"Drift quarantine","description":"Isolation of drift-affected Yang-Mills computations","type":"gate"}],"tags":["Yang-Mills","drift","quarantine","physics"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Specification for quarantining drift-affected Yang-Mills computations."} +{"file":"6-Documentation/docs/specs/EMBEDDED_NODE_SURFACE_SPEC.md","title":"Embedded Node Surface Spec","concepts":[{"name":"Embedded node surface","description":"Surface layer for embedded compute nodes","type":"architecture"}],"tags":["embedded","node","surface"],"layer":"4-Infrastructure","dependencies":[],"summary":"Embedded node surface specification."} +{"file":"6-Documentation/docs/specs/ENE_HOTSWAP_PLUGIN_ARCHITECTURE.md","title":"ENE Hotswap Plugin Architecture","concepts":[{"name":"Hotswap plugin","description":"scan → plan → commit → verify plugin lifecycle for ENE","type":"architecture"}],"tags":["ENE","hotswap","plugin"],"layer":"4-Infrastructure","dependencies":["ENE"],"summary":"ENE hotswap plugin architecture with scan-plan-commit-verify lifecycle."} +{"file":"6-Documentation/docs/specs/FORWARD_FOUNDATION_EQUATION_COMPILER.md","title":"Forward Foundation Equation Compiler","concepts":[{"name":"Equation compiler","description":"Forward compilation of foundation equations","type":"tool"}],"tags":["compiler","equation","foundation"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Forward foundation equation compiler specification."} +{"file":"6-Documentation/docs/specs/GCL_FIELD_EQUATIONS_SPEC.md","title":"GCL Field Equations Spec","concepts":[{"name":"GCL field equations","description":"Field equation specifications for Genetic Code Language","type":"spec"}],"tags":["GCL","field","equations"],"layer":"0-Core-Formalism","dependencies":["GCL"],"summary":"Field equation specifications for GCL."} +{"file":"6-Documentation/docs/specs/GCL_TOPOLOGY_REVISION_SPEC.md","title":"GCL Topology Revision Spec","concepts":[{"name":"GCL topology revision","description":"Topology revision rules for GCL evolution","type":"spec"}],"tags":["GCL","topology","revision"],"layer":"0-Core-Formalism","dependencies":["GCL"],"summary":"Topology revision specification for GCL."} +{"file":"6-Documentation/docs/specs/GENSIS_COMPILER_SPEC.md","title":"GENSIS Compiler Spec","concepts":[{"name":"GENSIS","description":"Genesis compiler for structured object transformation","type":"tool"}],"tags":["GENSIS","compiler","genesis"],"layer":"0-Core-Formalism","dependencies":[],"summary":"GENSIS compiler specification for structured object transformation."} +{"file":"6-Documentation/docs/specs/GEOMETRY_EMERGENCY_BOOT_WITNESS_2026-04-08.md","title":"Geometry Emergency Boot Witness","concepts":[{"name":"Emergency boot witness","description":"Boot-time geometric witness for emergency recovery","type":"receipt"}],"tags":["geometry","boot","witness","emergency"],"layer":"4-Infrastructure","dependencies":[],"summary":"Emergency boot witness for geometric state recovery."} +{"file":"6-Documentation/docs/specs/HUMAN_SURFACE_JSONL_SPEC.md","title":"Human Surface JSONL Spec","concepts":[{"name":"Human surface JSONL","description":"JSONL format for human-readable surface data","type":"spec"}],"tags":["JSONL","human-surface","format"],"layer":"6-Documentation","dependencies":[],"summary":"JSONL specification for human-readable surface data."} +{"file":"6-Documentation/docs/specs/HYDROGENIC_PHI_TORSION_BRAID.md","title":"Hydrogenic Phi-Torsion Braid","concepts":[{"name":"Hydrogenic phi-torsion","description":"Braid algebra using golden ratio torsion","type":"definition"}],"tags":["hydrogenic","phi","torsion","braid"],"layer":"0-Core-Formalism","dependencies":["Phi","Braid"],"summary":"Hydrogenic phi-torsion braid algebra."} +{"file":"6-Documentation/docs/specs/INFORMATION_MANIFOLD_TAXONOMY.md","title":"Information Manifold Taxonomy","concepts":[{"name":"Information manifold taxonomy","description":"Classification of information manifolds by structural properties","type":"definition"}],"tags":["information","manifold","taxonomy"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Taxonomy for classifying information manifolds."} +{"file":"6-Documentation/docs/specs/K3_COMPLIANT_NODE_STRUCTURE.md","title":"K3 Compliant Node Structure","concepts":[{"name":"K3 compliance","description":"Node structure compliant with K3 formalization standard","type":"definition"}],"tags":["K3","compliance","node","structure"],"layer":"0-Core-Formalism","dependencies":[],"summary":"K3-compliant node structure definition."} +{"file":"6-Documentation/docs/specs/LANGUAGE_SET_MANIFOLD_GRAPH_TYPING.md","title":"Language Set Manifold Graph Typing","concepts":[{"name":"Manifold graph typing","description":"Type system for language set manifold graphs","type":"definition"}],"tags":["language","manifold","graph","typing"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Type system for language set manifold graphs."} +{"file":"6-Documentation/docs/specs/LAW_GATED_RECONSTRUCTION_CORE_SHIFT.md","title":"Law-Gated Reconstruction Core Shift","concepts":[{"name":"Law-gated reconstruction","description":"Reconstruction core with law-based admission gates","type":"architecture"}],"tags":["law","reconstruction","gate","core"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Reconstruction core with law-based admission gates."} +{"file":"6-Documentation/docs/specs/MS3C_NESTED_REDUCTION_GEAR_SPEC.md","title":"MS3C Nested Reduction Gear Spec","concepts":[{"name":"MS3C-RG","description":"Matroska S3C Nested Reduction Gear for hierarchical encoding","type":"architecture"}],"tags":["MS3C","reduction-gear","hierarchical","encoding"],"layer":"4-Infrastructure","dependencies":["S3C"],"summary":"Matroska S3C Nested Reduction Gear specification for hierarchical address encoding."} +{"file":"6-Documentation/docs/specs/NII_CORE_DRIVER_COMPLETION_SUMMARY.md","title":"NII Core Driver Completion Summary","concepts":[{"name":"NII core driver","description":"Network Interface Integration core driver completion report","type":"receipt"}],"tags":["NII","driver","completion","network"],"layer":"4-Infrastructure","dependencies":[],"summary":"NII core driver completion summary."} +{"file":"6-Documentation/docs/specs/NII_CORE_DRIVER_IMPLEMENTATION_PLAN.md","title":"NII Core Driver Implementation Plan","concepts":[{"name":"NII driver plan","description":"Implementation plan for NII core driver","type":"recipe"}],"tags":["NII","driver","plan","implementation"],"layer":"4-Infrastructure","dependencies":[],"summary":"Implementation plan for NII core driver."} +{"file":"6-Documentation/docs/specs/OMINDIRECTION_LOGOGRAM_DESIGN_AND_COMPILER.md","title":"Omindirection Logogram Design and Compiler","concepts":[{"name":"Omindirection logograms","description":"Direction/chirality/phase-bearing symbolic atoms","type":"definition"},{"name":"Logogram compiler","description":"Compiler for logogram design and encoding","type":"tool"}],"tags":["Omindirection","logogram","compiler","symbology"],"layer":"0-Core-Formalism","dependencies":["Omindirection"],"summary":"Design and compiler for Omindirection logograms with direction, chirality, phase, and placement."} +{"file":"6-Documentation/docs/specs/OMNITOKEN_GCL_REDESIGN.md","title":"Omnitoken GCL Redesign","concepts":[{"name":"Omnitoken GCL","description":"Redesigned Genetic Code Language with Omnitoken addressing","type":"architecture"}],"tags":["Omnitoken","GCL","redesign"],"layer":"0-Core-Formalism","dependencies":["Omnitoken","GCL"],"summary":"Redesign of GCL with Omnitoken addressing."} +{"file":"6-Documentation/docs/specs/Oracle_Interrogation_IDPC_v0_1.md","title":"Oracle Interrogation IDPC v0.1","concepts":[{"name":"Oracle interrogation","description":"IDPC protocol for oracle-based problem classification","type":"protocol"}],"tags":["oracle","IDPC","interrogation","protocol"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Oracle interrogation protocol for IDPC problem classification."} +{"file":"6-Documentation/docs/specs/Quaternion_Sidon_Standing_Field_v0_1.md","title":"Quaternion Sidon Standing Field v0.1","concepts":[{"name":"Quaternion Sidon field","description":"Standing field using quaternion algebra with Sidon address structure","type":"definition"}],"tags":["quaternion","Sidon","standing-field"],"layer":"0-Core-Formalism","dependencies":["Quaternion","Sidon"],"summary":"Quaternion Sidon standing field combining quaternion algebra with Sidon pair-addressing."} +{"file":"6-Documentation/docs/specs/RECONSTRUCTION_CORE_MATH_REVIEW_2026_05_09.md","title":"Reconstruction Core Math Review","concepts":[{"name":"Math review","description":"Mathematical review of reconstruction core correctness","type":"receipt"}],"tags":["reconstruction","review","math"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Mathematical review of reconstruction core."} +{"file":"6-Documentation/docs/plans/SilverSight_completion_pipeline.md","title":"SilverSight Completion Pipeline — Microstep Edition","concepts":[{"name":"SilverSight pipeline","description":"Per-file, per-theorem, per-commit microsteps for SilverSight completion","type":"recipe"},{"name":"Claim-state manifest","description":"BEAUTIFUL_PROVISIONAL → CALIBRATED_ENGINEERING_DELTA → REVIEWED → VERIFIED tracking","type":"gate"},{"name":"YaFF-inspired core","description":"Schema/Layout/WireFormat/View/CanalLayout Lean modules","type":"architecture"},{"name":"Library method","description":"Core/ defines contracts; libraries implement them; libraries never import libraries","type":"pattern"}],"tags":["SilverSight","pipeline","microsteps","Lean","plan"],"layer":"0-Core-Formalism","dependencies":["SilverSight","FixedPoint","Bind"],"summary":"Detailed microstep pipeline for SilverSight completion. Phase 0/1 boundary reached: YaFF core compiles (2987 jobs), Q16_16 roundtrip proven. Remaining: product-type encoders, DynamicCanal physics, theorem triage, extraction targets."} +{"file":"6-Documentation/docs/plans/SOVEREIGN_PROCEED_PLAN_V1.md","title":"Sovereign Proceed Plan: 48-Hour Execution","concepts":[{"name":"Burgers theorem hardening","description":"Replace sorry markers with proofs using norm_num/field_simp/linarith","type":"recipe"},{"name":"UART packet structure","description":"FPGA loopback test: 0xAA start + 18-bit state + XOR checksum","type":"spec"},{"name":"Hardware loopback","description":"Tang Nano 9K UART echo test for state + computed kernel value","type":"recipe"}],"tags":["plan","Burgers","FPGA","UART","hardware-loopback"],"layer":"6-Documentation","dependencies":["BurgersPDE.lean","Tang Nano 9K"],"summary":"48-hour execution plan: harden Burgers theorems (replace sorry with proofs), design UART packet structure for FPGA loopback, and test Tang Nano 9K echo."} +{"file":"6-Documentation/docs/semantics/CORE_MANIFEST.md","title":"Core Manifest — Honest Status of the Semantics Library","concepts":[{"name":"Module status levels","description":"STABLE (no sorry, no Float), BETA (functional with gaps), SHIM (boundary code), EXPLORATORY","type":"definition"},{"name":"FixedPoint status","description":"STABLE: Q16_16.one, Q16_16.zero witnesses, foundation for all fixed-point math","type":"receipt"},{"name":"Bind status","description":"STABLE: bindPreservesInvariant witness, core bind primitive","type":"receipt"},{"name":"Sorry inventory","description":"BraidCross 2 sorry, Constitution 1 sorry, Tests 18 sorry (test debt)","type":"receipt"}],"tags":["manifest","status","Lean","sorry","module-inventory"],"layer":"0-Core-Formalism","dependencies":["FixedPoint","Bind","Canon","Graph"],"summary":"Honest status document classifying modules as STABLE/BETA/SHIM/EXPLORATORY. FixedPoint and Bind are STABLE. BraidCross has 2 sorry (associativity/commutativity), Constitution has 1 sorry (totality)."} +{"file":"6-Documentation/docs/semantics/LEAN_PORT_ORCHESTRATION_MAP.md","title":"Lean Port Orchestration Map","concepts":[{"name":"Single Orchestration Layer","description":"0-Core-Formalism/lean/Semantics/ is the only place where invariants are checked, costs computed, transitions validated","type":"architecture"},{"name":"Domain-by-domain port map","description":"Systematic plan to port every repo domain to Lean 4","type":"recipe"},{"name":"Three categories","description":"Every file: Lean Core (source of truth), Thin Shim (I/O only), or Deleted","type":"gate"}],"tags":["Lean","orchestration","port","migration","SOL"],"layer":"0-Core-Formalism","dependencies":["Semantics","lake build"],"summary":"Forced systematic port of every domain to Lean 4. Single Orchestration Layer = Semantics/. Categories: Lean Core (source of truth), Thin Shim (I/O), Deleted. One module at a time; lake build must never break."} +{"file":"6-Documentation/docs/semantics/LEAN_NAMING_CONVENTIONS.md","title":"Strict Naming Conventions for the Lean Port","concepts":[{"name":"PascalCase files","description":"All Lean files: PascalCase.lean, one module per file","type":"definition"},{"name":"camelCase functions","description":"All functions camelCase, all types PascalCase","type":"definition"},{"name":"Semantics root namespace","description":"Every file opens with namespace Semantics or Semantics.","type":"definition"},{"name":"Banned patterns","description":"No snake_case, no getFoo/setFoo/checkFoo, no _v2/_final, no test_ prefixes","type":"definition"}],"tags":["naming","conventions","Lean","style-guide"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Mandatory naming conventions: PascalCase files, PascalCase types, camelCase functions, Semantics root namespace. Banned: snake_case, getFoo/setFoo, _v2/_final, test_ prefixes."} +{"file":"6-Documentation/docs/semantics/CANONICAL_FORMULA_INDEX.md","title":"Canonical Formula Index: Sovereign Informatic Manifold","concepts":[{"name":"Cognitive Load Equation","description":"L_total = L_intrinsic + L_extraneous + L_germane + L_routing + L_memory","type":"definition"},{"name":"Infohazard Containment Protocol","description":"Detection levels (Quiescent/Peripheral/Investigative/Adversarial) with repulsion modes","type":"protocol"},{"name":"AngrySphinx Difficulty Scaling","description":"H_{t+1} = H_t + max(0, δ·(L_E - 10.0))","type":"algorithm"},{"name":"Metric-Coupled Convergence","description":"η = L_germane/ΣL_total + ΔEnergy_manifold","type":"definition"}],"tags":["formulas","cognitive-load","ICP","AngrySphinx","canonical"],"layer":"0-Core-Formalism","dependencies":["Q16_16"],"summary":"Canonical mathematical ground truth: Cognitive Load Equation, Infohazard Containment Protocol (4 detection levels), AngrySphinx difficulty scaling, SSMS cycle balancing, and Metric-Coupled Convergence."} +{"file":"6-Documentation/docs/semantics/HUTTER_PRIZE_STRATEGY.md","title":"Hutter Prize Submission Strategy for PIST Extended Encoding","concepts":[{"name":"enwik9","description":"First 10⁹ bytes of enwiki-20060303-pages-articles.xml (fixed corpus)","type":"definition"},{"name":"Hutter Prize formula","description":"Award = 500,000€ × (1 − S/L); S = S1(compressor) + S2(archive)","type":"definition"},{"name":"Current record","description":"fx2-cmix: 110,793,128 bytes (~105.6 MiB), 11.08% compression ratio","type":"receipt"},{"name":"PIST Extended Encoding","description":"Stack's approach to Hutter Prize using PIST + braid eigensolid","type":"architecture"}],"tags":["Hutter-Prize","enwik9","compression","PIST","competition"],"layer":"6-Documentation","dependencies":["PIST","BraidEigensolid"],"summary":"Hutter Prize strategy: enwik9 = 1GB fixed corpus. Current record 105.6 MiB by fx2-cmix. Prize target S < 109.6 MB (1% improvement = €5,000). Stack uses PIST Extended Encoding with braid eigensolid compressor."} +{"file":"6-Documentation/docs/semantics/ene_schema_specification.md","title":"ENE Schema Specification v1.0.0","concepts":[{"name":"Type hierarchy","description":"BaseArchiveRecord → EnhancedArchiveRecord → AttestedArchiveRecord","type":"definition"},{"name":"BaseArchiveRecord","description":"Lossless preservation: archive_id, source_type, raw_content, content_hash","type":"definition"},{"name":"EnhancedArchiveRecord","description":"Semantic enrichment layer with concept anchors and relations","type":"definition"},{"name":"AttestedArchiveRecord","description":"Provenance verification layer with MMR receipts","type":"definition"},{"name":"ArchiveID derivation","description":"Content-addressed ID from source_prefix + content_truncated","type":"algorithm"}],"tags":["ENE","schema","archive","type-hierarchy","specification"],"layer":"4-Infrastructure","dependencies":["ENE"],"summary":"Formal ENE schema: BaseArchiveRecord (lossless) → EnhancedArchiveRecord (semantic) → AttestedArchiveRecord (provenance). Content-addressed ArchiveIDs, SHA-256 content hashes, extraction versioning."} +{"file":"6-Documentation/docs/speculative-materials/PyrochloreSidonBridge.md","title":"Pyrochlore–Sidon Bridge: Experimental Verification","concepts":[{"name":"Pyrochlore-Sidon bridge","description":"15% entropy recovery in KMMC and 90% spectral weight in NaCaNi₂F₇ are the same Sidon packing bound","type":"theorem"},{"name":"Sidon sumset on tetrahedron","description":"Labels {1,2,4,8} cannot close more than 10-15% of 6 edges simultaneously","type":"theorem"},{"name":"KMMC verification","description":"Classical Heisenberg 4-spin tetrahedron: 15% closure at T_c=258mK matches experiment","type":"receipt"}],"tags":["pyrochlore","Sidon","experimental","condensed-matter","verification"],"layer":"0-Core-Formalism","dependencies":["Sidon","tetrahedron"],"summary":"Experimental verification: 15% entropy recovery in KMMC (S=5/2) and 90% spectral weight in NaCaNi₂F₇ (S=1) are the same Sidon packing bound on tetrahedron with labels {1,2,4,8}."} +{"file":"6-Documentation/docs/speculative-materials/RavenRRCBridge.md","title":"Raven's Progressive Matrices → Rainbow Raccoon Compiler","concepts":[{"name":"RPM-RRC isomorphism","description":"Raven's 3×3 grid constraint completion = Sidon sumset closure","type":"bridge"},{"name":"RPM rule types as Sidon","description":"Addition=sum, Subtraction=difference, Rotation=cyclic perm, Shading=AND mask, Size=progression","type":"bridge"},{"name":"9-cell constraint graph","description":"3×3 grid with Sidon addresses {1,2,4,8,16,32,64,128,256}","type":"definition"}],"tags":["Raven","RRC","Sidon","isomorphism","constraint-completion"],"layer":"0-Core-Formalism","dependencies":["RRC","Sidon"],"summary":"Formal isomorphism: Raven's Progressive Matrices = Sidon sumset closure. 3×3 grid with 9 Sidon addresses. Missing cell must satisfy all constraint rules. RPM rule types map to Sidon operations."} +{"file":"6-Documentation/docs/speculative-materials/MULTI_PAPER_PUBLICATION_STRATEGY.md","title":"Multi-Paper Publication Strategy: The Research Stack Framework","concepts":[{"name":"Paper architecture","description":"4-6 papers across 4 tiers: Foundation → Information Theory → Biological Application → Synthesis","type":"recipe"},{"name":"Tier 1: Foundation papers","description":"Hydrogen Base Layer, Constraint-Induced Compression","type":"recipe"},{"name":"Tier 2: Information Theory","description":"Compression theory papers for Entropy/Information journals","type":"recipe"},{"name":"18-36 month timeline","description":"Parallel development across tiers","type":"recipe"}],"tags":["publication","strategy","papers","academic","planning"],"layer":"6-Documentation","dependencies":[],"summary":"Publication strategy: 4-6 papers in 18-36 months. Tier 1: foundation (hydrogen, compression). Tier 2: information theory. Tier 3: biological application. Tier 4: synthesis. Venues include Phys Rev E, Entropy, Nature."} +{"file":"6-Documentation/famm/SIDON_FAMM_MAP.md","title":"Sidon FAMM Map","concepts":[{"name":"Sidon gate","description":"G_Sidon(A)=1 ⟺ all pairwise sums a+b are unique","type":"gate"},{"name":"Candidate-addition gate","description":"New element a* is admissible iff a*+a_i distinct from all existing sums","type":"gate"},{"name":"Collision scar","description":"Failed candidate produces a FAMM scar record","type":"receipt"},{"name":"Full Sidon thread","description":"Classical Sidon → pair-sum gate → candidate receipt → collision scar → physics packet → quaternion anti-alias → two-layer lattice → Theodorus shell → Semantic Mass → NUVMAP Delta-DAG → BJD cleanup → exact verifier","type":"pipeline"}],"tags":["Sidon","FAMM","gate","collision","pipeline"],"layer":"0-Core-Formalism","dependencies":["Sidon","FAMM","BraidStorm"],"summary":"Operational Sidon map: classical Sidon set → pair-sum gate → candidate-addition receipt → collision scar → physics packet → quaternion anti-alias → two-layer lattice → Semantic Mass → NUVMAP → BJD cleanup → exact verifier."} +{"file":"6-Documentation/famm/BRAIDSTORM_SIDON_CROSSING_ANTIALIAS_GATE.md","title":"BraidStorm Sidon Crossing Anti-Alias Gate","concepts":[{"name":"Sidon crossing addresses","description":"Assign each BraidStorm strand a Sidon label so every crossing {i,j} has unique address a_i+a_j","type":"gate"},{"name":"Collision-free crossing","description":"Solves pair-address aliasing for BraidStorm receipts, scars, delta edges","type":"primitive"},{"name":"8-strand canonical set","description":"Powers of 2: {1,2,4,8,16,32,64,128} for 8 strands","type":"definition"}],"tags":["BraidStorm","Sidon","crossing","anti-alias","addressing"],"layer":"0-Core-Formalism","dependencies":["BraidStorm","Sidon"],"summary":"Uses Sidon pair-sum uniqueness for collision-free BraidStorm crossing addresses. Each strand gets a Sidon label; every crossing {i,j} has unique address a_i+a_j. Solves aliasing for receipts, scars, delta edges, and NUVMAP handoffs."} +{"file":"6-Documentation/famm/ANTI_FAMM_SHADOW_ADVERSARY.md","title":"Anti-FAMM Shadow Adversary","concepts":[{"name":"Anti-FAMM","description":"Adversarial dual of FAMM: finds where FAMM failed to see scars or over-scarred valid routes","type":"gate"},{"name":"Nullspace attack","description":"Searches for perturbation η∈ker DΠ_X that changes dangerous behavior DT_X[η]≠0","type":"algorithm"},{"name":"Shadow objective","description":"A_FAMM(X) = sup_{η∈ker DΠ_X,‖η‖≤1} ‖DT_X[η]‖; above threshold = incomplete witness","type":"definition"},{"name":"False pass / False scar","description":"FAMM says PASS but Anti-FAMM finds hidden residual; or FAMM says SCAR but route was lawful","type":"definition"}],"tags":["Anti-FAMM","adversarial","shadow","nullspace","validation"],"layer":"0-Core-Formalism","dependencies":["FAMM"],"summary":"Adversarial dual testing FAMM blind spots. Searches kernel of witness projection for perturbations that change dangerous behavior. Shadow objective above threshold means witness packet is incomplete."} +{"file":"6-Documentation/famm/BUILDER_JUDGE_WARDEN_GEODESIC_CLEANUP_FILTER.md","title":"Builder-Judge-Warden Geodesic Cleanup Filter","concepts":[{"name":"BJW triadic filter","description":"Builder proposes cleanup, Judge verifies law/receipt, Warden blocks unsafe collapse","type":"architecture"},{"name":"Cleanup loss","description":"L_BJW(E) = αC(E) + βR(E) + γΩ(E) − δI(E) + λP(E)","type":"definition"},{"name":"Geodesic cleanup path","description":"Shortest lawful cleanup preserving invariants and ending in receipt","type":"algorithm"}],"tags":["BJW","Builder","Judge","Warden","cleanup","geodesic","FAMM"],"layer":"0-Core-Formalism","dependencies":["FAMM","TSM"],"summary":"Triadic cleanup layer: Builder proposes moves, Judge verifies invariants/receipts, Warden blocks unsafe collapse. Cleanup loss balances complexity, residual, scar pressure, invariant strength, and promotion cost."} +{"file":"6-Documentation/famm/16D_CHAOS_GAME_FIELD_SHRINKER.md","title":"16D Chaos Game Field Shrinker","concepts":[{"name":"16D chaos game","description":"X_{t+1} = A_{σ_t} + C_{σ_t}(X_t − A_{σ_t}) + ε_t in ℝ¹⁶","type":"algorithm"},{"name":"Anchor selection","description":"Weighted by semantic mass, scar pressure, invariant overlap, route cost, receipt strength","type":"algorithm"},{"name":"Field shrinker","description":"Lifts 2D chaos game attractor into 16D manifold-addressed contraction engine","type":"architecture"}],"tags":["chaos-game","16D","FAMM","contraction","fractal"],"layer":"0-Core-Formalism","dependencies":["FAMM","SemanticMass"],"summary":"Lifts chaos game from 2D visual attractor to 16D FAMM field-shrinking engine. Anchors weighted by semantic mass, scar pressure, invariant overlap, route cost. Visible fractal is only 2D projection of 16D route/address state."} +{"file":"6-Documentation/famm/AHMED_INTEGRAL_SCALAR_WITNESS_GATE.md","title":"Ahmed Integral Scalar Witness Gate","concepts":[{"name":"Ahmed integral gate","description":"Scalar witness verification using the Ahmed integral","type":"gate"}],"tags":["Ahmed","integral","witness","gate"],"layer":"0-Core-Formalism","dependencies":["FAMM"],"summary":"Scalar witness gate using the Ahmed integral."} +{"file":"6-Documentation/famm/AUTONOMOUS_SPEEDRUN_HARNESS_GATE.md","title":"Autonomous Speedrun Harness Gate","concepts":[{"name":"Speedrun harness","description":"Automated harness for speedrun-style validation","type":"gate"}],"tags":["speedrun","harness","automation","validation"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Autonomous speedrun harness for automated validation."} +{"file":"6-Documentation/famm/BIO_ORGANOID_SIGNAL_FIELD_GATE.md","title":"Bio-Organoid Signal Field Gate","concepts":[{"name":"Bio-organoid signal","description":"Signal field gate for bio-organoid computations","type":"gate"}],"tags":["bio-organoid","signal","field","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Bio-organoid signal field gate."} +{"file":"6-Documentation/famm/CHROMATIC_HOMOTOPY_HEIGHT_SPECTRAL_GATE.md","title":"Chromatic Homotopy Height Spectral Gate","concepts":[{"name":"Chromatic homotopy gate","description":"Spectral gate using chromatic homotopy theory","type":"gate"}],"tags":["chromatic","homotopy","spectral","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Chromatic homotopy height spectral gate."} +{"file":"6-Documentation/famm/COMMON_NOISE_MFG_RICCATI_GATE.md","title":"Common Noise MFG Riccati Gate","concepts":[{"name":"MFG Riccati gate","description":"Mean-Field Game gate using Riccati equations with common noise","type":"gate"}],"tags":["MFG","Riccati","mean-field-game","noise","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Common noise mean-field game Riccati gate."} +{"file":"6-Documentation/famm/EMPIRICAL_HESSIAN_RECEIPT_PASS.md","title":"Empirical Hessian Receipt Pass","concepts":[{"name":"Hessian receipt","description":"Empirical receipt pass computing Hessian eigenvalues","type":"receipt"}],"tags":["Hessian","receipt","empirical","eigenvalue"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Empirical Hessian receipt pass."} +{"file":"6-Documentation/famm/FAMM_SEMANTIC_MASS_MATH_FOREST_PLOW.md","title":"FAMM Semantic Mass Math Forest Plow","concepts":[{"name":"Math forest plow","description":"Route clearing through math forest guided by Semantic Mass","type":"algorithm"}],"tags":["FAMM","semantic-mass","math-forest","plow"],"layer":"0-Core-Formalism","dependencies":["FAMM","SemanticMass"],"summary":"Route clearing through math forest guided by Semantic Mass."} +{"file":"6-Documentation/famm/FEYNMAN_PATH_INTEGRAL_SHADOW_WITNESS_NOTE.md","title":"Feynman Path Integral Shadow Witness Note","concepts":[{"name":"Feynman path shadow","description":"Shadow witness using Feynman path integral formalism","type":"definition"}],"tags":["Feynman","path-integral","shadow","witness"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Shadow witness using Feynman path integral formalism."} +{"file":"6-Documentation/famm/GOLDEN_BRAID_CENTERING_GATE.md","title":"Golden Braid Centering Gate","concepts":[{"name":"Golden braid centering","description":"Gate enforcing golden ratio centering in braid crossings","type":"gate"}],"tags":["golden-ratio","braid","centering","gate"],"layer":"0-Core-Formalism","dependencies":["Phi","Braid"],"summary":"Golden braid centering gate."} +{"file":"6-Documentation/famm/LOGOGRAM_CHIRALITY_ROUTE_GATE.md","title":"Logogram Chirality Route Gate","concepts":[{"name":"Chirality route gate","description":"Gate based on logogram chirality for routing decisions","type":"gate"}],"tags":["logogram","chirality","routing","gate"],"layer":"0-Core-Formalism","dependencies":["Omindirection"],"summary":"Logogram chirality route gate."} +{"file":"6-Documentation/famm/MARKOVJUNIOR_16D_PIST_REWRITE_SHIM.md","title":"MarkovJunior 16D PIST Rewrite Shim","concepts":[{"name":"MarkovJunior PIST shim","description":"MarkovJunior rewrite rules applied to 16D PIST state","type":"tool"}],"tags":["MarkovJunior","PIST","rewrite","shim"],"layer":"4-Infrastructure","dependencies":["PIST"],"summary":"MarkovJunior rewrite rules for 16D PIST state."} +{"file":"6-Documentation/famm/MOBIUS_APOLLONIUS_CHORD_PARTITION_GATE.md","title":"Möbius Apollonius Chord Partition Gate","concepts":[{"name":"Möbius Apollonius gate","description":"Chord partition gate using Möbius and Apollonius geometry","type":"gate"}],"tags":["Möbius","Apollonius","chord","partition","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Möbius Apollonius chord partition gate."} +{"file":"6-Documentation/famm/NAVIER_STOKES_MHD_CHIRAL_DRAG_NOTE.md","title":"Navier-Stokes MHD Chiral Drag Note","concepts":[{"name":"MHD chiral drag","description":"Chiral drag effect in MHD Navier-Stokes equations","type":"definition"}],"tags":["Navier-Stokes","MHD","chiral","drag"],"layer":"0-Core-Formalism","dependencies":["NavierStokes"],"summary":"Chiral drag in MHD Navier-Stokes."} +{"file":"6-Documentation/famm/NAVIER_STOKES_SHADOW_CONTROL_GAP_MAP.md","title":"Navier-Stokes Shadow Control Gap Map","concepts":[{"name":"Shadow control gap","description":"Gap map for shadow control in Navier-Stokes solutions","type":"definition"}],"tags":["Navier-Stokes","shadow","control","gap"],"layer":"0-Core-Formalism","dependencies":["NavierStokes"],"summary":"Shadow control gap map for Navier-Stokes."} +{"file":"6-Documentation/famm/NUVMAP_DELTA_DAG_SEARCH_COMPRESSOR.md","title":"NUVMAP Delta-DAG Search Compressor","concepts":[{"name":"Delta-DAG compressor","description":"Search compressor using NUVMAP delta DAG structure","type":"algorithm"}],"tags":["NUVMAP","delta-DAG","compressor","search"],"layer":"0-Core-Formalism","dependencies":["NUVMAP"],"summary":"NUVMAP delta-DAG search compressor."} +{"file":"6-Documentation/famm/NUVMAP_DELTA_DAG_SHARDING_SPEC.md","title":"NUVMAP Delta-DAG Sharding Spec","concepts":[{"name":"Delta-DAG sharding","description":"Sharding specification for NUVMAP delta DAG","type":"spec"}],"tags":["NUVMAP","delta-DAG","sharding"],"layer":"4-Infrastructure","dependencies":["NUVMAP"],"summary":"NUVMAP delta-DAG sharding specification."} +{"file":"6-Documentation/famm/OR_TOOLS_WASM_CONSTRAINT_SOLVER_GATE.md","title":"OR-Tools WASM Constraint Solver Gate","concepts":[{"name":"OR-Tools WASM gate","description":"Constraint solver gate using OR-Tools compiled to WASM","type":"gate"}],"tags":["OR-Tools","WASM","constraint-solver","gate"],"layer":"4-Infrastructure","dependencies":[],"summary":"OR-Tools WASM constraint solver gate."} +{"file":"6-Documentation/famm/PLASMA_CHIRAL_DRAG_WITNESS_GATE.md","title":"Plasma Chiral Drag Witness Gate","concepts":[{"name":"Plasma chiral drag gate","description":"Witness gate for plasma chiral drag effects","type":"gate"}],"tags":["plasma","chiral","drag","witness","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Plasma chiral drag witness gate."} +{"file":"6-Documentation/famm/POSSIBLE_CONSTRAINED_AGENT_APPROACHES.md","title":"Possible Constrained Agent Approaches","concepts":[{"name":"Constrained agent","description":"Approaches for agents operating under resource constraints","type":"recipe"}],"tags":["agent","constrained","approaches"],"layer":"6-Documentation","dependencies":[],"summary":"Possible approaches for constrained agents."} +{"file":"6-Documentation/famm/POSSIBLE_CONSTRAINED_AGENT_APPROACHES_DEEP_DIVE.md","title":"Possible Constrained Agent Approaches Deep Dive","concepts":[{"name":"Constrained agent deep dive","description":"Deep analysis of constrained agent approaches","type":"recipe"}],"tags":["agent","constrained","deep-dive"],"layer":"6-Documentation","dependencies":[],"summary":"Deep dive into constrained agent approaches."} +{"file":"6-Documentation/famm/SEMANTIC_MASS_ROUTE_PLOW_RUNNER.md","title":"Semantic Mass Route Plow Runner","concepts":[{"name":"Route plow runner","description":"Runner executing Semantic Mass route clearing","type":"tool"}],"tags":["semantic-mass","route","plow","runner"],"layer":"0-Core-Formalism","dependencies":["SemanticMass"],"summary":"Semantic Mass route plow runner."} +{"file":"6-Documentation/famm/SEMANTIC_MASS_Z_ACCELERATOR.md","title":"Semantic Mass Z-Accelerator","concepts":[{"name":"Z-accelerator","description":"Acceleration of Semantic Mass computation in Z-domain","type":"algorithm"}],"tags":["semantic-mass","Z-domain","accelerator"],"layer":"0-Core-Formalism","dependencies":["SemanticMass"],"summary":"Semantic Mass Z-accelerator."} +{"file":"6-Documentation/famm/SMALLCODE_CONSTRAINED_AGENT_EXECUTION_GATE.md","title":"SmallCode Constrained Agent Execution Gate","concepts":[{"name":"SmallCode gate","description":"Execution gate for constrained agents with code-size limits","type":"gate"}],"tags":["SmallCode","constrained","execution","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"SmallCode constrained agent execution gate."} +{"file":"6-Documentation/famm/TURBULENCE_MODEL_ATLAS_GATE.md","title":"Turbulence Model Atlas Gate","concepts":[{"name":"Turbulence atlas gate","description":"Gate for turbulence model selection from atlas","type":"gate"}],"tags":["turbulence","atlas","model","gate"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Turbulence model atlas gate."} +{"file":"6-Documentation/famm/UNIVERSAL_SHORTCUT_CENTER_MANIFOLD.md","title":"Universal Shortcut Center Manifold","concepts":[{"name":"Shortcut center manifold","description":"Universal center manifold providing shortcuts in state space","type":"definition"}],"tags":["shortcut","center-manifold","universal"],"layer":"0-Core-Formalism","dependencies":[],"summary":"Universal shortcut center manifold."} +{"file":"docs/transfold_enwiki8_magnetic_domain_generator.md","title":"Transfold Enwiki8 Magnetic Domain Generator","concepts":[{"name":"Transfold Magnetic Domain Generator","description":"Stress-test that converts a byte slice into a magnetic-domain equation receipt using entropy, byte transition rate, repeated 4-grams, and capacity overflow as analogues for field demand, agitation, remanence, and hysteresis heat-loss.","type":"algorithm"},{"name":"Magnetic Domain Equation Surface","description":"Equation L_info_i = phi^D_f * (log(1+2h_i) + MM(t_i;1,0.35) + (1-r_i)^0.6) with overflow gate G_over_i and magnetization M_i = sigmoid(((chi_i H_i) + R_i - 0.5 C_loss_i) * G_over_i).","type":"definition"},{"name":"enwik8","description":"The Hutter Prize 1GB Wikipedia XML corpus used as canonical test vector for hierarchical compression.","type":"primitive"}],"tags":["compression","magnetic-domain","stress-test","enwik8","byte-signal","routing-prior"],"layer":"infrastructure","dependencies":[],"summary":"Stress-test mapping byte-signal statistics into magnetic-domain analogues for routing and compression comparison; not a claim of compression improvement."} +{"file":"docs/transfold_couch_data_magnetic_domain_comparison.md","title":"COUCH Data Magnetic-Domain Comparison","concepts":[{"name":"COUCH Bundle Comparison","description":"Runs the same byte-signal to magnetic-domain transfold against local COUCH JSON data bundle, showing COUCH is more memory-like (higher remanence, lower susceptibility) than enwik8.","type":"recipe"},{"name":"Magnetic Domain Stress Sweep","description":"Sweeps capacity thresholds (2.50 to 5.25) measuring overflow chunks, mean overflow gate, and mean heat loss for corpus comparison.","type":"algorithm"}],"tags":["compression","magnetic-domain","COUCH","comparison","routing"],"layer":"infrastructure","dependencies":["Transfold Magnetic Domain Generator"],"summary":"Compares COUCH data bundle against enwik8 using the magnetic-domain transfold; COUCH shows higher remanence and lower heat loss, suggesting dictionary/state reuse routing."} +{"file":"docs/rrc_logogram_projection_formalism.md","title":"RRC Logogram Projection Formalism","concepts":[{"name":"LogogramReceipt","description":"Lean structure with fields: shape, status, regime, payloadBound, contradictionWitness, tearBoundary, detachedMass, residualLane.","type":"definition"},{"name":"typeAdmissible","description":"Predicate: logogram has declared RRC shape, candidate witness status, and bounded payload.","type":"gate"},{"name":"hasTearRepair","description":"Predicate: torn logogram carries all four quarantine witnesses (contradictionWitness, tearBoundary, detachedMass, residualLane).","type":"gate"},{"name":"mergeAdmissible","description":"Predicate: typeAdmissible AND not a tearing regime — allows merge into ordinary route/tokenbook space.","type":"gate"},{"name":"projectionAdmissible","description":"Predicate: typeAdmissible AND (not torn OR hasTearRepair) — allows entry to projection space including quarantine.","type":"gate"},{"name":"Repaired Tear Projects","description":"Theorem: projectionAdmissible(semanticTearReceipt) = true — proved by native_decide.","type":"theorem"},{"name":"Repaired Tear Does Not Merge","description":"Theorem: mergeAdmissible(semanticTearReceipt) = false — proved by native_decide.","type":"theorem"},{"name":"Merge Implies Projection","description":"Theorem: mergeAdmissible(L) → projectionAdmissible(L).","type":"theorem"},{"name":"Repaired Tears Separate Projection From Merge","description":"Theorem: type-admissible torn logogram with repair evidence is projection-admissible but not merge-admissible.","type":"theorem"},{"name":"Quarantine Projection Lane","description":"Torn regimes route to quarantine_projection; non-torn to normal_projection.","type":"protocol"}],"tags":["RRC","logogram","projection","admission","quarantine","Lean","formal-verification"],"layer":"core-formalism","dependencies":["Rainbow Raccoon Compiler"],"summary":"Lean-checked formalism proving that torn logograms can be projection-admissible after repair while remaining not merge-admissible, establishing type != projection != merge admission."} +{"file":"docs/rrc_logogram_projection_bridge.md","title":"RRC Logogram Projection Bridge","concepts":[{"name":"LogogramProjection Bridge","description":"Python bridge that binds canonical cell hash, bounded glyph payload, substitution receipt, semantic regime, and RRC type witness into a LogogramProjection receipt.","type":"bridge"},{"name":"Projection Equation","description":"P_logogram(source) = (canonical_hash, cell_hash, glyph_payload_16, semantic_regime, substitution_receipt, rrc_type_witness).","type":"definition"},{"name":"Tear Repair Pipeline","description":"Flow: horrible_manifold_tearing → contradiction_witness_hash → tear_boundary_hash → detached_mass_id → semantic_boundary_residual → quarantine_projection → merge_admissible=false.","type":"protocol"},{"name":"RRC Shape LogogramProjection","description":"New lawful RRC shape with field equation: logogram_cell → canonical_hash → glyph_payload → projection_lane, admitted iff cell hash, payload bound, substitution receipt, and regime guard close.","type":"definition"}],"tags":["RRC","logogram","projection","bridge","receipt","Python"],"layer":"infrastructure","dependencies":["RRC Logogram Projection Formalism","Rainbow Raccoon Compiler"],"summary":"Executable bridge that projects logograms into RRC receipts with projection/merge admission gates and tear repair handling."} +{"file":"docs/rrc_equation_classification.md","title":"RRC Equation Projection","concepts":[{"name":"RRC Equation Projection","description":"Rainbow Raccoon Compiler projection pass over 278 local equation surfaces recording nearest lawful shapes, projection axes, and admissibility holds.","type":"algorithm"},{"name":"RRC Shape Distribution","description":"278 equations classified: CadForceProbeReceipt(2), CognitiveLoadField(77), HoldForUnlawfulOrUnderspecifiedShape(125), LogogramProjection(1), ProjectableGeometryTopology(37), SignalShapedRouteCompiler(36).","type":"receipt"},{"name":"Missing Axes","description":"scale_band_declared missing for 249/278 equations; negative_control_strength missing for 39.","type":"invariant"}],"tags":["RRC","equation-classification","admissibility","routing","projection"],"layer":"core-formalism","dependencies":["Rainbow Raccoon Compiler"],"summary":"Projection pass classifying 278 equations into RRC shapes with CANDIDATE/HOLD status; 249 equations missing scale_band_declared axis."} +{"file":"docs/rainbow_raccoon_compiler_integration.md","title":"Rainbow Raccoon Compiler Integration","concepts":[{"name":"Rainbow Raccoon Compiler (RRC)","description":"Manifold-indexed type-checker boundary: object → manifold projection → nearest lawful shape → type witness → field equation → invariant receipt.","type":"architecture"},{"name":"16-Axis Manifold Vector","description":"Projection axes: semantic_entropy, geometric_mass, compression_pressure, topology_torsion, receipt_density, field_energy, hardware_affinity, proof_readiness, residual_risk, shape_closure, history_depth, negative_control_strength, projection_declared, decoder_declared, witness_declared, scale_band_declared.","type":"definition"},{"name":"Lawful Shape Prototypes","description":"Initial set: SignalShapedRouteCompiler, ProjectableGeometryTopology, CognitiveLoadField, CadForceProbeReceipt, LogogramProjection, HoldForUnlawfulOrUnderspecifiedShape.","type":"definition"},{"name":"CANDIDATE Status","description":"Object has enough declared projection, witness, and scale evidence to be admissible for next-stage proving.","type":"gate"},{"name":"HOLD Status","description":"Object is underspecified or has weak receipt axes; not admissible for next stage.","type":"gate"},{"name":"Promotion Rules","description":"CANDIDATE is not a Lean proof; HOLD when projection/witness/decoder/residual/scale is weak; no promotion without replayable invariant receipt.","type":"protocol"}],"tags":["RRC","compiler","manifold","type-checking","integration"],"layer":"core-formalism","dependencies":[],"summary":"Integration shim implementing RRC as a manifold-indexed type-checker with 16-axis projection, 6 lawful shape prototypes, and CANDIDATE/HOLD admission."} +{"file":"docs/optional-science-toolbelt.md","title":"Optional Science Toolbelt","concepts":[{"name":"Optional Science Toolbelt","description":"Optional reference surfaces for math-first work including Biopython, Dedalus, liboqs-python, RDKit, Z3, SageMath, zstandard, PyWavelets — Lean remains source of truth.","type":"tool"},{"name":"probe_science_toolbelt.py","description":"Script to probe which optional domain tools are available; exits successfully even when tools are missing.","type":"tool"},{"name":"Receipt Pattern for Adapters","description":"Pattern: input fixture path → tool name/version → exact command → output hash + summary → link to Lean theorem or claim registry entry.","type":"pattern"}],"tags":["tooling","science","optional","bioinformatics","cryptography","formal-bridge","compression"],"layer":"infrastructure","dependencies":[],"summary":"Optional domain-specific tools (genetics, CFD, crypto, chemistry, formal bridge, algebra, compression) for math-first work; produces receipts not theorems."} +{"file":"docs/math-first-tooling.md","title":"Math-First Tooling","concepts":[{"name":"Math-First Contract","description":"Every mathematical claim must carry machine-checkable evidence — a Lean proof, a DeepSeek review receipt with SHA-256 integrity, or both.","type":"protocol"},{"name":"Claim Status Ladder","description":"States: conjecture → verified-by-ai → formally-proven → published. Movement only forward, each transition accompanied by claims.yaml change.","type":"gate"},{"name":"ollama_deepseek_review_receipt_v1","description":"Receipt schema requiring schema, created_at, model, endpoint, prompt_sha256, answer_sha256, usage, context_files, answer_path.","type":"spec"},{"name":"claims.yaml","description":"Single source of truth for mathematical claim rigor level with fields: id, title, status, lean, review_receipts, sources, notes.","type":"tool"},{"name":"require_math_evidence","description":"Pre-commit hook enforcing that commits touching math-track surfaces must also touch a math-evidence surface (receipt, Lean kernel, or claims.yaml).","type":"gate"},{"name":"MCP Servers for Math","description":"Registry: filesystem, sympy, wolfram-alpha, lean — AI assistants get tool access, not trust.","type":"tool"},{"name":"Receipt Validator","description":"validate_deepseek_receipts.py validates receipt schema compliance with SHA-256 hash pinning.","type":"tool"},{"name":"Claims Registry Validator","description":"validate_claims_registry.py enforces JSON Schema, unique IDs, and repo-relative path existence.","type":"tool"}],"tags":["math-first","claims","receipts","Lean","CI","pre-commit","MCP","verification"],"layer":"infrastructure","dependencies":[],"summary":"Codifies the math-first contract: every claim needs Lean proof or DeepSeek receipt; CI enforces via pre-commit hooks, validators, and MCP tool registry."} +{"file":"docs/compression_signal_shaping_synthesis.md","title":"Compression Signal-Shaping Synthesis","concepts":[{"name":"Signal-Shaped Route Compiler","description":"New pattern: shape the route space before coding, then pay exact residual, witness, decoder, and container bytes after coding.","type":"architecture"},{"name":"Phi Signal Feature Vector","description":"phi_signal(c) = [H(c), tag_density(c), DCT_energy(c), transient(c), autocorr(c), cosine_reuse(c)].","type":"definition"},{"name":"Route Selection Equation","description":"r* = argmin_r LB(r | phi_signal(c), semantic_regime(c), history_state).","type":"definition"},{"name":"Exact Cost Accounting","description":"C_total = bytes(payload) + bytes(sidecar) + bytes(residual) + bytes(decoder) + bytes(witness) + bytes(container).","type":"definition"},{"name":"Topology Regime Guard","description":"Classify as beautiful→fold, ugly→prune, horrible→isolate/hold before tokenbook merges.","type":"gate"},{"name":"Witness-Budgeted Latent Route","description":"Generative models propose routes; exact residual repairs; uncertainty decides hold.","type":"algorithm"},{"name":"Fractional History Route Scheduler","description":"h_t = sum K_alpha(t-tau) * residual_tau with bounded memory for nonstationary regions.","type":"algorithm"},{"name":"Negative Control Pattern","description":"valid_gain iff C(candidate) < C(baseline) AND C(candidate) < C(matched_bad_route).","type":"pattern"},{"name":"Promotion Gate","description":"Promote iff H(decode(r*)) == H(source) AND C_total < incumbent AND failure_rules == none.","type":"gate"}],"tags":["compression","signal-processing","route-compiler","topology","Hutter"],"layer":"core-formalism","dependencies":[],"summary":"Synthesis proposing signal-shaped route compilation experiments with exact cost accounting, topology regime guards, and negative controls; not a Hutter Prize result."} +{"file":"docs/WIKI.md","title":"Research Stack Wiki","concepts":[{"name":"Research Stack Architecture","description":"5-layer capability-adaptive compute fabric: Physical Network → Tailscale Mesh → Compute Surfaces → FrameDispatcher → VCN Pipeline → Ray Scheduler → Application Layer.","type":"architecture"},{"name":"Compute Tiers","description":"Device classification: GPU_CUDA(10), GPU_VAAPI(9), GPU_APU(8), CPU_FFMPEG(7), BATCH(6), ETHERNET(5), FRAMEBUFFER(4), WASM(3), DSP(2), ESP32(2), RELAY(1), OFFLINE(0).","type":"definition"},{"name":"VCN Pipeline","description":"5-stage video compute network: Delta+RLE → Reed-Solomon ECC → ChaCha20 → H.264 encode → MKV container; 50× bandwidth reduction.","type":"architecture"},{"name":"FrameDispatcher","description":"Tag-based frame router: TAG_STRAND/TAG_CROSSING/TAG_PIST → VCNBraidBackend, TAG_LUPINE → CUDABackend, TAG_VAAPI → VAAPIBackend, TAG_FLAC → FLACBackend.","type":"architecture"},{"name":"RayVCNBridge","description":"@ray.remote actor hosting FrameDispatcher with GPU+Braid backends; replaces Unix socket IPC + TCP transport + MKV encode/decode.","type":"tool"},{"name":"device_capability_probe.py","description":"Scans DRM render nodes, FFmpeg encoders, framebuffer devices, and network to classify devices into compute tiers.","type":"tool"},{"name":"PistPacket","description":"Ethernet computation protocol: structured compute packets via virtio-net TX/RX rings with Q16_16 fixed-point payload.","type":"protocol"},{"name":"Latency-Aware Scheduling","description":"Classes: LOCAL(<1ms), NEAR(<10ms), FAR(<100ms), DERP(<1s), OFFLINE(≥1s) with FPGA voltage mapping.","type":"algorithm"},{"name":"Q0_16 / Q16_16","description":"Fixed-point arithmetic foundation: Q0_16 (16-bit pure fraction, range [-1,1]) as default, Q16_16 (32-bit mixed) when range demands. No Float in compute paths.","type":"primitive"},{"name":"Tailscale Mesh","description":"WireGuard tunnels with direct P2P, DERP relay fallback, post-quantum Kyber768, MagicDNS, subnet routing.","type":"protocol"}],"tags":["architecture","wiki","VCN","Ray","Tailscale","compute-fabric","fixed-point","k3s"],"layer":"infrastructure","dependencies":[],"summary":"Comprehensive architecture wiki covering the 5-layer compute fabric, 12 compute tiers, VCN pipeline, Ray integration, device probing, and mesh networking."} +{"file":"docs/README.md","title":"docs/ README","concepts":[],"tags":["documentation","legacy"],"layer":"documentation","dependencies":[],"summary":"Legacy alias pointing to 6-Documentation/docs/ as the authoritative documentation tree."} +{"file":"docs/concepts/GAMMA_RADIX_METAPROBE.md","title":"Gamma Radix MetaProbe","concepts":[{"name":"Gamma Radix MetaProbe","description":"Symbolic, receipt-bearing pulse-tracing architecture using gamma-length transmission as radix metaphor for ultra-fine address/probe space with WebGPU/PIST surfaces and FAMM/NUVMAP witness routing.","type":"architecture"},{"name":"Gamma Packet Primitive","description":"Gamma_i = gamma_i ⊗ chi_i ⊗ kappa_i ⊗ tau_i ⊗ U_i Lambda_i a_i ⊗ theta_i ⊗ epsilon_i — energy, chirality, interaction kernel, delay, spectral decomposition, routing angle, residual scar.","type":"definition"},{"name":"Radix Basis","description":"R_Gamma = {E, theta, phi, t, chi, kappa, rho, sigma, epsilon} — multi-axis pulse-state basis for addressing.","type":"definition"},{"name":"Settlement Avoidance","description":"Savings from replacing full execution+storage+commit with probe+witness+selective export.","type":"pattern"},{"name":"Sparse Residual Transmission","description":"Transmit generator + route witness + residual repair instead of full state.","type":"pattern"},{"name":"Cacheable Probe Fields","description":"Same packet class + same boundary condition → reuse prior branch witness.","type":"pattern"},{"name":"Compute Triage","description":"Low residual→accept/cache/compress, medium→refine locally, high→route to FAMM scar/reject/quarantine, impossible→NaN/no commit.","type":"algorithm"}],"tags":["metaprobe","gamma-radix","probe","WebGPU","FAMM","NUVMAP","BraidStorm","symbolic"],"layer":"core-formalism","dependencies":["FAMM","NUVMAP","BraidStorm"],"summary":"Symbolic pulse-tracing architecture where gamma-scale coordinates are virtual probe names, not physical RAM; savings come from cheap probes replacing committed computation."} +{"file":"docs/architecture/RAINBOW_RACCOON_FAMM_NUVMAP_MANUAL_2026_05_20.md","title":"Rainbow Raccoon / FAMM / NUVMAP Architecture Manual","concepts":[{"name":"Core Keeper Equation","description":"D_hat = V ∘ R ∘ L ∘ E_AttnRes ∘ C ∘ B ∘ N ∘ RRC ∘ Gamma ∘ S(D) — full reconstruction pipeline from static astro computer through verification.","type":"definition"},{"name":"Admissible Reconstruction Topology","description":"The primitive is not storage but admissible reconstruction topology with selective residual memory.","type":"definition"},{"name":"RRC Manifold Typing","description":"RRC(D) = (M_k, Lambda_k, Phi_k, chi_k, epsilon_k, M_semantic) — determines which transforms are lawful, which braid routes are admissible.","type":"definition"},{"name":"NUVMAP Sparse Projection","description":"Sparse topological address space: nu_i = (r_i, chi_i, sigma_i, q_i, h_i); millions of candidates collapse into sparse occupied regions.","type":"definition"},{"name":"BraidStorm Traversal","description":"B(D) = sum_i beta_i where crossings represent reconstruction operations.","type":"definition"},{"name":"Eigensolid","description":"E* = Closure(sum_i R_i) — stable, replayable, low residual, admissible, closure-preserving reconstruction body.","type":"definition"},{"name":"Logogram Alphabet","description":"Callable reconstruction glyphs organized as field (rho, Omega, mu, Phi), carrier (Gamma, chi, kappa, tau, Lambda, epsilon), traversal (beta, R, E*, otimes), repair (Delta, oplus, r), verification (V, H, equivalence) glyphs.","type":"definition"},{"name":"Residual Repair","description":"D_exact = D_approx ⊕ Delta — approximate lawful replay first, exactness restored afterward.","type":"algorithm"},{"name":"FAMM Scar Memory","description":"FAMM stores prior traversal and obstruction experience; a scar is a remembered overlap obstruction.","type":"definition"},{"name":"Attention Residuals Fold-In","description":"E_AttnRes = Closure(sum_i softmax(M_i - Omega_i + S_i) R_i) — selective residual retrieval from Kimi Team arXiv:2603.15031.","type":"algorithm"},{"name":"Inclusion-Exclusion Fold-In","description":"M(E*) = sum M(R_i) - sum overlap(R_i,R_j) + higher-order closure corrections.","type":"algorithm"}],"tags":["architecture","RRC","FAMM","NUVMAP","BraidStorm","eigensolid","logogram","compression"],"layer":"core-formalism","dependencies":["Rainbow Raccoon Compiler","FAMM","NUVMAP","BraidStorm"],"summary":"Architecture manual defining the full reconstruction pipeline D_hat = V∘R∘L∘E_AttnRes∘C∘B∘N∘RRC∘Gamma∘S(D) with compression as lawful manifold replay + residual exactness + selective memory."} +{"file":"docs/speculative-materials/PhotonChasedFerriteTraceFormation.md","title":"Photon-Chased Ferrite Trace Formation","concepts":[{"name":"Photon-Chased Ferrite Trace","description":"Speculative materials concept: use moving electromagnetic activation front to bias redox mineralization along confined channel wall, leaving near-aligned ferrite-like traces.","type":"primitive"},{"name":"Seven-Pattern Mapping","description":"Maps to CHAIN (wall prep → redox leak → activation front → deposition → cleanup → finish), COUPLING, GRADIENT, FEEDBACK, MASS, ENTROPY, SCALING.","type":"pattern"},{"name":"Primary Observable","description":"Anisotropy: sigma_parallel / sigma_perpendicular > 1 — directional transport evidence.","type":"invariant"}],"tags":["speculative","materials","ferrite","electromagnetic","redox","anisotropy"],"layer":"speculative","dependencies":[],"summary":"Speculative materials hypothesis: guided activation field pulls redox-mineralization front down confined channel, leaving aligned ferrite traces; grant-proposal-scale implementation."} +{"file":"docs/roadmaps/RESEARCH_STACK_FOREST_MAP_WATERFALL.md","title":"Research Stack Forest Map Waterfall","concepts":[{"name":"Forest Map Authority Model","description":"Epistemic pipeline: artifact → normalization → fingerprint → graph/equation extraction → candidate roads → authority gate → Graph.lean audit → diff/torsion/curvature → FAMM basin-hold-scar → projections.","type":"architecture"},{"name":"Authority Hierarchy","description":"Graph.lean (canonical graph) > ENE (provenance) > Notion (semantic registry) > Obsidian (workbench) > Neo4j (topology engine) > GraphML/Mermaid/Ace (transport/projection).","type":"definition"},{"name":"Canonical Node Taxonomy","description":"Node types: Artifact, Equation, Variable, Domain, Road, Motif, Source, LightSourceFrame, GraphSnapshot, Route, FAMMState, AuthorityBoundary.","type":"definition"},{"name":"Canonical Edge Taxonomy","description":"Edge types: NORMALIZES_TO, HAS_FINGERPRINT, ROUTES_TO, WRITES_MEMORY, CONTAINS_EQUATION, USES_VARIABLE, SHARES_MOTIF, DERIVES_FROM, CONSTRAINS, PROJECTS_TO, TRANSPORTS_TO, ILLUMINATES, HAS_TORSION, HAS_OUTCOME.","type":"definition"},{"name":"False-Attractor Gates","description":"Gates: operator-context, domain-context, perturbation test, randomized baseline, source-independence check, authority gate.","type":"gate"},{"name":"Torsion Heatmap Categories","description":"Low torsion/repeated→basin candidate, moderate/context→frontier hold, high/repeated→scar candidate, zero-response→degenerate flat.","type":"definition"},{"name":"COUCH Coupling Degeneracy","description":"Problem: identical curvature across kappa regimes implies coupling term or curvature metric not responding to kappa.","type":"invariant"}],"tags":["roadmap","forest-map","authority","Graph.lean","FAMM","torsion","equation-packs"],"layer":"documentation","dependencies":["FAMM","Graph.lean","NUVMAP"],"summary":"9-phase roadmap for completing the Research Stack forest map: authority plumbing, equation inventory, numeric motifs, COUCH fix, basin extraction, torsion heatmap, light sources, Neo4j traversal, closure criteria."} +{"file":"docs/research/VLB_NIBBLE_DELTA_WITNESS_SUBSTRATE_ESTIMATE.md","title":"VLB Nibble-Delta Witness Substrate — Earthside Estimate","concepts":[{"name":"Nibble-Switched Manifold Delta","description":"Encoding updates as sparse counted 4-bit switch events rather than full snapshots; baseline committed once, then sparse counted nibble switches with witness receipt.","type":"algorithm"},{"name":"NibbleSwitch","description":"Structure: locusId, nibble (UInt4), count (run length), polarity (signed Q16), kotCost (signed Q16), receiptId.","type":"definition"},{"name":"ManifoldDelta","description":"Structure: baselineHash, targetHash, sourceDomain, switches[], deltaGCCL, kotCost, replayPass.","type":"definition"},{"name":"Nibble Semantics","description":"High 2 bits = quandary control (00=REJECT, 01=ACCEPT, 10=HOLD, 11=QUARANTINE); low 2 bits = strand selector (00=K/stable, 01=C/winding, 10=M/tension, 11=Y/break).","type":"definition"},{"name":"Compression Estimate","description":"Gain ≈ (N×B) / ((N×r/c)×E + overhead); practical 5×-20× near-term, 25×-100× with good sparsity, 100×+ for telemetry streams.","type":"algorithm"},{"name":"GCCL Integration","description":"Delta valid only when transition is smaller AND lawful; profiles G_geo, G_comp, G_load, G_spec, G_topo, G_arith, G_MNL, G_AMN.","type":"protocol"}],"tags":["compression","nibble-delta","GCCL","witness","manifold","telemetry","ENE"],"layer":"infrastructure","dependencies":["GCCL","NUVMAP","AMMR"],"summary":"Earthside estimate for nibble-switched manifold delta encoding: 5×-20× near-term gain for repo/document/ENE update streams, with every update small, replayable, witnessed, budgeted, quarantinable."} +{"file":"docs/research/OPENAI_UNIT_DISTANCE_FAMM_GUIDE_2026_05_20.md","title":"OpenAI Unit-Distance Disproof as FAMM Solve Pattern","concepts":[{"name":"Cross-Domain Structural Route","description":"Key lesson: cross-domain structural routes can dominate local intuition; the winning proof route existed outside the community-default search basin.","type":"pattern"},{"name":"FAMM Solved-Scar Pattern","description":"OpenAI's unit-distance counterexample as canonical solved-scar: conjecture→obstruction field, counterexample family→braid/eigensolid family, algebraic route→remote NUVMAP sector.","type":"pattern"},{"name":"Attention Residuals Interpretation","description":"Successful route behaved as distant off-diagonal retrieval, not local next-step continuation; softmax-selected remote retrieval may outperform dense local accumulation.","type":"insight"},{"name":"Eigensolid Ranking","description":"Prioritize reusable construction families, scalable symmetry structures, infinite admissible replay over finite examples.","type":"algorithm"}],"tags":["FAMM","Erdős","unit-distance","cross-domain","attention-residuals","NUVMAP","eigensolid"],"layer":"research","dependencies":["FAMM","NUVMAP","BraidStorm"],"summary":"Interprets OpenAI's unit-distance disproof as a FAMM solved-scar pattern: low-obstruction proof manifold existed outside dominant search basin, supporting selective residual retrieval."} +{"file":"docs/research/KOTC_COMPLETION_DAEMON.md","title":"KOTC — Kinetic Operation Token Completion Daemon","concepts":[{"name":"KOTC","description":"Bounded microLLM-style completion daemon treating code completion as auditable compiler operation: request → context → candidate → policy checks → KOT debit → receipt → ACCEPT/REJECT/HOLD/QUARANTINE.","type":"tool"},{"name":"Completion Modes","description":"DRAFT (exploratory scaffold), REPAIR (compiler-error repair), STRICT (core-safe, no floats, no theorem weakening).","type":"definition"},{"name":"Hard Policy Checks","description":"no_float_hot_path, no_unreviewed_physical_claim, no_theorem_weakening, no_unchecked_invariant_introduction, no_unbudgeted_compiler_pass, no_authority_escalation, no_silent_receipt_drop, no_unbounded_recursion.","type":"gate"},{"name":"Quandary Decision States","description":"ACCEPT (passed policy, may stage), REJECT (invalid/irrelevant), HOLD (plausible, needs witness), QUARANTINE (violates policy or unsafe drift).","type":"definition"},{"name":"KOT Receipt","description":"JSON receipt: receipt_type, completion_id, mode, target_module, context_files, symbol_refs, kot_cost_q16, risk, decision, policy_checks, candidate_hash, notes.","type":"receipt"}],"tags":["KOTC","completion","code-assistant","KOT","policy","receipt","OTOM"],"layer":"infrastructure","dependencies":["KOT","OTOM Galaxy Compiler"],"summary":"Bounded completion daemon where every suggestion pays KOT, passes policy checks, and emits a receipt before becoming code; not an authority source."} +{"file":"docs/research/GCCL_THEORY_INTRO.md","title":"Introduction to GCCL Theory","concepts":[{"name":"GCCL (Geometric, Cognitive, and Compression Law)","description":"Receipt-bounded framework for validating transformations of structured information across geometry, meaning, and representation; every transition must declare state space, projection, invariants, residual, cost, scale band, and receipt.","type":"definition"},{"name":"UMUP-λ / Invariant Receipt Protocol","description":"Universal model wrapper M = (S, T, I, R, K, P, Q, Λ) — state space, transforms, invariants, residual, cost, projection, quarantine, scale band.","type":"definition"},{"name":"ΔφγKλ","description":"Compression-domain specialization: Δ=residual, φ=invariant preserved, γ=transform pressure, K=cost paid/KOT accounting, λ=scale band.","type":"definition"},{"name":"GCCL-Rep","description":"Transport representation for GCCL transitions: compact representative of a transition class under declared codec, baseline, scale band, and receipt policy.","type":"definition"},{"name":"GCLang","description":"Executable/compiler-facing language layer implementing GCCL passes, gates, receipts, model genomes, KOT costs, invariants, projections, quarantine branches.","type":"definition"},{"name":"Bounded Lawful Surface","description":"BLS(GCCL, B, I, R, K, Λ) — the set of transitions expressible, replayable, checkable, budgeted, and receipted under declared constraints.","type":"definition"},{"name":"Promotion Ladder","description":"RAW_IDEA → SANITIZED_METAPHOR → TOY_MODEL → TYPED_MODEL → RESIDUAL_TESTED → COST_ACCOUNTED → PROOF_CANDIDATE → CORE_MODULE.","type":"gate"},{"name":"Layered Mountain Model","description":"NUVMAP=projection/address, AVMR=vector-state evolution, AMMR=commit/history, O-AMMR=orthogonal/QR-basis, GCCL-Rep=compact transition rope between mountains.","type":"architecture"},{"name":"Goxel","description":"N-space shape inhabiting geometric volume, expressed as bounded scalar sub-manifold; G = {v in R^n : Phi_G(v) <= iso}.","type":"definition"},{"name":"KOT (Kinetic Operation Token)","description":"Accounting layer for action cost: every transformation pays, every payment leaves a trace.","type":"definition"},{"name":"Model Genome","description":"Compact generative encoding of model/transform family: codon → gene → chromosome/module → genome/model family → phenotype/artifact.","type":"definition"},{"name":"GCCL Failure Modes","description":"False unification, projection laundering, compression laundering, metaphor drift, silent loss, scale abuse, cost smuggling, receipt laundering, theorem weakening, unbounded expression.","type":"invariant"}],"tags":["GCCL","theory","framework","receipt-bounded","transformation","compression","cognition","geometry"],"layer":"core-formalism","dependencies":["KOT","NUVMAP","AMMR","AVMR","O-AMMR"],"summary":"Comprehensive theory introduction for GCCL: receipt-bounded law stack where every transformation must declare what changed, survived, was lost, cost, and why valid at claimed scale."} +{"file":"docs/research/GCCL_GENETIC_INFORMATION_MIXTURE_PRIMITIVES.md","title":"GCCL Genetic Information Mixture Primitives","concepts":[{"name":"Mixture Primitive","description":"Coding family admissible in GCCL model genome only when it declares alphabet, arity, direction, ambiguity, transform rules, residual, cost, receipt.","type":"definition"},{"name":"Genetic Alphabet Primitives","description":"DNA(A,C,G,T), RNA(A,C,G,U), complement encoding, purine/pyrimidine class, strong/weak class, gap symbol, unknown symbol, modified base.","type":"primitive"},{"name":"Codon Translation Primitives","description":"Standard codon table, alternative genetic codes, start/stop codon logic, degenerate codon family, synonymous codon usage, reading frame, frameshift.","type":"primitive"},{"name":"Ambiguity Primitives","description":"IUPAC DNA/RNA ambiguity, amino acid ambiguity, degenerate codon notation, wildcard, consensus sequence, profile column, position weight matrix, hidden-state emission.","type":"primitive"},{"name":"Alignment/Assembly Primitives","description":"Pairwise/multiple alignment, CIGAR string, edit script, k-mer, minimizer, de Bruijn graph, string graph, pangenome graph, variation graph, synteny block.","type":"primitive"},{"name":"Compression Primitives","description":"Run-length encoding, Huffman coding, arithmetic coding, BWT, FM-index, suffix array/tree, minimizer index, reference-based compression, Bloom filter, MinHash.","type":"primitive"},{"name":"GCCL-Native Model Genome Primitives","description":"Model codon, gene, chromosome, genome, promoter/suppressor gate, intron/exon region, mutation/crossover/inversion operator, codon-usage pressure, phenotype, fitness.","type":"primitive"},{"name":"Mixture Rules","description":"7 rules: declare active alphabet, declare projection, declare ambiguity, keep biological/GCCL-native separate, every mixture pays KOT, every mixture has residual, every mixture has quarantine path.","type":"gate"}],"tags":["GCCL","genetics","mixture-primitives","bioinformatics","codon","alignment","compression","model-genome"],"layer":"core-formalism","dependencies":["GCCL"],"summary":"Taxonomy of genetic information coding families available as GCCL mixture primitives: alphabets, codons, ambiguities, alignments, variants, regulatory marks, structural graphs, compression indexes, model-genome analogs."} +{"file":"docs/research/ERDOS_FAMM_EIGENSOLID_NOTES_2026_05_20.md","title":"Erdős FAMM / Eigensolid Research Notes","concepts":[{"name":"Erdős Eigensolid Pipeline","description":"solved/scar packets → NUVMAP projection → braid traversal → chirality filtering → rope aggregation → eigensolid closure → exact receipt verification.","type":"algorithm"},{"name":"Color Taxonomy","description":"Green=core exact receipt spine, Blue=active zero-residual reserve, Cyan=wide-alpha cold reserve, Slate=large-alpha cold reserve, Amber=failed gate/negative scar only.","type":"definition"},{"name":"Eigensolid Families","description":"Leaf (exact residue-alpha), Residue (collapse by residue class), Alpha (cross-residue families), Phase (chirality/phase closure), Global (run-now admissible closure body).","type":"definition"},{"name":"Alpha Family Collapse","description":"Useful alpha family {3,7,11,15,19,23} with expanded rescue {27,31,35,39,43,47,51,55,59}; swarm collapses from millions to fixed-alpha divisor-residue channels.","type":"algorithm"},{"name":"Structural Collapse","description":"For fixed alpha: x=(p+alpha)/4, b=px, need e|b² and e≡-b(mod alpha), then y=(b²/e+b)/alpha, z=(e+b)/alpha.","type":"definition"}],"tags":["Erdős","FAMM","eigensolid","braid","NUVMAP","number-theory"],"layer":"research","dependencies":["FAMM","NUVMAP","BraidStorm"],"summary":"Research notes treating solved Erdős structures as FAMM scar priors using NUVMAP projection, braid aggregation, rope collapse, and eigensolid closure to reduce combinatorial explosion."} +{"file":"docs/famm/FAMM_Stigmergic_Route_Memory.md","title":"FAMM — Stigmergic Route Memory","concepts":[{"name":"FAMM (Frustration-Aligned Memory Management)","description":"Route memory that records successes, failures, partial traversals, torsion, basins, and phase deltas so future search is biased away from bad routes and toward lawful attractors.","type":"definition"},{"name":"Stigmergic Bridge","description":"Computational analogue of slime-trail memory: route traversal → trace/scar → basin or frustration signal → biased future search.","type":"bridge"},{"name":"FAMM vs AMMR/AVMR","description":"AMMR=auditable append-only history, AVMR=hierarchical vector-state accumulation, FAMM=frustration-aligned routing bias from prior traversal outcomes.","type":"definition"},{"name":"FAMM Load","description":"L_famm = Sigma² + I_lock + Delta_phi (torsional stress + interlocking energy + phase delta); implemented as FAMMTiming structure in Lean.","type":"definition"},{"name":"FAMM Scheduling","description":"Scheduler asks: has route failed before? partially worked? produced torsion? landed in stable basin? created downstream regret? lower frustration alternative?","type":"algorithm"},{"name":"Seven-Pattern FAMM Mapping","description":"CHAIN (attempt→outcome→scar→decision), FEEDBACK, GRADIENT (frustration basins), MASS (scars/basins/regret), ENTROPY, COUPLING, SCALING.","type":"pattern"}],"tags":["FAMM","stigmergy","route-memory","frustration","basin","scar","scheduling"],"layer":"core-formalism","dependencies":[],"summary":"FAMM as frustration-aligned route memory using stigmergic traces (scars becoming navigation) to bias future search; distinct from AMMR (history) and AVMR (vector accumulation)."} +{"file":"shared-data/artifacts/claim_cross_reference_report_2026-05-21.md","title":"Claim Cross-Reference Report: Attack CSVs vs. Research Stack Repo","concepts":[{"name":"Claim Cross-Reference Audit","description":"Systematic grep-based cross-reference of external attack CSVs against repo evidence, classifying claims as DEFENDED, ORPHANED, RENAMED, or UNEXPECTED_CONNECTION.","type":"receipt"},{"name":"Sidon Addressing","description":"Genuinely novel concept confirmed by attack and implemented in Rust + Python + Lean; the one concept the attack calls 'genuinely new'.","type":"primitive"},{"name":"Epistemic Tags","description":"Repo self-correction mechanism: PRIOR ART, PROJECT DATA, INFERENCE, SPECULATIVE labels on claims.","type":"gate"},{"name":"Attack Mischaracterization Pattern","description":"Attack reads conversational genre (user-requested analogies, what-if hypotheticals) as scientific claims; assistant consistently grounded in computation with explicit warnings.","type":"pattern"}],"tags":["audit","adversarial","cross-reference","self-correction","epistemic"],"layer":"documentation","dependencies":[],"summary":"Cross-referencing external attack CSVs against repo evidence: 5 defended, 2 orphaned, 1 renamed in sample set; attack is directionally correct but mischaracterizes conversational genre."} +{"file":"shared-data/artifacts/lean_expert_agent/qc_report_2026-05-13.md","title":"QC Report — Physics/ Code Structure & Efficiency","concepts":[{"name":"Lean QC Report","description":"Quality control report identifying 4 high-priority (absDiff duplication 4x, scale=65536 duplication 6x, duplicate theorems, dead q16_div), 5 medium, 5 low issues across 8 physics Lean files.","type":"receipt"}],"tags":["QC","Lean","code-quality","duplication","dead-code"],"layer":"core-formalism","dependencies":[],"summary":"QC report finding 14 issues (4 high, 5 medium, 5 low) in physics Lean files; all 8 files build cleanly with 3529 jobs, no circular dependencies."} +{"file":"shared-data/artifacts/lean_expert_agent/AGENTS.md","title":"Lean Expert Agent — AGENTS.md","concepts":[{"name":"Lean Expert Agent","description":"Agent contract for inspecting Lean 4 code: structural health (theorem/def/sorry/native_decide counts), naming conventions, Q0_16/Q16_16 compliance, proof quality, dependency analysis.","type":"protocol"},{"name":"DAG Receipt","description":"Output format: File, Date, Pass (true/false), Issues count with file:line references and severity levels.","type":"receipt"}],"tags":["agent","Lean","inspection","QC","contract"],"layer":"infrastructure","dependencies":[],"summary":"Agent contract for Lean code inspection covering structural health, naming, fixed-point compliance, proof quality, and dependency analysis with DAG receipt output."} +{"file":"shared-data/artifacts/adversarial_review/FULL_ADVERSARIAL_REVIEW_2026-05-31.md","title":"FULL ADVERSARIAL REVIEW — Research Stack","concepts":[{"name":"Adversarial Review","description":"8 parallel adversarial reviewers scanning ~35,000 source files finding 248 total issues: 51 CRITICAL, 76 HIGH, 80 MEDIUM, 41 LOW across Lean, Python, Rust, Verilog, WGSL, TypeScript, Shell.","type":"receipt"},{"name":"Q16_16 Multiply Bug","description":"Verilog q16_lut_core.v:46 — a_reg * b_reg produces Q32.0 not Q16.16; missing >>16 shift; every hardware computation off by 2^16.","type":"invariant"},{"name":"SHA-256 Padding Bug","description":"Verilog cff_accelerator.v:222 — only 62 bits assigned instead of 64-bit big-endian bit count; all hardware hashes incorrect.","type":"invariant"},{"name":"WGSL Data Races","description":"Pervasive non-atomic += on shared storage buffers from multiple workgroups; all GPU compute results non-deterministic.","type":"invariant"},{"name":"Rust Double-Free","description":"teleport-kanban/src/thermodynamic.rs:484 — Arc::from_raw on Arc::as_ptr pointer steals reference count; exploitable memory corruption.","type":"invariant"},{"name":"Credential Exposure","description":"8 files with hardcoded passwords, IPs, tokens including root password over HTTP on public IP.","type":"invariant"},{"name":"942 ofFloat Violations","description":"Systemic violation of AGENTS.md 'no Float in compute paths' mandate across 100+ Lean files.","type":"invariant"},{"name":"Tautological Eigensolid Convergence","description":"BraidEigensolid.lean:171-175 — proof is h_eig (hypothesis IS conclusion); no actual convergence proven.","type":"invariant"}],"tags":["adversarial","security","correctness","Lean","Verilog","WGSL","Rust","Python","audit"],"layer":"documentation","dependencies":[],"summary":"Comprehensive adversarial review finding 248 issues across ~35,000 files; top critical: Verilog Q16_16 multiply wrong, SHA-256 padding wrong, WGSL data races, Rust double-free, credential exposure, 942 ofFloat violations."} +{"file":"shared-data/artifacts/deepseek_review/prime_gap_entropy_collapse_deepseek_deepseek-v4-flash_continuation_20260512T033849Z.md","title":"Prime Gap Entropy Collapse — DeepSeek v4-flash Continuation","concepts":[{"name":"Prime Gap Review Caveats","description":"10 caveats: no ground truth for prime gaps, parameter sensitivity, edge effects, reproducibility requirements, interpretation caveat about false positives.","type":"receipt"}],"tags":["prime-gap","entropy-collapse","statistical-review","DeepSeek"],"layer":"research","dependencies":[],"summary":"Continuation review listing caveats for prime-gap entropy-collapse detection: no ground truth, parameter sensitivity, edge effects, reproducibility requirements."} +{"file":"shared-data/artifacts/adversarial_review/adversarial_semantics_review_2026-05-31.md","title":"Adversarial Review: Semantics Lean Codebase","concepts":[{"name":"QFactor Double-Scaling Bug","description":"QFactor.lean:57 — ofNat 65536 creates Q16_16 with raw 4294967296 which saturates to q16MaxRaw; numerator always multiplied by ~32768 instead of 65536.","type":"invariant"},{"name":"sub_eq_add_neg Admitted","description":"FixedPoint.lean:722 — known false at q16MinRaw because neg overflows; exported and usable by downstream modules.","type":"invariant"},{"name":"abs_mul_le Admitted","description":"FixedPoint.lean:778 — unconditionally false; SSMS ACI theorem depends on it.","type":"invariant"},{"name":"abs_triangle Admitted","description":"FixedPoint.lean:788 — false in general; downstream modules can derive False.","type":"invariant"},{"name":"Division by Zero Asymmetry","description":"AVM.lean:99-103 — Q16_16 div by 0 returns infinity (maxVal), Int div by 0 is silent no-op; divergent behavior by type.","type":"invariant"},{"name":"Tautological Convergence","description":"BraidEigensolid.lean:171-175 — proof is h_eig (hypothesis IS conclusion); does not prove crossStep actually converges.","type":"invariant"},{"name":"Sidon Slack Underflow","description":"BraidEigensolid.lean:127 — if slot > 128, UInt32 subtraction wraps; no precondition ensures slot ≤ 128.","type":"invariant"},{"name":"CERNEigensolidData Spurious Axioms","description":"9 axioms asserting True — trivially provable, serve no logical purpose, create appearance of formalized physics constraints (provenance theater).","type":"invariant"},{"name":"AVMIsa Missing Primitives","description":"Prim.addSatQ16 and subSatQ16 declared but not implemented in evalPrim; always return typeMismatch error.","type":"invariant"},{"name":"Q16_16 Constants via ofFloat","description":"pi, e, ln2, sqrt2 defined via ofFloat causing 1 LSB error; should use ofRatio.","type":"invariant"},{"name":"FixedPoint.lean False Theorems","description":"Three admitted theorems (sub_eq_add_neg, abs_mul_le, abs_triangle) known false; SSMS ACI depends on them; entire proof database inconsistent.","type":"invariant"},{"name":"ofFloat Proliferation","description":"942 ofFloat calls violate AGENTS.md mandate; codebase not deterministic across platforms.","type":"invariant"}],"tags":["adversarial","Lean","Semantics","proof-integrity","Q16_16","bugs","security"],"layer":"core-formalism","dependencies":[],"summary":"Deep adversarial review of Semantics Lean codebase: 7 CRITICAL (QFactor double-scaling, false theorems, division asymmetry, 942 ofFloat), 12 HIGH (tautological convergence, missing primitives, spurious axioms), 18 MEDIUM, 9 LOW."} +{"file":"shared-data/artifacts/deepseek_review/prime_gap_entropy_collapse_deepseek_deepseek-v3.2_20260512T033551Z.md","title":"Prime Gap Entropy Collapse — DeepSeek v3.2 Review","concepts":[{"name":"K=7 Threshold Invalid","description":"FPR ≈94.57% under random-permutation null; K=7 is non-selective heuristic.","type":"invariant"},{"name":"K=21 Corrected Threshold","description":"Strict >21: 3.05% FPR; inclusive >=21: 5.43% FPR; calibrated to ~5% FPR under random-permutation null.","type":"definition"},{"name":"Prime Gap Signal Attenuation","description":"Original >7: 86,565 fires (8.66%); corrected >21: 38 fires (0.0038%); surviving windows are rare candidate motifs, not general phenomenon.","type":"receipt"},{"name":"Permutation Null Mismatch","description":"Prime gaps violate random-permutation null due to ties, non-uniform marginal distribution, local dependence; permutation-based FPRs not applicable.","type":"invariant"},{"name":"Fusion Rule","description":"braid(t→t+1) AND sigma_q(t+1) AND D_q(t+1) correctly targets turbulent transition into collapsed arrival window.","type":"algorithm"}],"tags":["prime-gap","statistical-review","entropy-collapse","FPR","permutation-test","DeepSeek"],"layer":"research","dependencies":[],"summary":"DeepSeek review confirming K=7 is non-selective (94.57% FPR), K=21 is defensible (~5% FPR), prime-gap signal survives but severely attenuated (38 fires vs 86,565); permutation null inappropriate for prime gaps."} +{"file":"e2e/E2E_MASTER_RECEIPT.md","title":"E2E MASTER RECEIPT — End-to-End Trace for E = mc²","concepts":[{"name":"E2E Master Trace","description":"Complete end-to-end trace of E=mc² through 8 steps: EquationShape parsing → Sidon address → Chaos game → Finsler metric → QUBO encoding → QAOA circuit → Hachimoji decoding → Receipt hash.","type":"receipt"},{"name":"EquationShape","description":"⟨n_vars=3, n_ops=2, max_depth=1, n_quantifiers=0, n_relations=1⟩ for E=mc².","type":"definition"},{"name":"Sidon Address","description":"[4,16,16,1,16,1,16,8] — canonical spectral fingerprint of E=mc² using Sidon set {1,2,4,8,16,32,64,128}.","type":"definition"},{"name":"Chaos Game Basin Convergence","description":"Deterministic Sidon-guided chaos game with α=0.5 contraction; converges to q_braid basin in 1390 steps.","type":"algorithm"},{"name":"Finsler Metric Construction","description":"F = α(Fisher) + β(torsion drift) — Randers metric with α=0.4167 base cost and β=0.1500 drift strength.","type":"definition"},{"name":"QUBO Encoding","description":"8 binary variables (Φ,Λ,Ρ,Κ,Ω,Σ,Π,Ζ), 36 couplings; diagonal α costs from Finsler metric, off-diagonal β drift antisymmetric.","type":"definition"},{"name":"QAOA Circuit","description":"p=2 layers, 8 qubits, cost Hamiltonian H_C, mixer H_M; approximation ratio >0.95; ground state [1,0,0,0,0,0,0,0].","type":"algorithm"},{"name":"Hachimoji State Φ","description":"Phase 0°, beautifulTopologicalFolding regime, ambidextrous chirality, forward direction — correct for E=mc² (above φ_GCP, zero contradictions, ordered basin).","type":"definition"},{"name":"Merkle Receipt Tree","description":"SHA-256 hash of all 8 step witnesses; any change to any witness invalidates receipt.","type":"receipt"},{"name":"Chentsov Uniqueness","description":"Fisher information metric is unique Riemannian metric on 8-state Hachimoji probability simplex (proven in ChentsovFinite.lean).","type":"theorem"}],"tags":["e2e","E=mc2","Sidon","chaos-game","Finsler","QUBO","QAOA","Hachimoji","receipt","Lean"],"layer":"application","dependencies":["Sidon Sets","Transport Theory","Hachimoji Substitution","BinnedFormalizations","EquationFractalEncoding"],"summary":"Complete 8-step E2E trace of E=mc² from LaTeX through formal verification, geometric search, quantum optimization, and Hachimoji decoding; 3 PROVEN, 3 COMPUTED, 2 STATED with sorry."} +{"file":"library/CONCEPTUAL_UPGRADE_RECEIPT.md","title":"Conceptual Upgrade Receipt — Operator-Theoretic Hachimoji Codec V2","concepts":[{"name":"HachimojiState4D","description":"4-dimensional state descriptor: (Phase, Chirality, Direction, Regime) — 144 possible 4-tuples, only 8 canonical satisfying all 6 consistency rules.","type":"definition"},{"name":"Consistency Invariant","description":"6 rules: Phase-Direction, Axis-Chirality, Beautiful Phase Range, Horrible Phase Range, Left Chirality-Direction, Regime Half-Plane.","type":"invariant"},{"name":"consistency_error_bound Theorem","description":"¬consistencyInvariant(s) → admission(s,shape) = QUARANTINE — deterministic structural guarantee replacing statistical reasoning.","type":"theorem"},{"name":"Counterexample Detector","description":"Detects old pipeline failure modes: DEGENERATE_PROJECTION, EMPTY_EIGENSPACE, NO_SPECTRAL_STRUCTURE, SAMPLING_NON_TERMINATION, BASE_RATE_LEAKAGE.","type":"tool"},{"name":"Operator C Pipeline","description":"C: Equation → EquationShape → HachimojiState4D → ConsistencyCheck → Admission — deterministic, no sampling, no randomness.","type":"algorithm"},{"name":"Old Pipeline Failure","description":"E∘S pipeline's 92.5% 'purity' was base-rate leakage, not eigenspace recovery; Fiedler vector near center of eigenspace distribution.","type":"invariant"}],"tags":["Hachimoji","codec","operator-theoretic","consistency","Lean","formal-verification"],"layer":"application","dependencies":["ChentsovFinite"],"summary":"V2 Hachimoji codec upgrade from single-dimension regime classifier to 4D state descriptor with deterministic structural guarantee replacing statistical illusion."} +{"file":"library/codec_receipt.md","title":"Hachimoji Codec — Library Receipt","concepts":[{"name":"Hachimoji Codec Pipeline","description":"5-stage pipeline: parse_equation → classify_hachimoji → build_receipt → admit_receipt → emit_stamped; fully deterministic.","type":"algorithm"},{"name":"EquationShape","description":"Structure: n_vars, n_ops, max_depth, n_quantifiers, n_relations — extracted by tokenizing equation string.","type":"definition"},{"name":"HachimojiState (8 Greek States)","description":"Φ(≤3 vars, no quantifiers, 1 relation), Λ(quantifiers, depth≤2), Ρ(>5 ops, no quantifiers, ≤10), Κ(>5 vars, depth≤1), Ω(contradiction), Σ(palindromic), Π(>10 ops), Ζ(default).","type":"definition"},{"name":"LogogramReceipt","description":"Structure: shape, status, regime, payloadBound, contradictionWitness, tearBoundary, detachedMass, residualLane.","type":"definition"},{"name":"Admission Gates","description":"typeAdmissible (regime recognized), projectionAdmissible (payloadBound ∨ tear∧¬detached), mergeAdmissible (¬residualLane).","type":"gate"}],"tags":["Hachimoji","codec","equation-classification","receipt","RRC","deterministic"],"layer":"application","dependencies":["Rainbow Raccoon Compiler","AVMIsa Emit"],"summary":"Deterministic 5-stage codec converting equations to certified emit stamps via Hachimoji state classification and RRC admission gates; same equation → same state → same receipt every time."} +{"file":"library/MASTER_LIBRARY_RECEIPT.md","title":"Master Receipt: Chentsov-Hachimoji Library Integration","concepts":[{"name":"ChentsovFinite.lean","description":"Formal proof that Fisher information metric is unique Riemannian metric on 8-state Hachimoji probability simplex; zero sorry axioms.","type":"theorem"},{"name":"chentsov_finite Theorem","description":"Fisher metric g_ij = δ_ij/π_i is unique on Δ^n for n≥2 — PROVEN.","type":"theorem"},{"name":"chentsov_hachimoji Corollary","description":"Application of Chentsov uniqueness to 8-state Hachimoji system — PROVEN.","type":"theorem"},{"name":"Hachimoji Classification Rules","description":"Priority-based: integrals→TRACE, summation→BIND, equality+quantifier+ca>0.03→ADMIT, no equality→CHALLENGE, etc.","type":"algorithm"},{"name":"Fisher Metric Connection","description":"Chentsov's theorem transforms arbitrary encoding into canonical one; Fisher metric is forced by mathematics of statistical inference on probability simplex.","type":"bridge"},{"name":"RRC Triple Gating","description":"typeAdmissible + projectionAdmissible + mergeAdmissible; all gates derived from canonical Fisher geometry.","type":"gate"}],"tags":["Chentsov","Hachimoji","Fisher-metric","information-geometry","Lean","formal-verification","codec"],"layer":"application","dependencies":["ChentsovFinite","Hachimoji Codec"],"summary":"Integration of Chentsov uniqueness proof with Hachimoji codec: Fisher metric is canonical on 8-state simplex, forcing classification thresholds and RRC gates to be principled rather than heuristic."} +{"file":"pending/lean_unification/README.md","title":"Pending (Lean Unification)","concepts":[{"name":"Lean Unification Quarantine","description":"Folder quarantining files that violate repo's Lean-first direction; Lean defines surfaces, non-Lean only thin shims for transport/runtime.","type":"gate"}],"tags":["quarantine","Lean","unification"],"layer":"infrastructure","dependencies":[],"summary":"Quarantine folder for files violating Lean-first direction; pending port/removal."} +{"file":"plugins/substack-connector/README.md","title":"Substack Connector","concepts":[{"name":"Substack Connector","description":"Repo-local helper for preparing Markdown posts and image assets for Substack; converts IMAGE placeholders, copies assets, emits post.md and post.html.","type":"tool"},{"name":"Existing Post Updater","description":"Authenticated updater using local Substack cookie string; writes timestamped backup before updating remote draft.","type":"tool"}],"tags":["substack","publishing","markdown","connector"],"layer":"application","dependencies":[],"summary":"Local helper for preparing Markdown posts for Substack with image asset handling and authenticated post updating."} +{"file":"workspace-config/README.md","title":"workspace-config README","concepts":[{"name":"Workspace Config","description":"IDE configuration, environment files, tooling setup directory; sensitive values in .env only, package.json for workspace tooling.","type":"definition"}],"tags":["config","IDE","environment"],"layer":"infrastructure","dependencies":[],"summary":"IDE configuration and environment files directory; .env for sensitive values, package.json for workspace tooling."} +{"file":"4-Infrastructure/AGENTS.md","title":"AGENTS.md — Infrastructure And Hardware","concepts":[{"name":"restic","description":"Deduplicated, encrypted, content-addressed backup snapshots with point-in-time restore","type":"tool"},{"name":"Garage","description":"Self-hosted Dynamo-style S3-compatible object store across Tailscale mesh nodes","type":"tool"},{"name":"rclone","description":"Moves raw objects between remotes (Garage↔gdrive) for cold-copy and sync","type":"tool"},{"name":"storage_agent","description":"Full-loop observer/optimizer/actor for restic+Garage+rclone stack with Q16_16 thresholds and receipt hash-chain","type":"tool"},{"name":"storage_agent_receipt_v1","description":"JSON schema for storage agent cycle receipts with observation/decision/action_result and parent_hash chain","type":"receipt"},{"name":"Observe-Decide-Act-Emit loop","description":"Storage agent operational pattern: observe cluster state, decide triggers, execute actions, emit receipts","type":"pattern"},{"name":"Tailscale mesh topology","description":"Multi-node Garage cluster connected via Tailscale with RPC port 3901 and S3 port 3900","type":"architecture"},{"name":"Q16_16 threshold constants","description":"All storage agent numeric thresholds encoded as Q16_16 fixed-point UInt32 (one=0x00010000)","type":"invariant"},{"name":"git post-commit hook","description":"Automatically runs db-consolidate offload+consolidate after every commit, non-blocking","type":"recipe"},{"name":"restic-backup.timer","description":"Systemd timer firing at 03:00 daily running backup.sh full (snap+cold-copy+sync+forget+verify)","type":"recipe"},{"name":"Compute Dispatch (WGSL)","description":"All compute shaders as WGSL source; dispatch via wgpu Rust with transparent Vulkan/CPU/WebGPU backend selection","type":"architecture"},{"name":"VCN compute substrate","description":"AMD VCN/NVIDIA NVENC H.264 hardware video encoder as compute device via MKV trick with BraidStrand payloads","type":"tool"},{"name":"braid_diat_codec","description":"ChiralityDIAT + MountainPacked + BraidResidual + BraidDiatFrame compression codec","type":"tool"},{"name":"spirv_copy_if_optimizer","description":"SPIR-V OpPhi→OpSelect transform eliminating branch overhead; emits CopyIfPattern","type":"tool"},{"name":"virtio_net_transform","description":"Virtio-net ring as computation pipeline: HASH_REPORT, TSO, MRG_RXBUF as Class-1 primitives","type":"tool"},{"name":"qemu_framebuffer_packer","description":"QEMU graphics framebuffer packer mapping Q16_16 scalars to ARGB8888 pixels for zero-copy DMA","type":"tool"},{"name":"geometric_entropy_explorer","description":"Places 8 braid strands on torus/sphere/cube, maximizes Shannon entropy via gradient descent","type":"tool"},{"name":"candidate_certification_bridge","description":"Bridge from entropy exploration JSON → Lean Candidates.lean with BraidState fixtures","type":"bridge"},{"name":"eigensolid_lean_bridge","description":"Lean-to-Postgres bridge executing Lean evaluations and extracting Q16_16 coordinates","type":"bridge"},{"name":"flac_dsp_node","description":"PipeWire/FLAC DSP node registration and spectral analysis for volunteer computing","type":"tool"},{"name":"ENE schema (braid eigensolid)","description":"Database tables: prover_state, prover_instances, sidon_labels, crossing_weights, eigensolid_snapshots, braid_strands","type":"schema"},{"name":"Cloudflare Workers edge","description":"WASM trinary VM core implementing Q0_16 scalar compute at edge","type":"architecture"},{"name":"rrc_refactor_oracle","description":"Chaos-game-driven RRC self-refactoring oracle generating PRUNE/MERGE/PROMOTE/SPLIT commands","type":"tool"},{"name":"rrc_bosonic_tensor_gpu","description":"GPU-accelerated Bosonic Tensor Network Centrality using wgpu (Vulkan) adaptive RK4","type":"tool"}],"tags":["infrastructure","storage","backup","garage","restic","rclone","tailscale","shim","fpga","wgsl","compute","braid","eigensolid","receipt","Q16_16"],"layer":"4-Infrastructure","dependencies":["Q16_16","Sidon labels","BraidStorm","eigensolid","receipt","restic","Garage","rclone","wgpu","WGSL","Tailscale"],"summary":"Infrastructure AGENTS.md covering storage stack (restic+Garage+rclone), storage agent with Q16_16 threshold receipts, Tailscale mesh topology, compute dispatch via WGSL/wgpu, and 20+ shim tools for braid compression, FPGA, GPU, and DSP workloads."} +{"file":"0-Core-Formalism/README.md","title":"0-Core-Formalism — Formal Foundations","concepts":[{"name":"bind","description":"State → (State → Action) → State — the fundamental state transition primitive","type":"primitive"},{"name":"TriumvirateClock","description":"Ternary consensus mechanism with ADD/PAUSE/SUBTRACT roles","type":"architecture"},{"name":"Builder/Judge/Warden","description":"Three roles mapped to hardware registers for Triumvirate consensus","type":"definition"},{"name":"OTOM","description":"Ordered Transformation & Orchestration Model — core orchestration primitive","type":"definition"},{"name":"Q16_16 fixed-point constraint","description":"Core compute paths use Q16_16; Float forbidden; ofFloat only at external boundary","type":"invariant"},{"name":"lake build baseline","description":"Current baseline: lake build reports 3314 jobs, 0 errors","type":"receipt"},{"name":"Semantics.SDPVerify","description":"SDP verification module in Lean/Semantics","type":"gate"},{"name":"Semantics.GoormaghtighCert","description":"Goormaghtigh conjecture certification module","type":"theorem"},{"name":"Semantics.HachimojiManifoldAxiom","description":"Hachimoji DNA manifold axiom module","type":"definition"},{"name":"Semantics.GeneticBraidBridge","description":"Bridge module connecting genetic structures to braid theory","type":"bridge"},{"name":"Semantics.SieveLemmas","description":"Sieve lemma module for formal proofs","type":"theorem"},{"name":"Semantics.InteractionGraphSidon","description":"Interaction graph with Sidon label constraints","type":"theorem"}],"tags":["core","formalism","lean","semantics","bind","consensus","Q16_16","fixed-point","formal-verification"],"layer":"0-Core-Formalism","dependencies":["Q16_16","TriumvirateClock","OTOM"],"summary":"Core formalism README defining bind primitive, TriumvirateClock consensus, Builder/Judge/Warden roles, OTOM model, Q16_16 fixed-point invariant, and listing blessed Lean/Semantics modules with 3314-job build baseline."} +{"file":"scripts/qc-flag/AGENTS.md","title":"QC Flagger — AGENTS.md","concepts":[{"name":"QC Flagger","description":"Automated code quality inspection for Lean files implementing 7-check protocol","type":"tool"},{"name":"7-check inspection protocol","description":"Structural health, naming conventions, Q16_16 compliance, proof quality, dependency analysis, compression theorem pair, AGENTS.md compliance","type":"protocol"},{"name":"Structural Health check","description":"Theorem/def/eval/sorry counts, empty theorems, tautologies, unused imports, set_option suppressions","type":"gate"},{"name":"Q16_16 Compliance check","description":"Flags Float/ofFloat usage in hot-path code outside JSON/sensor boundary shims","type":"gate"},{"name":"Compression Theorem Pair check","description":"Every compression module must provide eigensolid_convergence AND receipt_invertible","type":"gate"},{"name":"Naming Conventions check","description":"PascalCase for files/types, camelCase for functions/theorems, banned prefixes/suffixes","type":"gate"},{"name":"Proof Quality check","description":"Defs without companion theorems, .get! without .isSome, native_decide coverage","type":"gate"}],"tags":["qc","quality","lean","inspection","tool","verification","Q16_16"],"layer":"scripts","dependencies":["eigensolid_convergence","receipt_invertible","Q16_16"],"summary":"QC Flagger tool implementing 7-check Lean inspection protocol covering structural health, naming, Q16_16 compliance, proof quality, dependencies, compression theorem pairs, and AGENTS.md compliance."} +{"file":"scripts/qc-flag/reports/20260513_223804/qc_flags.md","title":"QC Flag Report — UniversalBridge.lean (2026-05-13 22:38)","concepts":[{"name":"UniversalBridge QC report","description":"QC inspection of Physics/UniversalBridge.lean: 26 theorems, 20 defs, 0 sorries, 0 tautologies, 10 naming warnings","type":"receipt"},{"name":"naming_conventions warnings","description":"10 warnings for non-camelCase function names (RE_LAMINAR, H_INTERVAL, q16_add, etc.)","type":"gate"},{"name":"normalizedT companion gap","description":"def normalizedT at line 47 has no companion theorem or #eval witness","type":"gate"}],"tags":["qc","report","lean","universal-bridge","naming","proof-quality"],"layer":"scripts","dependencies":["QC Flagger","UniversalBridge"],"summary":"QC report for UniversalBridge.lean showing PASS with 10 naming convention warnings and 1 missing companion theorem. Zero sorries, zero tautologies."} +{"file":"scripts/qc-flag/reports/20260513_223537/qc_flags.md","title":"QC Flag Report — UniversalBridge.lean (2026-05-13 22:35)","concepts":[{"name":"UniversalBridge QC report (duplicate)","description":"Earlier run of same QC inspection, identical results: PASS with 10 issues","type":"receipt"}],"tags":["qc","report","lean","duplicate"],"layer":"scripts","dependencies":["QC Flagger"],"summary":"Duplicate QC report for UniversalBridge.lean, identical to the 22:38 run. PASS with 10 naming warnings."} +{"file":"2-Search-Space/README.md","title":"2-Search-Space — Quaternion, Braid, and Manifold Primitives","concepts":[{"name":"PIST","description":"Perfectly Imperfect Square Theory — core search space primitive","type":"primitive"},{"name":"SVQF","description":"Spherical Quaternion Vector Field for high-dimensional navigation","type":"primitive"},{"name":"FAMM","description":"Frustration-Aware Manifold Mesh for search space topology","type":"primitive"},{"name":"Braid Theory","description":"Topological constraints via braid brackets (planned)","type":"primitive"},{"name":"Quaternion Sieve","description":"Counter-rotation as band-pass filter optimization","type":"algorithm"},{"name":"Non-linear Gearbox","description":"φ-based fractional steps for search optimization","type":"algorithm"},{"name":"Calabi-Yau Compactification","description":"Discarded space folded into compactified dimensions","type":"definition"},{"name":"Ricci Flow","description":"Self-smoothing via ∂g_ij/∂t = -2R_ij","type":"algorithm"}],"tags":["search-space","quaternion","braid","manifold","PIST","SVQF","FAMM","Q16_16"],"layer":"2-Search-Space","dependencies":["Q16_16","0-Core-Formalism"],"summary":"Search space layer defining quaternion, braid, and manifold primitives (PIST, SVQF, FAMM) with key optimizations including Quaternion Sieve, φ-based gearbox, Calabi-Yau compactification, and Ricci flow. Fixed-point Q16_16 throughout."} +{"file":"3-Mathematical-Models/README.md","title":"3-Mathematical-Models — Equation Registry and Proof Tracking","concepts":[{"name":"Equation Registry","description":"Central TSV registry with Model_Name, Family, Equation, Variables, Purpose, Location, Implemented, Status, Cross_Refs, Domain_Type, Bind_Class","type":"spec"},{"name":"Mathlib database","description":"Database of mathematical library references for equation tracking","type":"tool"}],"tags":["mathematical-models","equations","registry","proof-tracking"],"layer":"3-Mathematical-Models","dependencies":["0-Core-Formalism","2-Search-Space"],"summary":"Central equation registry, proof tracking, and mathematical substrate index. All new mathematical models must be added to the registry before creating separate documentation."} +{"file":"3-Mathematical-Models/variable_omega_edge_anomalies.md","title":"Variable Torsional Rotation: Edge-of-Universe Anomalies","concepts":[{"name":"Variable ω field","description":"Torsional frequency ω = ω(θ, x, t) varying in space and time, where different regions unwind at different rates","type":"definition"},{"name":"Torsional wave equation","description":"∇²ω - (1/c_θ²) ∂²ω/∂t² = -ρ_τ / τ_0 — torsional frequency field equation","type":"definition"},{"name":"Methuselah star resolution","description":"HD 140283 appears older than universe due to local underdensity (5% → τ_local/t ≈ 1.053)","type":"definition"},{"name":"JWST early galaxies resolution","description":"Overdense regions with T(x) high → ω low → local clock runs faster → galaxies appear mature","type":"definition"},{"name":"Hubble tension as torsional gradient","description":"H_0(x) = ω(x) · H_0^(global) / ω_0 — local volume underdense → biased H_0 measurement","type":"definition"},{"name":"Dark flow explanation","description":"Large-scale ω gradient pulls everything toward region of lower ω (faster unwinding)","type":"definition"},{"name":"Axis of evil explanation","description":"Directional ω anisotropy at z=1100 creates dipolar modulation projecting onto quadrupole/octupole","type":"definition"},{"name":"Variable ω compression analogy","description":"Decoder clock rate varies with local context density — slow for repetitive data, fast for novel data","type":"pattern"}],"tags":["cosmology","torsion","anomalies","Hubble-tension","JWST","Methuselah-star","dark-flow","axis-of-evil","compression"],"layer":"3-Mathematical-Models","dependencies":["torsional cosmology","Hubble tension","ΛCDM"],"summary":"Proposes variable torsional frequency ω(θ,x,t) as unified explanation for five cosmological anomalies: Methuselah star age, JWST early galaxies, Hubble tension, dark flow, and CMB axis of evil. Includes compression analogy with variable-rate decoder clock."} +{"file":"3-Mathematical-Models/universal_evolutionary_equation.md","title":"Universal Evolutionary Equation","concepts":[{"name":"Evolutionary Operator Ψ_E","description":"Phenotype(x,t) = Ψ_E[Genotype(x) × Regulatory_State(t)] — the conserved operator reused across 120 Myr of butterfly evolution","type":"definition"},{"name":"Convergent evolution as shared operator","description":"Seven butterfly lineages + one moth converge on identical patterns using same genetic toolkit — Ψ_E is frozen-in invariant","type":"theorem"},{"name":"Multilayer Moiré Decoder","description":"Computational analog of Ψ_E: 4-layer basis fusion with gap adaptation and twist angles","type":"architecture"},{"name":"DNA inversion mechanism","description":"Mirror involution t → 2k+1-t — 180° twist between van der Waals layers, preserves topology","type":"definition"},{"name":"Equation Stack","description":"Nested operators: Universe = Ψ_gravity[Ψ_QFT[Ψ_chemistry[Ψ_genetics[Ψ_ecology]]]]","type":"definition"},{"name":"Conservation law of Ψ","description":"Operator is topologically protected — cannot change without destroying information it carries","type":"invariant"},{"name":"Compression spectral entropy bound","description":"Compression ratio bounded by H_Ψ(data) = -Σ p(n) log₂ p_Ψ(n) ≤ 8 bits/byte","type":"theorem"}],"tags":["evolution","genetics","compression","moire","operator","convergence","butterflies","DNA","PIST"],"layer":"3-Mathematical-Models","dependencies":["unified equation","PIST","moire decoder","Ψ_E"],"summary":"Universal evolutionary equation showing that convergent evolution in butterflies reveals a conserved operator Ψ_E, analogous to the multilayer moiré decoder for compression. Observable = Ψ[Conserved_Basis × Dynamic_Context]."} +{"file":"3-Mathematical-Models/unified_equation.md","title":"The Unified Equation","concepts":[{"name":"Unified equation","description":"Ω(n,θ,α) = Ψ[B(θ) ⊗ C(n,α)] ⊕ Δ(n,θ,α) — universal form collapsing physics, biology, compression","type":"definition"},{"name":"Domain collapse","description":"Same equation maps to muon g-2, cosmology, thermodynamics, quantum mechanics, evolution, genetics, materials, compression","type":"pattern"},{"name":"Degenerate forms","description":"Δ→0: deterministic lossless; Ψ=identity: raw measurement; B=trivial: context-only; C=trivial: static frozen","type":"definition"},{"name":"Universe as decoder","description":"Universe(t) = Ψ_universe[BigBang_Basis ⊗ Torsional_Context(t)] ⊕ Quantum_Foam_Noise","type":"definition"}],"tags":["unified-equation","physics","compression","operator","basis","context","residual"],"layer":"3-Mathematical-Models","dependencies":["universal evolutionary equation","PIST","torsional cosmology"],"summary":"The unified equation Ω = Ψ[B⊗C] ⊕ Δ collapses 11 domains (particle physics through compression) into one form. Every system encodes state by combining conserved basis with dynamic context through topologically protected operator."} +{"file":"3-Mathematical-Models/uncertainty_from_torsional_vibration.md","title":"Quantum Uncertainty and Double-Slit from Torsional Vibration","concepts":[{"name":"Torsional wavefunction","description":"Ψ(θ,x) = A(x)·exp(iω_Ψθ)·f(θ-θ_0(x)) — quantum state as localized vibration in unwinding field","type":"definition"},{"name":"ℏ as angular resolution","description":"ℏ ≡ Δθ_min — minimum resolvable phase interval, not a constant of nature","type":"definition"},{"name":"Uncertainty from Fourier sampling","description":"Δx·Δp ≥ ℏ/2 derived from sampling theory in θ-space, not operator noncommutativity","type":"theorem"},{"name":"Double-slit from torsional paths","description":"Interference arises because torsional sheet is one connected surface; paths have different phases when recombining","type":"definition"},{"name":"Measurement as phase pinning","description":"Detector applies torsional torque locking phase to reference — like clamping vibrating drumhead","type":"definition"},{"name":"Born rule from mode competition","description":"P(A) = |Ψ_A|²/(|Ψ_A|²+|Ψ_B|²) derived from torsional mode competition, not postulated","type":"theorem"},{"name":"Complementarity from geometry","description":"Resolution-dependent visibility: Δθ >> Δθ_crit → particle-like; Δθ << Δθ_crit → which-path info","type":"definition"},{"name":"Compression analogy","description":"Uncertainty principle = fundamental limit of prediction given finite context; wave = model's uncertainty, particle = actual outcome","type":"pattern"}],"tags":["quantum-mechanics","uncertainty","double-slit","torsion","measurement","Born-rule","complementarity","compression"],"layer":"3-Mathematical-Models","dependencies":["torsional cosmology","Heisenberg uncertainty","Fourier analysis"],"summary":"Derives Heisenberg uncertainty principle and double-slit interference from torsional vibration geometry. ℏ is minimum angular resolution; measurement is phase pinning. Rederives QM from geometric premises without new predictions."} +{"file":"3-Mathematical-Models/torsional_cosmology_spin.md","title":"Torsional Cosmology: Time as Unwinding, Spin as Gradient","concepts":[{"name":"Torsional cosmology","description":"Replace time t with torsion angle θ; Big Bang = maximum winding, present = partial unwinding, future = heat death","type":"definition"},{"name":"Torsional metric","description":"ds² = -dθ²/ω(θ)² + a(θ)²[dr²/(1-kr²) + r²dΩ²] + ℓ_P²dθ²Γ(θ)","type":"definition"},{"name":"Spin as winding number","description":"s = (1/2π)∮∇_θφ·dθ — spin-1/2 is Möbius strip in torsional space requiring 720° rotation","type":"definition"},{"name":"Particle spectrum from Fourier","description":"Particle spectrum is Fourier spectrum of torsional unwinding: n=2s (winding number → spin)","type":"theorem"},{"name":"Forces as torsional derivatives","description":"4 forces are different order derivatives of same torsional potential: Gravity=∂⁰, Strong=∂¹, Weak=∂², EM=∂³","type":"definition"},{"name":"Dark energy as residual torsion","description":"ρ_DE(θ) = ρ_foam·(1-θ/θ_max)²; apparent constancy from being inside the system","type":"definition"},{"name":"CMB spectral index prediction","description":"n_s = 1 - 2/(1+θ_max/θ_recombination) ≈ 0.965, matching Planck measurement","type":"theorem"},{"name":"Proton stability from topology","description":"Baryon number is torsional winding number; decay requires topology change, exponentially suppressed","type":"definition"},{"name":"PIST decoder from torsional geometry","description":"Spin-1/2 predictors as fundamental unit, spin-1 mixing as majority voting, Higgs as global bias — PIST architecture derived from torsion","type":"architecture"}],"tags":["cosmology","torsion","spin","particle-spectrum","forces","dark-energy","CMB","proton-stability","PIST"],"layer":"3-Mathematical-Models","dependencies":["torsional metric","FLRW metric","spin-statistics theorem","PIST"],"summary":"Torsional cosmology framework where time is unwinding angle θ. Spin is winding number, particle spectrum is Fourier spectrum of unwinding, four forces are torsional derivatives at different orders. Predicts CMB n_s ≈ 0.965."} +{"file":"3-Mathematical-Models/thermodynamic_test_recursive_branch_cut.md","title":"Thermodynamic Test of the Recursive Branch-Cut Hypothesis","concepts":[{"name":"Fractal entropy scaling","description":"S(R) ≤ C·R^{D_H}·(E/R^{D_H})^{(D_H-1)/D_H} with D_H = log(2)/log(Φ) ≈ 1.44","type":"definition"},{"name":"Fractal specific heat","description":"C_V ∝ T^{D_s} where D_s = 2D_H/(1+D_H) ≈ 1.18 for fractal spectral dimension","type":"definition"},{"name":"Thermodynamic falsification","description":"Recursive branch-cut hypothesis fails quantitatively for entropy scaling (R^{1.44}) and specific heat (T^{1.18})","type":"gate"},{"name":"Phase transition survival","description":"Theory survives if fractal dimension is emergent large-scale property, not microscopic one","type":"definition"},{"name":"Arrow of time = torsional unwinding","description":"dS/dθ ≥ 0; arrow of time identical to torsional arrow, not separate thermodynamic arrow","type":"definition"},{"name":"Jarzynski equality invariance","description":"Jarzynski equality ⟨exp(-βW)⟩ = exp(-βΔF) cannot be violated by fractal geometry","type":"invariant"},{"name":"Landauer limit invariance","description":"E_min = k_BT ln(2) unchanged by fractal structure; applies to physical erasure, not information packing","type":"invariant"}],"tags":["thermodynamics","fractal","branch-cut","entropy","specific-heat","phase-transitions","falsification","Bekenstein","Landauer"],"layer":"3-Mathematical-Models","dependencies":["recursive branch-cut self-similarity","Bekenstein bound","Jarzynski equality","Landauer limit"],"summary":"Tests recursive branch-cut hypothesis against thermodynamic laws. Fails quantitatively for entropy scaling and specific heat. Survives only as large-scale geometric description. Thermodynamic laws (Carnot, Jarzynski, Landauer) are too robust to be affected."} +{"file":"3-Mathematical-Models/recursive_branch_cut_self_similarity.md","title":"Recursive Branch-Cut Self-Similarity: From Quantum Foam to Superclusters","concepts":[{"name":"Genus-3 hyperbolic surface","description":"Universe embedded in genus-3 surface with fixed angular resolution; branch-cut defects at critical angles","type":"definition"},{"name":"Φ² scaling factor","description":"L_{n+1}/L_n ≈ exp(d_inj) ≈ Φ² ≈ 2.618 — same factor as Fibonacci, DNA helix, golden ratio","type":"definition"},{"name":"Recursive branch-cut tree","description":"At each scale L_n, observer sees: below=homogeneous, at=critical (branch cut), above=4 distinct modes","type":"pattern"},{"name":"Fractal dimension D_f ≈ 1.44","description":"log(2)/log(Φ) — observable signature at phase transition barriers across all scales","type":"definition"},{"name":"DNA chromatin hierarchy","description":"Self-similar DNA packaging: 2→11→30→300→700→1000→10000 nm with branch cuts at each level","type":"pattern"},{"name":"10.5 bp/turn and Φ","description":"DNA helix 10.5 bp/turn; 10.5/Φ ≈ 6.5 ≈ 6.8 nucleosomes per 11-nm fiber turn","type":"definition"},{"name":"Recursive decoder architecture","description":"predict_recursive(n, level): detect branch cut at critical scale, switch to next-level model","type":"algorithm"}],"tags":["self-similarity","fractal","genus-3","golden-ratio","DNA","chromatin","branch-cut","cosmic-web","hierarchy"],"layer":"3-Mathematical-Models","dependencies":["genus-3 surface","golden ratio Φ","fractal dimension","chromatin structure"],"summary":"Recursive self-similar structure from quantum foam to superclusters via genus-3 hyperbolic surface. Φ² ≈ 2.618 scaling between levels. Fractal dimension D_f ≈ 1.44 at phase transitions. Maps to DNA chromatin hierarchy."} +{"file":"3-Mathematical-Models/physics_eqs_mapped_pro.md","title":"Physics Equations — Mapped with Compression & Metaprobe","concepts":[{"name":"Unified equation mapping (pro)","description":"333+ physics equations mapped to Ω = Ψ[B(θ)⊗C(n,α)]⊕Δ(n,θ,α) with detailed symbol tables","type":"spec"},{"name":"Newton to QFT equation coverage","description":"Classical mechanics through quantum field theory: Newton, Lagrange, Hamilton, Maxwell, Schrödinger, Dirac, Standard Model, GR, cosmology, fluid dynamics, optics, thermodynamics","type":"glossary"}],"tags":["physics","equations","mapping","unified-equation","database","reference"],"layer":"3-Mathematical-Models","dependencies":["unified equation"],"summary":"Comprehensive mapping of 333+ physics equations (classical mechanics through QFT and cosmology) to the unified equation form with detailed symbol tables for each."} +{"file":"3-Mathematical-Models/physics_eqs_mapped_parallel.md","title":"Physics Equations — Parallel Mapped","concepts":[{"name":"Parallel equation mapping","description":"6-worker parallel mapping of physics equations to unified form with domain-specific symbol interpretations","type":"spec"}],"tags":["physics","equations","parallel","mapping","reference"],"layer":"3-Mathematical-Models","dependencies":["unified equation"],"summary":"Parallel (6-worker) mapping of physics equations to the unified equation form, covering classical mechanics through cosmology with domain-specific interpretations."} +{"file":"3-Mathematical-Models/physics_eqs_mapped.md","title":"Physics Equations Database — Mapped to Unified Equation","concepts":[{"name":"Physics equations database","description":"333 equations mapped to unified form with domain categories and symbol mappings","type":"spec"}],"tags":["physics","equations","database","mapping","reference"],"layer":"3-Mathematical-Models","dependencies":["unified equation"],"summary":"Database of 333 physics equations mapped to the unified equation Ω = Ψ[B⊗C] ⊕ Δ across all domains from classical mechanics to quantum field theory."} +{"file":"3-Mathematical-Models/physics_eqs_eigenvector_mapped.md","title":"Physics Equations — Eigenvector Cluster Mapping","concepts":[{"name":"Eigenvector cluster analysis","description":"Domain adjacency matrix + principal eigenvector analysis clustering 1388 equations into 5 clusters","type":"algorithm"},{"name":"Cluster 1: Electromagnetism & Circuits","description":"268 equations, eigenvalue 0.968750 — largest cluster by far","type":"definition"},{"name":"Cluster 2: Condensed Matter & Superconductivity","description":"150 equations, eigenvalue 0.969697","type":"definition"},{"name":"Domain adjacency matrix","description":"Matrix of equation-domain relationships used for spectral clustering","type":"algorithm"},{"name":"1388 equation coverage","description":"Massive physics equation database spanning EM, condensed matter, optics, surface science, polymer physics, hydrology, astrophysics, nuclear physics, quantum information, rheology, plasma physics, nanoscience, biophysics, cosmology","type":"glossary"}],"tags":["physics","equations","eigenvector","clustering","spectral-analysis","database"],"layer":"3-Mathematical-Models","dependencies":["physics equations database","spectral clustering"],"summary":"Eigenvector clustering of 1388 physics equations into 5 domain clusters using adjacency matrix spectral analysis. Electromagnetism cluster (268 equations) is dominant. Covers 30+ physics subdomains."} +{"file":"3-Mathematical-Models/physics_compression_bridge.md","title":"From Known Physics to Compression Architecture","concepts":[{"name":"Landauer reversibility → deterministic state","description":"E_dissipated ≥ k_BT·ln(2) per bit erased → decoder must be reversible by construction, no discard operations","type":"bridge"},{"name":"Shannon entropy → residual maximization","description":"H(X) = -Σp(x)log p(x) → decoder's prediction model must maximize residual entropy distribution","type":"bridge"},{"name":"Jaynes maxent → empirical frequency models","description":"Optimal context model is maxent for observed statistics → PIST basis is frequency-ranked pool","type":"bridge"},{"name":"Bennett reversibility → inverse operations","description":"Any computation reversible by retaining intermediates → PIST 8-opcode machine extended with inverses (FUSE→SPLIT)","type":"bridge"},{"name":"Uncertainty principle → complementary models","description":"Δx·Δp ≥ ℏ/2 → decoder needs complementary local/global models; tree address + surface/torus + shell coordinate","type":"bridge"},{"name":"Bell correlations → nonlocal context","description":"CHSH |S| ≤ 2√2 → context mixing must include distant matches, not just recent history","type":"bridge"},{"name":"Bekenstein bound → O(1) basis state","description":"I ≤ 2πRE/(ℏc·ln2) → decoder state should be surface-like; PIST basis = 16 bytes vs data = 10⁹ bytes","type":"bridge"},{"name":"Thermodynamic uncertainty → speed-accuracy tradeoff","description":"(ΔJ)²/⟨J⟩²·σ ≥ 2k_B → fast decoders produce more residuals; gear law C_out = G_AS·C_in","type":"bridge"},{"name":"Fluctuation theorem → low-work trajectories","description":"⟨exp(-βW)⟩ = exp(-βΔF) → decoder learning minimizes cumulative prediction error; FAMM scars record high-work paths","type":"bridge"},{"name":"PIST as thermodynamically optimal","description":"PIST is unique architecture consistent with all 9 known physical laws — not assumed, derived","type":"theorem"}],"tags":["physics","compression","PIST","Landauer","Shannon","Jaynes","Bennett","Bell","Bekenstein","thermodynamics","architecture"],"layer":"3-Mathematical-Models","dependencies":["PIST","Landauer limit","Shannon entropy","Jaynes maxent","Bennett reversibility","Heisenberg uncertainty","Bell inequality","Bekenstein bound","Jarzynski equality","FAMM"],"summary":"Derives PIST compression architecture from 9 known physical laws (Landauer, Shannon, Jaynes, Bennett, Heisenberg, Bell, Bekenstein, thermodynamic uncertainty, fluctuation theorem). PIST is thermodynamically optimal decompression engine."} +{"file":"3-Mathematical-Models/half_mobius_investigation.md","title":"The Half-Möbius Fold: A Cross-Domain Investigation","concepts":[{"name":"Half-Möbius fold","description":"90° twist with branch cut — natural intermediate between periodic (cylinder) and anti-periodic (Möbius) boundary conditions","type":"definition"},{"name":"Topological insulator surface states","description":"Surface Dirac cone is Möbius strip in momentum space; real-space surface is cylinder with virtual branch cut","type":"definition"},{"name":"DNA replication fork as branch cut","description":"Replication fork = branch cut in twisted ribbon; behind=fork: separate cylinders, at=fork: half-Möbius, ahead: double helix","type":"definition"},{"name":"Big Bang as branch cut","description":"Universe topology transitions from pre-Big Bang (unknown) to post-Big Bang (observable) at fold","type":"definition"},{"name":"W mass energy dependence","description":"Predicts W mass depends on production energy near ~2 TeV fold; CDF vs CMS discrepancy explained","type":"definition"},{"name":"Anyonic statistics at fold","description":"Near branch cut: anyonic statistics possible (θ_stat = 0 to π continuously); fold = undefined statistics","type":"definition"},{"name":"Fold crossings in compression","description":"Bosonic regions: periodic context; fermionic regions: anti-periodic; fold: incompressible branch cut correction","type":"pattern"},{"name":"Start codon as fold marker","description":"AUG start codon signals fold crossing; stop codons (UAA/UAG/UGA) mark return to bosonic sequence","type":"definition"}],"tags":["half-Mobius","topology","materials","DNA","cosmology","spin","compression","branch-cut","anyons","topological-insulator"],"layer":"3-Mathematical-Models","dependencies":["topological insulators","DNA topology","spin-statistics theorem","torsional cosmology","PIST"],"summary":"Cross-domain investigation of the half-Möbius fold (90° twist with branch cut) appearing in topological insulators, DNA replication, cosmology, spin-statistics, and compression. Open theoretical conjecture with testable predictions."} +{"file":"3-Mathematical-Models/gut_synthesis_100years.md","title":"GUT Synthesis: What Survives from 100 Years of Attempts","concepts":[{"name":"Kaluza-Klein survival","description":"Apparent forces are shadows of simpler higher-dimensional structure; fifth dimension = fractional order parameter α","type":"definition"},{"name":"Yang-Mills survival","description":"Connection A_μ and curvature F_μν are right language; gauge group is consequence not cause; gauge bosons = collective excitations of shear mode","type":"definition"},{"name":"SU(5) proton stability","description":"Proton stable because baryon number is topological invariant of fractional field; decay suppressed by shear angle mismatch exp(-cot θ_obs)","type":"definition"},{"name":"SO(10) spinor as spectral decomposition","description":"16-dimensional spinor = 4 modes × 4 Dirac components from fractional field spectral decomposition","type":"definition"},{"name":"SUSY → shear duality","description":"Boson-fermion pairing from shear transformation mixing even/odd powers, not supersymmetry; divergences cancelled by fractal dimension","type":"definition"},{"name":"String → noncommuting derivatives","description":"String worldsheet = 2D field theory; [D^α, D^β] ≠ 0 replaces [X^μ, X^ν] = iθ^{μν}","type":"definition"},{"name":"Fractional resonant quantization","description":"Four forces at α = 1, 1/2, 1/3, 1/4 — Fourier decomposition of single shear kernel","type":"definition"}],"tags":["GUT","unification","Kaluza-Klein","Yang-Mills","SU5","SO10","SUSY","string-theory","fractional-derivatives","shear"],"layer":"3-Mathematical-Models","dependencies":["fractional unified field","shear transformation","gauge theory"],"summary":"Honest assessment of 100 years of GUT attempts. Extracts residual truths from Kaluza-Klein, Yang-Mills, SU(5), SO(10), SUSY, and string theory. Proposes fractional operator algebra with resonant quantization as alternative."} +{"file":"3-Mathematical-Models/extracted_equations.md","title":"Extracted Equations from Articles and Theory Documents","concepts":[{"name":"Muon g-2 measurement","description":"a_μ = (|g|-2)/2 = 0.001165920705(114), σ = 0.127 ppm, matched to SM within 0.5σ","type":"definition"},{"name":"Fractional unified field equation","description":"(D_t^α + (-∇²)^β)Ψ = λ|Ψ|^γ Ψ — fractional derivative with self-interaction","type":"definition"},{"name":"Riesz fractional derivative","description":"D^α f(x) = F^{-1}[|k|^α · F[f](k)] with eigenfunctions exp(ikx)","type":"definition"},{"name":"Force emergence table","description":"EM: α=1, Weak: α=1/2, Strong: α=1/3, Gravity: α=1/4 — resonant quantization","type":"definition"},{"name":"Anthropic shear transformation","description":"Ψ_observed(x,t) = ∫K_θ(x-x')Ψ_unified(x',t)dx' — observer-dependent projection","type":"definition"},{"name":"Mode weight under shear","description":"w(α,θ) = sin(θ)^α · cos(θ)^{1-α}","type":"definition"}],"tags":["equations","muon-g2","fractional-derivative","unified-field","shear","force-emergence"],"layer":"3-Mathematical-Models","dependencies":["fractional unified field","muon g-2","Riesz derivative"],"summary":"Extracted equations from CERN articles and fractional unified field theory: muon g-2 measurement, fractional field equation, Riesz derivatives, force emergence via resonant quantization, and anthropic shear transformation."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AMMR.md", "title": "AMMR", "concepts": [{"name": "AMMR", "description": "imports Quaternion, TorsionalPIST; domain: Semantics", "type": "definition"}, {"name": "Quaternion", "description": "dependency of AMMR", "type": "definition"}, {"name": "TorsionalPIST", "description": "dependency of AMMR", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Quaternion", "TorsionalPIST"], "summary": "Module (AMMR) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ASCIIArtCompetition.md", "title": "ASCIIArtCompetition", "concepts": [{"name": "ASCIIArtCompetition", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ASCIIArtCompetition) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ASCIIArtStore.md", "title": "ASCIIArtStore", "concepts": [{"name": "ASCIIArtStore", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ASCIIArtStore) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ASCIIGen.md", "title": "ASCIIGen", "concepts": [{"name": "ASCIIGen", "description": "imports GenomicCompression; domain: Semantics", "type": "definition"}, {"name": "GenomicCompression", "description": "dependency of ASCIIGen", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GenomicCompression"], "summary": "Module (ASCIIGen) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ASICTopology.md", "title": "ASICTopology", "concepts": [{"name": "ASICTopology", "description": "imports FixedPoint, Bind, NICProbe; imported by 2 modules; domain: Semantics", "type": "architecture"}, {"name": "FixedPoint", "description": "dependency of ASICTopology", "type": "definition"}, {"name": "Bind", "description": "dependency of ASICTopology", "type": "definition"}, {"name": "NICProbe", "description": "dependency of ASICTopology", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "NICProbe", "BitcoinMetaprobe"], "summary": "Module (ASICTopology) in the Semantics domain. Imports 3 module(s), imported by 2 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVM.md", "title": "AVM", "concepts": [{"name": "AVM", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AVM", "type": "definition"}, {"name": "Bind", "description": "dependency of AVM", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (AVM) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMR.md", "title": "AVMR", "concepts": [{"name": "AVMR", "description": "imports Spectrum, SpectralField, VecState; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of AVMR", "type": "definition"}, {"name": "SpectralField", "description": "dependency of AVMR", "type": "definition"}, {"name": "VecState", "description": "dependency of AVMR", "type": "definition"}, {"name": "ShellModel", "description": "dependency of AVMR", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AVMR", "type": "definition"}, {"name": "GeneticCode", "description": "dependency of AVMR", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Spectrum", "SpectralField", "VecState", "ShellModel", "FixedPoint", "GeneticCode", "HutterMaximumCompression", "KimiProber"], "summary": "Integration module (AVMR) that composes 6 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMRClassification.md", "title": "AVMRClassification", "concepts": [{"name": "AVMRClassification", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (AVMRClassification) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMRCore.md", "title": "AVMRCore", "concepts": [{"name": "AVMRCore", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (AVMRCore) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMRFrameworkMetaprobe.md", "title": "AVMRFrameworkMetaprobe", "concepts": [{"name": "AVMRFrameworkMetaprobe", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AVMRFrameworkMetaprobe", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (AVMRFrameworkMetaprobe) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMRInformation.md", "title": "AVMRInformation", "concepts": [{"name": "AVMRInformation", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (AVMRInformation) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMRProofs.md", "title": "AVMRProofs", "concepts": [{"name": "AVMRProofs", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (AVMRProofs) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AVMRTheorems.md", "title": "AVMRTheorems", "concepts": [{"name": "AVMRTheorems", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (AVMRTheorems) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AbelianSandpileRouting.md", "title": "AbelianSandpileRouting", "concepts": [{"name": "AbelianSandpileRouting", "description": "imports NeurodivergentPatternLUT, Genome18, MorphicNeuralNetwork; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "NeurodivergentPatternLUT", "description": "dependency of AbelianSandpileRouting", "type": "definition"}, {"name": "Genome18", "description": "dependency of AbelianSandpileRouting", "type": "definition"}, {"name": "MorphicNeuralNetwork", "description": "dependency of AbelianSandpileRouting", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["NeurodivergentPatternLUT", "Genome18", "MorphicNeuralNetwork", "CouchFilterNormalization"], "summary": "Module (AbelianSandpileRouting) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Adaptation.md", "title": "Adaptation", "concepts": [{"name": "Adaptation", "description": "imports Basic, FixedPoint; imported by 6 modules; domain: Semantics", "type": "definition"}, {"name": "Basic", "description": "dependency of Adaptation", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Adaptation", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Basic", "FixedPoint", "NetworkRAM", "KillerCriterion", "TorsionalPIST", "GenerateLUT", "Ingestion", "KimiProber"], "summary": "Module (Adaptation) in the Semantics domain. Imports 2 module(s), imported by 6 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AffineMappingLTSF.md", "title": "AffineMappingLTSF", "concepts": [{"name": "AffineMappingLTSF", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AffineMappingLTSF", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (AffineMappingLTSF) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AgenticCore.md", "title": "AgenticCore", "concepts": [{"name": "AgenticCore", "description": "imports FixedPoint, TopologicalAwareness; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AgenticCore", "type": "definition"}, {"name": "TopologicalAwareness", "description": "dependency of AgenticCore", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "TopologicalAwareness"], "summary": "Module (AgenticCore) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AgenticOrchestration.md", "title": "AgenticOrchestration", "concepts": [{"name": "AgenticOrchestration", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (AgenticOrchestration) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AgenticOrchestrationField.md", "title": "AgenticOrchestrationField", "concepts": [{"name": "AgenticOrchestrationField", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AgenticOrchestrationField", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (AgenticOrchestrationField) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AgenticTaskAssignment.md", "title": "AgenticTaskAssignment", "concepts": [{"name": "AgenticTaskAssignment", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AgenticTaskAssignment", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (AgenticTaskAssignment) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AgenticTheorems.md", "title": "AgenticTheorems", "concepts": [{"name": "AgenticTheorems", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AgenticTheorems", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (AgenticTheorems) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AnalysisFoundations.md", "title": "AnalysisFoundations", "concepts": [{"name": "AnalysisFoundations", "description": "imported by 1 modules; domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["HamiltonianFormal"], "summary": "Module (AnalysisFoundations) in the Semantics domain. imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AngrySphinx.md", "title": "AngrySphinx", "concepts": [{"name": "AngrySphinx", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AngrySphinx", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (AngrySphinx) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AngrySphinxPolicy.md", "title": "AngrySphinxPolicy", "concepts": [{"name": "AngrySphinxPolicy", "description": "imports Testing_ExtremeParameterTest; domain: Semantics", "type": "definition"}, {"name": "Testing_ExtremeParameterTest", "description": "dependency of AngrySphinxPolicy", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Testing_ExtremeParameterTest"], "summary": "Module (AngrySphinxPolicy) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/AtomicResolution.md", "title": "AtomicResolution", "concepts": [{"name": "AtomicResolution", "description": "imports FixedPoint, OrthogonalAmmr, EnvironmentMechanics; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of AtomicResolution", "type": "definition"}, {"name": "OrthogonalAmmr", "description": "dependency of AtomicResolution", "type": "definition"}, {"name": "EnvironmentMechanics", "description": "dependency of AtomicResolution", "type": "definition"}, {"name": "LandauerCompression", "description": "dependency of AtomicResolution", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "OrthogonalAmmr", "EnvironmentMechanics", "LandauerCompression", "CompressionMechanics"], "summary": "Integration module (AtomicResolution) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Atoms.md", "title": "Atoms", "concepts": [{"name": "Atoms", "description": "imports FixedPoint; imported by 5 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Atoms", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "FieldSolver", "Lemmas", "Constitution", "Decomposition", "Graph"], "summary": "Module (Atoms) in the Semantics domain. Imports 1 module(s), imported by 5 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Autobalance.md", "title": "Autobalance", "concepts": [{"name": "Autobalance", "description": "imports FixedPoint, Bind; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Autobalance", "type": "definition"}, {"name": "Bind", "description": "dependency of Autobalance", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "OmniNetwork"], "summary": "Module (Autobalance) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BHOCS.md", "title": "BHOCS", "concepts": [{"name": "BHOCS", "description": "imports FixedPoint, OrthogonalAmmr; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BHOCS", "type": "definition"}, {"name": "OrthogonalAmmr", "description": "dependency of BHOCS", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "OrthogonalAmmr"], "summary": "Module (BHOCS) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Basic.md", "title": "Basic", "concepts": [{"name": "Basic", "description": "imports FixedPoint; imported by 4 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Basic", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Adaptation", "CooperativeLUT", "Benchmarks_Grid17x17", "Benchmarks_HadwigerNelson"], "summary": "Module (Basic) in the Semantics domain. Imports 1 module(s), imported by 4 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Benchmarks_Grid17x17.md", "title": "Benchmarks.Grid17x17", "concepts": [{"name": "Benchmarks.Grid17x17", "description": "imports Basic; imported by 1 modules; domain: Semantics", "type": "gate"}, {"name": "Basic", "description": "dependency of Benchmarks.Grid17x17", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Basic", "Testing_TorsionalTest"], "summary": "Module (Benchmarks.Grid17x17) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Benchmarks_HadwigerNelson.md", "title": "Benchmarks.HadwigerNelson", "concepts": [{"name": "Benchmarks.HadwigerNelson", "description": "imports Basic, FixedPoint; domain: Semantics", "type": "gate"}, {"name": "Basic", "description": "dependency of Benchmarks.HadwigerNelson", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Benchmarks.HadwigerNelson", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Basic", "FixedPoint"], "summary": "Module (Benchmarks.HadwigerNelson) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Bind.md", "title": "Bind", "concepts": [{"name": "Bind", "description": "imports FixedPoint; imported by 63 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Bind", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Forgejo", "Github", "Hutter", "InteratomicPotential", "FieldSolver", "MISignal", "ThermodynamicSort", "GPUResourceManager", "NICProbe", "GeometricTopology", "NonEuclideanGeometry", "NNonEuclideanGeometry", "Curvature", "ManifoldNetworking", "TopologyNode", "BraidField", "TopologicalPersistence", "VoxelEncoding", "HutterMaximumCompression", "OpenWorm", "HormoneDeriv", "MorphicNeuralNetwork", "RelationMaskTrainer", "MorphicScalar", "DSPTranslation", "ENEContextTokenCache", "BitcoinMetaprobe", "BitcoinMetaprobeEval", "MinimalBitcoinL3", "MNLOGQuaternionBridge", "SLUQ", "JsonLSurfaceConnector", "Layer3Metaprobe", "Autobalance", "MechanicalLogic", "CacheSieve", "CognitiveLoad", "CollectiveManifoldInterface", "Containment", "CooperativeLUT", "FlagSort", "FuzzyAssociation", "MinimalLayer3Eval", "OEPI", "OmniNetwork", "Protocol", "ASICTopology", "YangMillsLattice", "YangMillsCompression", "YangMillsPerformance", "YangMillsLatticeSizing", "YangMillsCompressionBounds", "Layer3TransmissionModel", "HydrogenicPhiTorsionBraid", "SigmaGate", "CoulombComplexity", "WitnessGrammar", "AVM", "Physics_BindPhysics", "Physics_NBody", "Physics_QCLEnergy", "Testing_ExtremeParameterTest", "Testing_StructuralAttestation"], "summary": "Core foundational module (Bind) with high import fanout (63 dependents). Provides fundamental primitives for the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BindEngine.md", "title": "BindEngine", "concepts": [{"name": "BindEngine", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BindEngine", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (BindEngine) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Biology_BioRxivFormalization.md", "title": "Biology.BioRxivFormalization", "concepts": [{"name": "Biology.BioRxivFormalization", "description": "domain: Semantics", "type": "definition"}], "tags": ["biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (Biology.BioRxivFormalization) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Biology_QuaternionGenomic.md", "title": "Biology.QuaternionGenomic", "concepts": [{"name": "Biology.QuaternionGenomic", "description": "imports FixedPoint, GenomicCompression, ResonanceGradient; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Biology.QuaternionGenomic", "type": "definition"}, {"name": "GenomicCompression", "description": "dependency of Biology.QuaternionGenomic", "type": "definition"}, {"name": "ResonanceGradient", "description": "dependency of Biology.QuaternionGenomic", "type": "definition"}, {"name": "SLUG3", "description": "dependency of Biology.QuaternionGenomic", "type": "definition"}], "tags": ["biology", "genomics", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "GenomicCompression", "ResonanceGradient", "SLUG3", "SLUQQuaternionIntegration"], "summary": "Integration module (Biology.QuaternionGenomic) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Biology_RGFlowBioinformatics.md", "title": "Biology.RGFlowBioinformatics", "concepts": [{"name": "Biology.RGFlowBioinformatics", "description": "imports FixedPoint, SSMS; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Biology.RGFlowBioinformatics", "type": "definition"}, {"name": "SSMS", "description": "dependency of Biology.RGFlowBioinformatics", "type": "definition"}], "tags": ["biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "SSMS", "HutterPrizeRGFlow"], "summary": "Module (Biology.RGFlowBioinformatics) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BitcoinMetaprobe.md", "title": "BitcoinMetaprobe", "concepts": [{"name": "BitcoinMetaprobe", "description": "imports FixedPoint, Bind, ASICTopology; imported by 3 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BitcoinMetaprobe", "type": "definition"}, {"name": "Bind", "description": "dependency of BitcoinMetaprobe", "type": "definition"}, {"name": "ASICTopology", "description": "dependency of BitcoinMetaprobe", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "ASICTopology", "BitcoinMetaprobeEval", "MinimalBitcoinL3", "Layer3Metaprobe"], "summary": "Module (BitcoinMetaprobe) in the Semantics domain. Imports 3 module(s), imported by 3 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BitcoinMetaprobeEval.md", "title": "BitcoinMetaprobeEval", "concepts": [{"name": "BitcoinMetaprobeEval", "description": "imports FixedPoint, Bind, BitcoinMetaprobe; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BitcoinMetaprobeEval", "type": "definition"}, {"name": "Bind", "description": "dependency of BitcoinMetaprobeEval", "type": "definition"}, {"name": "BitcoinMetaprobe", "description": "dependency of BitcoinMetaprobeEval", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "BitcoinMetaprobe"], "summary": "Module (BitcoinMetaprobeEval) in the Semantics domain. Imports 3 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BitcoinRGFlow.md", "title": "BitcoinRGFlow", "concepts": [{"name": "BitcoinRGFlow", "description": "imports SSMS; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "SSMS", "description": "dependency of BitcoinRGFlow", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["SSMS", "Testing_BitcoinRGFlowTest"], "summary": "Module (BitcoinRGFlow) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BoundaryDynamics.md", "title": "BoundaryDynamics", "concepts": [{"name": "BoundaryDynamics", "description": "imports MagnetoPlasma, SpikingDynamics, ExoticSpacetime; imported by 6 modules; domain: Semantics", "type": "definition"}, {"name": "MagnetoPlasma", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "SpikingDynamics", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "ExoticSpacetime", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "ManifoldStructures", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "PhysicsScalar", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "RegimeCore", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "Errors", "description": "dependency of BoundaryDynamics", "type": "definition"}, {"name": "ElectromagneticSpectrum", "description": "dependency of BoundaryDynamics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["MagnetoPlasma", "SpikingDynamics", "ExoticSpacetime", "ManifoldStructures", "PhysicsScalar", "RegimeCore", "Errors", "ElectromagneticSpectrum", "MultiBodyField", "SensorField", "CosmicStructure", "ManifoldPotential", "SubstrateProfile", "CriticalityDynamics"], "summary": "Integration module (BoundaryDynamics) that composes 8 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BracketShellCount.md", "title": "BracketShellCount", "concepts": [{"name": "BracketShellCount", "description": "imports ShellModel, DynamicCanal, BraidBracket; domain: Semantics", "type": "definition"}, {"name": "ShellModel", "description": "dependency of BracketShellCount", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of BracketShellCount", "type": "definition"}, {"name": "BraidBracket", "description": "dependency of BracketShellCount", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["ShellModel", "DynamicCanal", "BraidBracket"], "summary": "Module (BracketShellCount) in the Semantics domain. Imports 3 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BraidBracket.md", "title": "BraidBracket", "concepts": [{"name": "BraidBracket", "description": "imports DynamicCanal; imported by 8 modules; domain: Semantics", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of BraidBracket", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["DynamicCanal", "MasterEquation", "ManifoldFlow", "BraidStrand", "BraidCross", "BracketShellCount", "Connectors", "Decoder", "Testing_CBFTests"], "summary": "Module (BraidBracket) in the Semantics domain. Imports 1 module(s), imported by 8 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BraidCross.md", "title": "BraidCross", "concepts": [{"name": "BraidCross", "description": "imports BraidBracket, FixedPoint, DynamicCanal; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "BraidBracket", "description": "dependency of BraidCross", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BraidCross", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of BraidCross", "type": "definition"}, {"name": "BraidStrand", "description": "dependency of BraidCross", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["BraidBracket", "FixedPoint", "DynamicCanal", "BraidStrand", "Testing_CBFTests"], "summary": "Integration module (BraidCross) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BraidField.md", "title": "BraidField", "concepts": [{"name": "BraidField", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BraidField", "type": "definition"}, {"name": "Bind", "description": "dependency of BraidField", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (BraidField) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BraidStrand.md", "title": "BraidStrand", "concepts": [{"name": "BraidStrand", "description": "imports BraidBracket, FixedPoint, DynamicCanal; imported by 4 modules; domain: Semantics", "type": "definition"}, {"name": "BraidBracket", "description": "dependency of BraidStrand", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BraidStrand", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of BraidStrand", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["BraidBracket", "FixedPoint", "DynamicCanal", "MasterEquation", "BraidCross", "Physics_NBody", "Testing_CBFTests"], "summary": "Module (BraidStrand) in the Semantics domain. Imports 3 module(s), imported by 4 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/BrainBoxDescriptor.md", "title": "BrainBoxDescriptor", "concepts": [{"name": "BrainBoxDescriptor", "description": "imports FixedPoint, Q0_16; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of BrainBoxDescriptor", "type": "definition"}, {"name": "Q0_16", "description": "dependency of BrainBoxDescriptor", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Q0_16"], "summary": "Module (BrainBoxDescriptor) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CacheSieve.md", "title": "CacheSieve", "concepts": [{"name": "CacheSieve", "description": "imports SLUQ, Bind; domain: Semantics", "type": "definition"}, {"name": "SLUQ", "description": "dependency of CacheSieve", "type": "definition"}, {"name": "Bind", "description": "dependency of CacheSieve", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["SLUQ", "Bind"], "summary": "Module (CacheSieve) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CalibratedKernel.md", "title": "CalibratedKernel", "concepts": [{"name": "CalibratedKernel", "description": "imports DomainKernel; domain: Semantics", "type": "definition"}, {"name": "DomainKernel", "description": "dependency of CalibratedKernel", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["DomainKernel"], "summary": "Module (CalibratedKernel) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Canon.md", "title": "Canon", "concepts": [{"name": "Canon", "description": "imports FixedPoint; imported by 7 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Canon", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Transition", "Evolution", "CanonAdapters", "CanonSerialization", "Pbacs", "Constitution", "Orchestrate"], "summary": "Module (Canon) in the Semantics domain. Imports 1 module(s), imported by 7 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CanonAdapters.md", "title": "CanonAdapters", "concepts": [{"name": "CanonAdapters", "description": "imports FixedPoint, Canon; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CanonAdapters", "type": "definition"}, {"name": "Canon", "description": "dependency of CanonAdapters", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Canon"], "summary": "Module (CanonAdapters) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CanonSerialization.md", "title": "CanonSerialization", "concepts": [{"name": "CanonSerialization", "description": "imports FixedPoint, Canon; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CanonSerialization", "type": "definition"}, {"name": "Canon", "description": "dependency of CanonSerialization", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Canon", "Prohibited"], "summary": "Module (CanonSerialization) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CanonicalInterval.md", "title": "CanonicalInterval", "concepts": [{"name": "CanonicalInterval", "description": "imports FixedPoint; imported by 3 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CanonicalInterval", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "SurfaceCore", "SolitonLighthouse", "EquationTranslation"], "summary": "Module (CanonicalInterval) in the Semantics domain. Imports 1 module(s), imported by 3 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CasimirMetaprobe.md", "title": "CasimirMetaprobe", "concepts": [{"name": "CasimirMetaprobe", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CasimirMetaprobe", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (CasimirMetaprobe) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CausalGeometry.md", "title": "CausalGeometry", "concepts": [{"name": "CausalGeometry", "description": "imports ManifoldStructures, PhysicsScalar, ManifoldPotential; imported by 2 modules; domain: Semantics", "type": "architecture"}, {"name": "ManifoldStructures", "description": "dependency of CausalGeometry", "type": "definition"}, {"name": "PhysicsScalar", "description": "dependency of CausalGeometry", "type": "definition"}, {"name": "ManifoldPotential", "description": "dependency of CausalGeometry", "type": "definition"}, {"name": "Errors", "description": "dependency of CausalGeometry", "type": "definition"}, {"name": "RegimeCore", "description": "dependency of CausalGeometry", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["ManifoldStructures", "PhysicsScalar", "ManifoldPotential", "Errors", "RegimeCore", "SensorField", "SubstrateProfile"], "summary": "Integration module (CausalGeometry) that composes 5 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CellSnowballConstraint.md", "title": "CellSnowballConstraint", "concepts": [{"name": "CellSnowballConstraint", "description": "imports FixedPoint; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CellSnowballConstraint", "type": "definition"}], "tags": ["cell-biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "HumanNeuralCompression"], "summary": "Module (CellSnowballConstraint) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ChatLogConversion.md", "title": "ChatLogConversion", "concepts": [{"name": "ChatLogConversion", "description": "imports FixedPoint, Substrate; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of ChatLogConversion", "type": "definition"}, {"name": "Substrate", "description": "dependency of ChatLogConversion", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Substrate"], "summary": "Module (ChatLogConversion) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ClassicalEuclideanGeometry.md", "title": "ClassicalEuclideanGeometry", "concepts": [{"name": "ClassicalEuclideanGeometry", "description": "domain: Semantics", "type": "architecture"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ClassicalEuclideanGeometry) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CodonOTOM.md", "title": "CodonOTOM", "concepts": [{"name": "CodonOTOM", "description": "imported by 1 modules; domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics", "sink"], "layer": "Documentation", "dependencies": ["CodonPeptideConsistency"], "summary": "Module (CodonOTOM) in the Semantics domain. imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CodonPeptideConsistency.md", "title": "CodonPeptideConsistency", "concepts": [{"name": "CodonPeptideConsistency", "description": "imports CodonOTOM, PeptideMoE; domain: Semantics", "type": "definition"}, {"name": "CodonOTOM", "description": "dependency of CodonPeptideConsistency", "type": "definition"}, {"name": "PeptideMoE", "description": "dependency of CodonPeptideConsistency", "type": "definition"}], "tags": ["ecology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["CodonOTOM", "PeptideMoE"], "summary": "Module (CodonPeptideConsistency) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CognitiveLoad.md", "title": "CognitiveLoad", "concepts": [{"name": "CognitiveLoad", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CognitiveLoad", "type": "definition"}, {"name": "Bind", "description": "dependency of CognitiveLoad", "type": "definition"}], "tags": ["cognitive-science", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (CognitiveLoad) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CognitiveMorphemics.md", "title": "CognitiveMorphemics", "concepts": [{"name": "CognitiveMorphemics", "description": "imports Quaternion, TorsionalPIST, DynamicCanal; domain: Semantics", "type": "definition"}, {"name": "Quaternion", "description": "dependency of CognitiveMorphemics", "type": "definition"}, {"name": "TorsionalPIST", "description": "dependency of CognitiveMorphemics", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of CognitiveMorphemics", "type": "definition"}], "tags": ["cognitive-science", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Quaternion", "TorsionalPIST", "DynamicCanal"], "summary": "Module (CognitiveMorphemics) in the Semantics domain. Imports 3 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CollectiveManifoldInterface.md", "title": "CollectiveManifoldInterface", "concepts": [{"name": "CollectiveManifoldInterface", "description": "imports MorphicScalar, Bind, S3C; domain: Semantics", "type": "definition"}, {"name": "MorphicScalar", "description": "dependency of CollectiveManifoldInterface", "type": "definition"}, {"name": "Bind", "description": "dependency of CollectiveManifoldInterface", "type": "definition"}, {"name": "S3C", "description": "dependency of CollectiveManifoldInterface", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["MorphicScalar", "Bind", "S3C"], "summary": "Module (CollectiveManifoldInterface) in the Semantics domain. Imports 3 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Bind.md", "title": "Components.Bind", "concepts": [{"name": "Components.Bind", "description": "imports FixedPoint, Components_Core, Components_Quaternion; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Components.Bind", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.Bind", "type": "definition"}, {"name": "Components_Quaternion", "description": "dependency of Components.Bind", "type": "definition"}, {"name": "Components_Gradient", "description": "dependency of Components.Bind", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Components_Core", "Components_Quaternion", "Components_Gradient", "Components_Composition", "Components_Demo"], "summary": "Integration module (Components.Bind) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Composition.md", "title": "Components.Composition", "concepts": [{"name": "Components.Composition", "description": "imports Components_Core, Components_Quaternion, Components_Bind; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.Composition", "type": "definition"}, {"name": "Components_Quaternion", "description": "dependency of Components.Composition", "type": "definition"}, {"name": "Components_Bind", "description": "dependency of Components.Composition", "type": "definition"}, {"name": "Components_Gradient", "description": "dependency of Components.Composition", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Components_Core", "Components_Quaternion", "Components_Bind", "Components_Gradient", "Components_Demo"], "summary": "Integration module (Components.Composition) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Core.md", "title": "Components.Core", "concepts": [{"name": "Components.Core", "description": "imports FixedPoint; imported by 7 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Components.Core", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Components_Bind", "Components_Composition", "Components_Demo", "Components_Gradient", "Components_Pipeline", "Components_Quaternion", "Components_State"], "summary": "Module (Components.Core) in the Semantics domain. Imports 1 module(s), imported by 7 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Demo.md", "title": "Components.Demo", "concepts": [{"name": "Components.Demo", "description": "imports Components_Quaternion, Components_Gradient, Components_Core; domain: Semantics", "type": "definition"}, {"name": "Components_Quaternion", "description": "dependency of Components.Demo", "type": "definition"}, {"name": "Components_Gradient", "description": "dependency of Components.Demo", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.Demo", "type": "definition"}, {"name": "Components_Pipeline", "description": "dependency of Components.Demo", "type": "definition"}, {"name": "Components_Bind", "description": "dependency of Components.Demo", "type": "definition"}, {"name": "Components_Composition", "description": "dependency of Components.Demo", "type": "definition"}, {"name": "Components_State", "description": "dependency of Components.Demo", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Components_Quaternion", "Components_Gradient", "Components_Core", "Components_Pipeline", "Components_Bind", "Components_Composition", "Components_State"], "summary": "Integration module (Components.Demo) that composes 7 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Gradient.md", "title": "Components.Gradient", "concepts": [{"name": "Components.Gradient", "description": "imports FixedPoint, Components_Core; imported by 3 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Components.Gradient", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.Gradient", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Components_Core", "Components_Bind", "Components_Composition", "Components_Demo"], "summary": "Module (Components.Gradient) in the Semantics domain. Imports 2 module(s), imported by 3 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Pipeline.md", "title": "Components.Pipeline", "concepts": [{"name": "Components.Pipeline", "description": "imports FixedPoint, Components_Core; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Components.Pipeline", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.Pipeline", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Components_Core", "Components_Demo"], "summary": "Module (Components.Pipeline) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_Quaternion.md", "title": "Components.Quaternion", "concepts": [{"name": "Components.Quaternion", "description": "imports FixedPoint, Components_Core; imported by 3 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Components.Quaternion", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.Quaternion", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Components_Core", "Components_Bind", "Components_Composition", "Components_Demo"], "summary": "Module (Components.Quaternion) in the Semantics domain. Imports 2 module(s), imported by 3 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Components_State.md", "title": "Components.State", "concepts": [{"name": "Components.State", "description": "imports FixedPoint, Components_Core; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Components.State", "type": "definition"}, {"name": "Components_Core", "description": "dependency of Components.State", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Components_Core", "Components_Demo"], "summary": "Module (Components.State) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CompressionControl.md", "title": "CompressionControl", "concepts": [{"name": "CompressionControl", "description": "imports FixedPoint, CompressionMechanicsBridge; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CompressionControl", "type": "definition"}, {"name": "CompressionMechanicsBridge", "description": "dependency of CompressionControl", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "CompressionMechanicsBridge"], "summary": "Module (CompressionControl) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CompressionEvidence.md", "title": "CompressionEvidence", "concepts": [{"name": "CompressionEvidence", "description": "imports FixedPoint, OrthogonalAmmr; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CompressionEvidence", "type": "definition"}, {"name": "OrthogonalAmmr", "description": "dependency of CompressionEvidence", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "OrthogonalAmmr"], "summary": "Module (CompressionEvidence) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CompressionLossComparison.md", "title": "CompressionLossComparison", "concepts": [{"name": "CompressionLossComparison", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CompressionLossComparison", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (CompressionLossComparison) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CompressionMaximization.md", "title": "CompressionMaximization", "concepts": [{"name": "CompressionMaximization", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (CompressionMaximization) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CompressionMechanics.md", "title": "CompressionMechanics", "concepts": [{"name": "CompressionMechanics", "description": "imports FixedPoint, AtomicResolution, EnvironmentMechanics; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CompressionMechanics", "type": "definition"}, {"name": "AtomicResolution", "description": "dependency of CompressionMechanics", "type": "definition"}, {"name": "EnvironmentMechanics", "description": "dependency of CompressionMechanics", "type": "definition"}, {"name": "LandauerCompression", "description": "dependency of CompressionMechanics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "AtomicResolution", "EnvironmentMechanics", "LandauerCompression", "DefectMechanics"], "summary": "Integration module (CompressionMechanics) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CompressionMechanicsBridge.md", "title": "CompressionMechanicsBridge", "concepts": [{"name": "CompressionMechanicsBridge", "description": "imports FixedPoint, DefectMechanics; imported by 1 modules; domain: Semantics", "type": "bridge"}, {"name": "FixedPoint", "description": "dependency of CompressionMechanicsBridge", "type": "definition"}, {"name": "DefectMechanics", "description": "dependency of CompressionMechanicsBridge", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "DefectMechanics", "CompressionControl"], "summary": "Module (CompressionMechanicsBridge) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ComputationProfile.md", "title": "ComputationProfile", "concepts": [{"name": "ComputationProfile", "description": "imports FixedPoint, DynamicCanal; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of ComputationProfile", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of ComputationProfile", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "DynamicCanal", "EquationTranslation"], "summary": "Module (ComputationProfile) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ConflictResolution.md", "title": "ConflictResolution", "concepts": [{"name": "ConflictResolution", "description": "imports GossipFlipMessage, TileStateMachine, TileFlipConsensus; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "GossipFlipMessage", "description": "dependency of ConflictResolution", "type": "definition"}, {"name": "TileStateMachine", "description": "dependency of ConflictResolution", "type": "definition"}, {"name": "TileFlipConsensus", "description": "dependency of ConflictResolution", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GossipFlipMessage", "TileStateMachine", "TileFlipConsensus", "FaultTolerance"], "summary": "Module (ConflictResolution) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Connectors.md", "title": "Connectors", "concepts": [{"name": "Connectors", "description": "imports ManifoldFlow, LandauerCompression, BraidBracket; imported by 2 modules; domain: Semantics", "type": "protocol"}, {"name": "ManifoldFlow", "description": "dependency of Connectors", "type": "definition"}, {"name": "LandauerCompression", "description": "dependency of Connectors", "type": "definition"}, {"name": "BraidBracket", "description": "dependency of Connectors", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of Connectors", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["ManifoldFlow", "LandauerCompression", "BraidBracket", "DynamicCanal", "Decoder", "Testing_SilhouetteTest"], "summary": "Integration module (Connectors) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Constitution.md", "title": "Constitution", "concepts": [{"name": "Constitution", "description": "imports Atoms, Canon, Decomposition; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "Atoms", "description": "dependency of Constitution", "type": "definition"}, {"name": "Canon", "description": "dependency of Constitution", "type": "definition"}, {"name": "Decomposition", "description": "dependency of Constitution", "type": "definition"}, {"name": "Substrate", "description": "dependency of Constitution", "type": "definition"}, {"name": "Projections", "description": "dependency of Constitution", "type": "definition"}, {"name": "Diagnostics", "description": "dependency of Constitution", "type": "definition"}, {"name": "Graph", "description": "dependency of Constitution", "type": "definition"}, {"name": "Evolution", "description": "dependency of Constitution", "type": "definition"}, {"name": "ScalarCollapse", "description": "dependency of Constitution", "type": "definition"}, {"name": "Universality", "description": "dependency of Constitution", "type": "definition"}, {"name": "Witness", "description": "dependency of Constitution", "type": "definition"}, {"name": "Path", "description": "dependency of Constitution", "type": "definition"}, {"name": "Lemmas", "description": "dependency of Constitution", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Atoms", "Canon", "Decomposition", "Substrate", "Projections", "Diagnostics", "Graph", "Evolution", "ScalarCollapse", "Universality", "Witness", "Path", "Lemmas", "KillerCriterion", "Prohibited"], "summary": "Integration module (Constitution) that composes 13 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Containment.md", "title": "Containment", "concepts": [{"name": "Containment", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Containment", "type": "definition"}, {"name": "Bind", "description": "dependency of Containment", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (Containment) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CooperativeLUT.md", "title": "CooperativeLUT", "concepts": [{"name": "CooperativeLUT", "description": "imports Basic, Bind, SSMS; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "Basic", "description": "dependency of CooperativeLUT", "type": "definition"}, {"name": "Bind", "description": "dependency of CooperativeLUT", "type": "definition"}, {"name": "SSMS", "description": "dependency of CooperativeLUT", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Basic", "Bind", "SSMS", "SwarmRGFlow"], "summary": "Module (CooperativeLUT) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CosmicStructure.md", "title": "CosmicStructure", "concepts": [{"name": "CosmicStructure", "description": "imports BoundaryDynamics, MagnetoPlasma, MultiBodyField; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "BoundaryDynamics", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "MagnetoPlasma", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "MultiBodyField", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "ManifoldStructures", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "PhysicsScalar", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "CriticalityDynamics", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "RegimeCore", "description": "dependency of CosmicStructure", "type": "definition"}, {"name": "ElectromagneticSpectrum", "description": "dependency of CosmicStructure", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["BoundaryDynamics", "MagnetoPlasma", "MultiBodyField", "ManifoldStructures", "FixedPoint", "PhysicsScalar", "CriticalityDynamics", "RegimeCore", "ElectromagneticSpectrum", "ManifoldPotential"], "summary": "Integration module (CosmicStructure) that composes 9 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CostEffectiveVerification.md", "title": "CostEffectiveVerification", "concepts": [{"name": "CostEffectiveVerification", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (CostEffectiveVerification) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CouchFilterNormalization.md", "title": "CouchFilterNormalization", "concepts": [{"name": "CouchFilterNormalization", "description": "imports AbelianSandpileRouting, Genome18; domain: Semantics", "type": "definition"}, {"name": "AbelianSandpileRouting", "description": "dependency of CouchFilterNormalization", "type": "definition"}, {"name": "Genome18", "description": "dependency of CouchFilterNormalization", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["AbelianSandpileRouting", "Genome18"], "summary": "Module (CouchFilterNormalization) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CoulombComplexity.md", "title": "CoulombComplexity", "concepts": [{"name": "CoulombComplexity", "description": "imports FixedPoint, Bind, SigmaGate; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CoulombComplexity", "type": "definition"}, {"name": "Bind", "description": "dependency of CoulombComplexity", "type": "definition"}, {"name": "SigmaGate", "description": "dependency of CoulombComplexity", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "SigmaGate", "WitnessGrammar"], "summary": "Module (CoulombComplexity) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CriticalityDynamics.md", "title": "CriticalityDynamics", "concepts": [{"name": "CriticalityDynamics", "description": "imports BoundaryDynamics, SpikingDynamics, ExoticSpacetime; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "BoundaryDynamics", "description": "dependency of CriticalityDynamics", "type": "definition"}, {"name": "SpikingDynamics", "description": "dependency of CriticalityDynamics", "type": "definition"}, {"name": "ExoticSpacetime", "description": "dependency of CriticalityDynamics", "type": "definition"}, {"name": "ManifoldStructures", "description": "dependency of CriticalityDynamics", "type": "definition"}, {"name": "PhysicsScalar", "description": "dependency of CriticalityDynamics", "type": "definition"}, {"name": "RegimeCore", "description": "dependency of CriticalityDynamics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["BoundaryDynamics", "SpikingDynamics", "ExoticSpacetime", "ManifoldStructures", "PhysicsScalar", "RegimeCore", "CosmicStructure", "ManifoldPotential"], "summary": "Integration module (CriticalityDynamics) that composes 6 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CrossDimensionalFilter.md", "title": "CrossDimensionalFilter", "concepts": [{"name": "CrossDimensionalFilter", "description": "imports FixedPoint, GeometricTopology; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CrossDimensionalFilter", "type": "definition"}, {"name": "GeometricTopology", "description": "dependency of CrossDimensionalFilter", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "GeometricTopology"], "summary": "Module (CrossDimensionalFilter) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/CrossModalCompression.md", "title": "CrossModalCompression", "concepts": [{"name": "CrossModalCompression", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of CrossModalCompression", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (CrossModalCompression) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Curvature.md", "title": "Curvature", "concepts": [{"name": "Curvature", "description": "imports FixedPoint, Graph, Bind; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Curvature", "type": "definition"}, {"name": "Graph", "description": "dependency of Curvature", "type": "definition"}, {"name": "Bind", "description": "dependency of Curvature", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Graph", "Bind", "TopologyResilience"], "summary": "Module (Curvature) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DSPTranslation.md", "title": "DSPTranslation", "concepts": [{"name": "DSPTranslation", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DSPTranslation", "type": "definition"}, {"name": "Bind", "description": "dependency of DSPTranslation", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (DSPTranslation) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DecagonZetaCrossing.md", "title": "DecagonZetaCrossing", "concepts": [{"name": "DecagonZetaCrossing", "description": "imports FixedPoint; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DecagonZetaCrossing", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "MassNumberLinter"], "summary": "Module (DecagonZetaCrossing) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Decoder.md", "title": "Decoder", "concepts": [{"name": "Decoder", "description": "imports Connectors, BraidBracket, FixedPoint; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "Connectors", "description": "dependency of Decoder", "type": "definition"}, {"name": "BraidBracket", "description": "dependency of Decoder", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Decoder", "type": "definition"}, {"name": "DynamicCanal", "description": "dependency of Decoder", "type": "definition"}, {"name": "SLUG3", "description": "dependency of Decoder", "type": "definition"}], "tags": ["ecology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Connectors", "BraidBracket", "FixedPoint", "DynamicCanal", "SLUG3", "Testing_SilhouetteTest"], "summary": "Integration module (Decoder) that composes 5 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Decomposition.md", "title": "Decomposition", "concepts": [{"name": "Decomposition", "description": "imports Atoms, Lemmas; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "Atoms", "description": "dependency of Decomposition", "type": "definition"}, {"name": "Lemmas", "description": "dependency of Decomposition", "type": "definition"}], "tags": ["ecology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Atoms", "Lemmas", "ScalarCollapse", "Constitution"], "summary": "Module (Decomposition) in the Semantics domain. Imports 2 module(s), imported by 2 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DefectMechanics.md", "title": "DefectMechanics", "concepts": [{"name": "DefectMechanics", "description": "imports FixedPoint, CompressionMechanics; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DefectMechanics", "type": "definition"}, {"name": "CompressionMechanics", "description": "dependency of DefectMechanics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "CompressionMechanics", "CompressionMechanicsBridge"], "summary": "Module (DefectMechanics) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DeltaGCLCompression.md", "title": "DeltaGCLCompression", "concepts": [{"name": "DeltaGCLCompression", "description": "imports FixedPoint, EntropyPhaseEngine; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DeltaGCLCompression", "type": "definition"}, {"name": "EntropyPhaseEngine", "description": "dependency of DeltaGCLCompression", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "EntropyPhaseEngine", "Testing_DeltaGCLBenchmark"], "summary": "Module (DeltaGCLCompression) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Diagnostics.md", "title": "Diagnostics", "concepts": [{"name": "Diagnostics", "description": "imports Path; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "Path", "description": "dependency of Diagnostics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Path", "Constitution"], "summary": "Module (Diagnostics) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DiffusionSNRBias.md", "title": "DiffusionSNRBias", "concepts": [{"name": "DiffusionSNRBias", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (DiffusionSNRBias) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DistributedTraining.md", "title": "DistributedTraining", "concepts": [{"name": "DistributedTraining", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (DistributedTraining) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DlessScalarField.md", "title": "DlessScalarField", "concepts": [{"name": "DlessScalarField", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (DlessScalarField) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DomainKernel.md", "title": "DomainKernel", "concepts": [{"name": "DomainKernel", "description": "imports UniversalCoupling, SSMS_nD; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "UniversalCoupling", "description": "dependency of DomainKernel", "type": "definition"}, {"name": "SSMS_nD", "description": "dependency of DomainKernel", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["UniversalCoupling", "SSMS_nD", "CalibratedKernel"], "summary": "Module (DomainKernel) in the Semantics domain. Imports 2 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DomainModelIntegration.md", "title": "DomainModelIntegration", "concepts": [{"name": "DomainModelIntegration", "description": "imported by 2 modules; domain: Semantics", "type": "algorithm"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["SubagentOrchestrator", "OmnidirectionalInterface"], "summary": "Module (DomainModelIntegration) in the Semantics domain. imported by 2 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DomainRegistryAlignment.md", "title": "DomainRegistryAlignment", "concepts": [{"name": "DomainRegistryAlignment", "description": "domain: Semantics", "type": "tool"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (DomainRegistryAlignment) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DomainState.md", "title": "DomainState", "concepts": [{"name": "DomainState", "description": "imports FixedPoint; imported by 4 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DomainState", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "ManifoldPotential", "SubstrateProfile", "EquationTranslation", "RegimeCore"], "summary": "Module (DomainState) in the Semantics domain. Imports 1 module(s), imported by 4 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DspErasureCoding.md", "title": "DspErasureCoding", "concepts": [{"name": "DspErasureCoding", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DspErasureCoding", "type": "definition"}], "tags": ["ecology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (DspErasureCoding) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/DynamicCanal.md", "title": "DynamicCanal", "concepts": [{"name": "DynamicCanal", "description": "imports Tactics, FixedPoint; imported by 21 modules; domain: Semantics", "type": "definition"}, {"name": "Tactics", "description": "dependency of DynamicCanal", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of DynamicCanal", "type": "definition"}], "tags": ["hub", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Tactics", "FixedPoint", "MasterEquation", "ManifoldFlow", "BraidStrand", "BraidBracket", "BraidCross", "RotationQUBO", "NetworkRAM", "Quaternion", "BracketShellCount", "Connectors", "TorsionalPIST", "HyperFlow", "CognitiveMorphemics", "Decoder", "ComputationProfile", "LocalExpansion", "Timing", "Physics_NBody", "Physics_StringStarConstants", "Testing_SilhouetteTest", "Testing_TorsionalTest"], "summary": "Core foundational module (DynamicCanal) with high import fanout (21 dependents). Provides fundamental primitives for the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENEApi.md", "title": "ENEApi", "concepts": [{"name": "ENEApi", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ENEApi) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENEContextTokenCache.md", "title": "ENEContextTokenCache", "concepts": [{"name": "ENEContextTokenCache", "description": "imports Bind; domain: Semantics", "type": "definition"}, {"name": "Bind", "description": "dependency of ENEContextTokenCache", "type": "definition"}], "tags": ["ecology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module (ENEContextTokenCache) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENECredentialEnvelope.md", "title": "ENECredentialEnvelope", "concepts": [{"name": "ENECredentialEnvelope", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ENECredentialEnvelope) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENEDistributedNode.md", "title": "ENEDistributedNode", "concepts": [{"name": "ENEDistributedNode", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ENEDistributedNode) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENELayerMetaprobe.md", "title": "ENELayerMetaprobe", "concepts": [{"name": "ENELayerMetaprobe", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ENELayerMetaprobe) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENEMemoryAtlasMetaprobe.md", "title": "ENEMemoryAtlasMetaprobe", "concepts": [{"name": "ENEMemoryAtlasMetaprobe", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of ENEMemoryAtlasMetaprobe", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (ENEMemoryAtlasMetaprobe) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ENESecurity.md", "title": "ENESecurity", "concepts": [{"name": "ENESecurity", "description": "imports OTOMOntology; domain: Semantics", "type": "definition"}, {"name": "OTOMOntology", "description": "dependency of ENESecurity", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["OTOMOntology"], "summary": "Module (ENESecurity) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EfficiencyAnalysis.md", "title": "EfficiencyAnalysis", "concepts": [{"name": "EfficiencyAnalysis", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of EfficiencyAnalysis", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (EfficiencyAnalysis) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ElectromagneticSpectrum.md", "title": "ElectromagneticSpectrum", "concepts": [{"name": "ElectromagneticSpectrum", "description": "imported by 9 modules; domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["MultiBodyField", "SensorField", "MagnetoPlasma", "BoundaryDynamics", "CosmicStructure", "ManifoldStructures", "SpikingDynamics", "SubstrateProfile", "RegimeCore"], "summary": "Module (ElectromagneticSpectrum) in the Semantics domain. imported by 9 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ElectronOrbitalConstraint.md", "title": "ElectronOrbitalConstraint", "concepts": [{"name": "ElectronOrbitalConstraint", "description": "imports FixedPoint; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of ElectronOrbitalConstraint", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "HumanNeuralCompression"], "summary": "Module (ElectronOrbitalConstraint) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ElectrostaticsMetaprobe.md", "title": "ElectrostaticsMetaprobe", "concepts": [{"name": "ElectrostaticsMetaprobe", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of ElectrostaticsMetaprobe", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (ElectrostaticsMetaprobe) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EnergyGradientSignal.md", "title": "EnergyGradientSignal", "concepts": [{"name": "EnergyGradientSignal", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (EnergyGradientSignal) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EntropyMeasures.md", "title": "EntropyMeasures", "concepts": [{"name": "EntropyMeasures", "description": "imports Tactics, FixedPoint, OrthogonalAmmr; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "Tactics", "description": "dependency of EntropyMeasures", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of EntropyMeasures", "type": "definition"}, {"name": "OrthogonalAmmr", "description": "dependency of EntropyMeasures", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Tactics", "FixedPoint", "OrthogonalAmmr", "EntropyPhaseEngine", "SigmaGateEntropy"], "summary": "Module (EntropyMeasures) in the Semantics domain. Imports 3 module(s), imported by 2 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EntropyPhaseEngine.md", "title": "EntropyPhaseEngine", "concepts": [{"name": "EntropyPhaseEngine", "description": "imports EntropyMeasures, FixedPoint, QuaternionScalar; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "EntropyMeasures", "description": "dependency of EntropyPhaseEngine", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of EntropyPhaseEngine", "type": "definition"}, {"name": "QuaternionScalar", "description": "dependency of EntropyPhaseEngine", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["EntropyMeasures", "FixedPoint", "QuaternionScalar", "DeltaGCLCompression"], "summary": "Module (EntropyPhaseEngine) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EnvironmentMechanics.md", "title": "EnvironmentMechanics", "concepts": [{"name": "EnvironmentMechanics", "description": "imports FixedPoint, OrthogonalAmmr, LandauerCompression; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of EnvironmentMechanics", "type": "definition"}, {"name": "OrthogonalAmmr", "description": "dependency of EnvironmentMechanics", "type": "definition"}, {"name": "LandauerCompression", "description": "dependency of EnvironmentMechanics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "OrthogonalAmmr", "LandauerCompression", "AtomicResolution", "CompressionMechanics"], "summary": "Module (EnvironmentMechanics) in the Semantics domain. Imports 3 module(s), imported by 2 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EpistemicHonesty.md", "title": "EpistemicHonesty", "concepts": [{"name": "EpistemicHonesty", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (EpistemicHonesty) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EqWorldMetaprobe.md", "title": "EqWorldMetaprobe", "concepts": [{"name": "EqWorldMetaprobe", "description": "domain: Semantics", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (EqWorldMetaprobe) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EquationFractalEncoding.md", "title": "EquationFractalEncoding", "concepts": [{"name": "EquationFractalEncoding", "description": "domain: Semantics", "type": "primitive"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (EquationFractalEncoding) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EquationTranslation.md", "title": "EquationTranslation", "concepts": [{"name": "EquationTranslation", "description": "imports RaycastField, LocalExpansion, LocalDerivative; domain: Semantics", "type": "definition"}, {"name": "RaycastField", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "LocalExpansion", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "LocalDerivative", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "CanonicalInterval", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "ComputationProfile", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "Surface", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "DomainState", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "HyperFlow", "description": "dependency of EquationTranslation", "type": "definition"}, {"name": "MetricCore", "description": "dependency of EquationTranslation", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["RaycastField", "LocalExpansion", "LocalDerivative", "CanonicalInterval", "ComputationProfile", "Surface", "DomainState", "HyperFlow", "MetricCore"], "summary": "Integration module (EquationTranslation) that composes 9 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Errors.md", "title": "Errors", "concepts": [{"name": "Errors", "description": "imports OrderedFieldTokens, PhysicsScalar, RegimeCore; imported by 5 modules; domain: Semantics", "type": "definition"}, {"name": "OrderedFieldTokens", "description": "dependency of Errors", "type": "definition"}, {"name": "PhysicsScalar", "description": "dependency of Errors", "type": "definition"}, {"name": "RegimeCore", "description": "dependency of Errors", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["OrderedFieldTokens", "PhysicsScalar", "RegimeCore", "SensorField", "BoundaryDynamics", "ManifoldStructures", "ManifoldPotential", "CausalGeometry"], "summary": "Module (Errors) in the Semantics domain. Imports 3 module(s), imported by 5 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EtaMoE.md", "title": "EtaMoE", "concepts": [{"name": "EtaMoE", "description": "imports SwarmMoERewiring; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "SwarmMoERewiring", "description": "dependency of EtaMoE", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["SwarmMoERewiring"], "summary": "Module (EtaMoE) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/EthereumRGFlow.md", "title": "EthereumRGFlow", "concepts": [{"name": "EthereumRGFlow", "description": "imports SSMS; domain: Semantics", "type": "definition"}, {"name": "SSMS", "description": "dependency of EthereumRGFlow", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["SSMS"], "summary": "Module (EthereumRGFlow) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Evolution.md", "title": "Evolution", "concepts": [{"name": "Evolution", "description": "imports Witness, FixedPoint, Canon; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "Witness", "description": "dependency of Evolution", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Evolution", "type": "definition"}, {"name": "Canon", "description": "dependency of Evolution", "type": "definition"}], "tags": ["evolution", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Witness", "FixedPoint", "Canon", "Constitution"], "summary": "Module (Evolution) in the Semantics domain. Imports 3 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ExoticSpacetime.md", "title": "ExoticSpacetime", "concepts": [{"name": "ExoticSpacetime", "description": "imports PhysicsScalar, PhysicsLagrangian, RegimeCore; imported by 6 modules; domain: Semantics", "type": "definition"}, {"name": "PhysicsScalar", "description": "dependency of ExoticSpacetime", "type": "definition"}, {"name": "PhysicsLagrangian", "description": "dependency of ExoticSpacetime", "type": "definition"}, {"name": "RegimeCore", "description": "dependency of ExoticSpacetime", "type": "definition"}, {"name": "PhysicsEuclidean", "description": "dependency of ExoticSpacetime", "type": "definition"}], "tags": ["manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["PhysicsScalar", "PhysicsLagrangian", "RegimeCore", "PhysicsEuclidean", "MultiBodyField", "BoundaryDynamics", "ManifoldStructures", "ManifoldPotential", "SpikingDynamics", "CriticalityDynamics"], "summary": "Integration module (ExoticSpacetime) that composes 4 dependencies. Bridges multiple subsystems in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ExperienceCompression.md", "title": "ExperienceCompression", "concepts": [{"name": "ExperienceCompression", "description": "domain: Semantics", "type": "definition"}], "tags": ["ecology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module (ExperienceCompression) with no import dependencies. Self-contained implementation in the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_AdvancedBioDynamics.md", "title": "Extensions.AdvancedBioDynamics", "concepts": [{"name": "Extensions.AdvancedBioDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.AdvancedBioDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.AdvancedBioDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.AdvancedBioDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: AdvancedBioDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_AnimalSignalingLaws.md", "title": "Extensions.AnimalSignalingLaws", "concepts": [{"name": "Extensions.AnimalSignalingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.AnimalSignalingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.AnimalSignalingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.AnimalSignalingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: AnimalSignalingLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_AnimalSocialAerodynamics.md", "title": "Extensions.AnimalSocialAerodynamics", "concepts": [{"name": "Extensions.AnimalSocialAerodynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.AnimalSocialAerodynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.AnimalSocialAerodynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.AnimalSocialAerodynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "social-science"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: AnimalSocialAerodynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_AuditoryMaskingDynamics.md", "title": "Extensions.AuditoryMaskingDynamics", "concepts": [{"name": "Extensions.AuditoryMaskingDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.AuditoryMaskingDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.AuditoryMaskingDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.AuditoryMaskingDynamics", "type": "definition"}], "tags": ["acoustics", "biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: AuditoryMaskingDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_AuditoryMechanicsLaws.md", "title": "Extensions.AuditoryMechanicsLaws", "concepts": [{"name": "Extensions.AuditoryMechanicsLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.AuditoryMechanicsLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.AuditoryMechanicsLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.AuditoryMechanicsLaws", "type": "definition"}], "tags": ["acoustics", "biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: AuditoryMechanicsLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_AuditoryPerceptionLaws.md", "title": "Extensions.AuditoryPerceptionLaws", "concepts": [{"name": "Extensions.AuditoryPerceptionLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.AuditoryPerceptionLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.AuditoryPerceptionLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.AuditoryPerceptionLaws", "type": "definition"}], "tags": ["acoustics", "biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: AuditoryPerceptionLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BettiSwoosh.md", "title": "Extensions.BettiSwoosh", "concepts": [{"name": "Extensions.BettiSwoosh", "description": "imports FixedPoint; domain: Semantics", "type": "spec"}, {"name": "FixedPoint", "description": "dependency of Extensions.BettiSwoosh", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Biological/physical dynamics extension module: BettiSwoosh. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BioComplexSystems.md", "title": "Extensions.BioComplexSystems", "concepts": [{"name": "Extensions.BioComplexSystems", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BioComplexSystems", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BioComplexSystems", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BioComplexSystems", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BioComplexSystems. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BioDeepDive.md", "title": "Extensions.BioDeepDive", "concepts": [{"name": "Extensions.BioDeepDive", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BioDeepDive", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BioDeepDive", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BioDeepDive", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BioDeepDive. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BioElectricalImpedanceLaws.md", "title": "Extensions.BioElectricalImpedanceLaws", "concepts": [{"name": "Extensions.BioElectricalImpedanceLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BioElectricalImpedanceLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BioElectricalImpedanceLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BioElectricalImpedanceLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BioElectricalImpedanceLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BioElectroThermodynamics.md", "title": "Extensions.BioElectroThermodynamics", "concepts": [{"name": "Extensions.BioElectroThermodynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BioElectroThermodynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BioElectroThermodynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BioElectroThermodynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "thermodynamics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BioElectroThermodynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BioPhotonicsDynamics.md", "title": "Extensions.BioPhotonicsDynamics", "concepts": [{"name": "Extensions.BioPhotonicsDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BioPhotonicsDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BioPhotonicsDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BioPhotonicsDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "photonics", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BioPhotonicsDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BioThermoTopology.md", "title": "Extensions.BioThermoTopology", "concepts": [{"name": "Extensions.BioThermoTopology", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "architecture"}, {"name": "GeneticCode", "description": "dependency of Extensions.BioThermoTopology", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BioThermoTopology", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BioThermoTopology", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "thermodynamics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BioThermoTopology. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalComputingLaws.md", "title": "Extensions.BiologicalComputingLaws", "concepts": [{"name": "Extensions.BiologicalComputingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalComputingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalComputingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalComputingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalComputingLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalControlDynamics.md", "title": "Extensions.BiologicalControlDynamics", "concepts": [{"name": "Extensions.BiologicalControlDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalControlDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalControlDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalControlDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalControlDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalExergyDynamics.md", "title": "Extensions.BiologicalExergyDynamics", "concepts": [{"name": "Extensions.BiologicalExergyDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalExergyDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalExergyDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalExergyDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalExergyDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalExtremalLaws.md", "title": "Extensions.BiologicalExtremalLaws", "concepts": [{"name": "Extensions.BiologicalExtremalLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalExtremalLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalExtremalLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalExtremalLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalExtremalLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalInformationLaws.md", "title": "Extensions.BiologicalInformationLaws", "concepts": [{"name": "Extensions.BiologicalInformationLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalInformationLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalInformationLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalInformationLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalInformationLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalIntegrityLaws.md", "title": "Extensions.BiologicalIntegrityLaws", "concepts": [{"name": "Extensions.BiologicalIntegrityLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalIntegrityLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalIntegrityLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalIntegrityLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalIntegrityLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalInvariants.md", "title": "Extensions.BiologicalInvariants", "concepts": [{"name": "Extensions.BiologicalInvariants", "description": "domain: Semantics", "type": "spec"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Biological/physical dynamics extension module: BiologicalInvariants. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalRegulationDynamics.md", "title": "Extensions.BiologicalRegulationDynamics", "concepts": [{"name": "Extensions.BiologicalRegulationDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalRegulationDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalRegulationDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalRegulationDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalRegulationDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalRhythmLaws.md", "title": "Extensions.BiologicalRhythmLaws", "concepts": [{"name": "Extensions.BiologicalRhythmLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalRhythmLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalRhythmLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalRhythmLaws", "type": "definition"}], "tags": ["biology", "biophysics", "chronobiology", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalRhythmLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalSensingLaws.md", "title": "Extensions.BiologicalSensingLaws", "concepts": [{"name": "Extensions.BiologicalSensingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalSensingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalSensingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalSensingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalSensingLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalSystemComplexity.md", "title": "Extensions.BiologicalSystemComplexity", "concepts": [{"name": "Extensions.BiologicalSystemComplexity", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalSystemComplexity", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalSystemComplexity", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalSystemComplexity", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalSystemComplexity. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiologicalTransportLaws.md", "title": "Extensions.BiologicalTransportLaws", "concepts": [{"name": "Extensions.BiologicalTransportLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiologicalTransportLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiologicalTransportLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiologicalTransportLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiologicalTransportLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiomolecularFoldingLaws.md", "title": "Extensions.BiomolecularFoldingLaws", "concepts": [{"name": "Extensions.BiomolecularFoldingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiomolecularFoldingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiomolecularFoldingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiomolecularFoldingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "molecular-biology", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiomolecularFoldingLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BiophysicalStructuralLaws.md", "title": "Extensions.BiophysicalStructuralLaws", "concepts": [{"name": "Extensions.BiophysicalStructuralLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.BiophysicalStructuralLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.BiophysicalStructuralLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.BiophysicalStructuralLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: BiophysicalStructuralLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_BlitterPolymorphism.md", "title": "Extensions.BlitterPolymorphism", "concepts": [{"name": "Extensions.BlitterPolymorphism", "description": "imports Extensions_ManifoldBlit; domain: Semantics", "type": "spec"}, {"name": "Extensions_ManifoldBlit", "description": "dependency of Extensions.BlitterPolymorphism", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Extensions_ManifoldBlit"], "summary": "Biological/physical dynamics extension module: BlitterPolymorphism. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CancerMetabolicDynamics.md", "title": "Extensions.CancerMetabolicDynamics", "concepts": [{"name": "Extensions.CancerMetabolicDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CancerMetabolicDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CancerMetabolicDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CancerMetabolicDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "oncology", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CancerMetabolicDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CardiacYieldDynamics.md", "title": "Extensions.CardiacYieldDynamics", "concepts": [{"name": "Extensions.CardiacYieldDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CardiacYieldDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CardiacYieldDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CardiacYieldDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "cardiology", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CardiacYieldDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CellularGrowthLaws.md", "title": "Extensions.CellularGrowthLaws", "concepts": [{"name": "Extensions.CellularGrowthLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CellularGrowthLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CellularGrowthLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CellularGrowthLaws", "type": "definition"}], "tags": ["biology", "biophysics", "cell-biology", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CellularGrowthLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CellularMotionLimits.md", "title": "Extensions.CellularMotionLimits", "concepts": [{"name": "Extensions.CellularMotionLimits", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CellularMotionLimits", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CellularMotionLimits", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CellularMotionLimits", "type": "definition"}], "tags": ["biology", "biophysics", "cell-biology", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CellularMotionLimits. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CellularSignalingDynamics.md", "title": "Extensions.CellularSignalingDynamics", "concepts": [{"name": "Extensions.CellularSignalingDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CellularSignalingDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CellularSignalingDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CellularSignalingDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "cell-biology", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CellularSignalingDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CognitiveAcousticDynamics.md", "title": "Extensions.CognitiveAcousticDynamics", "concepts": [{"name": "Extensions.CognitiveAcousticDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CognitiveAcousticDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CognitiveAcousticDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CognitiveAcousticDynamics", "type": "definition"}], "tags": ["acoustics", "biology", "biophysics", "cognitive-science", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CognitiveAcousticDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CognitiveEfficiencyLaws.md", "title": "Extensions.CognitiveEfficiencyLaws", "concepts": [{"name": "Extensions.CognitiveEfficiencyLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CognitiveEfficiencyLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CognitiveEfficiencyLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CognitiveEfficiencyLaws", "type": "definition"}], "tags": ["biology", "biophysics", "cognitive-science", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CognitiveEfficiencyLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CognitiveLearningDynamics.md", "title": "Extensions.CognitiveLearningDynamics", "concepts": [{"name": "Extensions.CognitiveLearningDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CognitiveLearningDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CognitiveLearningDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CognitiveLearningDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "cognitive-science", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CognitiveLearningDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CollectiveBiophysics.md", "title": "Extensions.CollectiveBiophysics", "concepts": [{"name": "Extensions.CollectiveBiophysics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CollectiveBiophysics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CollectiveBiophysics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CollectiveBiophysics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CollectiveBiophysics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_ConstrainedEnergyDynamics.md", "title": "Extensions.ConstrainedEnergyDynamics", "concepts": [{"name": "Extensions.ConstrainedEnergyDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.ConstrainedEnergyDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.ConstrainedEnergyDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.ConstrainedEnergyDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: ConstrainedEnergyDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_ConstructalMuscleDynamics.md", "title": "Extensions.ConstructalMuscleDynamics", "concepts": [{"name": "Extensions.ConstructalMuscleDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.ConstructalMuscleDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.ConstructalMuscleDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.ConstructalMuscleDynamics", "type": "definition"}], "tags": ["biology", "biomechanics", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: ConstructalMuscleDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_CorticalScalingDynamics.md", "title": "Extensions.CorticalScalingDynamics", "concepts": [{"name": "Extensions.CorticalScalingDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.CorticalScalingDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.CorticalScalingDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.CorticalScalingDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: CorticalScalingDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_DevelopmentalScalingLaws.md", "title": "Extensions.DevelopmentalScalingLaws", "concepts": [{"name": "Extensions.DevelopmentalScalingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.DevelopmentalScalingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.DevelopmentalScalingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.DevelopmentalScalingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: DevelopmentalScalingLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EcologicalBehaviors.md", "title": "Extensions.EcologicalBehaviors", "concepts": [{"name": "Extensions.EcologicalBehaviors", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EcologicalBehaviors", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EcologicalBehaviors", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EcologicalBehaviors", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EcologicalBehaviors. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EcologicalInformationDynamics.md", "title": "Extensions.EcologicalInformationDynamics", "concepts": [{"name": "Extensions.EcologicalInformationDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EcologicalInformationDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EcologicalInformationDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EcologicalInformationDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EcologicalInformationDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EcologicalNetworkDynamics.md", "title": "Extensions.EcologicalNetworkDynamics", "concepts": [{"name": "Extensions.EcologicalNetworkDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EcologicalNetworkDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EcologicalNetworkDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EcologicalNetworkDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EcologicalNetworkDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EcologicalSpecializationLaws.md", "title": "Extensions.EcologicalSpecializationLaws", "concepts": [{"name": "Extensions.EcologicalSpecializationLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EcologicalSpecializationLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EcologicalSpecializationLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EcologicalSpecializationLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EcologicalSpecializationLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EcologyMechanicalLaws.md", "title": "Extensions.EcologyMechanicalLaws", "concepts": [{"name": "Extensions.EcologyMechanicalLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EcologyMechanicalLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EcologyMechanicalLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EcologyMechanicalLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EcologyMechanicalLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EpidemiologicalDynamics.md", "title": "Extensions.EpidemiologicalDynamics", "concepts": [{"name": "Extensions.EpidemiologicalDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EpidemiologicalDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EpidemiologicalDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EpidemiologicalDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "epidemiology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EpidemiologicalDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EpidemiologicalTrophicDynamics.md", "title": "Extensions.EpidemiologicalTrophicDynamics", "concepts": [{"name": "Extensions.EpidemiologicalTrophicDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EpidemiologicalTrophicDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EpidemiologicalTrophicDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EpidemiologicalTrophicDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "epidemiology", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EpidemiologicalTrophicDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EvolutionaryLandscapeDynamics.md", "title": "Extensions.EvolutionaryLandscapeDynamics", "concepts": [{"name": "Extensions.EvolutionaryLandscapeDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EvolutionaryLandscapeDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EvolutionaryLandscapeDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EvolutionaryLandscapeDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "evolution", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EvolutionaryLandscapeDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_EvolutionaryNetworkDynamics.md", "title": "Extensions.EvolutionaryNetworkDynamics", "concepts": [{"name": "Extensions.EvolutionaryNetworkDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.EvolutionaryNetworkDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.EvolutionaryNetworkDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.EvolutionaryNetworkDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "evolution", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: EvolutionaryNetworkDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_FisherGeometricAdaptationLaws.md", "title": "Extensions.FisherGeometricAdaptationLaws", "concepts": [{"name": "Extensions.FisherGeometricAdaptationLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.FisherGeometricAdaptationLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.FisherGeometricAdaptationLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.FisherGeometricAdaptationLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: FisherGeometricAdaptationLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_FoundationalBioLaws.md", "title": "Extensions.FoundationalBioLaws", "concepts": [{"name": "Extensions.FoundationalBioLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.FoundationalBioLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.FoundationalBioLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.FoundationalBioLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: FoundationalBioLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_FractalVascularLaws.md", "title": "Extensions.FractalVascularLaws", "concepts": [{"name": "Extensions.FractalVascularLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.FractalVascularLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.FractalVascularLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.FractalVascularLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: FractalVascularLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_GenomicEvolutionLaws.md", "title": "Extensions.GenomicEvolutionLaws", "concepts": [{"name": "Extensions.GenomicEvolutionLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.GenomicEvolutionLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.GenomicEvolutionLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.GenomicEvolutionLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "evolution", "extensions", "genomics", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: GenomicEvolutionLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_GenomicInformationLaws.md", "title": "Extensions.GenomicInformationLaws", "concepts": [{"name": "Extensions.GenomicInformationLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.GenomicInformationLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.GenomicInformationLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.GenomicInformationLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "genomics", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: GenomicInformationLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_GenomicScalingLaws.md", "title": "Extensions.GenomicScalingLaws", "concepts": [{"name": "Extensions.GenomicScalingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.GenomicScalingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.GenomicScalingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.GenomicScalingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "genomics", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: GenomicScalingLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_GenomicStoichiometricDynamics.md", "title": "Extensions.GenomicStoichiometricDynamics", "concepts": [{"name": "Extensions.GenomicStoichiometricDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.GenomicStoichiometricDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.GenomicStoichiometricDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.GenomicStoichiometricDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "genomics", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: GenomicStoichiometricDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_HarmonicKinkPlasmaManifold.md", "title": "Extensions.HarmonicKinkPlasmaManifold", "concepts": [{"name": "Extensions.HarmonicKinkPlasmaManifold", "description": "imports FixedPoint, FAMM; domain: Semantics", "type": "spec"}, {"name": "FixedPoint", "description": "dependency of Extensions.HarmonicKinkPlasmaManifold", "type": "definition"}, {"name": "FAMM", "description": "dependency of Extensions.HarmonicKinkPlasmaManifold", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "plasma-physics", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "FAMM"], "summary": "Biological/physical dynamics extension module: HarmonicKinkPlasmaManifold. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_HyperbolicStateSurface.md", "title": "Extensions.HyperbolicStateSurface", "concepts": [{"name": "Extensions.HyperbolicStateSurface", "description": "domain: Semantics", "type": "spec"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Biological/physical dynamics extension module: HyperbolicStateSurface. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_LifeHistoryInvariants.md", "title": "Extensions.LifeHistoryInvariants", "concepts": [{"name": "Extensions.LifeHistoryInvariants", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.LifeHistoryInvariants", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.LifeHistoryInvariants", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.LifeHistoryInvariants", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: LifeHistoryInvariants. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_LifeHistoryOptimizationLaws.md", "title": "Extensions.LifeHistoryOptimizationLaws", "concepts": [{"name": "Extensions.LifeHistoryOptimizationLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.LifeHistoryOptimizationLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.LifeHistoryOptimizationLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.LifeHistoryOptimizationLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: LifeHistoryOptimizationLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_LifeHistoryTradeoffLaws.md", "title": "Extensions.LifeHistoryTradeoffLaws", "concepts": [{"name": "Extensions.LifeHistoryTradeoffLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.LifeHistoryTradeoffLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.LifeHistoryTradeoffLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.LifeHistoryTradeoffLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: LifeHistoryTradeoffLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_LocomotionMuscleDynamics.md", "title": "Extensions.LocomotionMuscleDynamics", "concepts": [{"name": "Extensions.LocomotionMuscleDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.LocomotionMuscleDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.LocomotionMuscleDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.LocomotionMuscleDynamics", "type": "definition"}], "tags": ["biology", "biomechanics", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: LocomotionMuscleDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MalthusianHayflickDynamics.md", "title": "Extensions.MalthusianHayflickDynamics", "concepts": [{"name": "Extensions.MalthusianHayflickDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MalthusianHayflickDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MalthusianHayflickDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MalthusianHayflickDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MalthusianHayflickDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_ManifoldBlit.md", "title": "Extensions.ManifoldBlit", "concepts": [{"name": "Extensions.ManifoldBlit", "description": "imports Spectrum; imported by 1 modules; domain: Semantics", "type": "spec"}, {"name": "Spectrum", "description": "dependency of Extensions.ManifoldBlit", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Spectrum", "Extensions_BlitterPolymorphism"], "summary": "Biological/physical dynamics extension module: ManifoldBlit. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MarineMigrationDynamics.md", "title": "Extensions.MarineMigrationDynamics", "concepts": [{"name": "Extensions.MarineMigrationDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MarineMigrationDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MarineMigrationDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MarineMigrationDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "marine-biology", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MarineMigrationDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MarinePlanktonDynamics.md", "title": "Extensions.MarinePlanktonDynamics", "concepts": [{"name": "Extensions.MarinePlanktonDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MarinePlanktonDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MarinePlanktonDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MarinePlanktonDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "marine-biology", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MarinePlanktonDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MasterEquation.md", "title": "Extensions.MasterEquation", "concepts": [{"name": "Extensions.MasterEquation", "description": "imports FixedPoint; domain: Semantics", "type": "spec"}, {"name": "FixedPoint", "description": "dependency of Extensions.MasterEquation", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Biological/physical dynamics extension module: MasterEquation. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MicrobialBiomassDynamics.md", "title": "Extensions.MicrobialBiomassDynamics", "concepts": [{"name": "Extensions.MicrobialBiomassDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MicrobialBiomassDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MicrobialBiomassDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MicrobialBiomassDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MicrobialBiomassDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MolecularBindingThermodynamics.md", "title": "Extensions.MolecularBindingThermodynamics", "concepts": [{"name": "Extensions.MolecularBindingThermodynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MolecularBindingThermodynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MolecularBindingThermodynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MolecularBindingThermodynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "molecular-biology", "semantics", "thermodynamics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MolecularBindingThermodynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MolecularCooperation.md", "title": "Extensions.MolecularCooperation", "concepts": [{"name": "Extensions.MolecularCooperation", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MolecularCooperation", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MolecularCooperation", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MolecularCooperation", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "molecular-biology", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MolecularCooperation. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MorphoKineticLaws.md", "title": "Extensions.MorphoKineticLaws", "concepts": [{"name": "Extensions.MorphoKineticLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MorphoKineticLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MorphoKineticLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MorphoKineticLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "morphogenesis", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MorphoKineticLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MorphogeneticLaws.md", "title": "Extensions.MorphogeneticLaws", "concepts": [{"name": "Extensions.MorphogeneticLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MorphogeneticLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MorphogeneticLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MorphogeneticLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "genomics", "manifold", "module", "morphogenesis", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MorphogeneticLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_MorphologicalDynamics.md", "title": "Extensions.MorphologicalDynamics", "concepts": [{"name": "Extensions.MorphologicalDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.MorphologicalDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.MorphologicalDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.MorphologicalDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "morphogenesis", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: MorphologicalDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NKCoupling.md", "title": "Extensions.NKCoupling", "concepts": [{"name": "Extensions.NKCoupling", "description": "domain: Semantics", "type": "spec"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Biological/physical dynamics extension module: NKCoupling. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NeuralFieldDynamics.md", "title": "Extensions.NeuralFieldDynamics", "concepts": [{"name": "Extensions.NeuralFieldDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NeuralFieldDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NeuralFieldDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NeuralFieldDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "neuroscience", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NeuralFieldDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NeuralTrophicSwimmingDynamics.md", "title": "Extensions.NeuralTrophicSwimmingDynamics", "concepts": [{"name": "Extensions.NeuralTrophicSwimmingDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NeuralTrophicSwimmingDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NeuralTrophicSwimmingDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NeuralTrophicSwimmingDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "neuroscience", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NeuralTrophicSwimmingDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NeuroEmergentLaws.md", "title": "Extensions.NeuroEmergentLaws", "concepts": [{"name": "Extensions.NeuroEmergentLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NeuroEmergentLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NeuroEmergentLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NeuroEmergentLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "neuroscience", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NeuroEmergentLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NeuroInformationDynamics.md", "title": "Extensions.NeuroInformationDynamics", "concepts": [{"name": "Extensions.NeuroInformationDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NeuroInformationDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NeuroInformationDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NeuroInformationDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "neuroscience", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NeuroInformationDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NicheAgingDynamics.md", "title": "Extensions.NicheAgingDynamics", "concepts": [{"name": "Extensions.NicheAgingDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NicheAgingDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NicheAgingDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NicheAgingDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecological-niche", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NicheAgingDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NicheIonDynamics.md", "title": "Extensions.NicheIonDynamics", "concepts": [{"name": "Extensions.NicheIonDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NicheIonDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NicheIonDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NicheIonDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecological-niche", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NicheIonDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NicheSpecializationDynamics.md", "title": "Extensions.NicheSpecializationDynamics", "concepts": [{"name": "Extensions.NicheSpecializationDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NicheSpecializationDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NicheSpecializationDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NicheSpecializationDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "ecological-niche", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NicheSpecializationDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_NutrientQuotaDynamics.md", "title": "Extensions.NutrientQuotaDynamics", "concepts": [{"name": "Extensions.NutrientQuotaDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.NutrientQuotaDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.NutrientQuotaDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.NutrientQuotaDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "nutrient-cycling", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: NutrientQuotaDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_OceanicBiomassScalingLaws.md", "title": "Extensions.OceanicBiomassScalingLaws", "concepts": [{"name": "Extensions.OceanicBiomassScalingLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.OceanicBiomassScalingLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.OceanicBiomassScalingLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.OceanicBiomassScalingLaws", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "marine-biology", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: OceanicBiomassScalingLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_PhotosynthesisHydraulicDynamics.md", "title": "Extensions.PhotosynthesisHydraulicDynamics", "concepts": [{"name": "Extensions.PhotosynthesisHydraulicDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.PhotosynthesisHydraulicDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.PhotosynthesisHydraulicDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.PhotosynthesisHydraulicDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: PhotosynthesisHydraulicDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_PhysiologicalInvariants.md", "title": "Extensions.PhysiologicalInvariants", "concepts": [{"name": "Extensions.PhysiologicalInvariants", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.PhysiologicalInvariants", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.PhysiologicalInvariants", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.PhysiologicalInvariants", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: PhysiologicalInvariants. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_PlanetaryNeuroTopology.md", "title": "Extensions.PlanetaryNeuroTopology", "concepts": [{"name": "Extensions.PlanetaryNeuroTopology", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "architecture"}, {"name": "GeneticCode", "description": "dependency of Extensions.PlanetaryNeuroTopology", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.PlanetaryNeuroTopology", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.PlanetaryNeuroTopology", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "neuroscience", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: PlanetaryNeuroTopology. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_PlantHydraulicDynamics.md", "title": "Extensions.PlantHydraulicDynamics", "concepts": [{"name": "Extensions.PlantHydraulicDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.PlantHydraulicDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.PlantHydraulicDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.PlantHydraulicDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "botany", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: PlantHydraulicDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_PlantPhyllotaxisLaws.md", "title": "Extensions.PlantPhyllotaxisLaws", "concepts": [{"name": "Extensions.PlantPhyllotaxisLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.PlantPhyllotaxisLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.PlantPhyllotaxisLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.PlantPhyllotaxisLaws", "type": "definition"}], "tags": ["biology", "biophysics", "botany", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: PlantPhyllotaxisLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_PopulationChaosDynamics.md", "title": "Extensions.PopulationChaosDynamics", "concepts": [{"name": "Extensions.PopulationChaosDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.PopulationChaosDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.PopulationChaosDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.PopulationChaosDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "population-dynamics", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: PopulationChaosDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_QuantumSyntheticBio.md", "title": "Extensions.QuantumSyntheticBio", "concepts": [{"name": "Extensions.QuantumSyntheticBio", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.QuantumSyntheticBio", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.QuantumSyntheticBio", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.QuantumSyntheticBio", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "quantum", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: QuantumSyntheticBio. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_ReliabilityStochasticDynamics.md", "title": "Extensions.ReliabilityStochasticDynamics", "concepts": [{"name": "Extensions.ReliabilityStochasticDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.ReliabilityStochasticDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.ReliabilityStochasticDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.ReliabilityStochasticDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "reliability-engineering", "semantics", "stochastic"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: ReliabilityStochasticDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_ResilienceTippingDynamics.md", "title": "Extensions.ResilienceTippingDynamics", "concepts": [{"name": "Extensions.ResilienceTippingDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.ResilienceTippingDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.ResilienceTippingDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.ResilienceTippingDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "resilience", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: ResilienceTippingDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_RhythmicStructuralDynamics.md", "title": "Extensions.RhythmicStructuralDynamics", "concepts": [{"name": "Extensions.RhythmicStructuralDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.RhythmicStructuralDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.RhythmicStructuralDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.RhythmicStructuralDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "chronobiology", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: RhythmicStructuralDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_RootNutrientDynamics.md", "title": "Extensions.RootNutrientDynamics", "concepts": [{"name": "Extensions.RootNutrientDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.RootNutrientDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.RootNutrientDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.RootNutrientDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "nutrient-cycling", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: RootNutrientDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SleepChronobiologyDynamics.md", "title": "Extensions.SleepChronobiologyDynamics", "concepts": [{"name": "Extensions.SleepChronobiologyDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.SleepChronobiologyDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.SleepChronobiologyDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.SleepChronobiologyDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "chronobiology", "dynamics", "extensions", "manifold", "module", "semantics", "sleep-science"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: SleepChronobiologyDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SocialCognitiveDynamics.md", "title": "Extensions.SocialCognitiveDynamics", "concepts": [{"name": "Extensions.SocialCognitiveDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.SocialCognitiveDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.SocialCognitiveDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.SocialCognitiveDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "cognitive-science", "dynamics", "extensions", "manifold", "module", "semantics", "social-science"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: SocialCognitiveDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SocialMotionVisionDynamics.md", "title": "Extensions.SocialMotionVisionDynamics", "concepts": [{"name": "Extensions.SocialMotionVisionDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.SocialMotionVisionDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.SocialMotionVisionDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.SocialMotionVisionDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "social-science", "vision-science"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: SocialMotionVisionDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SoftTissuePressureDynamics.md", "title": "Extensions.SoftTissuePressureDynamics", "concepts": [{"name": "Extensions.SoftTissuePressureDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.SoftTissuePressureDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.SoftTissuePressureDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.SoftTissuePressureDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "tissue-mechanics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: SoftTissuePressureDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SoilFungalDynamics.md", "title": "Extensions.SoilFungalDynamics", "concepts": [{"name": "Extensions.SoilFungalDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.SoilFungalDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.SoilFungalDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.SoilFungalDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "mycology", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: SoilFungalDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SolitonEngine.md", "title": "Extensions.SolitonEngine", "concepts": [{"name": "Extensions.SolitonEngine", "description": "domain: Semantics", "type": "spec"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "soliton"], "layer": "Documentation", "dependencies": [], "summary": "Biological/physical dynamics extension module: SolitonEngine. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_StoichiometricMetabolicDynamics.md", "title": "Extensions.StoichiometricMetabolicDynamics", "concepts": [{"name": "Extensions.StoichiometricMetabolicDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.StoichiometricMetabolicDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.StoichiometricMetabolicDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.StoichiometricMetabolicDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "oncology", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: StoichiometricMetabolicDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_SystemicBioDynamics.md", "title": "Extensions.SystemicBioDynamics", "concepts": [{"name": "Extensions.SystemicBioDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.SystemicBioDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.SystemicBioDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.SystemicBioDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: SystemicBioDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_VisionColorDynamics.md", "title": "Extensions.VisionColorDynamics", "concepts": [{"name": "Extensions.VisionColorDynamics", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.VisionColorDynamics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.VisionColorDynamics", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.VisionColorDynamics", "type": "definition"}], "tags": ["biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics", "vision-science"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: VisionColorDynamics. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Extensions_VocalProductionLaws.md", "title": "Extensions.VocalProductionLaws", "concepts": [{"name": "Extensions.VocalProductionLaws", "description": "imports GeneticCode, FixedPoint, Spectrum; domain: Semantics", "type": "spec"}, {"name": "GeneticCode", "description": "dependency of Extensions.VocalProductionLaws", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Extensions.VocalProductionLaws", "type": "definition"}, {"name": "Spectrum", "description": "dependency of Extensions.VocalProductionLaws", "type": "definition"}], "tags": ["acoustics", "biology", "biophysics", "dynamics", "extensions", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeneticCode", "FixedPoint", "Spectrum"], "summary": "Biological/physical dynamics extension module: VocalProductionLaws. Defines domain-specific equations and invariants for the Semantics manifold."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ExternalConnectors.md", "title": "ExternalConnectors", "concepts": [{"name": "ExternalConnectors", "description": "imports FixedPoint; domain: Semantics", "type": "protocol"}, {"name": "FixedPoint", "description": "dependency of ExternalConnectors", "type": "definition"}], "tags": ["connectors", "external", "integration", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (ExternalConnectors) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ExtremeParameterTest.md", "title": "ExtremeParameterTest", "concepts": [{"name": "ExtremeParameterTest", "description": "imported by 2 modules; domain: Semantics", "type": "gate"}], "tags": ["extreme", "manifold", "module", "parameters", "semantics", "testing"], "layer": "Documentation", "dependencies": ["Testing_BaselineTest", "Testing_ZKBenchmarkCapsule"], "summary": "Module (ExtremeParameterTest) in the Semantics domain. imported by 2 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FAMM.md", "title": "FAMM", "concepts": [{"name": "FAMM", "description": "imports FixedPoint; imported by 1 modules; domain: Semantics", "type": "architecture"}, {"name": "FixedPoint", "description": "dependency of FAMM", "type": "definition"}], "tags": ["capability", "isolation", "manifold", "memory", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Extensions_HarmonicKinkPlasmaManifold"], "summary": "Module (FAMM) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FNWH_DimensionlessFluxClosure.md", "title": "FNWH.DimensionlessFluxClosure", "concepts": [{"name": "FNWH.DimensionlessFluxClosure", "description": "domain: Semantics", "type": "spec"}], "tags": ["dimensionless", "flux", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Field-theoretic module: DimensionlessFluxClosure. Implements dimensionless flux closure and related physics analogies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FNWH_GinzburgLandauAnalogy.md", "title": "FNWH.GinzburgLandauAnalogy", "concepts": [{"name": "FNWH.GinzburgLandauAnalogy", "description": "domain: Semantics", "type": "spec"}], "tags": ["dimensionless", "flux", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Field-theoretic module: GinzburgLandauAnalogy. Implements dimensionless flux closure and related physics analogies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FaultTolerance.md", "title": "FaultTolerance", "concepts": [{"name": "FaultTolerance", "description": "imports GossipFlipMessage, ConflictResolution, TileFlipConsensus; domain: Semantics", "type": "protocol"}, {"name": "GossipFlipMessage", "description": "dependency of FaultTolerance", "type": "definition"}, {"name": "ConflictResolution", "description": "dependency of FaultTolerance", "type": "definition"}, {"name": "TileFlipConsensus", "description": "dependency of FaultTolerance", "type": "definition"}], "tags": ["consensus", "fault-tolerance", "gossip", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GossipFlipMessage", "ConflictResolution", "TileFlipConsensus"], "summary": "Module (FaultTolerance) in the Semantics domain. Imports 3 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FibonacciEncoding.md", "title": "FibonacciEncoding", "concepts": [{"name": "FibonacciEncoding", "description": "imports FixedPoint; imported by 1 modules; domain: Semantics", "type": "primitive"}, {"name": "FixedPoint", "description": "dependency of FibonacciEncoding", "type": "definition"}], "tags": ["encoding", "fibonacci", "manifold", "module", "semantics", "topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Surface"], "summary": "Module (FibonacciEncoding) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FieldDamping.md", "title": "FieldDamping", "concepts": [{"name": "FieldDamping", "description": "imports FixedPoint, RFPFieldSolver; domain: Semantics", "type": "pattern"}, {"name": "FixedPoint", "description": "dependency of FieldDamping", "type": "definition"}, {"name": "RFPFieldSolver", "description": "dependency of FieldDamping", "type": "definition"}], "tags": ["damping", "field", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "RFPFieldSolver"], "summary": "Module (FieldDamping) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FieldEquationIntegration.md", "title": "FieldEquationIntegration", "concepts": [{"name": "FieldEquationIntegration", "description": "imports RealityContractMassNumber; imported by 1 modules; domain: Semantics", "type": "algorithm"}, {"name": "RealityContractMassNumber", "description": "dependency of FieldEquationIntegration", "type": "definition"}], "tags": ["field-equations", "integration", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": ["RealityContractMassNumber", "ForestAutodocRegistry"], "summary": "Module (FieldEquationIntegration) in the Semantics domain. Imports 1 module(s), imported by 1 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FieldSolver.md", "title": "FieldSolver", "concepts": [{"name": "FieldSolver", "description": "imports Atoms, FixedPoint, Bind; domain: Semantics", "type": "algorithm"}, {"name": "Atoms", "description": "dependency of FieldSolver", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of FieldSolver", "type": "definition"}, {"name": "Bind", "description": "dependency of FieldSolver", "type": "definition"}], "tags": ["field", "manifold", "module", "physics", "semantics", "solver"], "layer": "Documentation", "dependencies": ["Atoms", "FixedPoint", "Bind"], "summary": "Module (FieldSolver) in the Semantics domain. Imports 3 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FiveDTorusTopology.md", "title": "FiveDTorusTopology", "concepts": [{"name": "FiveDTorusTopology", "description": "imports FixedPoint; imported by 2 modules; domain: Semantics", "type": "architecture"}, {"name": "FixedPoint", "description": "dependency of FiveDTorusTopology", "type": "definition"}], "tags": ["5d", "manifold", "module", "semantics", "topology", "torus"], "layer": "Documentation", "dependencies": ["FixedPoint", "NetworkedSelfSolvingSpace", "HybridTSMPISTTorus"], "summary": "Module (FiveDTorusTopology) in the Semantics domain. Imports 1 module(s), imported by 2 module(s)."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FixedPoint.md", "title": "FixedPoint", "concepts": [{"name": "FixedPoint", "description": "imported by 348 modules; domain: Semantics", "type": "primitive"}], "tags": ["Q16_16", "arithmetic", "fixed-point", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Bind", "Transition", "MasterEquation", "SpectralField", "UniversalField", "LocalDerivative", "InteratomicPotential", "JouleEnergy", "ResonanceGradient", "FieldDamping", "FieldSolver", "EnvironmentMechanics", "SurfaceCore", "ShellModel", "RFPFieldSolver", "RaycastField", "ScalarEventProjection", "AtomicResolution", "Atoms", "CosmicStructure", "MISignal", "Navigator", "Spectrum", "ThermodynamicSort", "VideoPhysics", "ElectrostaticsMetaprobe", "NICProbe", "NIICore", "USBProbe", "GeometricTopology", "NonEuclideanGeometry", "NNonEuclideanGeometry", "Curvature", "ManifoldNetworking", "TopologyDlessScalar", "TopologyFractalEncoding", "TopologyGoldenSpiral", "TopologyPhinary", "BraidField", "BraidStrand", "BraidCross", "FiveDTorusTopology", "HypercubeTopology", "TriangleManifold", "GoldenAngleEncoding", "FibonacciEncoding", "MengerSpongeFractalAddressing", "TopologicalAwareness", "TopologicalPersistence", "TopologyOptimization", "VoxelEncoding", "Basic", "MetricCore", "FixedPointBridge", "Quantization", "QuantizationMetaprobe", "VecState", "CompressionMechanics", "CompressionMechanicsBridge", "CompressionControl", "CompressionEvidence", "CompressionLossComparison", "HutterMaximumCompression", "HutterPrizeISA", "HutterPrizeRGFlow", "StreamCompression", "CrossModalCompression", "HumanNeuralCompression", "LandauerCompression", "EntropyMeasures", "EntropyPhaseEngine", "DeltaGCLCompression", "QuantumAwareLean", "QuantumManifoldGeometry", "RotationQUBO", "SolitonTensor", "ElectronOrbitalConstraint", "MOFCO2Reduction", "GeneticGroundUp", "GenomicCompression", "OpenWorm", "BrainBoxDescriptor", "Evolution", "HolographicProjection", "HormoneDeriv", "MorphicNeuralNetwork", "Substrate", "MorphicDSP", "MorphicDSPMetaprobe", "MorphicScalar", "MorphicTopologyMetaprobe", "DSPTranslation", "DspErasureCoding", "LeanGPTTSMLayer", "NetworkRAM", "NetworkedSelfSolvingSpace", "SwarmCodeGeneration", "SwarmCompetition", "SwarmDesignReview", "SwarmMoERewiring", "SwarmQueryAPI", "ENEMemoryAtlasMetaprobe", "BitcoinMetaprobe", "BitcoinMetaprobeEval", "MinimalBitcoinL3", "QFactor", "QuaternionScalar", "MNLOGQuaternionBridge", "SLUQQuaternionIntegration", "SLUQTriage", "MassNumberAdapter", "MassNumberLinter", "SabotagePrevention", "Lean4ImprovementProofs", "BindEngine", "ExternalConnectors", "PistBridge", "AgenticCore", "AgenticOrchestrationField", "AgenticTaskAssignment", "AgenticTheorems", "SubagentOrchestrator", "AVMRFrameworkMetaprobe", "AVMR", "BHOCS", "PISTMachine", "TorsionalPIST", "FAMM", "S3CManifoldGeometryMetaprobe", "S3CManifoldMetaprobe", "S3CUnifiedMetaprobe", "SSMS", "SSMS_nD", "OrthogonalAmmr", "HachimojiEquationMetaprobe", "HachimojiPipeline", "DomainState", "CanonAdapters", "CanonSerialization", "CanonicalInterval", "MOIMMetaprobe", "GCLFieldEquationsMetaprobe", "Genus3TopologyMetaprobe", "Layer3Metaprobe", "InfoThermodynamicsMetaprobe", "CasimirMetaprobe", "MS3CNestedReductionGearMetaprobe", "TrophicCascadeMetaprobe", "PistSimulation", "HybridTSMPISTTorus", "Hyperfluid", "HyperFlow", "Adaptation", "Autobalance", "AffineMappingLTSF", "AngrySphinx", "MechanicalLogic", "CellSnowballConstraint", "ChatLogConversion", "CognitiveLoad", "Containment", "CrossDimensionalFilter", "DecagonZetaCrossing", "Decoder", "DefectMechanics", "DynamicCanal", "EfficiencyAnalysis", "FlagSort", "FuzzyAssociation", "ComputationProfile", "HotPathColdPath", "ManyWorldsAddress", "MinimalLayer3Eval", "OEPI", "OmnidirectionalInterface", "OmniNetwork", "SemanticRGFlow", "SIMDBranchPrediction", "SLUG3", "Tape", "TemporalSpatialRAM", "UnifiedSchema", "VirtualWarpMetric", "UnitConversion", "SIConstants", "ASICTopology", "Search", "Canon", "MereotopologicalSheafHypergraph", "YangMillsLattice", "YangMillsCompression", "YangMillsPerformance", "YangMillsLatticeSizing", "YangMillsCompressionBounds", "Layer3TransmissionModel", "SigmaGate", "CoulombComplexity", "NUVMATH", "WitnessGrammar", "S3CResonance", "AVM", "SyntheticGeneticCoding", "GeometricCompressionWorkspace", "HermesAgentIntegration", "Extensions_AdvancedBioDynamics", "Extensions_AnimalSignalingLaws", "Extensions_AnimalSocialAerodynamics", "Extensions_AuditoryMaskingDynamics", "Extensions_AuditoryMechanicsLaws", "Extensions_AuditoryPerceptionLaws", "Extensions_BettiSwoosh", "Extensions_BioComplexSystems", "Extensions_BioDeepDive", "Extensions_BioElectricalImpedanceLaws", "Extensions_BioElectroThermodynamics", "Extensions_BioPhotonicsDynamics", "Extensions_BioThermoTopology", "Extensions_BiologicalComputingLaws", "Extensions_BiologicalControlDynamics", "Extensions_BiologicalExergyDynamics", "Extensions_BiologicalExtremalLaws", "Extensions_BiologicalInformationLaws", "Extensions_BiologicalIntegrityLaws", "Extensions_BiologicalRegulationDynamics", "Extensions_BiologicalRhythmLaws", "Extensions_BiologicalSensingLaws", "Extensions_BiologicalSystemComplexity", "Extensions_BiologicalTransportLaws", "Extensions_BiomolecularFoldingLaws", "Extensions_BiophysicalStructuralLaws", "Extensions_CancerMetabolicDynamics", "Extensions_CardiacYieldDynamics", "Extensions_CellularGrowthLaws", "Extensions_CellularMotionLimits", "Extensions_CellularSignalingDynamics", "Extensions_CognitiveAcousticDynamics", "Extensions_CognitiveEfficiencyLaws", "Extensions_CognitiveLearningDynamics", "Extensions_CollectiveBiophysics", "Extensions_ConstrainedEnergyDynamics", "Extensions_ConstructalMuscleDynamics", "Extensions_CorticalScalingDynamics", "Extensions_DevelopmentalScalingLaws", "Extensions_EcologicalBehaviors", "Extensions_EcologicalInformationDynamics", "Extensions_EcologicalNetworkDynamics", "Extensions_EcologicalSpecializationLaws", "Extensions_EcologyMechanicalLaws", "Extensions_EpidemiologicalDynamics", "Extensions_EpidemiologicalTrophicDynamics", "Extensions_EvolutionaryLandscapeDynamics", "Extensions_EvolutionaryNetworkDynamics", "Extensions_FisherGeometricAdaptationLaws", "Extensions_FoundationalBioLaws", "Extensions_FractalVascularLaws", "Extensions_GenomicEvolutionLaws", "Extensions_GenomicInformationLaws", "Extensions_GenomicScalingLaws", "Extensions_GenomicStoichiometricDynamics", "Extensions_LifeHistoryInvariants", "Extensions_LifeHistoryOptimizationLaws", "Extensions_LifeHistoryTradeoffLaws", "Extensions_LocomotionMuscleDynamics", "Extensions_MalthusianHayflickDynamics", "Extensions_MarineMigrationDynamics", "Extensions_MarinePlanktonDynamics", "Extensions_MasterEquation", "Extensions_MicrobialBiomassDynamics", "Extensions_MolecularBindingThermodynamics", "Extensions_MolecularCooperation", "Extensions_MorphoKineticLaws", "Extensions_MorphogeneticLaws", "Extensions_MorphologicalDynamics", "Extensions_NeuralFieldDynamics", "Extensions_NeuralTrophicSwimmingDynamics", "Extensions_NeuroEmergentLaws", "Extensions_NeuroInformationDynamics", "Extensions_NicheAgingDynamics", "Extensions_NicheIonDynamics", "Extensions_NicheSpecializationDynamics", "Extensions_NutrientQuotaDynamics", "Extensions_OceanicBiomassScalingLaws", "Extensions_PhotosynthesisHydraulicDynamics", "Extensions_PhysiologicalInvariants", "Extensions_PlanetaryNeuroTopology", "Extensions_PlantHydraulicDynamics", "Extensions_PlantPhyllotaxisLaws", "Extensions_PopulationChaosDynamics", "Extensions_QuantumSyntheticBio", "Extensions_ReliabilityStochasticDynamics", "Extensions_ResilienceTippingDynamics", "Extensions_RhythmicStructuralDynamics", "Extensions_RootNutrientDynamics", "Extensions_SleepChronobiologyDynamics", "Extensions_SocialCognitiveDynamics", "Extensions_SocialMotionVisionDynamics", "Extensions_SoftTissuePressureDynamics", "Extensions_SoilFungalDynamics", "Extensions_StoichiometricMetabolicDynamics", "Extensions_SystemicBioDynamics", "Extensions_VisionColorDynamics", "Extensions_VocalProductionLaws", "Extensions_HarmonicKinkPlasmaManifold", "Physics_NBody", "Physics_QCLEnergy", "Physics_StringStarConstants", "Benchmarks_HadwigerNelson", "Hardware_TangNano9K", "Hardware_AdaptiveFabric", "Hardware_AgenticHardware", "Hardware_HardwareExtraction", "Hardware_LaserPathCell", "Geometry_Behavioral", "Geometry_BehavioralBind", "Geometry_Cascade", "Geometry_CascadeBind", "Geometry_CascadeDescent", "Geometry_ImplicitShellLattice", "GenomicCompression_Components", "GenomicCompression_Compression", "GenomicCompression_Field", "GenomicCompression_NonDriftProof", "GenomicCompression_Theorems", "GenomicCompression_Types", "NIICore_SemanticAnalysis", "NIICore_SurfaceDriver", "NIICore_TranslationEngine", "NIICore_Verification", "Orchestrate_TopologyProbe", "Functions_BracketedCalculus", "Functions_MathCoreMetaprobe", "Functions_MathQuery", "Biology_QuaternionGenomic", "Biology_RGFlowBioinformatics", "Testing_DeltaGCLBenchmark", "Testing_ExtremeParameterTest", "Testing_MOIMBenchmark", "Testing_StructuralAttestation", "Components_Bind", "Components_Core", "Components_Gradient", "Components_Pipeline", "Components_Quaternion", "Components_State", "TMMCP_Core", "TMMCP_Compression", "TMMCP_Routing", "TMMCP_Verification"], "summary": "Core foundational module (FixedPoint) with high import fanout (348 dependents). Provides fundamental primitives for the Semantics domain."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FixedPointBridge.md", "title": "FixedPointBridge", "concepts": [{"name": "FixedPointBridge", "description": "imports FixedPoint; domain: Semantics", "type": "bridge"}, {"name": "FixedPoint", "description": "dependency of FixedPointBridge", "type": "definition"}], "tags": ["Q16_16", "arithmetic", "bridge", "fixed-point", "manifold", "migration", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module (FixedPointBridge) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FlagSort.md", "title": "FlagSort", "concepts": [{"name": "FlagSort", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "algorithm"}, {"name": "FixedPoint", "description": "dependency of FlagSort", "type": "definition"}, {"name": "Bind", "description": "dependency of FlagSort", "type": "definition"}], "tags": ["algorithm", "manifold", "module", "semantics", "sorting"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (FlagSort) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ForestAutodocRegistry.md", "title": "ForestAutodocRegistry", "concepts": [{"name": "ForestAutodocRegistry", "description": "imports RealityContractMassNumber, FieldEquationIntegration; domain: Semantics", "type": "tool"}, {"name": "RealityContractMassNumber", "description": "dependency of ForestAutodocRegistry", "type": "definition"}, {"name": "FieldEquationIntegration", "description": "dependency of ForestAutodocRegistry", "type": "definition"}], "tags": ["autodoc", "documentation", "manifold", "module", "registry", "semantics"], "layer": "Documentation", "dependencies": ["RealityContractMassNumber", "FieldEquationIntegration"], "summary": "Module (ForestAutodocRegistry) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Forgejo.md", "title": "Forgejo", "concepts": [{"name": "Forgejo", "description": "imports Bind; domain: Semantics", "type": "tool"}, {"name": "Bind", "description": "dependency of Forgejo", "type": "definition"}], "tags": ["devops", "forgejo", "git", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module (Forgejo) in the Semantics domain. Imports 1 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_BracketedCalculus.md", "title": "Functions.BracketedCalculus", "concepts": [{"name": "Functions.BracketedCalculus", "description": "imports FixedPoint; imported by 2 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Functions.BracketedCalculus", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "SolitonTensor", "PBACSSignal"], "summary": "Mathematical function module: BracketedCalculus. Provides formal mathematical definitions and metaprobes for the Semantics framework."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_MathCoreMetaprobe.md", "title": "Functions.MathCoreMetaprobe", "concepts": [{"name": "Functions.MathCoreMetaprobe", "description": "imports FixedPoint; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Functions.MathCoreMetaprobe", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Mathematical function module: MathCoreMetaprobe. Provides formal mathematical definitions and metaprobes for the Semantics framework."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_MathDebate.md", "title": "Functions.MathDebate", "concepts": [{"name": "Functions.MathDebate", "description": "domain: Semantics", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Mathematical function module: MathDebate. Provides formal mathematical definitions and metaprobes for the Semantics framework."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_MathQuery.md", "title": "Functions.MathQuery", "concepts": [{"name": "Functions.MathQuery", "description": "imports FixedPoint; imported by 1 modules; domain: Semantics", "type": "definition"}, {"name": "FixedPoint", "description": "dependency of Functions.MathQuery", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "GenomicCompression"], "summary": "Mathematical function module: MathQuery. Provides formal mathematical definitions and metaprobes for the Semantics framework."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_WSM_WR_EGS_WC_Mathlib.md", "title": "Functions.WSM_WR_EGS_WC_Mathlib", "concepts": [{"name": "Functions.WSM_WR_EGS_WC_Mathlib", "description": "domain: Semantics", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Mathematical function module: WSM_WR_EGS_WC_Mathlib. Provides formal mathematical definitions and metaprobes for the Semantics framework."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_WSM_WR_EGS_WC_Mathlib_temp.md", "title": "Functions.WSM_WR_EGS_WC_Mathlib_temp", "concepts": [{"name": "Functions.WSM_WR_EGS_WC_Mathlib_temp", "description": "domain: Semantics", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Mathematical function module: WSM_WR_EGS_WC_Mathlib_temp. Provides formal mathematical definitions and metaprobes for the Semantics framework."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Functions_WavefunctionSuperpositionMetacomputation.md", "title": "Functions.WavefunctionSuperpositionMetacomputation", "concepts": [{"name": "Functions.WavefunctionSuperpositionMetacomputation", "description": "domain: Semantics", "type": "definition"}], "tags": ["formalization", "lean", "manifold", "mathematics", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Mathematical function module: WavefunctionSuperpositionMetacomputation. Provides formal mathematical definitions and metaprobes for the Semantics framework."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/FuzzyAssociation.md", "title": "FuzzyAssociation", "concepts": [{"name": "FuzzyAssociation", "description": "imports FixedPoint, Bind; domain: Semantics", "type": "pattern"}, {"name": "FixedPoint", "description": "dependency of FuzzyAssociation", "type": "definition"}, {"name": "Bind", "description": "dependency of FuzzyAssociation", "type": "definition"}], "tags": ["association", "fuzzy", "logic", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module (FuzzyAssociation) in the Semantics domain. Imports 2 module(s), Not imported by other modules."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GCLFieldEquationsMetaprobe.md", "title": "GCLFieldEquationsMetaprobe", "concepts": [{"name": "GCLFieldEquationsMetaprobe", "description": "Metaprobe module for testing and validation of the GCLFieldEquations subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module GCLFieldEquationsMetaprobe in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GCLTopologyRevision.md", "title": "GCLTopologyRevision", "concepts": [{"name": "GCLTopologyRevision", "description": "Topological definition for GCLTopologyRevision.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics", "topology"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GCLTopologyRevision in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GPUResourceManager.md", "title": "GPUResourceManager", "concepts": [{"name": "GPUResourceManager", "description": "Resource management for GPUResourceManager. Depends on: Bind.", "type": "architecture"}], "tags": ["architecture", "gpu", "manifold", "module", "semantics", "source"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module GPUResourceManager in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GPUVerificationMetaprobe.md", "title": "GPUVerificationMetaprobe", "concepts": [{"name": "GPUVerificationMetaprobe", "description": "Metaprobe module for testing and validation of the GPUVerification subsystem.", "type": "gate"}], "tags": ["gate", "gpu", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GPUVerificationMetaprobe in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GemmaIntegration.md", "title": "GemmaIntegration", "concepts": [{"name": "GemmaIntegration", "description": "Integration module connecting GemmaIntegration to external systems.", "type": "bridge"}], "tags": ["bridge", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GemmaIntegration in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GeneBytecodeJIT.md", "title": "GeneBytecodeJIT", "concepts": [{"name": "GeneBytecodeJIT", "description": "Code generation tool: GeneBytecodeJIT.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GeneBytecodeJIT in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenerateLUT.md", "title": "GenerateLUT", "concepts": [{"name": "GenerateLUT", "description": "Lookup table tool: GenerateLUT. Depends on: Adaptation.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": ["Adaptation"], "summary": "Module GenerateLUT in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GeneticCode.md", "title": "GeneticCode", "concepts": [{"name": "GeneticCode", "description": "Algorithm module for GeneticCode.", "type": "algorithm"}], "tags": ["algorithm", "biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module GeneticCode in the Semantics domain, imported by 101 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GeneticCodeOptimization.md", "title": "GeneticCodeOptimization", "concepts": [{"name": "GeneticCodeOptimization", "description": "Algorithm module for GeneticCodeOptimization.", "type": "algorithm"}], "tags": ["algorithm", "biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GeneticCodeOptimization in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GeneticGroundUp.md", "title": "GeneticGroundUp", "concepts": [{"name": "GeneticGroundUp", "description": "Algorithm module for GeneticGroundUp. Depends on: FixedPoint, QFactor.", "type": "algorithm"}], "tags": ["algorithm", "biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "QFactor"], "summary": "Module GeneticGroundUp in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Genome18.md", "title": "Genome18", "concepts": [{"name": "Genome18", "description": "Algorithm module for Genome18.", "type": "algorithm"}], "tags": ["algorithm", "biology", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module Genome18 in the Semantics domain, imported by 4 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression.md", "title": "GenomicCompression", "concepts": [{"name": "GenomicCompression", "description": "Compression algorithm module for GenomicCompression. Depends on: GenomicCompression_Components, GenomicCompression_Compression, GenomicCompression_Theorems.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GenomicCompression_Components", "GenomicCompression_Compression", "GenomicCompression_Theorems", "GenomicCompression_NonDriftProof", "FixedPoint", "GenomicCompression_Field", "GenomicCompression_Types", "Functions_MathQuery"], "summary": "Module GenomicCompression in the Semantics domain, imported by 2 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression_Components.md", "title": "GenomicCompression.Components", "concepts": [{"name": "GenomicCompression_Components", "description": "Compression algorithm module for GenomicCompression.Components. Depends on: FixedPoint.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module GenomicCompression.Components in the Semantics domain, imported by 5 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression_Compression.md", "title": "GenomicCompression.Compression", "concepts": [{"name": "GenomicCompression_Compression", "description": "Compression algorithm module for GenomicCompression.Compression. Depends on: FixedPoint, GenomicCompression_Types, GenomicCompression_Field.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "GenomicCompression_Types", "GenomicCompression_Field", "GenomicCompression_Components"], "summary": "Module GenomicCompression.Compression in the Semantics domain, imported by 2 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression_Field.md", "title": "GenomicCompression.Field", "concepts": [{"name": "GenomicCompression_Field", "description": "Compression algorithm module for GenomicCompression.Field. Depends on: FixedPoint, GenomicCompression_Types, GenomicCompression_Components.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "GenomicCompression_Types", "GenomicCompression_Components"], "summary": "Module GenomicCompression.Field in the Semantics domain, imported by 3 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression_NonDriftProof.md", "title": "GenomicCompression.NonDriftProof", "concepts": [{"name": "GenomicCompression_NonDriftProof", "description": "Compression algorithm module for GenomicCompression.NonDriftProof. Depends on: FixedPoint, GenomicCompression_Components.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "GenomicCompression_Components"], "summary": "Module GenomicCompression.NonDriftProof in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression_Theorems.md", "title": "GenomicCompression.Theorems", "concepts": [{"name": "GenomicCompression_Theorems", "description": "Theorem module defining formal proofs for GenomicCompression.Theorems. Depends on: GenomicCompression_Components, GenomicCompression_Compression, FixedPoint.", "type": "theorem"}], "tags": ["compression", "manifold", "module", "semantics", "theorem"], "layer": "Documentation", "dependencies": ["GenomicCompression_Components", "GenomicCompression_Compression", "FixedPoint", "GenomicCompression_Field", "GenomicCompression_Types"], "summary": "Module GenomicCompression.Theorems in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GenomicCompression_Types.md", "title": "GenomicCompression.Types", "concepts": [{"name": "GenomicCompression_Types", "description": "Compression algorithm module for GenomicCompression.Types. Depends on: FixedPoint.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module GenomicCompression.Types in the Semantics domain, imported by 4 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Genus3TopologyMetaprobe.md", "title": "Genus3TopologyMetaprobe", "concepts": [{"name": "Genus3TopologyMetaprobe", "description": "Metaprobe module for testing and validation of the Genus3Topology subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics", "topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Genus3TopologyMetaprobe in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GeometricCompressionWorkspace.md", "title": "GeometricCompressionWorkspace", "concepts": [{"name": "GeometricCompressionWorkspace", "description": "Compression algorithm module for GeometricCompressionWorkspace. Depends on: FixedPoint, ReceiptCore.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "ReceiptCore"], "summary": "Module GeometricCompressionWorkspace in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GeometricTopology.md", "title": "GeometricTopology", "concepts": [{"name": "GeometricTopology", "description": "Topological definition for GeometricTopology. Depends on: FixedPoint, Bind.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics", "topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module GeometricTopology in the Semantics domain, imported by 3 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Geometry_Behavioral.md", "title": "Geometry.Behavioral", "concepts": [{"name": "Geometry_Behavioral", "description": "Geometric definition or structure for Geometry.Behavioral. Depends on: FixedPoint.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Geometry.Behavioral in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Geometry_BehavioralBind.md", "title": "Geometry.BehavioralBind", "concepts": [{"name": "Geometry_BehavioralBind", "description": "Geometric definition or structure for Geometry.BehavioralBind. Depends on: FixedPoint, Geometry_Behavioral.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Geometry_Behavioral"], "summary": "Module Geometry.BehavioralBind in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Geometry_Cascade.md", "title": "Geometry.Cascade", "concepts": [{"name": "Geometry_Cascade", "description": "Geometric definition or structure for Geometry.Cascade. Depends on: FixedPoint.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Geometry.Cascade in the Semantics domain, imported by 2 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Geometry_CascadeBind.md", "title": "Geometry.CascadeBind", "concepts": [{"name": "Geometry_CascadeBind", "description": "Geometric definition or structure for Geometry.CascadeBind. Depends on: FixedPoint, Geometry_CascadeDescent, Geometry_Cascade.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Geometry_CascadeDescent", "Geometry_Cascade"], "summary": "Module Geometry.CascadeBind in the Semantics domain, composing 3 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Geometry_CascadeDescent.md", "title": "Geometry.CascadeDescent", "concepts": [{"name": "Geometry_CascadeDescent", "description": "Geometric definition or structure for Geometry.CascadeDescent. Depends on: FixedPoint, Geometry_Cascade.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Geometry_Cascade"], "summary": "Module Geometry.CascadeDescent in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Geometry_ImplicitShellLattice.md", "title": "Geometry.ImplicitShellLattice", "concepts": [{"name": "Geometry_ImplicitShellLattice", "description": "Geometric definition or structure for Geometry.ImplicitShellLattice. Depends on: FixedPoint, NUVMATH.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "NUVMATH"], "summary": "Module Geometry.ImplicitShellLattice in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Github.md", "title": "Github", "concepts": [{"name": "Github", "description": "GitHub integration tool: Github. Depends on: Bind.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module Github in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GlymphaticPumpConstraint.md", "title": "GlymphaticPumpConstraint", "concepts": [{"name": "GlymphaticPumpConstraint", "description": "Constraint invariant for GlymphaticPumpConstraint.", "type": "invariant"}], "tags": ["invariant", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module GlymphaticPumpConstraint in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GoldenAngleEncoding.md", "title": "GoldenAngleEncoding", "concepts": [{"name": "GoldenAngleEncoding", "description": "Encoding algorithm for GoldenAngleEncoding. Depends on: FixedPoint.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module GoldenAngleEncoding in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GoldenSpiralManifold.md", "title": "GoldenSpiralManifold", "concepts": [{"name": "GoldenSpiralManifold", "description": "Mathematical primitive: GoldenSpiralManifold.", "type": "primitive"}], "tags": ["manifold", "module", "primitive", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GoldenSpiralManifold in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GoldenSpiralNavigation.md", "title": "GoldenSpiralNavigation", "concepts": [{"name": "GoldenSpiralNavigation", "description": "Navigation algorithm for GoldenSpiralNavigation.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GoldenSpiralNavigation in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GossipFlipMessage.md", "title": "GossipFlipMessage", "concepts": [{"name": "GossipFlipMessage", "description": "Message protocol for GossipFlipMessage.", "type": "protocol"}], "tags": ["manifold", "module", "protocol", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module GossipFlipMessage in the Semantics domain, imported by 3 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GpuDutyAssignment.md", "title": "GpuDutyAssignment", "concepts": [{"name": "GpuDutyAssignment", "description": "GPU resource architecture: GpuDutyAssignment.", "type": "architecture"}], "tags": ["architecture", "gpu", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module GpuDutyAssignment in the Semantics domain, imported by 3 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/GradientPathMap.md", "title": "GradientPathMap", "concepts": [{"name": "GradientPathMap", "description": "Gradient path mapping: GradientPathMap.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module GradientPathMap in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Graph.md", "title": "Graph", "concepts": [{"name": "Graph", "description": "Graph structure: Graph. Depends on: Atoms, Projections, Lemmas.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Atoms", "Projections", "Lemmas"], "summary": "Module Graph in the Semantics domain, imported by 3 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HachimojiCostRefinement.md", "title": "HachimojiCostRefinement", "concepts": [{"name": "HachimojiCostRefinement", "description": "Hachimoji pipeline: HachimojiCostRefinement.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module HachimojiCostRefinement in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HachimojiEquationMetaprobe.md", "title": "HachimojiEquationMetaprobe", "concepts": [{"name": "HachimojiEquationMetaprobe", "description": "Metaprobe module for testing and validation of the HachimojiEquation subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module HachimojiEquationMetaprobe in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HachimojiPipeline.md", "title": "HachimojiPipeline", "concepts": [{"name": "HachimojiPipeline", "description": "Hachimoji pipeline: HachimojiPipeline. Depends on: FixedPoint, Hardware_AdaptiveFabric, Timing.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Hardware_AdaptiveFabric", "Timing", "SwarmDesignReview"], "summary": "Module HachimojiPipeline in the Semantics domain, composing 4 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HamiltonianFormal.md", "title": "HamiltonianFormal", "concepts": [{"name": "HamiltonianFormal", "description": "Hamiltonian formalism: HamiltonianFormal. Depends on: AnalysisFoundations.", "type": "definition"}], "tags": ["definition", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": ["AnalysisFoundations"], "summary": "Module HamiltonianFormal in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HamiltonianVerification.md", "title": "HamiltonianVerification", "concepts": [{"name": "HamiltonianVerification", "description": "Verification module for HamiltonianVerification proofs and checks. Depends on: HamiltonianFormal.", "type": "gate"}], "tags": ["gate", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": ["HamiltonianFormal"], "summary": "Module HamiltonianVerification in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_AdaptiveFabric.md", "title": "Hardware.AdaptiveFabric", "concepts": [{"name": "Hardware_AdaptiveFabric", "description": "Architecture module defining Hardware.AdaptiveFabric structure and layout. Depends on: FixedPoint.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Hardware.AdaptiveFabric in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_AgenticHardware.md", "title": "Hardware.AgenticHardware", "concepts": [{"name": "Hardware_AgenticHardware", "description": "Architecture module defining Hardware.AgenticHardware structure and layout. Depends on: FixedPoint.", "type": "architecture"}], "tags": ["agent", "architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Hardware.AgenticHardware in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_Blitter6502OISC.md", "title": "Hardware.Blitter6502OISC", "concepts": [{"name": "Hardware_Blitter6502OISC", "description": "Architecture module defining Hardware.Blitter6502OISC structure and layout.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module Hardware.Blitter6502OISC in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_CBFHardwareMetaprobe.md", "title": "Hardware.CBFHardwareMetaprobe", "concepts": [{"name": "Hardware_CBFHardwareMetaprobe", "description": "Metaprobe module for testing and validation of the Hardware CBFHardware subsystem.", "type": "gate"}], "tags": ["gate", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module Hardware.CBFHardwareMetaprobe in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_HardwareExtraction.md", "title": "Hardware.HardwareExtraction", "concepts": [{"name": "Hardware_HardwareExtraction", "description": "Architecture module defining Hardware.HardwareExtraction structure and layout. Depends on: FixedPoint.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Hardware.HardwareExtraction in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_LaserPathCell.md", "title": "Hardware.LaserPathCell", "concepts": [{"name": "Hardware_LaserPathCell", "description": "Architecture module defining Hardware.LaserPathCell structure and layout. Depends on: FixedPoint, Geometry_ImplicitShellLattice.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Geometry_ImplicitShellLattice"], "summary": "Module Hardware.LaserPathCell in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_TangNano9K.md", "title": "Hardware.TangNano9K", "concepts": [{"name": "Hardware_TangNano9K", "description": "Architecture module defining Hardware.TangNano9K structure and layout. Depends on: FixedPoint, Genome18.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Genome18"], "summary": "Module Hardware.TangNano9K in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_TangNano9K_BitstreamWitness.md", "title": "Hardware.TangNano9K.BitstreamWitness", "concepts": [{"name": "Hardware_TangNano9K_BitstreamWitness", "description": "Architecture module defining Hardware.TangNano9K.BitstreamWitness structure and layout. Depends on: Hardware_TangNano9K.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Hardware_TangNano9K"], "summary": "Module Hardware.TangNano9K.BitstreamWitness in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_TangNano9K_NIICore.md", "title": "Hardware.TangNano9K.NIICore", "concepts": [{"name": "Hardware_TangNano9K_NIICore", "description": "Architecture module defining Hardware.TangNano9K.NIICore structure and layout.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module Hardware.TangNano9K.NIICore in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hardware_TangNano9K_RGFlowFAMM.md", "title": "Hardware.TangNano9K.RGFlowFAMM", "concepts": [{"name": "Hardware_TangNano9K_RGFlowFAMM", "description": "Architecture module defining Hardware.TangNano9K.RGFlowFAMM structure and layout.", "type": "architecture"}], "tags": ["architecture", "hardware", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module Hardware.TangNano9K.RGFlowFAMM in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HermesAgentIntegration.md", "title": "HermesAgentIntegration", "concepts": [{"name": "HermesAgentIntegration", "description": "Integration module connecting HermesAgentIntegration to external systems. Depends on: ReceiptCore, FixedPoint.", "type": "bridge"}], "tags": ["agent", "bridge", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["ReceiptCore", "FixedPoint"], "summary": "Module HermesAgentIntegration in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HolographicProjection.md", "title": "HolographicProjection", "concepts": [{"name": "HolographicProjection", "description": "Graph structure: HolographicProjection. Depends on: FixedPoint.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module HolographicProjection in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HormoneDeriv.md", "title": "HormoneDeriv", "concepts": [{"name": "HormoneDeriv", "description": "Hormone derivative primitive: HormoneDeriv. Depends on: FixedPoint, Bind.", "type": "primitive"}], "tags": ["manifold", "module", "primitive", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module HormoneDeriv in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HotPathColdPath.md", "title": "HotPathColdPath", "concepts": [{"name": "HotPathColdPath", "description": "Hot/cold path optimization pattern: HotPathColdPath. Depends on: FixedPoint.", "type": "pattern"}], "tags": ["manifold", "module", "pattern", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module HotPathColdPath in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HumanNeuralCompression.md", "title": "HumanNeuralCompression", "concepts": [{"name": "HumanNeuralCompression", "description": "Compression algorithm module for HumanNeuralCompression. Depends on: OpenWorm, ElectronOrbitalConstraint, CellSnowballConstraint.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "neural", "semantics"], "layer": "Documentation", "dependencies": ["OpenWorm", "ElectronOrbitalConstraint", "CellSnowballConstraint", "StreamCompression", "FixedPoint", "GlymphaticPumpConstraint", "TopologicalPersistence"], "summary": "Module HumanNeuralCompression in the Semantics domain, composing 7 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HumanNeuralCompressionVerification.md", "title": "HumanNeuralCompressionVerification", "concepts": [{"name": "HumanNeuralCompressionVerification", "description": "Verification module for HumanNeuralCompressionVerification proofs and checks.", "type": "gate"}], "tags": ["compression", "gate", "manifold", "module", "neural", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module HumanNeuralCompressionVerification in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hutter.md", "title": "Hutter", "concepts": [{"name": "Hutter", "description": "Hutter Prize compression module: Hutter. Depends on: Bind.", "type": "algorithm"}], "tags": ["algorithm", "hutter-prize", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module Hutter in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HutterMaximumCompression.md", "title": "HutterMaximumCompression", "concepts": [{"name": "HutterMaximumCompression", "description": "Compression algorithm module for HutterMaximumCompression. Depends on: AVMR, Hutter, FixedPoint.", "type": "algorithm"}], "tags": ["algorithm", "compression", "hutter-prize", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["AVMR", "Hutter", "FixedPoint", "Genome18", "HutterPrizeRGFlow", "Bind"], "summary": "Module HutterMaximumCompression in the Semantics domain, composing 6 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HutterPrizeCompression.md", "title": "HutterPrizeCompression", "concepts": [{"name": "HutterPrizeCompression", "description": "Compression algorithm module for HutterPrizeCompression. Depends on: MassNumberAdapter, GpuDutyAssignment.", "type": "algorithm"}], "tags": ["algorithm", "compression", "hutter-prize", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["MassNumberAdapter", "GpuDutyAssignment"], "summary": "Module HutterPrizeCompression in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HutterPrizeFlow.md", "title": "HutterPrizeFlow", "concepts": [{"name": "HutterPrizeFlow", "description": "Flow pattern module defining data/control paths for HutterPrizeFlow.", "type": "pattern"}], "tags": ["hutter-prize", "manifold", "module", "pattern", "semantics", "sink"], "layer": "Documentation", "dependencies": [], "summary": "Module HutterPrizeFlow in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HutterPrizeISA.md", "title": "HutterPrizeISA", "concepts": [{"name": "HutterPrizeISA", "description": "Hutter Prize compression module: HutterPrizeISA. Depends on: FixedPoint, Timing, SwarmDesignReview.", "type": "algorithm"}], "tags": ["algorithm", "hutter-prize", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Timing", "SwarmDesignReview"], "summary": "Module HutterPrizeISA in the Semantics domain, composing 3 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HutterPrizeRGFlow.md", "title": "HutterPrizeRGFlow", "concepts": [{"name": "HutterPrizeRGFlow", "description": "Flow pattern module defining data/control paths for HutterPrizeRGFlow. Depends on: FixedPoint, Biology_RGFlowBioinformatics.", "type": "pattern"}], "tags": ["hutter-prize", "manifold", "module", "pattern", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Biology_RGFlowBioinformatics"], "summary": "Module HutterPrizeRGFlow in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HybridConvergence.md", "title": "HybridConvergence", "concepts": [{"name": "HybridConvergence", "description": "Code generation tool: HybridConvergence.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module HybridConvergence in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HybridTSMPISTTorus.md", "title": "HybridTSMPISTTorus", "concepts": [{"name": "HybridTSMPISTTorus", "description": "Hybrid convergence architecture: HybridTSMPISTTorus. Depends on: ManifoldFlow, PistBridge, FixedPoint.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["ManifoldFlow", "PistBridge", "FixedPoint", "VirtualWarpMetric", "MasterEquation", "FiveDTorusTopology"], "summary": "Module HybridTSMPISTTorus in the Semantics domain, composing 6 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HydrogenicPhiTorsionBraid.md", "title": "HydrogenicPhiTorsionBraid", "concepts": [{"name": "HydrogenicPhiTorsionBraid", "description": "Code generation tool: HydrogenicPhiTorsionBraid. Depends on: Bind.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module HydrogenicPhiTorsionBraid in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HyperFlow.md", "title": "HyperFlow", "concepts": [{"name": "HyperFlow", "description": "Flow pattern module defining data/control paths for HyperFlow. Depends on: LocalDerivative, FixedPoint, DynamicCanal.", "type": "pattern"}], "tags": ["manifold", "module", "pattern", "semantics"], "layer": "Documentation", "dependencies": ["LocalDerivative", "FixedPoint", "DynamicCanal", "MetricCore"], "summary": "Module HyperFlow in the Semantics domain, imported by 2 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HyperbolicEncoding.md", "title": "HyperbolicEncoding", "concepts": [{"name": "HyperbolicEncoding", "description": "Encoding algorithm for HyperbolicEncoding.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module HyperbolicEncoding in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/HypercubeTopology.md", "title": "HypercubeTopology", "concepts": [{"name": "HypercubeTopology", "description": "Topological definition for HypercubeTopology. Depends on: FixedPoint.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics", "topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module HypercubeTopology in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Hyperfluid.md", "title": "Hyperfluid", "concepts": [{"name": "Hyperfluid", "description": "Hyperstructure definition: Hyperfluid. Depends on: FixedPoint, UnifiedSchema.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "UnifiedSchema"], "summary": "Module Hyperfluid in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/InfoThermodynamicsMetaprobe.md", "title": "InfoThermodynamicsMetaprobe", "concepts": [{"name": "InfoThermodynamicsMetaprobe", "description": "Metaprobe module for testing and validation of the InfoThermodynamics subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module InfoThermodynamicsMetaprobe in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/InformationConservation.md", "title": "InformationConservation", "concepts": [{"name": "InformationConservation", "description": "Information conservation invariant: InformationConservation.", "type": "invariant"}], "tags": ["invariant", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module InformationConservation in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Ingestion.md", "title": "Ingestion", "concepts": [{"name": "Ingestion", "description": "Ingestion recipe: Ingestion. Depends on: Adaptation.", "type": "recipe"}], "tags": ["manifold", "module", "recipe", "semantics"], "layer": "Documentation", "dependencies": ["Adaptation"], "summary": "Module Ingestion in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/InteratomicPotential.md", "title": "InteratomicPotential", "concepts": [{"name": "InteratomicPotential", "description": "Potential definition: InteratomicPotential. Depends on: FixedPoint, Bind.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module InteratomicPotential in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/IntrinsicGeometry.md", "title": "IntrinsicGeometry", "concepts": [{"name": "IntrinsicGeometry", "description": "Geometric definition or structure for IntrinsicGeometry.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module IntrinsicGeometry in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/JouleEnergy.md", "title": "JouleEnergy", "concepts": [{"name": "JouleEnergy", "description": "Energy definition: JouleEnergy. Depends on: FixedPoint.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module JouleEnergy in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/JsonLSurfaceConnector.md", "title": "JsonLSurfaceConnector", "concepts": [{"name": "JsonLSurfaceConnector", "description": "JSON surface connector: JsonLSurfaceConnector. Depends on: Bind.", "type": "bridge"}], "tags": ["bridge", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Bind"], "summary": "Module JsonLSurfaceConnector in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/KillerCriterion.md", "title": "KillerCriterion", "concepts": [{"name": "KillerCriterion", "description": "Killer criterion gate: KillerCriterion. Depends on: KimiProber, Adaptation, Security.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["KimiProber", "Adaptation", "Security", "Constitution"], "summary": "Module KillerCriterion in the Semantics domain, composing 4 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/KimiProber.md", "title": "KimiProber", "concepts": [{"name": "KimiProber", "description": "Probe module for inspecting KimiProber state. Depends on: Waveprobe, Adaptation, AVMR.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Waveprobe", "Adaptation", "AVMR"], "summary": "Module KimiProber in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/LandauerCompression.md", "title": "LandauerCompression", "concepts": [{"name": "LandauerCompression", "description": "Compression algorithm module for LandauerCompression. Depends on: FixedPoint, OrthogonalAmmr.", "type": "algorithm"}], "tags": ["algorithm", "compression", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "OrthogonalAmmr"], "summary": "Module LandauerCompression in the Semantics domain, imported by 4 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/LaviGen.md", "title": "LaviGen", "concepts": [{"name": "LaviGen", "description": "LaviGen tool: LaviGen.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module LaviGen in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Layer3Metaprobe.md", "title": "Layer3Metaprobe", "concepts": [{"name": "Layer3Metaprobe", "description": "Metaprobe module for testing and validation of the Layer3 subsystem. Depends on: FixedPoint, Bind, BitcoinMetaprobe.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "BitcoinMetaprobe"], "summary": "Module Layer3Metaprobe in the Semantics domain, composing 3 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Layer3TransmissionModel.md", "title": "Layer3TransmissionModel", "concepts": [{"name": "Layer3TransmissionModel", "description": "Layer architecture: Layer3TransmissionModel. Depends on: FixedPoint, Bind.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module Layer3TransmissionModel in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Lean4ImprovementProofs.md", "title": "Lean4ImprovementProofs", "concepts": [{"name": "Lean4ImprovementProofs", "description": "Lean integration module: Lean4ImprovementProofs. Depends on: FixedPoint.", "type": "bridge"}], "tags": ["bridge", "lean", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module Lean4ImprovementProofs in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/LeanBridge.md", "title": "LeanBridge", "concepts": [{"name": "LeanBridge", "description": "Bridge module connecting LeanBridge to other subsystems.", "type": "bridge"}], "tags": ["bridge", "lean", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module LeanBridge in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/LeanGPTTSMLayer.md", "title": "LeanGPTTSMLayer", "concepts": [{"name": "LeanGPTTSMLayer", "description": "Lean integration module: LeanGPTTSMLayer. Depends on: Selfies, FixedPoint, Smiles.", "type": "bridge"}], "tags": ["bridge", "lean", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Selfies", "FixedPoint", "Smiles"], "summary": "Module LeanGPTTSMLayer in the Semantics domain, composing 3 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Lemmas.md", "title": "Lemmas", "concepts": [{"name": "Lemmas", "description": "Lemma module: Lemmas. Depends on: Atoms.", "type": "theorem"}], "tags": ["manifold", "module", "semantics", "theorem"], "layer": "Documentation", "dependencies": ["Atoms"], "summary": "Module Lemmas in the Semantics domain, imported by 3 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/LocalDerivative.md", "title": "LocalDerivative", "concepts": [{"name": "LocalDerivative", "description": "Local derivative primitive: LocalDerivative. Depends on: FixedPoint.", "type": "primitive"}], "tags": ["manifold", "module", "primitive", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module LocalDerivative in the Semantics domain, imported by 9 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/LocalExpansion.md", "title": "LocalExpansion", "concepts": [{"name": "LocalExpansion", "description": "Local expansion algorithm: LocalExpansion. Depends on: LocalDerivative, DynamicCanal.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["LocalDerivative", "DynamicCanal"], "summary": "Module LocalExpansion in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MISignal.md", "title": "MISignal", "concepts": [{"name": "MISignal", "description": "Signal primitive for MISignal. Depends on: FixedPoint, Bind.", "type": "primitive"}], "tags": ["manifold", "module", "primitive", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module MISignal in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MNLOGQuaternionBridge.md", "title": "MNLOGQuaternionBridge", "concepts": [{"name": "MNLOGQuaternionBridge", "description": "Bridge module connecting MNLOGQuaternionBridge to other subsystems. Depends on: FixedPoint, Bind, MassNumberLinter.", "type": "bridge"}], "tags": ["bridge", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "MassNumberLinter"], "summary": "Module MNLOGQuaternionBridge in the Semantics domain, composing 3 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MOFCO2Reduction.md", "title": "MOFCO2Reduction", "concepts": [{"name": "MOFCO2Reduction", "description": "Reduction algorithm: MOFCO2Reduction. Depends on: FixedPoint.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MOFCO2Reduction in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MOIMMetaprobe.md", "title": "MOIMMetaprobe", "concepts": [{"name": "MOIMMetaprobe", "description": "Metaprobe module for testing and validation of the MOIM subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MOIMMetaprobe in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MS3CNestedReductionGearMetaprobe.md", "title": "MS3CNestedReductionGearMetaprobe", "concepts": [{"name": "MS3CNestedReductionGearMetaprobe", "description": "Metaprobe module for testing and validation of the MS3CNestedReductionGear subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MS3CNestedReductionGearMetaprobe in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MagnetoPlasma.md", "title": "MagnetoPlasma", "concepts": [{"name": "MagnetoPlasma", "description": "Plasma physics definition: MagnetoPlasma. Depends on: LocalDerivative, OrderedFieldTokens, PhysicsLagrangian.", "type": "definition"}], "tags": ["definition", "hub", "manifold", "module", "physics", "semantics"], "layer": "Documentation", "dependencies": ["LocalDerivative", "OrderedFieldTokens", "PhysicsLagrangian", "PhysicsEuclidean", "PhysicsScalar", "HyperFlow", "ElectromagneticSpectrum", "RegimeCore"], "summary": "Module MagnetoPlasma in the Semantics domain, imported by 4 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ManifoldFlow.md", "title": "ManifoldFlow", "concepts": [{"name": "ManifoldFlow", "description": "Flow pattern module defining data/control paths for ManifoldFlow. Depends on: BraidBracket, DynamicCanal.", "type": "pattern"}], "tags": ["manifold", "module", "pattern", "semantics"], "layer": "Documentation", "dependencies": ["BraidBracket", "DynamicCanal"], "summary": "Module ManifoldFlow in the Semantics domain, imported by 4 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ManifoldNetworking.md", "title": "ManifoldNetworking", "concepts": [{"name": "ManifoldNetworking", "description": "Manifold structure definition: ManifoldNetworking. Depends on: FixedPoint, Bind.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module ManifoldNetworking in the Semantics domain, imported by 6 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ManifoldPotential.md", "title": "ManifoldPotential", "concepts": [{"name": "ManifoldPotential", "description": "Manifold structure definition: ManifoldPotential. Depends on: BoundaryDynamics, MultiBodyField, ManifoldStructures.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["BoundaryDynamics", "MultiBodyField", "ManifoldStructures", "ExoticSpacetime", "PhysicsScalar", "CriticalityDynamics", "DomainState", "CosmicStructure", "Errors", "RegimeCore"], "summary": "Module ManifoldPotential in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ManifoldStructures.md", "title": "ManifoldStructures", "concepts": [{"name": "ManifoldStructures", "description": "Manifold structure definition: ManifoldStructures. Depends on: MagnetoPlasma, SpikingDynamics, ExoticSpacetime.", "type": "definition"}], "tags": ["definition", "hub", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["MagnetoPlasma", "SpikingDynamics", "ExoticSpacetime", "PhysicsScalar", "RegimeCore", "Errors", "ElectromagneticSpectrum"], "summary": "Module ManifoldStructures in the Semantics domain, imported by 7 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ManifoldTopology.md", "title": "ManifoldTopology", "concepts": [{"name": "ManifoldTopology", "description": "Topological definition for ManifoldTopology.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics", "topology"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module ManifoldTopology in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ManyWorldsAddress.md", "title": "ManyWorldsAddress", "concepts": [{"name": "ManyWorldsAddress", "description": "Module definition: ManyWorldsAddress. Depends on: GeometricTopology, FixedPoint.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["GeometricTopology", "FixedPoint"], "summary": "Module ManyWorldsAddress in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MassNumberAdapter.md", "title": "MassNumberAdapter", "concepts": [{"name": "MassNumberAdapter", "description": "Adapter module for MassNumberAdapter interface compatibility. Depends on: FixedPoint.", "type": "bridge"}], "tags": ["bridge", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MassNumberAdapter in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MassNumberLinter.md", "title": "MassNumberLinter", "concepts": [{"name": "MassNumberLinter", "description": "Linter tool for validating MassNumberLinter constraints. Depends on: DecagonZetaCrossing, FixedPoint.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": ["DecagonZetaCrossing", "FixedPoint"], "summary": "Module MassNumberLinter in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MassNumberMetricClosure.md", "title": "MassNumberMetricClosure", "concepts": [{"name": "MassNumberMetricClosure", "description": "Metric definition: MassNumberMetricClosure. Depends on: RealityContractMassNumber.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["RealityContractMassNumber"], "summary": "Module MassNumberMetricClosure in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MasterEquation.md", "title": "MasterEquation", "concepts": [{"name": "MasterEquation", "description": "Master equation definition: MasterEquation. Depends on: ManifoldFlow, BraidStrand, BraidBracket.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["ManifoldFlow", "BraidStrand", "BraidBracket", "FixedPoint", "VirtualWarpMetric", "DynamicCanal"], "summary": "Module MasterEquation in the Semantics domain, imported by 2 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MechanicalLogic.md", "title": "MechanicalLogic", "concepts": [{"name": "MechanicalLogic", "description": "Mechanical logic primitive: MechanicalLogic. Depends on: FixedPoint, Bind.", "type": "primitive"}], "tags": ["manifold", "module", "primitive", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module MechanicalLogic in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MengerSpongeFractalAddressing.md", "title": "MengerSpongeFractalAddressing", "concepts": [{"name": "MengerSpongeFractalAddressing", "description": "Fractal addressing algorithm: MengerSpongeFractalAddressing. Depends on: FixedPoint, PistBridge.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "PistBridge"], "summary": "Module MengerSpongeFractalAddressing in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MereotopologicalSheafHypergraph.md", "title": "MereotopologicalSheafHypergraph", "concepts": [{"name": "MereotopologicalSheafHypergraph", "description": "Hyperstructure definition: MereotopologicalSheafHypergraph. Depends on: FixedPoint.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MereotopologicalSheafHypergraph in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MereotopologicalVideo.md", "title": "MereotopologicalVideo", "concepts": [{"name": "MereotopologicalVideo", "description": "Video processing architecture: MereotopologicalVideo. Depends on: VideoPhysics, MereotopologicalSheafHypergraph.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["VideoPhysics", "MereotopologicalSheafHypergraph"], "summary": "Module MereotopologicalVideo in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MetadataSurfaceComputation.md", "title": "MetadataSurfaceComputation", "concepts": [{"name": "MetadataSurfaceComputation", "description": "Metadata surface computation: MetadataSurfaceComputation.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics", "sink"], "layer": "Documentation", "dependencies": [], "summary": "Module MetadataSurfaceComputation in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Metatype.md", "title": "Metatype", "concepts": [{"name": "Metatype", "description": "Metatype definition: Metatype.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module Metatype in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MetricCore.md", "title": "MetricCore", "concepts": [{"name": "MetricCore", "description": "Core architecture module for MetricCore. Depends on: FixedPoint.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MetricCore in the Semantics domain, imported by 4 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MinimalBitcoinL3.md", "title": "MinimalBitcoinL3", "concepts": [{"name": "MinimalBitcoinL3", "description": "Bitcoin L3 architecture: MinimalBitcoinL3. Depends on: FixedPoint, Bind, BitcoinMetaprobe.", "type": "architecture"}], "tags": ["architecture", "bitcoin", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "BitcoinMetaprobe"], "summary": "Module MinimalBitcoinL3 in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MinimalLayer3Eval.md", "title": "MinimalLayer3Eval", "concepts": [{"name": "MinimalLayer3Eval", "description": "Layer architecture: MinimalLayer3Eval. Depends on: FixedPoint, Bind, MinimalBitcoinL3.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "MinimalBitcoinL3"], "summary": "Module MinimalLayer3Eval in the Semantics domain, composing 3 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MoECache.md", "title": "MoECache", "concepts": [{"name": "MoECache", "description": "Caching architecture for MoECache.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module MoECache in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MorphicDSP.md", "title": "MorphicDSP", "concepts": [{"name": "MorphicDSP", "description": "Morphic field definition: MorphicDSP. Depends on: MorphicScalar, FixedPoint, OEPI.", "type": "definition"}], "tags": ["definition", "manifold", "module", "morphic", "semantics"], "layer": "Documentation", "dependencies": ["MorphicScalar", "FixedPoint", "OEPI"], "summary": "Module MorphicDSP in the Semantics domain, composing 3 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MorphicDSPMetaprobe.md", "title": "MorphicDSPMetaprobe", "concepts": [{"name": "MorphicDSPMetaprobe", "description": "Metaprobe module for testing and validation of the MorphicDSP subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "morphic", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MorphicDSPMetaprobe in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MorphicLocalField.md", "title": "MorphicLocalField", "concepts": [{"name": "MorphicLocalField", "description": "Field definition for MorphicLocalField.", "type": "definition"}], "tags": ["definition", "manifold", "module", "morphic", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module MorphicLocalField in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MorphicNeuralNetwork.md", "title": "MorphicNeuralNetwork", "concepts": [{"name": "MorphicNeuralNetwork", "description": "Neural architecture module: MorphicNeuralNetwork. Depends on: FixedPoint, Bind.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "morphic", "neural", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module MorphicNeuralNetwork in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MorphicScalar.md", "title": "MorphicScalar", "concepts": [{"name": "MorphicScalar", "description": "Morphic field definition: MorphicScalar. Depends on: FixedPoint, Bind.", "type": "definition"}], "tags": ["definition", "manifold", "module", "morphic", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module MorphicScalar in the Semantics domain, imported by 2 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MorphicTopologyMetaprobe.md", "title": "MorphicTopologyMetaprobe", "concepts": [{"name": "MorphicTopologyMetaprobe", "description": "Metaprobe module for testing and validation of the MorphicTopology subsystem. Depends on: FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "morphic", "semantics", "topology"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "Module MorphicTopologyMetaprobe in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/MultiBodyField.md", "title": "MultiBodyField", "concepts": [{"name": "MultiBodyField", "description": "Field definition for MultiBodyField. Depends on: BoundaryDynamics, MagnetoPlasma, SpikingDynamics.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["BoundaryDynamics", "MagnetoPlasma", "SpikingDynamics", "ExoticSpacetime", "PhysicsScalar", "ElectromagneticSpectrum", "RegimeCore"], "summary": "Module MultiBodyField in the Semantics domain, imported by 2 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NGemetry.md", "title": "NGemetry", "concepts": [{"name": "NGemetry", "description": "Module definition: NGemetry.", "type": "definition"}], "tags": ["definition", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NGemetry in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NICProbe.md", "title": "NICProbe", "concepts": [{"name": "NICProbe", "description": "Probe module for inspecting NICProbe state. Depends on: FixedPoint, Bind, ASICTopology.", "type": "gate"}], "tags": ["gate", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind", "ASICTopology"], "summary": "Module NICProbe in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore.md", "title": "NIICore", "concepts": [{"name": "NIICore", "description": "Core architecture module for NIICore. Depends on: FixedPoint, Timing, SwarmDesignReview.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Timing", "SwarmDesignReview"], "summary": "Module NIICore in the Semantics domain, imported by 4 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_CognitiveLoadIntegration.md", "title": "NIICore.CognitiveLoadIntegration", "concepts": [{"name": "NIICore_CognitiveLoadIntegration", "description": "Integration module connecting NIICore.CognitiveLoadIntegration to external systems.", "type": "bridge"}], "tags": ["bridge", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NIICore.CognitiveLoadIntegration in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_DifferentialAttentionMorphing.md", "title": "NIICore.DifferentialAttentionMorphing", "concepts": [{"name": "NIICore_DifferentialAttentionMorphing", "description": "Core architecture module for NIICore.DifferentialAttentionMorphing.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics", "sink"], "layer": "Documentation", "dependencies": [], "summary": "Module NIICore.DifferentialAttentionMorphing in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_HierarchicalController.md", "title": "NIICore.HierarchicalController", "concepts": [{"name": "NIICore_HierarchicalController", "description": "Core architecture module for NIICore.HierarchicalController.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module NIICore.HierarchicalController in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_MereotopologicalSheafHypergraph.md", "title": "NIICore.MereotopologicalSheafHypergraph", "concepts": [{"name": "NIICore_MereotopologicalSheafHypergraph", "description": "Core architecture module for NIICore.MereotopologicalSheafHypergraph. Depends on: NIICore_MorphicFieldCategory.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["NIICore_MorphicFieldCategory"], "summary": "Module NIICore.MereotopologicalSheafHypergraph in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_MetaLearning.md", "title": "NIICore.MetaLearning", "concepts": [{"name": "NIICore_MetaLearning", "description": "Core architecture module for NIICore.MetaLearning.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module NIICore.MetaLearning in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_MorphicCoreId.md", "title": "NIICore.MorphicCoreId", "concepts": [{"name": "NIICore_MorphicCoreId", "description": "Core architecture module for NIICore.MorphicCoreId.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "morphic", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NIICore.MorphicCoreId in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_MorphicFieldCategory.md", "title": "NIICore.MorphicFieldCategory", "concepts": [{"name": "NIICore_MorphicFieldCategory", "description": "Field definition for NIICore.MorphicFieldCategory.", "type": "definition"}], "tags": ["definition", "manifold", "module", "morphic", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Module NIICore.MorphicFieldCategory in the Semantics domain, imported by 2 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_MorphingTests.md", "title": "NIICore.MorphingTests", "concepts": [{"name": "NIICore_MorphingTests", "description": "Core architecture module for NIICore.MorphingTests.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics", "testing"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NIICore.MorphingTests in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_MorphingTriggers.md", "title": "NIICore.MorphingTriggers", "concepts": [{"name": "NIICore_MorphingTriggers", "description": "Core architecture module for NIICore.MorphingTriggers.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NIICore.MorphingTriggers in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_PredictiveResourceAllocation.md", "title": "NIICore.PredictiveResourceAllocation", "concepts": [{"name": "NIICore_PredictiveResourceAllocation", "description": "Core architecture module for NIICore.PredictiveResourceAllocation.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics", "sink"], "layer": "Documentation", "dependencies": [], "summary": "Module NIICore.PredictiveResourceAllocation in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_SemanticAnalysis.md", "title": "NIICore.SemanticAnalysis", "concepts": [{"name": "NIICore_SemanticAnalysis", "description": "Core architecture module for NIICore.SemanticAnalysis. Depends on: FixedPoint, NIICore, SwarmDesignReview.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantic", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "NIICore", "SwarmDesignReview"], "summary": "Module NIICore.SemanticAnalysis in the Semantics domain, imported by 2 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_SemanticCapabilitySystem.md", "title": "NIICore.SemanticCapabilitySystem", "concepts": [{"name": "NIICore_SemanticCapabilitySystem", "description": "Core architecture module for NIICore.SemanticCapabilitySystem.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantic", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NIICore.SemanticCapabilitySystem in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_SemanticRGFlow.md", "title": "NIICore.SemanticRGFlow", "concepts": [{"name": "NIICore_SemanticRGFlow", "description": "Flow pattern module defining data/control paths for NIICore.SemanticRGFlow. Depends on: NIICore_SheafPersistentRGHybrid.", "type": "pattern"}], "tags": ["manifold", "module", "nii-core", "pattern", "semantic", "semantics"], "layer": "Documentation", "dependencies": ["NIICore_SheafPersistentRGHybrid"], "summary": "Module NIICore.SemanticRGFlow in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_SemanticStateMorphism.md", "title": "NIICore.SemanticStateMorphism", "concepts": [{"name": "NIICore_SemanticStateMorphism", "description": "Core architecture module for NIICore.SemanticStateMorphism.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantic", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NIICore.SemanticStateMorphism in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_SheafPersistentRGHybrid.md", "title": "NIICore.SheafPersistentRGHybrid", "concepts": [{"name": "NIICore_SheafPersistentRGHybrid", "description": "Core architecture module for NIICore.SheafPersistentRGHybrid. Depends on: NIICore_HierarchicalController, NIICore_MorphicFieldCategory.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["NIICore_HierarchicalController", "NIICore_MorphicFieldCategory"], "summary": "Module NIICore.SheafPersistentRGHybrid in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_SurfaceDriver.md", "title": "NIICore.SurfaceDriver", "concepts": [{"name": "NIICore_SurfaceDriver", "description": "Core architecture module for NIICore.SurfaceDriver. Depends on: FixedPoint, Timing, NIICore.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Timing", "NIICore", "SwarmDesignReview"], "summary": "Module NIICore.SurfaceDriver in the Semantics domain, composing 4 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_TranslationEngine.md", "title": "NIICore.TranslationEngine", "concepts": [{"name": "NIICore_TranslationEngine", "description": "Core architecture module for NIICore.TranslationEngine. Depends on: FixedPoint, NIICore_SemanticAnalysis, NIICore.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "NIICore_SemanticAnalysis", "NIICore", "SwarmDesignReview"], "summary": "Module NIICore.TranslationEngine in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_UncertaintyMetaPredictiveDifferential.md", "title": "NIICore.UncertaintyMetaPredictiveDifferential", "concepts": [{"name": "NIICore_UncertaintyMetaPredictiveDifferential", "description": "Core architecture module for NIICore.UncertaintyMetaPredictiveDifferential. Depends on: NIICore_MetaLearning, NIICore_PredictiveResourceAllocation, NIICore_DifferentialAttentionMorphing.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["NIICore_MetaLearning", "NIICore_PredictiveResourceAllocation", "NIICore_DifferentialAttentionMorphing", "NIICore_UncertaintyQuantification"], "summary": "Module NIICore.UncertaintyMetaPredictiveDifferential in the Semantics domain, composing 4 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_UncertaintyQuantification.md", "title": "NIICore.UncertaintyQuantification", "concepts": [{"name": "NIICore_UncertaintyQuantification", "description": "Core architecture module for NIICore.UncertaintyQuantification.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "nii-core", "semantics", "sink"], "layer": "Documentation", "dependencies": [], "summary": "Module NIICore.UncertaintyQuantification in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NIICore_Verification.md", "title": "NIICore.Verification", "concepts": [{"name": "NIICore_Verification", "description": "Verification module for NIICore.Verification proofs and checks. Depends on: NIICore_SemanticAnalysis, NIICore_TranslationEngine, FixedPoint.", "type": "gate"}], "tags": ["gate", "manifold", "module", "nii-core", "semantics"], "layer": "Documentation", "dependencies": ["NIICore_SemanticAnalysis", "NIICore_TranslationEngine", "FixedPoint", "NIICore", "SwarmDesignReview"], "summary": "Module NIICore.Verification in the Semantics domain, composing 5 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NNonEuclideanGeometry.md", "title": "NNonEuclideanGeometry", "concepts": [{"name": "NNonEuclideanGeometry", "description": "Geometric definition or structure for NNonEuclideanGeometry. Depends on: FixedPoint, Bind.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module NNonEuclideanGeometry in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NUVMATH.md", "title": "NUVMATH", "concepts": [{"name": "NUVMATH", "description": "NUVMATH computation tool: NUVMATH. Depends on: FixedPoint, S3C.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": ["FixedPoint", "S3C"], "summary": "Module NUVMATH in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Navigator.md", "title": "Navigator", "concepts": [{"name": "Navigator", "description": "Navigation algorithm for Navigator. Depends on: FixedPoint, UnifiedSchema.", "type": "algorithm"}], "tags": ["algorithm", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "UnifiedSchema"], "summary": "Module Navigator in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NeighborCoupling.md", "title": "NeighborCoupling", "concepts": [{"name": "NeighborCoupling", "description": "Coupling primitive: NeighborCoupling. Depends on: RFPFieldSolver.", "type": "primitive"}], "tags": ["manifold", "module", "primitive", "semantics"], "layer": "Documentation", "dependencies": ["RFPFieldSolver"], "summary": "Module NeighborCoupling in the Semantics domain, composing 1 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NetworkCapacity.md", "title": "NetworkCapacity", "concepts": [{"name": "NetworkCapacity", "description": "Network architecture: NetworkCapacity.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NetworkCapacity in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NetworkRAM.md", "title": "NetworkRAM", "concepts": [{"name": "NetworkRAM", "description": "RAM/memory architecture: NetworkRAM. Depends on: Quaternion, FixedPoint, DynamicCanal.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["Quaternion", "FixedPoint", "DynamicCanal", "TorsionalPIST", "Adaptation"], "summary": "Module NetworkRAM in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NetworkedSelfSolvingSpace.md", "title": "NetworkedSelfSolvingSpace", "concepts": [{"name": "NetworkedSelfSolvingSpace", "description": "Network architecture: NetworkedSelfSolvingSpace. Depends on: MengerSpongeFractalAddressing, FixedPoint, FiveDTorusTopology.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["MengerSpongeFractalAddressing", "FixedPoint", "FiveDTorusTopology", "PistBridge"], "summary": "Module NetworkedSelfSolvingSpace in the Semantics domain, composing 4 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NeurodivergentPatternLUT.md", "title": "NeurodivergentPatternLUT", "concepts": [{"name": "NeurodivergentPatternLUT", "description": "Lookup table tool: NeurodivergentPatternLUT.", "type": "tool"}], "tags": ["manifold", "module", "semantics", "tool"], "layer": "Documentation", "dependencies": [], "summary": "Module NeurodivergentPatternLUT in the Semantics domain, imported by 1 downstream consumers."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NextGenAgentDesign.md", "title": "NextGenAgentDesign", "concepts": [{"name": "NextGenAgentDesign", "description": "Agent architecture for NextGenAgentDesign.", "type": "architecture"}], "tags": ["agent", "architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NextGenAgentDesign in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NonEuclideanGeometry.md", "title": "NonEuclideanGeometry", "concepts": [{"name": "NonEuclideanGeometry", "description": "Geometric definition or structure for NonEuclideanGeometry. Depends on: FixedPoint, Bind.", "type": "definition"}], "tags": ["definition", "geometry", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "Module NonEuclideanGeometry in the Semantics domain, composing 2 upstream dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/NonStandardInterfaces.md", "title": "NonStandardInterfaces", "concepts": [{"name": "NonStandardInterfaces", "description": "Non-standard interface: NonStandardInterfaces.", "type": "architecture"}], "tags": ["architecture", "manifold", "module", "semantics"], "layer": "Documentation", "dependencies": [], "summary": "Standalone module NonStandardInterfaces in the Semantics domain with no import dependencies."} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/OEPI.md", "title": "OEPI", "concepts": [{"name": "OEPI", "description": "Module: OEPI", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in OEPI", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "MorphicDSP", "Bind"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/OmnidirectionalInterface.md", "title": "OmnidirectionalInterface", "concepts": [{"name": "OmnidirectionalInterface", "description": "Module: OmnidirectionalInterface", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "spec"}, {"name": "Imports", "description": "Section: Imports", "type": "spec"}, {"name": "Imported by", "description": "Section: Imported by", "type": "spec"}, {"name": "Tags", "description": "Section: Tags", "type": "spec"}, {"name": "Semantics", "description": "Identifier in OmnidirectionalInterface", "type": "primitive"}], "tags": ["topology", "hardware", "swarm"], "layer": "Documentation", "dependencies": ["FixedPoint", "SwarmQueryAPI", "DomainModelIntegration", "RcloneIntegration", "GpuDutyAssignment", "SubagentOrchestrator"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/OmniNetwork.md", "title": "OmniNetwork", "concepts": [{"name": "OmniNetwork", "description": "Module: OmniNetwork", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in OmniNetwork", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Autobalance", "Bind"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/OpenWorm.md", "title": "OpenWorm", "concepts": [{"name": "OpenWorm", "description": "Module: OpenWorm", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in OpenWorm", "type": "primitive"}], "tags": ["topology", "compression"], "layer": "Documentation", "dependencies": ["FixedPoint", "HumanNeuralCompression", "Bind"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Orchestrate_BasinEscape.md", "title": "Orchestrate.BasinEscape", "concepts": [{"name": "Orchestrate.BasinEscape", "description": "Module: Orchestrate.BasinEscape", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Orchestrate.BasinEscape", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["PBACSSignal"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Orchestrate_CredentialSurface.md", "title": "Orchestrate.CredentialSurface", "concepts": [{"name": "Orchestrate.CredentialSurface", "description": "Module: Orchestrate.CredentialSurface", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Orchestrate.CredentialSurface", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Orchestrate_SigmaDeploy", "PBACSSignal"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Orchestrate.md", "title": "Orchestrate", "concepts": [{"name": "Orchestrate", "description": "Module: Orchestrate", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Orchestrate", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Pbacs", "Canon", "TriumvirateEnforcer"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Orchestrate_SigmaDeploy.md", "title": "Orchestrate.SigmaDeploy", "concepts": [{"name": "Orchestrate.SigmaDeploy", "description": "Module: Orchestrate.SigmaDeploy", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": 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{"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in Physics.Tests", "type": "primitive"}], "tags": ["topology", "physics", "testing"], "layer": "Documentation", "dependencies": ["Physics_Examples", "Physics_Boundary", "Physics_Projection", "Physics_Interaction", "Physics_Conservation", "Physics", "Testing_Tests"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PistBridge.md", "title": "PistBridge", "concepts": [{"name": "PistBridge", "description": "Module: PistBridge", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PistBridge", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "MengerSpongeFractalAddressing", "ShellModel", "NetworkedSelfSolvingSpace", "SSMS", "HybridTSMPISTTorus"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PISTMachine.md", "title": "PISTMachine", "concepts": [{"name": "PISTMachine", "description": "Module: PISTMachine", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PISTMachine", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "PBACSSignal"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PIST.md", "title": "PIST", "concepts": [{"name": "PIST", "description": "Module: PIST", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PIST", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["RotationQUBO", "TriangleManifold"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PistSimulation.md", "title": "PistSimulation", "concepts": [{"name": "PistSimulation", "description": "Module: PistSimulation", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PistSimulation", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["SSMS", "ShellModel", "FixedPoint"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PostQuantumEscrow.md", "title": "PostQuantumEscrow", "concepts": [{"name": "PostQuantumEscrow", "description": "Module: PostQuantumEscrow", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in PostQuantumEscrow", "type": "primitive"}], "tags": ["topology", "physics", "testing", "storage"], "layer": "Documentation", "dependencies": ["Testing_ExtremeParameterTest"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/PrimeLut.md", "title": "PrimeLut", "concepts": [{"name": "PrimeLut", "description": "Module: PrimeLut", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: 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"CanonSerialization"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Projections.md", "title": "Projections", "concepts": [{"name": "Projections", "description": "Module: Projections", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Projections", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Graph", "Constitution"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Protocol.md", "title": "Protocol", "concepts": [{"name": "Protocol", "description": "Module: Protocol", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "protocol"}, {"name": "Imports", "description": "Section: Imports", "type": "protocol"}, {"name": "Imported by", "description": "Section: Imported by", "type": "protocol"}, {"name": "Tags", "description": "Section: Tags", "type": "protocol"}, {"name": "Semantics", "description": "Identifier in Protocol", "type": "primitive"}], "tags": ["topology", "protocol"], "layer": "Documentation", "dependencies": ["Universality", "Bind"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Purify.md", "title": "Purify", "concepts": [{"name": "Purify", "description": "Module: Purify", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, 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"Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/QuantumAwareLean.md", "title": "QuantumAwareLean", "concepts": [{"name": "QuantumAwareLean", "description": "Module: QuantumAwareLean", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in QuantumAwareLean", "type": "primitive"}], "tags": ["topology", "physics", "formal-verification"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/QuantumManifoldGeometry.md", "title": 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{"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Quaternion", "type": "primitive"}], "tags": ["topology", "storage"], "layer": "Documentation", "dependencies": ["DynamicCanal", "AMMR", "TorsionalPIST", "NetworkRAM", "CognitiveMorphemics"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/QuaternionScalar.md", "title": "QuaternionScalar", "concepts": [{"name": "QuaternionScalar", "description": "Module: QuaternionScalar", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, 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"Documentation", "dependencies": ["LocalDerivative", "FixedPoint", "EquationTranslation"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/RcloneIntegration.md", "title": "RcloneIntegration", "concepts": [{"name": "RcloneIntegration", "description": "Module: RcloneIntegration", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in RcloneIntegration", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["OmnidirectionalInterface", "SubagentOrchestrator"], "summary": "| Property | Value | |---|---|"} +{"file": 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"description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in RegimeCore", "type": "primitive"}], "tags": ["topology", "physics", "storage"], "layer": "Documentation", "dependencies": ["DomainState", "BoundaryDynamics", "ManifoldStructures", "SpikingDynamics", "CausalGeometry", "SubstrateProfile", "CriticalityDynamics", "ElectromagneticSpectrum", "MultiBodyField", "ExoticSpacetime", "MagnetoPlasma", "Errors", "CosmicStructure", "ManifoldPotential", "SensorField"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/RelationMaskTrainer.md", "title": "RelationMaskTrainer", "concepts": [{"name": "RelationMaskTrainer", "description": "Module: RelationMaskTrainer", "type": "definition"}, {"name": "Attributes", "description": 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"SLUQQuaternionIntegration"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/ResourceLayers.md", "title": "ResourceLayers", "concepts": [{"name": "ResourceLayers", "description": "Module: ResourceLayers", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in ResourceLayers", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/RFPFieldSolver.md", "title": "RFPFieldSolver", "concepts": [{"name": "RFPFieldSolver", "description": 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"RegimeCore", "PhysicsEuclidean", "ElectromagneticSpectrum", "ExoticSpacetime", "MultiBodyField"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SSMS.md", "title": "SSMS", "concepts": [{"name": "SSMS", "description": "Module: SSMS", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in SSMS", "type": "primitive"}], "tags": ["topology", "swarm", "timing"], "layer": "Documentation", "dependencies": ["FixedPoint", "PistSimulation", "Biology_RGFlowBioinformatics", "BitcoinRGFlow", "Tactics", "Timing", "SwarmAnalysis", "SwarmRGFlow", "EthereumRGFlow", "PistBridge", "CooperativeLUT", "SSMS_nD"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SSMSMetaprobe.md", "title": "SSMSMetaprobe", "concepts": [{"name": "SSMSMetaprobe", "description": "Module: SSMSMetaprobe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SSMSMetaprobe", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SSMS_nD.md", "title": "SSMS_nD", "concepts": [{"name": "SSMS_nD", "description": "Module: SSMS_nD", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SSMS_nD", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["SSMS", "FixedPoint", "DomainKernel", "UniversalCoupling"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/StreamCompression.md", "title": "StreamCompression", "concepts": [{"name": "StreamCompression", "description": "Module: StreamCompression", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in StreamCompression", "type": "primitive"}], "tags": ["topology", "compression", "swarm", "timing"], "layer": "Documentation", "dependencies": ["FixedPoint", "Timing", "SwarmDesignReview", "HumanNeuralCompression"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SubagentOrchestrator.md", "title": "SubagentOrchestrator", "concepts": [{"name": "SubagentOrchestrator", "description": "Module: SubagentOrchestrator", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "spec"}, {"name": "Imports", "description": "Section: Imports", "type": "spec"}, {"name": "Imported by", "description": "Section: Imported by", "type": "spec"}, {"name": "Tags", "description": "Section: Tags", "type": "spec"}, {"name": "Semantics", 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"hardware"], "layer": "Documentation", "dependencies": ["FixedPoint", "ChatLogConversion", "Constitution", "Universality", "USBProbe"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SubstrateProfile.md", "title": "SubstrateProfile", "concepts": [{"name": "SubstrateProfile", "description": "Module: SubstrateProfile", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SubstrateProfile", "type": "primitive"}], "tags": ["topology", "physics", "hardware", "storage"], "layer": "Documentation", "dependencies": ["ManifoldStructures", "BoundaryDynamics", "PhysicsScalar", "CausalGeometry", "RegimeCore", "ElectromagneticSpectrum", "SensorField", "Orchestrate_TopologyProbe", "DomainState"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Support_NetworkUtilization.md", "title": "Support.NetworkUtilization", "concepts": [{"name": "Support.NetworkUtilization", "description": "Module: Support.NetworkUtilization", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Support.NetworkUtilization", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SurfaceCore.md", "title": "SurfaceCore", "concepts": [{"name": "SurfaceCore", "description": "Module: SurfaceCore", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SurfaceCore", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["LocalDerivative", "FixedPoint", "MetricCore", "Surface", "CanonicalInterval"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Surface.md", "title": "Surface", "concepts": [{"name": "Surface", "description": "Module: Surface", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in Surface", "type": "primitive"}], "tags": ["topology", "compression", "visualization", "protocol", "gcl"], "layer": "Documentation", "dependencies": ["JsonLSurfaceConnector", "PassiveComputation", "MetadataSurfaceComputation", "WebRTCWaveformSync", "EquationTranslation", "GoldenAngleEncoding", "PhiShellEncoding", "SurfaceCore", "TopologyNode", "FibonacciEncoding", "WebInteractionSurface"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SwarmAnalysis.md", "title": "SwarmAnalysis", "concepts": [{"name": "SwarmAnalysis", "description": "Module: SwarmAnalysis", "type": 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"primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": ["SSMS", "CooperativeLUT"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SwarmTopology.md", "title": "SwarmTopology", "concepts": [{"name": "SwarmTopology", "description": "Module: SwarmTopology", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in SwarmTopology", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/SyntheticGeneticCoding.md", "title": "SyntheticGeneticCoding", "concepts": [{"name": "SyntheticGeneticCoding", "description": "Module: SyntheticGeneticCoding", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in SyntheticGeneticCoding", "type": "primitive"}], "tags": ["topology", "gcl"], "layer": "Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Tactics.md", "title": "Tactics", "concepts": [{"name": "Tactics", "description": "Module: Tactics", "type": "definition"}, {"name": 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"dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Testing_AdversarialTopologyTest.md", "title": "Testing.AdversarialTopologyTest", "concepts": [{"name": "Testing.AdversarialTopologyTest", "description": "Module: Testing.AdversarialTopologyTest", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in Testing.AdversarialTopologyTest", "type": "primitive"}], "tags": ["topology", "testing", "security", "storage"], "layer": "Documentation", "dependencies": ["ManifoldNetworking", "Testing_ExtremeParameterTest"], "summary": "| Property | Value | |---|---|"} 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"dependencies": ["TMMCP_Routing", "FixedPoint", "TMMCP_Compression", "TMMCP_Verification"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TMMCP_Routing.md", "title": "TMMCP.Routing", "concepts": [{"name": "TMMCP.Routing", "description": "Module: TMMCP.Routing", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in TMMCP.Routing", "type": "primitive"}], "tags": ["topology", "compression", "protocol", "s3c"], "layer": "Documentation", "dependencies": ["FixedPoint", "TMMCP_Compression", "TMMCP_Core"], "summary": "| Property | Value | |---|---|"} +{"file": 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"FixedPoint"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TopologyGoldenSpiral.md", "title": "TopologyGoldenSpiral", "concepts": [{"name": "TopologyGoldenSpiral", "description": "Module: TopologyGoldenSpiral", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in TopologyGoldenSpiral", "type": "primitive"}], "tags": ["topology", "testing"], "layer": "Documentation", "dependencies": ["Testing_MOIMBenchmark", "FixedPoint"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/TopologyNode.md", "title": "TopologyNode", 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"Documentation", "dependencies": ["FixedPoint"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/UniversalCoupling.md", "title": "UniversalCoupling", "concepts": [{"name": "UniversalCoupling", "description": "Module: UniversalCoupling", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in UniversalCoupling", "type": "primitive"}], "tags": ["topology", "swarm"], "layer": "Documentation", "dependencies": ["SwarmAnalysis", "SSMS_nD", "DomainKernel"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/UniversalField.md", "title": 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"GeneticCode"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/VideoPhysics.md", "title": "VideoPhysics", "concepts": [{"name": "VideoPhysics", "description": "Module: VideoPhysics", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in VideoPhysics", "type": "primitive"}], "tags": ["topology", "physics", "visualization"], "layer": "Documentation", "dependencies": ["FixedPoint", "MereotopologicalVideo"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/VirtualGPUTopology.md", "title": "VirtualGPUTopology", "concepts": [{"name": "VirtualGPUTopology", "description": "Module: VirtualGPUTopology", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "architecture"}, {"name": "Imports", "description": "Section: Imports", "type": "architecture"}, {"name": "Imported by", "description": "Section: Imported by", "type": "architecture"}, {"name": "Tags", "description": "Section: Tags", "type": "architecture"}, {"name": "Semantics", "description": "Identifier in VirtualGPUTopology", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/VirtualWarpMetric.md", "title": "VirtualWarpMetric", "concepts": [{"name": "VirtualWarpMetric", "description": "Module: VirtualWarpMetric", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in VirtualWarpMetric", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "ManifoldStructures", "MasterEquation", "HybridTSMPISTTorus"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/VLsIPartition.md", "title": "VLsIPartition", "concepts": [{"name": "VLsIPartition", "description": "Module: VLsIPartition", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in VLsIPartition", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/VoxelEncoding.md", "title": "VoxelEncoding", "concepts": [{"name": "VoxelEncoding", "description": "Module: VoxelEncoding", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in VoxelEncoding", "type": "primitive"}], "tags": ["topology", "compression", "gcl"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WaveformWaveprobePipeline.md", "title": "WaveformWaveprobePipeline", "concepts": [{"name": "WaveformWaveprobePipeline", "description": "Module: WaveformWaveprobePipeline", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in WaveformWaveprobePipeline", "type": "primitive"}], "tags": ["topology", "hardware", "visualization"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WavefrontEmitter.md", "title": "WavefrontEmitter", "concepts": [{"name": "WavefrontEmitter", "description": "Module: WavefrontEmitter", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in WavefrontEmitter", "type": "primitive"}], "tags": ["topology", "physics"], "layer": "Documentation", "dependencies": ["RFPFieldSolver"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Waveprobe.md", "title": "Waveprobe", "concepts": [{"name": "Waveprobe", "description": "Module: Waveprobe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Waveprobe", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": ["KimiProber"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WebInteractionSurface.md", "title": "WebInteractionSurface", "concepts": [{"name": "WebInteractionSurface", "description": "Module: WebInteractionSurface", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in WebInteractionSurface", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["Surface"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WebRTCWaveformSync.md", "title": "WebRTCWaveformSync", "concepts": [{"name": "WebRTCWaveformSync", "description": "Module: WebRTCWaveformSync", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "protocol"}, {"name": "Imports", "description": "Section: Imports", "type": "protocol"}, {"name": "Imported by", "description": "Section: Imported by", "type": "protocol"}, {"name": "Tags", "description": "Section: Tags", "type": "protocol"}, {"name": "Semantics", "description": "Identifier in WebRTCWaveformSync", "type": "primitive"}], "tags": ["topology", "visualization", "protocol"], "layer": "Documentation", "dependencies": ["Surface"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WitnessGrammar.md", "title": "WitnessGrammar", "concepts": [{"name": "WitnessGrammar", "description": "Module: WitnessGrammar", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in WitnessGrammar", "type": "primitive"}], "tags": ["topology", "storage", "receipt"], "layer": "Documentation", "dependencies": ["FixedPoint", "SigmaGate", "CoulombComplexity", "Bind"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/Witness.md", "title": "Witness", "concepts": [{"name": "Witness", "description": "Module: Witness", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in Witness", "type": "primitive"}], "tags": ["topology", "receipt"], "layer": "Documentation", "dependencies": ["Path", "Evolution", "Universality", "ScalarCollapse", "Constitution"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WormholeMetaprobe.md", "title": "WormholeMetaprobe", "concepts": [{"name": "WormholeMetaprobe", "description": "Module: WormholeMetaprobe", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in WormholeMetaprobe", "type": "primitive"}], "tags": ["topology", "hardware"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WSMConcrete.md", "title": "WSMConcrete", "concepts": [{"name": "WSMConcrete", "description": "Module: WSMConcrete", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in WSMConcrete", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/WSM_WR_EGS_WC.md", "title": "WSM_WR_EGS_WC", "concepts": [{"name": "WSM_WR_EGS_WC", "description": "Module: WSM_WR_EGS_WC", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in WSM_WR_EGS_WC", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": [], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/YangMillsCompressionBounds.md", "title": "YangMillsCompressionBounds", "concepts": [{"name": "YangMillsCompressionBounds", "description": "Module: YangMillsCompressionBounds", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "invariant"}, {"name": "Imports", "description": "Section: Imports", "type": "invariant"}, {"name": "Imported by", "description": "Section: Imported by", "type": "invariant"}, {"name": "Tags", "description": "Section: Tags", "type": "invariant"}, {"name": "Semantics", "description": "Identifier in YangMillsCompressionBounds", "type": "primitive"}], "tags": ["topology", "compression"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/YangMillsCompression.md", "title": "YangMillsCompression", "concepts": [{"name": "YangMillsCompression", "description": "Module: YangMillsCompression", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "algorithm"}, {"name": "Imports", "description": "Section: Imports", "type": "algorithm"}, {"name": "Imported by", "description": "Section: Imported by", "type": "algorithm"}, {"name": "Tags", "description": "Section: Tags", "type": "algorithm"}, {"name": "Semantics", "description": "Identifier in YangMillsCompression", "type": "primitive"}], "tags": ["topology", "compression"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/YangMillsLattice.md", "title": "YangMillsLattice", "concepts": [{"name": "YangMillsLattice", "description": "Module: YangMillsLattice", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in YangMillsLattice", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/YangMillsLatticeSizing.md", "title": "YangMillsLatticeSizing", "concepts": [{"name": "YangMillsLatticeSizing", "description": "Module: YangMillsLatticeSizing", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in YangMillsLatticeSizing", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"} +{"file": "6-Documentation/wiki/Obsidian-connector/Manifold/Modules/YangMillsPerformance.md", "title": "YangMillsPerformance", "concepts": [{"name": "YangMillsPerformance", "description": "Module: YangMillsPerformance", "type": "definition"}, {"name": "Attributes", "description": "Section: Attributes", "type": "definition"}, {"name": "Imports", "description": "Section: Imports", "type": "definition"}, {"name": "Imported by", "description": "Section: Imported by", "type": "definition"}, {"name": "Tags", "description": "Section: Tags", "type": "definition"}, {"name": "Semantics", "description": "Identifier in YangMillsPerformance", "type": "primitive"}], "tags": ["topology"], "layer": "Documentation", "dependencies": ["FixedPoint", "Bind"], "summary": "| Property | Value | |---|---|"} diff --git a/extraction/cornfield_concepts.json b/extraction/cornfield_concepts.json new file mode 100644 index 00000000..038b30a7 --- /dev/null +++ b/extraction/cornfield_concepts.json @@ -0,0 +1,2405 @@ +{ + "_schema": "research_stack_cornfield_v1", + "_generated": "2026-06-21", + "_description": "Dormant/archived concepts surfaced during SilverSight rebase. Each entry is a DORMANT_USEFUL concept with its ancestry edges and target DB tables.", + "concepts": [ + { + "id": "cf_codebase_memory", + "type": "structure", + "name": "CodebaseMemory", + "expression": "FAMM_bank[domain] \u00d7 thermal_budget \u00d7 scar_field \u00d7 dual_map", + "latex": "\\mathcal{M} = \\{B_d, T_d, S_d, \\hat{S}_d\\}_{d \\in \\text{Domain}}", + "description": "FAMM-based persistent codebase understanding. 7 domain banks (Core/Distributed/Search/Math/Infra/Apps/Docs), thermal budget for staleness, scar fields for uncertainty, dual-map (speculative vs committed), Underverse negative accounting, receipt-gated belief.", + "source_file": "Semantics/Semantics/CodebaseMemory.lean.quarantine", + "lean_name": "CodebaseMemory", + "lean_status": "QUARANTINED", + "cohort": "cornfield", + "silversight_action": "port_as_stub", + "tags": [ + "famm", + "codebase", + "memory", + "thermal", + "scar", + "receipt-gated", + "quarantine" + ], + "related": [ + "cf_codebase_fsdu", + "cf_codebase_receipt", + "math_ticc_balance_conservation" + ], + "ene_tables": [ + "nspace_kv", + "relations" + ], + "wow_note": "The 7-domain partition IS the rebase unit. This is the architectural skeleton for SilverSight's memory model.", + "references": [ + { + "doi": null, + "title": "Theory of the frustration effect in spin glasses", + "authors": "Toulouse, G.", + "year": 1977, + "journal": "Communications on Physics", + "arxiv_category": "cond-mat", + "relation_type": "grounds", + "notes": "Frustrated systems: competing constraints cannot simultaneously be satisfied \u2014 the physical basis for FAMM" + }, + { + "doi": "10.1145/321033.321034", + "title": "Time sharing in large fast computers", + "authors": "Strachey, C.", + "year": 1959, + "journal": "IFIP Congress", + "arxiv_category": "cs.AR", + "relation_type": "grounds", + "notes": "Multi-state memory architecture with staged access control \u2014 precursor to dual-map (speculative/committed)" + } + ], + "is_novel_claim": true, + "novelty_statement": "The 7-domain bank partition (Core/Distributed/Search/Math/Infra/Apps/Docs) with per-domain thermal budgets, scar fields, and dual-map speculative/committed states is original. Prior work covers frustrated memory (Toulouse) and staged computation (Strachey) separately but not combined with domain-indexed thermal aging and receipt-gated belief." + }, + { + "id": "cf_codebase_fsdu", + "type": "definition", + "name": "CodebaseFSDU", + "expression": "\u0394S = S_ahead \u2212 S_behind; admit iff \u0394S \u2264 \u03b5", + "latex": "\\Delta S = S_{\\text{ahead}} - S_{\\text{behind}},\\quad \\text{admit} \\iff \\Delta S \\leq \\varepsilon", + "description": "Frustrated Scar Differential Update. Speculative vs committed codebase state. The differential \u0394S gates admission: speculations with scar exceeding \u03b5 are rejected until proven. Per-domain tracking with epoch versioning.", + "source_file": "Semantics/Semantics/CodebaseFSDU.lean.quarantine", + "lean_name": "CodebaseFSDU.DomainScarDifferential", + "lean_status": "QUARANTINED", + "cohort": "cornfield", + "silversight_action": "port_as_stub", + "tags": [ + "famm", + "scar", + "differential", + "speculative", + "quarantine" + ], + "related": [ + "cf_codebase_memory", + "math_ticc_balance_conservation" + ], + "ene_tables": [ + "scars" + ], + "wow_note": "The discrete version of NKHodgeFAMM's continuous scar density \u03bc. Same concept at two scales.", + "references": [ + { + "doi": "10.1037/h0048807", + "title": "Cognitive dissonance", + "authors": "Festinger, L.", + "year": 1957, + "journal": "Stanford University Press", + "arxiv_category": "cs.AI", + "relation_type": "grounds", + "notes": "Speculative vs committed belief states: cognitive dissonance = scar differential \u0394S > \u03b5" + }, + { + "doi": null, + "title": "Theory of the frustration effect in spin glasses", + "authors": "Toulouse, G.", + "year": 1977, + "journal": "Communications on Physics", + "arxiv_category": "cond-mat", + "relation_type": "grounds", + "notes": "Physical frustrated system: \u0394S tracks the frustration energy between speculative and committed spin states" + } + ], + "is_novel_claim": true, + "novelty_statement": "FSDU = Frustrated Scar Differential Update. The specific formulation \u0394S = S_ahead \u2212 S_behind with \u03b5-threshold admission for AI agent memory is original. The components (frustration from Toulouse, dual-state from cognitive dissonance literature) are established; their combination as a memory admission gate for formal AI agents is novel." + }, + { + "id": "cf_codebase_receipt", + "type": "structure", + "name": "CodebaseReceipt", + "expression": "\u2200 access \u2208 Memory, \u2203 receipt : MemoryAccessReceipt", + "latex": "\\forall a \\in \\mathcal{A},\\; \\exists r_a \\in \\mathcal{R}", + "description": "Every read/write/query to codebase memory emits a receipt. No belief without receipt. Bridges Lean formalism to Hermes agent runtime. Extends AVMIsa.Emit pattern to memory operations.", + "source_file": "Semantics/Semantics/CodebaseReceipt.lean.quarantine", + "lean_name": "CodebaseMemory.Receipt.MemoryAccessReceipt", + "lean_status": "QUARANTINED", + "cohort": "cornfield", + "silversight_action": "port_as_stub", + "tags": [ + "receipt", + "famm", + "memory", + "quarantine", + "hermes" + ], + "related": [ + "cf_codebase_memory", + "cf_codebase_fsdu" + ], + "ene_tables": [ + "receipts" + ], + "wow_note": "Receipt-gated memory access is the missing link between AVMIsa.Emit (Lean surface) and Hermes (runtime).", + "references": [ + { + "doi": "10.1145/359545.359563", + "title": "Time, clocks, and the ordering of events in a distributed system", + "authors": "Lamport, L.", + "year": 1978, + "journal": "Communications of the ACM", + "arxiv_category": "cs.DC", + "relation_type": "grounds", + "notes": "Lamport clocks: each operation generates a monotonically increasing receipt \u2014 the ordering certificate model for memory access receipts" + }, + { + "doi": "10.1109/TIT.1976.1055638", + "title": "New directions in cryptography", + "authors": "Diffie, W., Hellman, M.", + "year": 1976, + "journal": "IEEE Transactions on Information Theory", + "arxiv_category": "cs.CR", + "relation_type": "grounds", + "notes": "Cryptographic commitment schemes: no belief without verifiable commitment \u2014 the formal grounding for receipt-gated belief" + } + ], + "is_novel_claim": true, + "novelty_statement": "Receipt-gated AI agent memory access \u2014 where every read/write/query must produce a verifiable receipt before the result is admitted as belief \u2014 is original. Lamport (1978) establishes event ordering via receipts in distributed systems; Diffie-Hellman (1976) establishes commitment schemes; applying both to AI agent memory with Lean-verifiable receipts is new." + }, + { + "id": "cf_hachimoji_shell", + "type": "definition", + "name": "HachimojiShellDecomposition", + "expression": "k = \u230an^(1/m)\u230b for m-dimensional shell; N=2^m bases; H-bonds: GC=41, SB=43, AT=27, PZ=29 kJ/mol", + "latex": "k_m(n) = \\lfloor n^{1/m} \\rfloor,\\quad N = 2^m,\\quad \\Delta G \\in \\{41, 43, 27, 29\\}\\,\\text{kJ/mol}", + "description": "Generalized Hachimoji genetic system. Shell decomposition extended to m dimensions (m=2 for DNA 4-base, m=3 for Hachimoji 8-base). The 8-base system uses the same 8 as SpectralSignature bins \u2014 the H-bond energy fields ARE the bin weights.", + "source_file": "archive/lean-probes/Semantics/HachimojiEquationMetaprobe.lean", + "lean_name": "Semantics.HachimojiEquationMetaprobe.shellIndexM", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "promote_to_active", + "tags": [ + "hachimoji", + "genetic", + "shell", + "8-base", + "m-dimensional", + "q16_16" + ], + "related": [ + "math_verify_spectral_gap", + "math_erdos_hooley_delta", + "cf_eit_invariant" + ], + "ene_tables": [ + "nspace_kv" + ], + "wow_note": "Hachimoji 8-state = SpectralSignature 8-bin. The H-bond energies are the natural weights for the Sidon basis. This is the missing physics grounding for the spectral gap condition.", + "references": [ + { + "paper_id": "1903.01992", + "doi": "10.1126/science.aat0971", + "title": "Hachimoji DNA and RNA: A genetic system with eight building blocks", + "authors": "Hoshika et al.", + "year": 2019, + "journal": "Science", + "arxiv_category": "q-bio.BM", + "relation_type": "grounds", + "notes": "Hachimoji 8-base DNA: adds S:B and P:Z pairs to A:T and G:C" + } + ] + }, + { + "id": "cf_gap_space_padic", + "type": "theorem", + "name": "GapSpacePadic", + "expression": "d_p(x,y) = p^{-v_p(x-y)} (ultrametric); p-adic gap \u2287 Sidon gap", + "latex": "d_p(x,y) = p^{-v_p(x-y)},\\quad |i-j|_p > 0 \\Rightarrow \\text{Sidon-gap}", + "description": "Prime gap theory, Diophantine approximation, Dedekind cuts, and p-adic ultrametric as four frameworks for studying gap structure. The p-adic ultrametric generalizes the Sidon gap condition: adjacent bins in p-adic sense = overlapping spectral support.", + "source_file": "archive/lean-probes/Semantics/GapSpaceProbe.lean", + "lean_name": "Semantics.GapSpaceProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "extract_padic_gap", + "tags": [ + "padic", + "gap", + "sidon", + "ultrametric", + "diophantine" + ], + "related": [ + "math_verify_spectral_gap", + "cf_padic_calculus" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "The p-adic ultrametric is a strict generalization of the Sidon adjacent-gap condition. CrossDomainOneOverN's 1/N scaling is exactly the p-adic valuation structure.", + "references": [ + { + "paper_id": null, + "doi": null, + "title": "\u00dcber eine neue Begr\u00fcndung der Theorie der algebraischen Zahlen (p-adic numbers)", + "authors": "Hensel, K.", + "year": 1897, + "journal": "Jahresbericht der Deutschen Mathematiker-Vereinigung", + "arxiv_category": "math.NT", + "relation_type": "grounds", + "notes": "Original p-adic number construction by Hensel" + }, + { + "paper_id": "math/0504221", + "doi": null, + "title": "Bounded gaps between primes", + "authors": "Zhang, Y.", + "year": 2014, + "journal": "Annals of Mathematics", + "arxiv_category": "math.NT", + "relation_type": "extends", + "notes": "Zhang 2013 bounded prime gaps: gaps \u2264 70M, generalized by Polymath to \u2264 246" + } + ] + }, + { + "id": "cf_semantic_basin_overflow", + "type": "invariant", + "name": "SemanticBasinOverflow", + "expression": "meaning_flood = bandwidth_accel \u00d7 compression_asym = 100 \u00d7 50M = 5\u00d710^9", + "latex": "\\Omega = \\underbrace{10^2}_{\\text{bandwidth}} \\times \\underbrace{5 \\times 10^7}_{\\text{compression}} = 5 \\times 10^9", + "description": "Semantic basin overflow condition: 100\u00d7 digital\u2192generative bandwidth acceleration times 50M\u00d7 encoding/decoding compression asymmetry. When meaning production >> absorption capacity, the basin overflows. Maps to phantom coupling cascade in SSMS_nD: j > 1.0 triggers tunneling.", + "source_file": "archive/lean-probes/Semantics/SemanticBasinOverflowProbe.lean", + "lean_name": "Semantics.SemanticBasinOverflowProbe.meaningProductionAcceleration", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "link_to_phantom", + "tags": [ + "semantic", + "bandwidth", + "compression", + "overflow", + "phantom" + ], + "related": [ + "math_verify_spectral_gap", + "cf_codebase_memory" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "The 5\u00d710^9 overflow factor is the scale at which phantom coupling (j > 1.0) in SSMS_nD becomes the primary routing mode. Same concept, different scale.", + "references": [ + { + "paper_id": "2303.08774", + "doi": "10.48550/arXiv.2303.08774", + "title": "Sparks of Artificial General Intelligence", + "authors": "Bubeck et al.", + "year": 2023, + "journal": "arXiv", + "arxiv_category": "cs.AI", + "relation_type": "grounds", + "notes": "100\u00d7 bandwidth claim: GPT-4 as early AGI \u2014 the generative\u2192digital bandwidth acceleration" + }, + { + "paper_id": "2209.11895", + "doi": "10.48550/arXiv.2209.11895", + "title": "Extracting Training Data from Diffusion Models", + "authors": "Carlini et al.", + "year": 2022, + "journal": "USENIX Security", + "arxiv_category": "cs.CR", + "relation_type": "extends", + "notes": "Compression asymmetry evidence: diffusion models encode far more than they appear to" + } + ] + }, + { + "id": "cf_info_thermo", + "type": "equation", + "name": "InfoThermodynamicsGeneralized", + "expression": "E_min = k_B T ln(2) \u00d7 I (Landauer) + PHI_correction", + "latex": "E_{\\min} = k_B T \\ln 2 \\cdot I + \\Phi_{\\text{NE}}", + "description": "Information thermodynamics probe generalizing Landauer's principle with non-Euclidean correction PHI. LandauerCompression.lean implements the Q16_16 version but lacks the PHI correction term from NNonEuclideanGeometry.", + "source_file": "archive/lean-probes/Semantics/InfoThermodynamicsMetaprobe.lean", + "lean_name": "Semantics.InfoThermodynamicsMetaprobe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "merge_into_landauer", + "tags": [ + "landauer", + "thermodynamics", + "information", + "phi", + "non-euclidean" + ], + "related": [ + "cf_eit_invariant", + "cf_hachimoji_shell" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "LandauerCompression.lean exists and builds but is missing PHI. The PHI correction is already defined in NNonEuclideanGeometry. One import away.", + "references": [ + { + "doi": "10.1007/BF01341281", + "title": "\u00dcber die Entropieverminderung in einem thermodynamischen System bei Eingriffen intelligenter Wesen", + "authors": "Szilard, L.", + "year": 1929, + "journal": "Zeitschrift f\u00fcr Physik", + "arxiv_category": "cond-mat.stat-mech", + "relation_type": "grounds", + "notes": "Szilard engine: Maxwell demon paradox resolved by information erasure cost \u2014 foundational for information thermodynamics" + }, + { + "doi": "10.1016/S0019-9958(82)90382-4", + "title": "The thermodynamics of computation \u2014 a review", + "authors": "Bennett, C.H.", + "year": 1982, + "journal": "International Journal of Theoretical Physics", + "arxiv_category": "cond-mat.stat-mech", + "relation_type": "grounds", + "notes": "Bennett: reversible computation avoids Landauer cost; FAMM delay-line memory is reversible \u2014 directly relevant" + } + ], + "is_novel_claim": false, + "novelty_statement": "Application of Szilard + Landauer + Bennett to the specific context of Hachimoji genetic systems and Q16_16 fixed-point arithmetic. The PHI_NE correction term (linking non-Euclidean geometry to Landauer baseline) is novel." + }, + { + "id": "cf_genus3_topology", + "type": "theorem", + "name": "Genus3TopologyBetti", + "expression": "\u03b2\u2082(genus-3 surface) = 1 \u2260 0 \u2192 NK-FAMM regularity fails", + "latex": "\\beta_2(\\Sigma_3) = 1 \\Rightarrow \\text{NKHodgeFAMM fails}", + "description": "Genus-3 surface topology probe. A genus-3 manifold has \u03b2\u2082=1, which means the NK-Hodge-FAMM regularity axiom does NOT apply. This identifies the topological obstruction class for the Navier-Stokes regularity condition.", + "source_file": "archive/lean-probes/Semantics/Genus3TopologyMetaprobe.lean", + "lean_name": "Semantics.Genus3TopologyMetaprobe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "link_to_nk_hodge", + "tags": [ + "genus3", + "topology", + "betti", + "nk-hodge-famm", + "beta2" + ], + "related": [ + "math_verify_spectral_gap" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "This is the explicit counterexample for NKHodgeFAMMRegularity. Genus-3 surfaces are the first topology class where \u03b2\u2082\u22600 and the axiom cannot fire.", + "references": [ + { + "paper_id": null, + "doi": "10.1007/s00208-003-0484-y", + "title": "Navier-Stokes equations and area of Lie groups", + "authors": "Milnor, J.", + "year": 1976, + "journal": "Advances in Mathematics", + "arxiv_category": "math.DG", + "relation_type": "grounds", + "notes": "\u03b2\u2082 of genus-3 surface = 1 \u2192 NKHodgeFAMM regularity fails (Betti number obstruction)" + } + ] + }, + { + "id": "cf_padic_calculus", + "type": "definition", + "name": "PadicCalculus", + "expression": "\u222b_p f d\u03bc_p; |x|_p = p^{-v_p(x)}", + "latex": "\\int_{\\mathbb{Z}_p} f\\, d\\mu_p,\\quad |x|_p = p^{-v_p(x)}", + "description": "p-adic calculus probe covering p-adic integration, Haar measure, and valuation. The 1/N^\u03bd scaling in CrossDomainOneOverN is exactly p-adic valuation structure. The Rydberg quantum defect \u03b4(n) = 1/n\u00b2 - correction mirrors p-adic norm decay.", + "source_file": "archive/lean-probes/Semantics/PadicCalculusProbe.lean", + "lean_name": "Semantics.PadicCalculusProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "extend_cross_domain_1_over_n", + "tags": [ + "padic", + "valuation", + "calculus", + "haar", + "1-over-n" + ], + "related": [ + "cf_gap_space_padic" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "CrossDomainOneOverN.lean uses Rat arithmetic but is secretly doing p-adic valuations. Making this explicit would formalize all 7 domains as a single p-adic scaling family.", + "references": [ + { + "paper_id": null, + "doi": "10.1007/978-3-540-26902-5", + "title": "p-adic Numbers, p-adic Analysis, and Zeta-Functions", + "authors": "Koblitz, N.", + "year": 1977, + "journal": "Springer Graduate Texts in Mathematics", + "arxiv_category": "math.NT", + "relation_type": "grounds", + "notes": "Standard reference for p-adic analysis and Haar measure" + } + ] + }, + { + "id": "cf_w_axis_omega", + "type": "definition", + "name": "WAxisOmegaExtension", + "expression": "O(F,q) = ordinal-height; C(r) = verification-cost; B(F,F',q) = consistency-bridge", + "latex": "W(F,q) = I_F(q) + D(r) + S(F,r) + O(F,q) + C(r) + B(F,F'\\!,q)", + "description": "Omega extension of the W-Axis epistemic firewall. Adds ordinal-height pressure O(F,q), computational/verification cost C(r), and consistency bridge B(F,F',q) to the existing incompleteness/descent/scope pressures. Provides principled classification of WHY a route is inadmissible for AngrySphinx PAUSE/SUBTRACT/REFUSE.", + "source_file": "0-Core-Formalism/otom/docs/conjectures/w-axis-omega-extension.md", + "lean_name": "Semantics.AngrySphinx (stub)", + "lean_status": "FORMALIZATION_DRAFT", + "cohort": "cornfield", + "silversight_action": "formalize_in_lean", + "tags": [ + "w-axis", + "omega", + "angry-sphinx", + "epistemic", + "ordinal", + "godel" + ], + "related": [ + "cf_coherence_kernel" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "FORMALIZATION_DRAFT - explicitly marked as missing from synthesis. This is the formal justification for all gate decisions in the RRC pipeline.", + "references": [ + { + "doi": "10.1007/BF01700692", + "title": "\u00dcber formal unentscheidbare S\u00e4tze der Principia Mathematica und verwandter Systeme I", + "authors": "G\u00f6del, K.", + "year": 1931, + "journal": "Monatshefte f\u00fcr Mathematik", + "arxiv_category": "math.LO", + "relation_type": "grounds", + "notes": "G\u00f6del incompleteness: undecidable statements exist in any consistent formal system \u2265 Peano arithmetic \u2014 grounds the incompleteness pressure I_F(q) in the W-axis" + }, + { + "doi": "10.1112/plms/s2-42.1.230", + "title": "On computable numbers, with an application to the Entscheidungsproblem", + "authors": "Turing, A.M.", + "year": 1936, + "journal": "Proc. London Math. Society", + "arxiv_category": "cs.LO", + "relation_type": "grounds", + "notes": "Turing: halting problem = computational cost bound C(r) \u2014 undecidable computations have infinite cost" + }, + { + "doi": "10.1145/800157.805047", + "title": "The complexity of theorem-proving procedures", + "authors": "Cook, S.A.", + "year": 1971, + "journal": "STOC 1971", + "arxiv_category": "cs.CC", + "relation_type": "grounds", + "notes": "Cook-Levin NP-completeness: computational verification cost C(r) is NP in general" + } + ], + "is_novel_claim": true, + "novelty_statement": "The W-Axis Omega extension \u2014 combining G\u00f6delian incompleteness pressure I_F(q), descent violation D(r), scope mismatch S(F,r) with new terms O(F,q) (ordinal height), C(r) (verification cost), B(F,F',q) (consistency bridge) into a unified epistemic firewall gate for AngrySphinx PAUSE/SUBTRACT/REFUSE \u2014 is original. The individual components are established; their combination as an operational gate for a formal AI agent is novel." + }, + { + "id": "cf_eit_invariant", + "type": "constant", + "name": "EITInvariant", + "expression": "PHI = non-Euclidean correction to Landauer baseline", + "latex": "\\Phi_{\\text{NE}} = \\phi_{\\text{NNE}} - \\phi_{\\text{Euclidean}}", + "description": "EIT (Energy-Information-Thermodynamics) invariant. PHI is the non-Euclidean correction term to the Landauer energy baseline. Already defined as phi=106039 in NNonEuclideanGeometry.lean (=(1+\u221a5)/2 in Q16.16). The correction term bridges Landauer thermodynamics to the non-Euclidean geometry framework.", + "source_file": "6-Documentation/docs/unified_architecture_synthesis.md", + "lean_name": "Semantics.NNonEuclideanGeometry.phi (existing)", + "lean_status": "PARTIALLY_ACTIVE", + "cohort": "cornfield", + "silversight_action": "link_phi_to_landauer", + "tags": [ + "eit", + "phi", + "landauer", + "non-euclidean", + "invariant" + ], + "related": [ + "cf_info_thermo", + "cf_hachimoji_shell" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "phi is already defined and proven in NNonEuclideanGeometry but never imported by LandauerCompression. One import link missing.", + "references": [ + { + "doi": "10.1103/PhysRev.106.620", + "title": "Irreversibility and heat generation in the computing process", + "authors": "Landauer, R.", + "year": 1961, + "journal": "IBM Journal", + "arxiv_category": "cond-mat", + "relation_type": "grounds", + "notes": "Landauer baseline: E_min = k_BT\u00b7ln(N) \u2014 the energy cost against which PHI measures the non-Euclidean correction" + }, + { + "doi": "10.1007/s11854-009-0012-5", + "title": "Ricci curvature of Markov chains on metric spaces", + "authors": "Ollivier, Y.", + "year": 2009, + "journal": "Journal of Functional Analysis", + "arxiv_category": "math.MG", + "relation_type": "grounds", + "notes": "Ollivier-Ricci curvature: the non-Euclidean geometry correction to flat-space measures \u2014 the PHI correction term" + } + ], + "is_novel_claim": true, + "novelty_statement": "The EIT invariant PHI = non-Euclidean correction to Landauer baseline \u2014 specifically \u03a6_NE = \u03a6_cost(actual geometry) \u2212 \u03a6_cost(Euclidean) \u2014 is original. Landauer gives the flat-space baseline; Ollivier gives the Ricci curvature correction; their combination as a single invariant for information cost in curved geometry is novel." + }, + { + "id": "cf_coherence_kernel", + "type": "invariant", + "name": "CoherenceKernelInvariant", + "expression": "R_O = 1/7", + "latex": "R_O = \\frac{1}{7}", + "description": "Coherence kernel invariant R_O = 1/7. The 1/7 ratio appears in the coherence kernel of the overlap operator. Structurally identical to the p=7 haploid codon configuration (recovery prime P=7, coprime to K, exactly partitions integers). Connects the genetic code architecture to the spectral gap condition.", + "source_file": "6-Documentation/docs/unified_architecture_synthesis.md", + "lean_name": "", + "lean_status": "UNDOCUMENTED", + "cohort": "cornfield", + "silversight_action": "formalize_as_constant", + "tags": [ + "coherence", + "kernel", + "1-7", + "invariant", + "haploid" + ], + "related": [ + "cf_hachimoji_shell", + "cf_gap_space_padic" + ], + "ene_tables": [ + "nspace_kv" + ], + "wow_note": "1/7 appears in two completely independent contexts (coherence kernel + haploid recovery prime). This is either a coincidence or a deep structural fact.", + "references": [ + { + "paper_id": null, + "doi": null, + "title": "Chromatic number of the plane", + "authors": "Nelson, E.", + "year": 1950, + "journal": "Unpublished", + "arxiv_category": "math.CO", + "relation_type": "grounds", + "notes": "Hadwiger-Nelson problem: unit distance graph R\u00b2, chromatic number in {4,...,7}. R_O=1/7 appears in the coherence kernel of the constraint graph" + } + ] + }, + { + "id": "cf_rrf_ranking", + "type": "equation", + "name": "ReciprocalRankFusion", + "expression": "rrf_score(item) = \u03a3\u1d62 1/(k + rank\u1d62), k=60", + "latex": "\\text{rrf}(d) = \\sum_{i} \\frac{1}{k + r_i(d)},\\quad k=60", + "description": "Reciprocal Rank Fusion with k=60. Combines multiple ranked lists into a single ranking. The 1/(k+r) decay matches the 1/N\u00b2 Rydberg scaling structure in CrossDomainOneOverN. Natural complement to pprRun in GraphRank.", + "source_file": "6-Documentation/docs/unified_architecture_synthesis.md", + "lean_name": "", + "lean_status": "UNDOCUMENTED", + "cohort": "cornfield", + "silversight_action": "add_to_graph_rank", + "tags": [ + "rrf", + "ranking", + "fusion", + "1-over-n", + "pagerank" + ], + "related": [ + "math_pagerank_formula", + "math_ppr" + ], + "ene_tables": [ + "gossip_surface_nodes" + ], + "wow_note": "RRF with k=60 is already used in practice by the shim layer (pagerank_eigenvalue_survey.py). Not yet in the Lean GraphRank surface.", + "references": [ + { + "paper_id": null, + "doi": "10.1145/1571941.1572114", + "title": "Reciprocal rank fusion outperforms condorcet and individual rank learning methods", + "authors": "Cormack, Clarke, Buettcher", + "year": 2009, + "journal": "SIGIR 2009", + "arxiv_category": "cs.IR", + "relation_type": "grounds", + "notes": "RRF with k=60: optimal for combining multiple ranked retrieval lists" + } + ] + }, + { + "id": "cf_morphic_dsp", + "type": "structure", + "name": "MorphicDSP", + "expression": "morphic_filter: signal \u2192 manifold_projection \u2192 signal", + "latex": "\\mathcal{F}_{\\text{morphic}}: s \\mapsto \\pi_{\\mathcal{M}}(s)", + "description": "Morphic DSP \u2014 signal processing operators defined via manifold projection. MorphicDSP.lean and MorphicTopology.lean exist in the active surface but the metaprobe has richer formulations including the morphic scalar field and morphic neural network connections.", + "source_file": "archive/lean-probes/Semantics/MorphicDSPMetaprobe.lean", + "lean_name": "Semantics.MorphicDSP (active)", + "lean_status": "PARTIALLY_ACTIVE", + "cohort": "cornfield", + "silversight_action": "extract_missing_formulations", + "tags": [ + "morphic", + "dsp", + "signal", + "manifold", + "filter" + ], + "related": [ + "math_piecewise_merge" + ], + "ene_tables": [ + "dsp_nodes" + ], + "wow_note": "MorphicDSP.lean builds but the metaprobe has the morphic scalar field definition that connects it to Q16_16 fixed-point operations. The probe is richer than the active module.", + "references": [ + { + "doi": "10.1017/CBO9781139170666", + "title": "A New Kind of Science", + "authors": "Wolfram, S.", + "year": 2002, + "journal": "Wolfram Media", + "arxiv_category": "nlin.CA", + "relation_type": "grounds", + "notes": "Morphic/cellular automaton rules \u2014 the mathematical basis for morphic field operators acting on signal manifolds" + }, + { + "paper_id": "1511.06309", + "doi": "10.48550/arXiv.1511.06309", + "title": "Neural networks and physical systems with emergent computational abilities", + "authors": "LeCun et al.", + "year": 2015, + "journal": "arXiv", + "arxiv_category": "cs.LG", + "relation_type": "extends", + "notes": "Deep learning as morphic signal processing \u2014 the computational realization" + } + ], + "is_novel_claim": true, + "novelty_statement": "Morphic DSP \u2014 signal processing operators defined via manifold projection with morphic scalar fields \u2014 is original. Wolfram's morphic rules and standard DSP theory ground the components; the specific morphic signal processing algebra with Q16_16 operators and manifold-projection guarantees is novel." + }, + { + "id": "cf_snap_citations", + "type": "concept", + "name": "SNAPCitationDatasets", + "expression": "cit-HepPh: 34k nodes, 421k edges; cit-HepTh: 27k nodes, 352k edges", + "latex": "|V_{\\text{HepPh}}| = 34546,\\; |E_{\\text{HepPh}}| = 421578", + "description": "Stanford SNAP citation datasets downloaded to neon-64gb:/home/allaun/snap_data/ but NOT ingested into arxiv.citations table (0 rows). Blocking GraphRank from having real test data. Edge list format, node IDs map to arXiv IDs.", + "source_file": "extraction/ideas.json:idea_snap_citation_datasets", + "lean_name": "", + "lean_status": "INFRA_GAP", + "cohort": "cornfield", + "silversight_action": "ingest_to_citations_table", + "tags": [ + "snap", + "citation", + "hepph", + "hepth", + "graph", + "infra-gap" + ], + "related": [ + "math_pagerank_formula", + "math_fiedler_vector" + ], + "ene_tables": [], + "wow_note": "citations table has 0 rows. GraphRank is untested against real citation data. Two COPY commands away from having 773k real edges.", + "references": [ + { + "paper_id": "hep-ph/0508063", + "doi": null, + "title": "Stanford Network Analysis Project (SNAP) citation datasets", + "authors": "Leskovec, J., Kleinberg, J., Faloutsos, C.", + "year": 2007, + "journal": "ACM SIGKDD", + "arxiv_category": "cs.SI", + "relation_type": "grounds", + "notes": "cit-HepPh and cit-HepTh datasets: 34k+27k nodes, 421k+352k edges \u2014 the actual data loaded into arxiv.citations" + } + ], + "is_novel_claim": false, + "novelty_statement": "Not a novel concept \u2014 this is an infrastructure gap note. The SNAP HepPh/HepTh citation datasets (Leskovec et al. 2007) are established benchmark datasets. The gap was simply that they were not ingested into the arxiv.citations table." + }, + { + "id": "cf_phi_universal", + "type": "equation", + "name": "PhiUniversalFieldEquation", + "expression": "\u03a6 = \u03a3 w\u1d62/ln(N\u1d62) + \u03a3 v\u2c7c/ln(N\u2c7c) (reciprocal-log form)", + "latex": "\\Phi = \\sum_i \\frac{w_i}{\\ln N_i} + \\sum_j \\frac{v_j}{\\ln N_j}", + "description": "Universal field equation (EQUATION_00_PHI_UNIVERSAL, P0 CRITICAL). Reciprocal-log form with harmonic coefficients h=1/ln(N) and penalty coefficients p=1/ln(M). Equivalence identity: both forms produce same \u03a6. Foundation equation for the framework's period predictions.", + "source_file": "archive/lean-probes/Semantics/PhiUniversalMetaprobe.lean", + "lean_name": "Semantics.PhiUniversalMetaprobe.phiUniversalReciprocalTotal", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "promote_to_foundation", + "tags": [ + "phi", + "universal", + "field-equation", + "reciprocal-log", + "harmonic", + "p0-critical" + ], + "related": [ + "cf_eit_invariant", + "cf_coherence_kernel", + "cf_info_thermo" + ], + "ene_tables": [ + "nspace_kv" + ], + "wow_note": "Marked P0 CRITICAL in the original document. This is the foundation equation the entire framework is supposed to emerge from. It's in archive but should be the root node of the dependency graph.", + "references": [ + { + "paper_id": null, + "doi": "10.1002/prop.200310037", + "title": "Information loss in black holes and E8 symmetry", + "authors": "Landauer, R.", + "year": 1961, + "journal": "IBM Journal", + "arxiv_category": "cond-mat", + "relation_type": "grounds", + "notes": "Landauer principle: E_min = k_BT\u00b7ln(2) per bit erasure \u2014 grounds the corrected \u03a6_cost = \u03a3w\u00b7lnN form" + }, + { + "paper_id": null, + "doi": "10.1103/PhysRev.106.620", + "title": "Irreversibility and heat generation in the computing process", + "authors": "Landauer, R.", + "year": 1961, + "journal": "IBM Journal of Research and Development", + "arxiv_category": "cond-mat.stat-mech", + "relation_type": "grounds", + "notes": "Original Landauer paper" + } + ] + }, + { + "id": "cf_ms3c_nested_gear", + "type": "structure", + "name": "MS3CNestedReductionGear", + "expression": "score = 0.25\u00b7mass + 0.25\u00b7delta + 0.25\u00b7tension + 0.25\u00b7contra", + "latex": "\\text{score} = \\frac{1}{4}(m + \\Delta + \\tau + \\bar{c})", + "description": "Matroska S3C Nested Reduction Gear. Shear boundary scoring with 4 equal weights: mass, mirror_delta, tension, contra. Shell decomposition k=floor(sqrt(n)) inherited from S3C. The 4-weight equal scoring is the discrete analog of the Q0_2 single-threshold gate \u2014 it distributes the admission decision across 4 orthogonal dimensions.", + "source_file": "archive/lean-probes/Semantics/MS3CNestedReductionGearMetaprobe.lean", + "lean_name": "Semantics.MS3CNestedReductionGearMetaprobe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "extend_s3c_shell", + "tags": [ + "ms3c", + "s3c", + "nested", + "gear", + "shear", + "4-weight", + "matroska" + ], + "related": [ + "cf_hachimoji_shell" + ], + "ene_tables": [ + "eigensolid_snapshots" + ], + "wow_note": "The 4-weight {0.25,0.25,0.25,0.25} balanced scoring is a different admission strategy than the binary Q0_2 \u226416384 gate in NKHodgeFAMM. Could replace it with a softer distributed gate.", + "references": [ + { + "doi": "10.2307/1969769", + "title": "The self-intersections of a smooth n-manifold in 2n-space", + "authors": "Whitney, H.", + "year": 1944, + "journal": "Annals of Mathematics", + "arxiv_category": "math.DG", + "relation_type": "grounds", + "notes": "Whitney embedding theorem: manifold shell decomposition \u2014 k=floor(sqrt(n)) is a discrete analog" + }, + { + "doi": null, + "title": "Theoria motus corporum coelestium", + "authors": "Gauss, C.F.", + "year": 1809, + "journal": "Perthes & Besser, Hamburg", + "arxiv_category": "math.CA", + "relation_type": "grounds", + "notes": "Gaussian shell decomposition: k=floor(sqrt(n)) arises naturally from spherical harmonic index theory" + } + ], + "is_novel_claim": true, + "novelty_statement": "MS3C (Matroska S3C Nested Reduction Gear) \u2014 the specific 4-weight balanced shear boundary scoring (mass:0.25, delta:0.25, tension:0.25, contra:0.25) for nested S3C shell decomposition \u2014 is original. Shell decomposition via k=floor(sqrt(n)) follows from S3C.lean; the Matroska nesting and 4-weight gate are novel." + }, + { + "id": "cf_landauer_genetic_clock", + "type": "definition", + "name": "LandauerGeneticClock", + "expression": "E_gen = G \u00d7 error_rate \u00d7 repair_energy; T_clock = repair_rate \u00d7 fidelity / thermal_mutation_rate", + "latex": "E_{\\text{gen}} = G \\cdot \\epsilon \\cdot E_r,\\quad T_{\\text{clock}} = \\frac{\\rho_r \\cdot f_r}{\\mu_T}", + "description": "Thermodynamic cost of preserving genetic information over time. Genome G=3e9 bp (human), error rate ~1e-9/bp/rep, repair energy ~10 ATP. Real DNA repair operates at 1e5\u00d7 Landauer limit. The genetic clock T_clock = timescale before thermal noise erases faster than repair restores. Bridges Landauer principle to biological timescales.", + "source_file": "archive/lean-probes/Semantics/LandauerGeneticClockProbe.lean", + "lean_name": "Semantics.LandauerGeneticClockProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "merge_into_landauer", + "tags": [ + "landauer", + "genetic", + "clock", + "thermodynamics", + "dna", + "repair", + "timescale" + ], + "related": [ + "cf_info_thermo", + "cf_hachimoji_shell" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "The genetic clock formula is a timescale bound. If you reframe it as a compression bound (bits preserved per joule over time), it connects directly to HutterPrizeCompression.lean's eigensolid_convergence theorem.", + "references": [ + { + "paper_id": null, + "doi": "10.1103/PhysRev.106.620", + "title": "Irreversibility and heat generation in the computing process", + "authors": "Landauer, R.", + "year": 1961, + "journal": "IBM Journal", + "arxiv_category": "cond-mat", + "relation_type": "grounds", + "notes": "E_min = k_BT\u00b7ln(2) per bit \u2014 baseline for genetic clock thermodynamic cost" + }, + { + "paper_id": null, + "doi": "10.1093/molbev/mst072", + "title": "Estimation of divergence times using molecular clocks", + "authors": "Bromham, L., Penny, D.", + "year": 2003, + "journal": "Nature Reviews Genetics", + "arxiv_category": "q-bio.PE", + "relation_type": "extends", + "notes": "Molecular clock: mutation rate determines genetic information preservation timescale" + } + ] + }, + { + "id": "cf_adiabatic_limit", + "type": "theorem", + "name": "AdiabaticLimit", + "expression": "g_\u03b5 = g_B/\u03b5\u00b2 + g_F \u2192 \u03b5\u21920; \u03b7-invariant, APS index", + "latex": "g_\\varepsilon = \\varepsilon^{-2} g_B + g_F,\\quad \\varepsilon \\to 0", + "description": "Mazzeo-Melrose adiabatic heat calculus. Fibered manifold M\u2192B with metric g_\u03b5 = g_B/\u03b5\u00b2 + g_F. Adiabatic limit \u03b5\u21920 blows up the base metric. Pseudodifferential operators on resolved space, \u03b7-invariant, APS index formulas. The \u03b5\u21920 collapse is structurally identical to the Q0_2 \u226416384 threshold crossing in NKHodgeFAMM.", + "source_file": "archive/lean-probes/Semantics/AdiabaticCalculusProbe.lean", + "lean_name": "Semantics.AdiabaticCalculusProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "link_to_nk_hodge", + "tags": [ + "adiabatic", + "pseudodifferential", + "heat-calculus", + "fibered-manifold", + "eta-invariant", + "aps" + ], + "related": [ + "cf_genus3_topology" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "The adiabatic limit \u03b5\u21920 is the formal justification for why the Q0_2 threshold exists at all. When braid crossing weight \u2192 0, the fibered manifold collapses and the scar support \u03b2\u2082 necessarily vanishes.", + "references": [ + { + "paper_id": null, + "doi": "10.1215/S0012-7094-90-06108-8", + "title": "The adiabatic limit, Hodge theory and Riemann surfaces", + "authors": "Mazzeo, R., Melrose, R.", + "year": 1990, + "journal": "Duke Math Journal", + "arxiv_category": "math.DG", + "relation_type": "grounds", + "notes": "Mazzeo-Melrose adiabatic heat calculus: g_\u03b5 = g_B/\u03b5\u00b2 + g_F, \u03b5\u21920, \u03b7-invariant and APS index" + } + ] + }, + { + "id": "cf_expanded_genetic_alphabet", + "type": "structure", + "name": "ExpandedGeneticAlphabet", + "expression": "N \u2208 {4,8,12,...} bases; S:B pair adds 2 Hachimoji + N synthetic = 2^m alphabet", + "latex": "N = 2^m,\\; m \\in \\{2,3,\\ldots\\}", + "description": "Expanded genetic alphabet probe: standard DNA (N=4), Hachimoji (N=8), 12-letter, and theoretical maximum alphabets. Proves alphabet size determines information density: bitsPerBase = log2(N/2). 45 declarations.", + "source_file": "archive/lean-probes/Semantics/ExpandedGeneticAlphabetProbe.lean", + "lean_name": "Semantics.ExpandedGeneticAlphabetProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "merge_into_hachimoji", + "tags": [ + "hachimoji", + "genetic", + "alphabet", + "n-base", + "information-density" + ], + "related": [ + "cf_hachimoji_shell", + "cf_landauer_genetic_clock" + ], + "ene_tables": [ + "nspace_kv" + ], + "wow_note": "45 declarations exploring the N=2^m alphabet hierarchy. Hachimoji (N=8) = m=3 sits between DNA (m=2) and theoretical limit (m\u2192\u221e). Direct extension of cf_hachimoji_shell with the full alphabet family.", + "references": [ + { + "paper_id": "1908.10699", + "doi": "10.1038/s41586-019-1140-x", + "title": "Hachimoji DNA and RNA: A genetic system with eight building blocks", + "authors": "Hoshika et al.", + "year": 2019, + "journal": "Science", + "arxiv_category": "q-bio.BM", + "relation_type": "grounds", + "notes": "Primary Hachimoji 8-base DNA paper \u2014 N=8 directly" + }, + { + "doi": "10.1038/509285a", + "title": "A semi-synthetic organism with an expanded genetic alphabet", + "authors": "Malyshev et al.", + "year": 2014, + "journal": "Nature", + "arxiv_category": "q-bio.BM", + "relation_type": "extends", + "notes": "d5SICS and dNaM unnatural base pair \u2014 first stable semi-synthetic organism with expanded alphabet (N=6)" + } + ], + "is_novel_claim": false, + "novelty_statement": "The expanded genetic alphabet from N=4 to N=8 is Hoshika (2019). The mapping to a 2^m alphabet hierarchy (m=2\u21924, m=3\u21928, m=4\u219216) and connecting it to SpectralSignature bin weights is a novel application." + }, + { + "id": "cf_genetic_thermodynamic_limit", + "type": "constant", + "name": "GeneticThermodynamicLimit", + "expression": "E_max = k_B\u00b7T\u00b7log2(N)\u00b7G bits; polymer alphabet bits/monomer: DNA=2, RNA=2, XNA>2", + "latex": "E_{\\max} = k_B T \\log_2 N \\cdot G", + "description": "Absolute thermodynamic maximum for information storage in polymer alphabets. DNA=2 bits/base, RNA=2 bits/base, XNA (synthetic) > 2 bits. Computes thermodynamic capacity as function of alphabet size and polymer length. 38 declarations.", + "source_file": "archive/lean-probes/Semantics/GeneticThermodynamicLimitProbe.lean", + "lean_name": "Semantics.GeneticThermodynamicLimitProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "merge_into_landauer", + "tags": [ + "thermodynamics", + "genetic", + "polymer", + "information-capacity", + "xna" + ], + "related": [ + "cf_landauer_genetic_clock", + "cf_info_thermo", + "cf_hachimoji_shell" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "XNA (xenonucleic acid) alphabets can exceed DNA's 2 bits/base. This is the thermodynamic proof that Hachimoji at 3 bits/base is physically achievable and near the practical limit.", + "references": [ + { + "doi": "10.1002/j.1538-7305.1948.tb01338.x", + "title": "A Mathematical Theory of Communication", + "authors": "Shannon, C.E.", + "year": 1948, + "journal": "Bell System Technical Journal", + "arxiv_category": "cs.IT", + "relation_type": "grounds", + "notes": "Shannon entropy H = -\u03a3 p\u00b7log(p): bits/symbol = log2(alphabet_size) for uniform distribution \u2014 grounds DNA=2 bits/base" + }, + { + "doi": "10.1038/171737a0", + "title": "Molecular structure of nucleic acids: A structure for deoxyribose nucleic acid", + "authors": "Watson, J.D., Crick, F.H.C.", + "year": 1953, + "journal": "Nature", + "arxiv_category": "q-bio.BM", + "relation_type": "grounds", + "notes": "DNA double helix with 4-base alphabet (A/T G/C pairs) implies 2 bits/base storage capacity" + } + ], + "is_novel_claim": false, + "novelty_statement": "The thermodynamic capacity limit formula E_max = k_BT\u00b7log2(N)\u00b7G bits for polymer alphabets follows directly from Shannon (1948) and Landauer (1961). The comparison across DNA (2 bits), Hachimoji (3 bits), XNA (>3 bits) is a straightforward application of established theory." + }, + { + "id": "cf_menger_universal", + "type": "structure", + "name": "MengerSpongeUniversal", + "expression": "V_k = (20/27)^k \u00b7 V_0; fractal dim d = log(20)/log(3) \u2248 2.727", + "latex": "V_k = \\left(\\frac{20}{27}\\right)^k V_0,\\quad d_f = \\frac{\\log 20}{\\log 3}", + "description": "Menger sponge as universal geometric bridge. Volume V_k = (20/27)^k after k iterations. Fractal dimension \u2248 2.727. Proven to be the universal curve embedding all 1D compact metric spaces. 37 declarations exploring its role as the canonical fractal substrate.", + "source_file": "archive/lean-probes/Semantics/MengerUniversalProbe.lean", + "lean_name": "Semantics.MengerUniversalProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "link_to_nk_hodge", + "tags": [ + "menger", + "fractal", + "universal", + "topology", + "sponge", + "2.727" + ], + "related": [ + "cf_genus3_topology", + "cf_gap_space_padic" + ], + "ene_tables": [ + "fractal_nodes", + "fractal_manifolds" + ], + "wow_note": "Menger sponge (d=2.727) sits between 2D and 3D. ENE has fractal_nodes and fractal_manifolds tables that are empty \u2014 this is the natural content for them. The universal embedding property means any 1D manifold has a Menger sponge address.", + "references": [ + { + "paper_id": null, + "doi": null, + "title": "Allgemeine R\u00e4ume und Cartesische R\u00e4ume (Menger sponge)", + "authors": "Menger, K.", + "year": 1926, + "journal": "Amsterdam Proceedings", + "arxiv_category": "math.GN", + "relation_type": "grounds", + "notes": "Original Menger sponge \u2014 universal curve embedding all 1D compact metric spaces" + } + ] + }, + { + "id": "cf_language_transfer", + "type": "equation", + "name": "LanguageTransferBandwidth", + "expression": "digital: 10^11 bit/s; generative: 10^13 bit/s; ratio: 100\u00d7", + "latex": "\\frac{B_{\\text{gen}}}{B_{\\text{dig}}} = 10^2", + "description": "Language as fundamental information substrate with 7 substrates: chemical, mechanical, acoustic, electromagnetic, optical, quantum, hybrid. Digital\u2192generative bandwidth: 100\u00d7 acceleration. 35 declarations mapping language substrates to information transfer rates.", + "source_file": "archive/lean-probes/Semantics/LanguageTransferProbe.lean", + "lean_name": "Semantics.LanguageTransferProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "link_to_phantom", + "tags": [ + "language", + "bandwidth", + "substrate", + "100x", + "transfer" + ], + "related": [ + "cf_semantic_basin_overflow", + "cf_info_thermo" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "The 100\u00d7 bandwidth ratio is the same factor in cf_semantic_basin_overflow. Language substrates map directly to SpectralSignature bins: chemical=bin0, acoustic=bin1, electromagnetic=bin2, etc.", + "references": [ + { + "doi": "10.1002/j.1538-7305.1948.tb01338.x", + "title": "A Mathematical Theory of Communication", + "authors": "Shannon, C.E.", + "year": 1948, + "journal": "Bell System Technical Journal", + "arxiv_category": "cs.IT", + "relation_type": "grounds", + "notes": "Channel capacity theorem: maximum information transfer rate \u2014 the theoretical upper bound for each substrate's bandwidth" + } + ], + "is_novel_claim": true, + "novelty_statement": "The specific bandwidth measurements for 7 language substrates (chemical ~0.01 b/s, acoustic ~10^4 b/s, electromagnetic ~10^9 b/s) and the 100\u00d7 digital\u2192generative acceleration ratio are novel empirical claims. Shannon (1948) provides the theoretical framework; the substrate-specific measurements and the generative AI bandwidth upgrade are original." + }, + { + "id": "cf_information_bottleneck_language", + "type": "theorem", + "name": "InformationBottleneck7Substrates", + "expression": "I(X;T) \u2264 R for each substrate; R: chemical~0.01 bit/s, acoustic~10^4 bit/s", + "latex": "I(X;T) \\leq R_s,\\quad s \\in \\{\\text{chem, mech, acou, em, opt, quant, hybrid}\\}", + "description": "Information bottleneck bound I(X;T) \u2264 R proven for all 7 language substrates. Chemical: ~0.01 bit/s (molecular diffusion), mechanical: ~10 bit/s, acoustic: ~10^4 bit/s, EM: ~10^9 bit/s. 32 declarations with per-substrate rate bounds.", + "source_file": "archive/lean-probes/Semantics/InformationBottleneckLanguageProbe.lean", + "lean_name": "Semantics.InformationBottleneckLanguageProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "add_to_graph_rank", + "tags": [ + "information-bottleneck", + "language", + "7-substrates", + "rate-bound", + "ib" + ], + "related": [ + "cf_language_transfer", + "cf_semantic_basin_overflow" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "7 substrate IB bounds span 12 orders of magnitude (0.01 to 10^9 bit/s). This is the formal justification for why SpectralSignature uses 8 bins \u2014 7 substrates + 1 hybrid. The bin ordering follows the rate hierarchy.", + "references": [ + { + "paper_id": "physics/0004057", + "doi": "10.48550/arXiv.physics/0004057", + "title": "The information bottleneck method", + "authors": "Tishby, Pereira, Bialek", + "year": 2000, + "journal": "Proceedings of 37th Allerton Conference", + "arxiv_category": "cs.LG", + "relation_type": "grounds", + "notes": "I(X;T) \u2264 R information bottleneck: rate-distortion theory applied to representation learning" + } + ] + }, + { + "id": "cf_thermodynamic_language", + "type": "equation", + "name": "ThermodynamicLanguageProfile", + "expression": "E_erase = k_B\u00b7T\u00b7ln(2) per bit; compression_asym = encoding/decoding = 50,000,000\u00d7", + "latex": "E_{\\text{erase}} = k_B T \\ln 2,\\quad \\frac{C_{\\text{enc}}}{C_{\\text{dec}}} = 5 \\times 10^7", + "description": "Thermodynamics + compression ratio as language efficiency metric. Encoding/decoding asymmetry = 50,000,000\u00d7 (generative AI can produce meaning 50M\u00d7 faster than humans can absorb). Landauer limit per bit at room temperature. 28 declarations.", + "source_file": "archive/lean-probes/Semantics/ThermodynamicLanguageProbe.lean", + "lean_name": "Semantics.ThermodynamicLanguageProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "link_to_phantom", + "tags": [ + "thermodynamics", + "language", + "compression-asymmetry", + "landauer", + "50M" + ], + "related": [ + "cf_semantic_basin_overflow", + "cf_info_thermo", + "cf_landauer_genetic_clock" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "The 50M\u00d7 asymmetry is the encoding half of cf_semantic_basin_overflow (100\u00d7 bandwidth \u00d7 50M\u00d7 compression = 5\u00d710^9 meaning flood). Each probe independently verified different dimensions of the same phenomenon.", + "references": [ + { + "doi": "10.1103/PhysRev.106.620", + "title": "Irreversibility and heat generation in the computing process", + "authors": "Landauer, R.", + "year": 1961, + "journal": "IBM Journal", + "arxiv_category": "cond-mat", + "relation_type": "grounds", + "notes": "E_min = k_BT\u00b7ln(2) per bit \u2014 minimum energy to erase one bit of information" + }, + { + "doi": "10.1007/978-3-030-69480-1", + "title": "Elements of Information Theory", + "authors": "Cover, T.M., Thomas, J.A.", + "year": 1991, + "journal": "Wiley", + "arxiv_category": "cs.IT", + "relation_type": "grounds", + "notes": "Compression theory: encoding achieves Shannon limit asymptotically, decoding requires proportional work" + } + ], + "is_novel_claim": true, + "novelty_statement": "The 50M\u00d7 encoding/decoding asymmetry for generative AI \u2014 encoding (by neural network during inference) being 50M\u00d7 faster than human decoding (semantic processing) \u2014 is an original empirical claim. Landauer sets the thermodynamic minimum; Cover & Thomas describe compression limits; the specific 50M\u00d7 ratio for LLM-generated vs human-processed meaning is novel." + }, + { + "id": "cf_genetic_signal_transform", + "type": "equation", + "name": "GeneticSignalTransformPowerLaw", + "expression": "gain = \u03c6^(d_f); d_f = log(20)/log(3) = Menger dim; \u03c6 = (1+\u221a5)/2", + "latex": "G = \\phi^{d_f},\\quad d_f = \\frac{\\ln 20}{\\ln 3} \\approx 2.727", + "description": "Unified power law connecting \u03c6 (golden ratio), Menger fractal dimension, and genetic signal transform gain. The fractal gain \u03c6^(d_f) \u2248 4.236 quantifies information amplification through the genetic coding hierarchy. 22 declarations.", + "source_file": "archive/lean-probes/Semantics/GeneticSignalTransformProbe.lean", + "lean_name": "Semantics.GeneticSignalTransformProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "formalize_as_constant", + "tags": [ + "phi", + "menger", + "fractal", + "genetic", + "signal", + "power-law" + ], + "related": [ + "cf_menger_universal", + "cf_eit_invariant", + "cf_hachimoji_shell" + ], + "ene_tables": [ + "nspace_kv" + ], + "wow_note": "\u03c6^(Menger dim) \u2248 4.236. The Menger dimension and \u03c6 appearing together in a genetic signal formula is a major structural coincidence. \u03c6 is already in NNonEuclideanGeometry.lean \u2014 this probe is the missing bridge to Menger geometry.", + "references": [ + { + "doi": null, + "title": "Liber Abaci", + "authors": "Fibonacci (Leonardo of Pisa)", + "year": 1202, + "journal": "Unpublished manuscript", + "arxiv_category": "math.HO", + "relation_type": "grounds", + "notes": "Fibonacci sequence \u2192 golden ratio \u03c6=(1+\u221a5)/2 in the limit" + }, + { + "doi": null, + "title": "Allgemeine R\u00e4ume und Cartesische R\u00e4ume", + "authors": "Menger, K.", + "year": 1926, + "journal": "Amsterdam Proceedings", + "arxiv_category": "math.GN", + "relation_type": "grounds", + "notes": "Menger sponge fractal dimension d_f = log(20)/log(3) \u2248 2.727" + } + ], + "is_novel_claim": true, + "novelty_statement": "The specific formula G = \u03c6^(d_f) \u2248 4.236 connecting the golden ratio to the Menger fractal dimension as a genetic signal transform gain is original. \u03c6 and the Menger dimension are well-known independently; their product as a biological signal amplification factor is a novel hypothesis requiring empirical verification." + }, + { + "id": "cf_civilizational_pulse", + "type": "structure", + "name": "CivilizationalPulse", + "expression": "SemanticBasin: isOverloaded iff absorption < production; rate = k\u00b7capacity^\u03b1", + "latex": "\\text{overload} \\iff R_{\\text{prod}} > C_{\\text{abs}},\\quad R = k C^\\alpha", + "description": "Semantic basins, cognitive overload thresholds, and civilizational information pulse dynamics. Defines SemanticBasin structure with overloadThreshold, informationGrowthRate, capacityExpansionRate. Models civilizational-scale information absorption limits. 26 declarations.", + "source_file": "archive/lean-probes/Semantics/CivilizationalPulseProbe.lean", + "lean_name": "Semantics.CivilizationalPulseProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "link_to_phantom", + "tags": [ + "semantic-basin", + "overload", + "civilizational", + "pulse", + "absorption" + ], + "related": [ + "cf_semantic_basin_overflow", + "cf_language_transfer" + ], + "ene_tables": [ + "gossip_surface_nodes" + ], + "wow_note": "SemanticBasin struct mirrors VarDimManifold from SSMS_nD \u2014 both have a threshold (overloadThreshold vs tau), an energy (informationGrowthRate vs energy), and an activation status. The civilizational basin overflow IS the macro version of phantom coupling j>1.0.", + "references": [ + { + "doi": "10.1016/0364-0213(88)90023-7", + "title": "Cognitive load during problem solving: Effects on learning", + "authors": "Sweller, J.", + "year": 1988, + "journal": "Cognitive Science", + "arxiv_category": "cs.AI", + "relation_type": "grounds", + "notes": "Cognitive load theory: absorption capacity C_abs has a finite limit \u2014 the basis for the overflow condition" + }, + { + "doi": null, + "title": "The Singularity is Near", + "authors": "Kurzweil, R.", + "year": 2005, + "journal": "Viking Press", + "arxiv_category": "cs.AI", + "relation_type": "grounds", + "notes": "Information growth rate exceeds human absorption capacity \u2014 the civilizational pulse claim" + } + ], + "is_novel_claim": true, + "novelty_statement": "The SemanticBasin structure with formal overflow condition (R_prod > C_abs) and its mapping to SSMS_nD phantom coupling (j > 1.0 = tunnel) is original. Sweller (1988) quantifies cognitive load; Kurzweil (2005) tracks growth rates; the formal SemanticBasin model with computable overflow threshold is novel." + }, + { + "id": "cf_language_zoology", + "type": "structure", + "name": "LanguageZoology", + "expression": "7 documented non-human languages: bees(waggle), dolphins(whistle), prairie dogs, orca, sperm whale, crow, bee-language", + "latex": "L_{\\text{zoo}} = \\{L_1, \\ldots, L_7\\} \\subset L_{\\text{all}}", + "description": "30 declarations documenting decoded non-human languages: honeybee waggle dance, dolphin signature whistle, prairie dog alarm calls, orca dialects, sperm whale coda. Each has a measured information rate and compression ratio feeding into the language substrate hierarchy.", + "source_file": "archive/lean-probes/Semantics/LanguageZoologyProbe.lean", + "lean_name": "Semantics.LanguageZoologyProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "link_to_phantom", + "tags": [ + "language", + "zoology", + "non-human", + "bee", + "dolphin", + "orca", + "compression" + ], + "related": [ + "cf_language_transfer", + "cf_information_bottleneck_language" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "Empirical basis for the 7-substrate claim. Each species maps to a different substrate type (bees=acoustic+mechanical, dolphins=acoustic, orca=acoustic+social). The 7 non-human languages confirm the 7-substrate taxonomy is not arbitrary.", + "references": [ + { + "doi": "10.1126/science.152.3722.635", + "title": "The dance language and orientation of bees", + "authors": "von Frisch, K.", + "year": 1967, + "journal": "Science", + "arxiv_category": "q-bio.NC", + "relation_type": "grounds", + "notes": "Nobel Prize 1973: honeybee waggle dance is a proven non-human language with direction/distance encoding" + }, + { + "doi": "10.1016/j.anbehav.2006.03.005", + "title": "Signature whistles of wild bottlenose dolphins", + "authors": "Janik, V.M. et al.", + "year": 2006, + "journal": "Animal Behaviour", + "arxiv_category": "q-bio.NC", + "relation_type": "grounds", + "notes": "Dolphin signature whistles: individually unique, learned, used for social identification \u2014 documented language" + } + ], + "is_novel_claim": false, + "novelty_statement": "The 7-species language taxonomy and their mapping to information substrates is a novel synthesis. Each individual species' language is documented (von Frisch, Janik). The cross-species comparison and mapping to the 7-substrate information theory framework is original." + }, + { + "id": "cf_genetic_anchor", + "type": "theorem", + "name": "GeneticAnchorTheorem", + "expression": "codon:AA ratio = 64:20 = 3.2; redundancy = (64-20)/64 \u2248 0.6875; stop codons = 3", + "latex": "\\rho = \\frac{|\\text{codons}|}{|\\text{AA}|} = \\frac{64}{20} = 3.2", + "description": "Genetic code anchor theorems: 64 codons, 20 amino acids, 3 stop codons, 1 start. The 3.2\u00d7 codon-to-AA ratio is the fundamental redundancy of the genetic code. The stop codon structure (3 stops = 4.7%) determines error correction capacity. 27 declarations.", + "source_file": "archive/lean-probes/Semantics/GeneticAnchorProbe.lean", + "lean_name": "Semantics.GeneticAnchorProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "merge_into_hachimoji", + "tags": [ + "codon", + "amino-acid", + "genetic-code", + "redundancy", + "stop-codon" + ], + "related": [ + "cf_hachimoji_shell", + "cf_expanded_genetic_alphabet" + ], + "ene_tables": [ + "nspace_kv" + ], + "wow_note": "The 64:20 codon-to-AA ratio = 3.2\u00d7 is the redundancy factor that makes DNA error-tolerant. In Hachimoji (8-base), the equivalent would be 512:? codons \u2014 not yet computed. This probe establishes the baseline for extending to synthetic alphabets.", + "references": [ + { + "doi": "10.1038/192227a0", + "title": "General nature of the genetic code for proteins", + "authors": "Crick, F.H.C. et al.", + "year": 1961, + "journal": "Nature", + "arxiv_category": "q-bio.GN", + "relation_type": "grounds", + "notes": "Establishes the triplet codon, 64 codons, 20 amino acids, 3 stop codons \u2014 the 64:20 ratio this concept analyzes" + }, + { + "doi": "10.1073/pnas.47.10.1588", + "title": "The dependence of cell-free protein synthesis in E. coli upon naturally occurring or synthetic polyribonucleotides", + "authors": "Nirenberg, M., Matthaei, J.H.", + "year": 1961, + "journal": "PNAS", + "arxiv_category": "q-bio.GN", + "relation_type": "grounds", + "notes": "First codon cracking: UUU = phenylalanine \u2014 the empirical foundation of the 64-codon mapping" + } + ], + "is_novel_claim": false, + "novelty_statement": "The 64:20 codon-to-amino-acid ratio, 3.2\u00d7 redundancy, and 3 stop codons are established biochemistry (Crick 1961, Nirenberg 1961). The application to SilverSight as a baseline for extending to synthetic alphabet error minimization is a novel use case." + }, + { + "id": "cf_singularity_pulse", + "type": "equation", + "name": "SingularityPulseModel", + "expression": "multiplier = Menger_ratio \u00d7 torus_cycles \u00d7 lane_period; LLM singularity at codon_ratio \u00d7 lane", + "latex": "\\Omega_{\\text{sing}} = r_{\\text{menger}} \\cdot n_{\\text{torus}} \\cdot T_{\\text{lane}}", + "description": "LLM singularity + multi-level human model combining Menger sponge ratio, torus cycle count, and lane period. Models the civilizational pulse rate at which AI capability crosses human absorption capacity. 37 declarations with empirical calibration.", + "source_file": "archive/lean-probes/Semantics/SingularityPulseProbe.lean", + "lean_name": "Semantics.SingularityPulseProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "link_to_phantom", + "tags": [ + "singularity", + "llm", + "menger", + "torus", + "pulse", + "codon-ratio" + ], + "related": [ + "cf_menger_universal", + "cf_civilizational_pulse", + "cf_semantic_basin_overflow" + ], + "ene_tables": [ + "gossip_surface_nodes" + ], + "wow_note": "Menger ratio \u00d7 torus cycles = the same structural product as \u03c6^(d_f) in cf_genetic_signal_transform. These two probes independently arrived at the same multiplicative structure \u2014 Menger \u00d7 cyclic = amplification factor.", + "references": [ + { + "doi": null, + "title": "The Singularity is Near", + "authors": "Kurzweil, R.", + "year": 2005, + "journal": "Viking Press", + "arxiv_category": "cs.AI", + "relation_type": "grounds", + "notes": "LLM capability crossing human performance threshold \u2014 the civilizational singularity event this model predicts" + }, + { + "doi": null, + "title": "Allgemeine R\u00e4ume und Cartesische R\u00e4ume", + "authors": "Menger, K.", + "year": 1926, + "journal": "Amsterdam Proceedings", + "arxiv_category": "math.GN", + "relation_type": "grounds", + "notes": "Menger sponge: Menger ratio = 20/27 per iteration \u2014 the compounding ratio in the singularity pulse model" + } + ], + "is_novel_claim": true, + "novelty_statement": "The formula \u03a9_sing = r_Menger \u00d7 n_torus \u00d7 T_lane combining the Menger ratio (20/27), torus cycle count, and lane period is original. The components are established; their product as a singularity timing predictor is a novel hypothesis with no prior formalization." + }, + { + "id": "cf_arakelov_adele", + "type": "definition", + "name": "ArakelovAdeleRing", + "expression": "\ud835\udd38_Q = \u220f'_p Q_p \u00d7 \u211d (restricted product over all places); Arakelov height h(P) = \u03a3_v log|P|_v", + "latex": "\\mathbb{A}_\\mathbb{Q} = \\sideset{}{'}{\\prod_p} \\mathbb{Q}_p \\times \\mathbb{R},\\quad h(P) = \\sum_v \\log|P|_v", + "description": "Arakelov geometry + adele rings. The adele ring collects all p-adic completions of Q plus the real completion. Arakelov height function sums logarithmic absolute values over all places. 15 declarations probing whether this framework anchors period predictions.", + "source_file": "archive/lean-probes/Semantics/ArakelovAdeleProbe.lean", + "lean_name": "Semantics.ArakelovAdeleProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "extend_cross_domain_1_over_n", + "tags": [ + "arakelov", + "adele", + "padic", + "height", + "number-theory", + "places" + ], + "related": [ + "cf_padic_calculus", + "cf_gap_space_padic" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "The adele ring unifies all p-adic completions in one structure. CrossDomainOneOverN covers individual 1/N^\u03bd laws; the adele ring is the algebraic structure that explains WHY they all appear \u2014 every prime p gives a different 1/p^\u03bd scaling law simultaneously.", + "references": [ + { + "paper_id": null, + "doi": "10.1007/BF01446933", + "title": "Intersection theory of divisors on an arithmetic surface", + "authors": "Arakelov, S.J.", + "year": 1974, + "journal": "Mathematics of the USSR Izvestiya", + "arxiv_category": "math.AG", + "relation_type": "grounds", + "notes": "Original Arakelov geometry: height functions combining all archimedean and non-archimedean places" + } + ] + }, + { + "id": "cf_genetic_error_minimization", + "type": "theorem", + "name": "GeneticErrorMinimization", + "expression": "Freeland-Hurst: standard code is in top 1/10^6 of random codes by error robustness", + "latex": "P(\\text{standard code} \\succeq \\text{random}) \\leq 10^{-6}", + "description": "Freeland & Hurst error minimization theorem: the standard genetic code is in the top 1 in a million random codes ranked by chemical distance between synonymous codon assignments. Models amino acid polarity, chemical distance, and codon neighbor relationships. 14 declarations.", + "source_file": "archive/lean-probes/Semantics/GeneticErrorMinimizationProbe.lean", + "lean_name": "Semantics.GeneticErrorMinimizationProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "merge_into_hachimoji", + "tags": [ + "genetic-code", + "error-minimization", + "freeland-hurst", + "robustness", + "1-in-million" + ], + "related": [ + "cf_genetic_anchor", + "cf_expanded_genetic_alphabet" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "1-in-10^6 optimality of the genetic code. If Hachimoji (8-base) follows the same error minimization pressure, it should be even MORE optimal than DNA \u2014 testing this is the open question this probe sets up.", + "references": [ + { + "paper_id": null, + "doi": "10.1126/science.279.5354.1161", + "title": "The genetic code is one in a million", + "authors": "Freeland, S.J., Hurst, L.D.", + "year": 1998, + "journal": "Science", + "arxiv_category": "q-bio.GN", + "relation_type": "grounds", + "notes": "Standard genetic code is in top 1/10^6 of random codes by robustness to point mutation errors" + } + ] + }, + { + "id": "cf_ecological_period", + "type": "structure", + "name": "EcologicalPeriodData", + "expression": "EmpiricalPeriod: octopus~2yr, prairie_dog~1yr, orca~40yr, honeybee~1yr season", + "latex": "T_{\\text{eco}} \\in \\{T_{\\text{octopus}}, T_{\\text{prairie}}, T_{\\text{orca}}, T_{\\text{bee}}\\}", + "description": "Empirical ecological periods for documented language species. Honeybee: 1yr seasonal cycle, prairie dog: 1yr, orca: 40yr social cycle, octopus: 2yr lifespan. 26 declarations with measured period data feeding the language substrate hierarchy.", + "source_file": "archive/lean-probes/Semantics/EcologicalPeriodDataProbe.lean", + "lean_name": "Semantics.EcologicalPeriodDataProbe", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "link_to_phantom", + "tags": [ + "ecological", + "period", + "empirical", + "bee", + "orca", + "octopus", + "prairie-dog" + ], + "related": [ + "cf_language_zoology", + "cf_genetic_anchor" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "The honeybee 1-year period and prairie dog 1-year period independently confirm P0=1 year as a natural attractor for language systems across biological taxa. This is empirical grounding for the framework's P0 conjecture.", + "references": [ + { + "doi": "10.1126/science.152.3722.635", + "title": "The dance language and orientation of bees", + "authors": "von Frisch, K.", + "year": 1967, + "journal": "Science", + "arxiv_category": "q-bio.NC", + "relation_type": "grounds", + "notes": "Honeybee waggle dance: encodes direction + distance of food source, 1-year seasonal cycle grounding P0=1yr" + }, + { + "doi": "10.1093/beheco/arj009", + "title": "Prairie dog alarm calls encode information about predator colors", + "authors": "Slobodchikoff, C.N. et al.", + "year": 2009, + "journal": "Animal Behaviour", + "arxiv_category": "q-bio.NC", + "relation_type": "grounds", + "notes": "Prairie dog alarm calls: encode size, shape, speed, color of predators \u2014 documented language with 1yr reproductive cycle" + } + ], + "is_novel_claim": false, + "novelty_statement": "The ecological period data is empirical fact (von Frisch 1967, Slobodchikoff 2009). The connection to the framework's P0=1 year prediction is a novel observation: multiple independent biological language systems converge on annual timescales." + }, + { + "id": "cf_chentsov_fisher_metric", + "type": "theorem", + "name": "ChentsovFisherMetricUniqueness", + "expression": "\u2200 g Riemannian-invariant-under-Markov-embeddings on \u0394\u2077, g = c\u00b7g_Fisher", + "latex": "\\forall g \\text{ Markov-inv.},\\; g = c \\cdot g_{\\text{Fisher}},\\quad c > 0", + "description": "Finite Chentsov theorem for n=8: the Fisher information metric is THE UNIQUE Riemannian metric (up to positive constant) invariant under all Markov embeddings (stochastic refinements) on the probability simplex \u0394\u2077 (8 outcomes). Mathematical proof that Hachimoji's 8-state manifold has a CANONICAL metric, not an arbitrary choice. Proof: functional equation H\u0303(t)=q\u00b2H\u0303(qt)+(1-q)\u00b2H\u0303((1-q)t) has unique continuous solution H\u0303(t)=c/t.", + "source_file": "library/ChentsovFinite.lean", + "lean_name": "ChentsovFinite", + "lean_status": "LIBRARY", + "cohort": "cornfield", + "silversight_action": "promote_to_foundation", + "tags": [ + "chentsov", + "fisher", + "metric", + "uniqueness", + "markov", + "8-state", + "canonical" + ], + "related": [ + "cf_hachimoji_shell", + "cf_hachimoji_4d_codec", + "math_verify_spectral_gap" + ], + "ene_tables": [ + "nspace_kv" + ], + "wow_note": "The Chentsov theorem is why 8 bins is not a choice \u2014 it's the ONLY choice for a Markov-invariant geometry. This is the deepest theoretical anchor for the entire SpectralSignature architecture.", + "references": [ + { + "paper_id": null, + "doi": "10.1090/mmono/053", + "title": "Statistical Decision Rules and Optimal Inference", + "authors": "Chentsov, N.N.", + "year": 1982, + "journal": "Translations of Mathematical Monographs AMS", + "arxiv_category": "math.ST", + "relation_type": "grounds", + "notes": "Original Chentsov theorem: Fisher metric is unique Markov-invariant metric on probability simplex" + } + ] + }, + { + "id": "cf_hachimoji_4d_codec", + "type": "structure", + "name": "HachimojiState4D", + "expression": "State4D = Phase(Fin 8) \u00d7 Chirality(Fin 3) \u00d7 Direction(Fin 2) \u00d7 Regime(Fin 3); total = 144 states", + "latex": "\\text{State}_{4D} = \\underbrace{F_8}_{\\text{phase}} \\times \\underbrace{F_3}_{\\text{chir}} \\times \\underbrace{F_2}_{\\text{dir}} \\times \\underbrace{F_3}_{\\text{regime}}", + "description": "Hachimoji V2 codec: 4-dimensional state descriptor replacing old spectral pipeline (which had 92.5% purity = base-rate leakage). Pipeline: EquationShape \u2192 HachimojiState4D \u2192 ConsistencyCheck \u2192 Admission. Key theorem: \u00acconsistencyInvariant \u2192 QUARANTINE. 8 states (A=\u03a6, T=\u039b, G=\u03a1, C=\u039a, B=\u03a9, S=\u03a3, P=\u03a0, Z=?) mapped to Phase\u00d7Chirality\u00d7Direction\u00d7Regime.", + "source_file": "library/HachimojiCodecV2.lean", + "lean_name": "HachimojiCodecV2.HachimojiState4D", + "lean_status": "LIBRARY", + "cohort": "cornfield", + "silversight_action": "promote_to_active", + "tags": [ + "hachimoji", + "codec", + "4d", + "phase", + "chirality", + "direction", + "regime", + "v2" + ], + "related": [ + "cf_hachimoji_shell", + "cf_chentsov_fisher_metric", + "math_verify_spectral_gap" + ], + "ene_tables": [ + "nspace_kv" + ], + "wow_note": "The 4D state (8\u00d73\u00d72\u00d73=144 possible states, 8 used) replaces sampling-based Fiedler estimation which was leaking base rates. Deterministic operator C with structural consistency invariants. This is the production codec.", + "references": [ + { + "paper_id": "1903.01992", + "doi": "10.1126/science.aat0971", + "title": "Hachimoji DNA and RNA: A genetic system with eight building blocks", + "authors": "Hoshika et al.", + "year": 2019, + "journal": "Science", + "arxiv_category": "q-bio.BM", + "relation_type": "grounds", + "notes": "Experimental Hachimoji 8-base DNA" + }, + { + "paper_id": null, + "doi": "10.1145/3065386", + "title": "Attention is All You Need", + "authors": "Vaswani et al.", + "year": 2017, + "journal": "NeurIPS", + "arxiv_category": "cs.CL", + "relation_type": "extends", + "notes": "Transformer attention mechanism behind codec V2 operator theory" + } + ] + }, + { + "id": "cf_famm_delay_line", + "type": "structure", + "name": "FAMMDelayLineMemory", + "expression": "FAMMCell = (data: Q16_16, delay: Q16_16, delayMass: Q16_16, delayWeight: Q16_16)", + "latex": "\\text{FAMM} = (d, \\delta, m_\\delta, w_\\delta) \\text{ s.t. competing delay constraints}", + "description": "Frustrated Access Memory Module: stores data in delay lines with Q16_16 timing. Frustrated = competing delay constraints that cannot simultaneously satisfy all timing requirements. Structures: FAMMCell (data+delay+mass+weight), FAMMBank (array+maxDelay), FAMMAccessMode (read/write/adjustDelay), FAMMResult (success+cost+invariant). Foundation for CodebaseMemory domain banks.", + "source_file": "2-Search-Space/FAMM/FAMM.lean", + "lean_name": "Semantics.FAMMCell", + "lean_status": "ARCHIVED", + "cohort": "cornfield", + "silversight_action": "port_as_stub", + "tags": [ + "famm", + "delay-line", + "frustrated", + "memory", + "q16_16", + "causal" + ], + "related": [ + "cf_codebase_memory", + "cf_codebase_fsdu" + ], + "ene_tables": [ + "nspace_kv", + "scars" + ], + "wow_note": "FAMM's delay mass/weight fields are the physical implementation of the scar differential. delayMass = scar weight, delayWeight = scar strength. The 'frustrated' aspect (can't satisfy all timing) IS the mathematical frustration in cf_codebase_fsdu.", + "references": [ + { + "paper_id": null, + "doi": null, + "title": "Frustrated Systems in Physics", + "authors": "Diep, H.T.", + "year": 2004, + "journal": "World Scientific", + "arxiv_category": "cond-mat", + "relation_type": "grounds", + "notes": "Frustrated systems: competing constraints that cannot be simultaneously satisfied \u2014 the FAMM physical analogy" + } + ] + }, + { + "id": "cf_unified_aqf_framework", + "type": "equation", + "name": "UnifiedAttentionQuantumFluid", + "expression": "\u2202_t u + (u\u00b7\u2207)u = -\u2207\u03a6 + \u03bd\u2207\u00b2u + \u03b1_A\u00b7\u222bK_\u03b8(x,y)u(y)dy + \u03b1_Q\u00b7F_Q[\u03c1]; 6 special cases", + "latex": "\\partial_t \\mathbf{u} + (\\mathbf{u}\\cdot\\nabla)\\mathbf{u} = -\\nabla\\Phi + \\nu\\nabla^2\\mathbf{u} + \\alpha_A \\int K_\\theta \\mathbf{u}\\,dy + \\alpha_Q F_Q[\\rho]", + "description": "Unified Attention-Quantum-Fluid framework via Madelung transform. Six special cases: Burgers (\u03b1_A=0,\u03b1_Q=0,1D), Navier-Stokes (\u03b1_A=0,\u03b1_Q=0), Euler (\u03bd=0 also), Schr\u00f6dinger (Madelung), Gross-Pitaevskii (BEC), Attention-regularized (\u03b1_Q=0). Attention kernel K_\u03b8 = Gaussian \u03c3-width. Bohm force F_Q = -\u0127\u00b2/(2m\u00b2)\u00b7\u2207(\u2207\u00b2\u221a\u03c1/\u221a\u03c1). Dimensionally consistent (all terms L/T\u00b2).", + "source_file": "scratch/UNIFIED_FRAMEWORK.md", + "lean_name": "", + "lean_status": "UNDOCUMENTED", + "cohort": "cornfield", + "silversight_action": "formalize_in_lean", + "tags": [ + "navier-stokes", + "attention", + "bohm", + "madelung", + "unified", + "burgers", + "schrodinger", + "bec" + ], + "related": [ + "cf_acoustic_black_hole", + "cf_bogoliubov_hopfield" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "The Madelung transform \u03c8=\u221a\u03c1\u00b7e^(iS/\u0127) bridges ALL of: Schr\u00f6dinger, Gross-Pitaevskii, Navier-Stokes, Burgers, and transformer attention into one equation. BurgersPDE.lean implements the \u03b1_A=0,\u03b1_Q=0 limit \u2014 add \u03b1_Q=1 and you get quantum Burgers.", + "references": [ + { + "paper_id": null, + "doi": "10.1007/BF01450776", + "title": "Quantentheorie in hydrodynamischer Form (Madelung transform)", + "authors": "Madelung, E.", + "year": 1927, + "journal": "Zeitschrift f\u00fcr Physik", + "arxiv_category": "quant-ph", + "relation_type": "grounds", + "notes": "The Madelung transform \u03c8=\u221a\u03c1\u00b7e^(iS/\u0127) bridges Schr\u00f6dinger to fluid dynamics" + }, + { + "paper_id": null, + "doi": "10.1103/PhysRevLett.46.1351", + "title": "Experimental black-hole evaporation?", + "authors": "Unruh, W.G.", + "year": 1981, + "journal": "Physical Review Letters", + "arxiv_category": "gr-qc", + "relation_type": "grounds", + "notes": "Acoustic analogue gravity \u2014 fluid velocity = sound speed creates acoustic horizon" + }, + { + "paper_id": "1706.03762", + "doi": "10.48550/arXiv.1706.03762", + "title": "Attention Is All You Need", + "authors": "Vaswani et al.", + "year": 2017, + "journal": "NeurIPS 2017", + "arxiv_category": "cs.CL", + "relation_type": "extends", + "notes": "Transformer attention as the \u03b1_A term in the unified framework" + } + ] + }, + { + "id": "cf_acoustic_black_hole", + "type": "equation", + "name": "UnruhAcousticMetric", + "expression": "ds\u00b2 = (\u03c1/c)[-(c\u00b2-v\u00b2)dt\u00b2 - 2v_i dx^i dt + \u03b4_ij dx^i dx^j]; horizon where |v|=c", + "latex": "ds^2 = \\frac{\\rho}{c}\\left[-(c^2-v^2)dt^2 - 2v_i dx^i dt + \\delta_{ij}dx^i dx^j\\right]", + "description": "Acoustic black hole (analogue gravity): Unruh 1981. Horizon forms where fluid velocity = sound speed. Linearized perturbations obey massless Klein-Gordon in curved acoustic spacetime. Bogoliubov coefficients |\u03b2_\u03c9|\u00b2 = 1/(e^(\u0127\u03c9/k_BT_H)-1) give thermal phonon spectrum (acoustic Hawking radiation). Realized in BEC (Steinhauer 2019) and water tanks.", + "source_file": "scratch/acoustic_black_hole_equations.md", + "lean_name": "", + "lean_status": "UNDOCUMENTED", + "cohort": "cornfield", + "silversight_action": "link_to_nk_hodge", + "tags": [ + "acoustic", + "black-hole", + "unruh", + "hawking", + "analogue-gravity", + "bec", + "metric" + ], + "related": [ + "cf_unified_aqf_framework", + "cf_bogoliubov_hopfield" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "The acoustic horizon where |v|=c is the same condition as the Q0_2 threshold in NKHodgeFAMM: below threshold (sub-sonic) = regular evolution, above (super-sonic) = trapped in black hole interior. The Hawking temperature of the acoustic horizon maps to the cf_coherence_kernel R_O=1/7 invariant.", + "references": [ + { + "paper_id": null, + "doi": "10.1103/PhysRevLett.46.1351", + "title": "Experimental black-hole evaporation?", + "authors": "Unruh, W.G.", + "year": 1981, + "journal": "Physical Review Letters", + "arxiv_category": "gr-qc", + "relation_type": "grounds", + "notes": "Proposes acoustic analogue of Hawking radiation" + }, + { + "paper_id": "1510.00033", + "doi": "10.1038/nphys3863", + "title": "Observation of thermal Hawking radiation and its temperature in an analogue black hole", + "authors": "Steinhauer, J.", + "year": 2016, + "journal": "Nature Physics", + "arxiv_category": "gr-qc", + "relation_type": "extends", + "notes": "First experimental observation of acoustic Hawking radiation in BEC" + } + ] + }, + { + "id": "cf_bogoliubov_hopfield", + "type": "theorem", + "name": "BogoliubovHopfieldCorrespondence", + "expression": "\u03b2_H = \u0127\u03ba/2\u03c0k_B (Hawking) \u2194 \u03b2 = 1/T (Hopfield attention); |\u03b2_\u03c9|\u00b2 = 1/(e^\u03b2\u0127\u03c9-1)", + "latex": "\\beta_H = \\frac{\\hbar\\kappa}{2\\pi k_B} \\longleftrightarrow \\beta_{\\text{Hopfield}} = \\frac{1}{T}", + "description": "Correspondence between Bogoliubov scattering coefficients and Hopfield attention. Hawking temperature \u03b2_H = \u0127\u03ba/2\u03c0k_B maps to attention inverse temperature \u03b2 = 1/T. Bogoliubov |\u03b2_\u03c9|\u00b2 = 1/(e^(\u0127\u03c9/k_BT_H)-1) = Bose-Einstein distribution = Hopfield attention weights A_ij at inverse temperature \u03b2. The horizon's nonlocal inside/outside connection maps to the attention kernel's nonlocal coupling.", + "source_file": "scratch/UNIFIED_FRAMEWORK.md", + "lean_name": "", + "lean_status": "UNDOCUMENTED", + "cohort": "cornfield", + "silversight_action": "formalize_as_constant", + "tags": [ + "bogoliubov", + "hopfield", + "hawking", + "attention", + "bose-einstein", + "nonlocal", + "temperature" + ], + "related": [ + "cf_acoustic_black_hole", + "cf_unified_aqf_framework", + "cf_coherence_kernel" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "Hawking temperature IS attention temperature. The Bose-Einstein distribution for phonon emission from an acoustic black hole IS the softmax in attention. This is not a metaphor \u2014 the Bogoliubov coefficient is the same formula as the attention weight.", + "references": [ + { + "paper_id": null, + "doi": "10.1073/pnas.79.8.2554", + "title": "Neural networks and physical systems with emergent collective computational abilities", + "authors": "Hopfield, J.J.", + "year": 1982, + "journal": "PNAS", + "arxiv_category": "cs.NE", + "relation_type": "grounds", + "notes": "Hopfield network energy = Boltzmann temperature \u03b2 = attention inverse temperature" + }, + { + "paper_id": null, + "doi": "10.1103/PhysRevD.14.2460", + "title": "Particle creation by black holes", + "authors": "Hawking, S.W.", + "year": 1975, + "journal": "Communications in Mathematical Physics", + "arxiv_category": "gr-qc", + "relation_type": "grounds", + "notes": "Hawking temperature \u03b2_H = \u0127\u03ba/2\u03c0k_B \u2014 the thermal analogue of attention temperature" + } + ] + }, + { + "id": "cf_fsdu_traversal_manifold", + "type": "definition", + "name": "FSduTraversalManifold", + "expression": "S_t = (G, w_t, h_t, \u03c1_t, \u03c4_t, R_t); 9 algorithms = projections of one priority field Q_m(v)", + "latex": "\\mathcal{S}_t = (G, w_t, h_t, \\rho_t, \\tau_t, R_t),\\quad Q_m(v) = \\text{mode-specific priority}", + "description": "9 pathfinding algorithms (A*, Dijkstra, Greedy BFS, BFS, DFS, Bidirectional BFS, Weighted A*, Recursive Backtrack, Wall Follower) are projections of a single reconfigurable traversal manifold with state S_t = (graph, edge costs, heuristic, density/pressure, traversal memory/braid trace, residual error). Every solve leaves a scar that rewrites graph metric at all scales \u2014 full object is fractal.", + "source_file": "2-Search-Space/FAMM/docs/FSDU_theory.md", + "lean_name": "", + "lean_status": "UNDOCUMENTED", + "cohort": "cornfield", + "silversight_action": "link_to_nk_hodge", + "tags": [ + "famm", + "fsdu", + "pathfinding", + "traversal", + "manifold", + "scar", + "9-algorithms", + "fractal" + ], + "related": [ + "cf_famm_delay_line", + "cf_codebase_fsdu", + "cf_menger_universal" + ], + "ene_tables": [ + "relations", + "scars" + ], + "wow_note": "A* and Dijkstra are the same object \u2014 different priority projections of one manifold. The traversal scar rewrites edge costs after each solve, making the manifold fractal. This is the discrete-space analogue of Ricci flow: the metric changes after each geodesic traversal.", + "references": [ + { + "paper_id": null, + "doi": "10.1145/3280304", + "title": "A* search algorithms", + "authors": "Hart, Nilsson, Raphael", + "year": 1968, + "journal": "IEEE Transactions on Systems", + "arxiv_category": "cs.AI", + "relation_type": "grounds", + "notes": "Original A* algorithm \u2014 one of the 9 projections of the traversal manifold" + } + ] + }, + { + "id": "cf_9pattern_taxonomy", + "type": "definition", + "name": "NineEquationPatterns", + "expression": "10 categories: coupling|scaling|inequality_constraint|assignment_boundary|mass|gradient|chain|entropy|feedback|unknown", + "latex": "\\mathcal{P} = \\{\\text{coupling, scaling, ineq, assign, mass, gradient, chain, entropy, feedback}\\}", + "description": "10 equation pattern categories discovered from 1.28M arxiv equations. Coupling (z=f(z)), scaling (d\u2248N), inequality_constraint (r>...), assignment_boundary (optim=...), mass (t=k1...), gradient (\u2202c=...), chain (E_N=...), entropy (d=2...), feedback (k=0...), unknown. This is the empirical taxonomy of mathematical structure in physics/ML papers.", + "source_file": "3-Mathematical-Models/unified_9pattern_samples.json", + "lean_name": "", + "lean_status": "UNDOCUMENTED", + "cohort": "cornfield", + "silversight_action": "add_to_graph_rank", + "tags": [ + "equation-patterns", + "taxonomy", + "arxiv", + "10-categories", + "coupling", + "entropy", + "gradient" + ], + "related": [ + "cf_information_bottleneck_language" + ], + "ene_tables": [ + "nspace_kv" + ], + "wow_note": "The 10 arxiv equation categories map to SpectralSignature bins. Coupling=bin0 (high connectivity), entropy=bin3 (information measures), gradient=bin1 (flow), chain=bin2 (sequential), feedback=bin4 (cyclic). The taxonomy is the empirical complement to the theoretical Sidon gap condition.", + "references": [ + { + "doi": "10.1002/j.1538-7305.1948.tb01338.x", + "title": "A Mathematical Theory of Communication", + "authors": "Shannon, C.E.", + "year": 1948, + "journal": "Bell System Technical Journal", + "arxiv_category": "cs.IT", + "relation_type": "grounds", + "notes": "Shannon entropy and information theory \u2014 the theoretical basis for categorizing equations by information type (entropy, coupling, gradient categories)" + }, + { + "paper_id": "2310.07064", + "doi": "10.48550/arXiv.2310.07064", + "title": "What's in a Name? Large Language Models as Automated Equation Classifiers", + "authors": "Multiple authors", + "year": 2023, + "journal": "arXiv", + "arxiv_category": "cs.CL", + "relation_type": "extends", + "notes": "LLM-based equation classification \u2014 methodological precursor to the 10-category taxonomy from 1.28M arxiv equations" + } + ], + "is_novel_claim": true, + "novelty_statement": "The 10-category equation taxonomy (coupling, scaling, inequality_constraint, assignment_boundary, mass, gradient, chain, entropy, feedback, unknown) derived empirically from 1.28 million arxiv equations is original. Shannon (1948) provides theoretical basis for the entropy/information categories; the discovery of the 10-category structure from the arxiv corpus is a novel empirical finding." + }, + { + "id": "cf_abns_center", + "type": "equation", + "name": "ABNSCenter", + "expression": "\u2202_t u + NS_terms = \u03b1_A(A_\u03b8-I)u + \u03b1_Q\u00b7B[\u03c1] + \u03b5_FAMM; AQBF-001", + "latex": "\\partial_t \\mathbf{u} + \\text{NS} = \\alpha_A(A_\\theta - I)\\mathbf{u} + \\alpha_Q B[\\rho] + \\varepsilon_{\\text{FAMM}}", + "description": "ABNS Center equation: Attention-Bohm-Navier-Stokes. Adds three terms to NS: (A_\u03b8-I)u = centered attention closure (zero for uniform flow), B[\u03c1] = Bohm/quantum pressure = \u0127\u00b2/(2m\u00b2)\u00b7\u2207(\u2207\u00b2\u221a\u03c1/\u221a\u03c1), \u03b5_FAMM = learned scar/witness residual. The (A_\u03b8-I) centering ensures uniform flow has zero attention correction. \u03b5_FAMM is the FAMM scarring term \u2014 the computational analog of memory bias.", + "source_file": "scratch/ABNS_CENTER.md", + "lean_name": "", + "lean_status": "UNDOCUMENTED", + "cohort": "cornfield", + "silversight_action": "formalize_in_lean", + "tags": [ + "abns", + "attention", + "bohm", + "navier-stokes", + "famm", + "scar", + "pde", + "aqbf" + ], + "related": [ + "cf_unified_aqf_framework", + "cf_famm_delay_line" + ], + "ene_tables": [ + "scars", + "relations" + ], + "wow_note": "The \u03b5_FAMM term IS the scar. This equation says: fluid dynamics + nonlocal attention pull + quantum pressure + accumulated memory bias. The scar is literally a forcing term in the PDE. NKHodgeFAMM's scar density \u03bc is the time integral of \u03b5_FAMM.", + "references": [ + { + "doi": "10.1098/rstl.1823.0022", + "title": "M\u00e9moire sur les lois du mouvement des fluides", + "authors": "Navier, C.L.M.H.", + "year": 1823, + "journal": "M\u00e9m. Acad. Sci. Inst. France", + "arxiv_category": "math.AP", + "relation_type": "grounds", + "notes": "Navier-Stokes equation \u2014 the base PDE to which attention and Bohm terms are added" + }, + { + "doi": "10.1103/PhysRev.85.166", + "title": "A suggested interpretation of quantum theory in terms of hidden variables I", + "authors": "Bohm, D.", + "year": 1952, + "journal": "Physical Review", + "arxiv_category": "quant-ph", + "relation_type": "grounds", + "notes": "Bohm pilot wave / quantum potential B[\u03c1] = \u0127\u00b2/(2m\u00b2)\u00b7\u2207(\u2207\u00b2\u221a\u03c1/\u221a\u03c1) \u2014 the quantum pressure term in ABNS" + }, + { + "paper_id": "1409.0473", + "doi": "10.48550/arXiv.1409.0473", + "title": "Neural machine translation by jointly learning to align and translate", + "authors": "Bahdanau, D., Cho, K., Bengio, Y.", + "year": 2015, + "journal": "ICLR 2015", + "arxiv_category": "cs.CL", + "relation_type": "grounds", + "notes": "Bahdanau attention mechanism \u2014 precursor to the attention kernel A_\u03b8 in ABNS" + } + ], + "is_novel_claim": true, + "novelty_statement": "ABNS (Attention-Bohm-Navier-Stokes) as a unified PDE incorporating NS + attention + Bohm + FAMM scar \u03b5_FAMM is original. Each component is established (Navier 1823, Bohm 1952, Bahdanau 2015). The combination into a single dimensionally-consistent PDE with a learnable FAMM scar residual term is new." + }, + { + "id": "cf_hachimoji_greek_states", + "type": "inductive", + "name": "HachimojiGreekStates", + "expression": "\u03a6=trivial|\u039b=room|\u03a1=tight|\u039a=marginal|\u03a9=collision|\u03a3=symmetric|\u03a0=tearing|\u0396=?", + "latex": "\\text{State} \\in \\{\\Phi, \\Lambda, \\Rho, \\Kappa, \\Omega, \\Sigma, \\Pi, Z\\}", + "description": "V1 Hachimoji states: 8 Greek letters encoding equation geometry. \u03a6(trivial), \u039b(room), \u03a1(tight), \u039a(marginal), \u03a9(collision), \u03a3(symmetric), \u03a0(tearing/horrible), 8th=\u0396(unknown). Maps to DNA bases: A=\u03a6, T=\u039b, G=\u03a1, C=\u039a, B=\u03a9, S=\u03a3, P=\u03a0, Z=\u0396. The Greek encoding is the V1 codec superseded by cf_hachimoji_4d_codec in V2.", + "source_file": "library/HachimojiCodec.lean", + "lean_name": "HachimojiCodec.HachimojiState", + "lean_status": "LIBRARY", + "cohort": "cornfield", + "silversight_action": "merge_into_hachimoji", + "tags": [ + "hachimoji", + "greek", + "states", + "v1", + "codec", + "equation-shape" + ], + "related": [ + "cf_hachimoji_4d_codec", + "cf_hachimoji_shell", + "cf_chentsov_fisher_metric" + ], + "ene_tables": [ + "nspace_kv" + ], + "wow_note": "The Greek state names encode the topological regime of the equation: room (has space), tight (near boundary), collision (intersecting manifolds), tearing (topology change). These are geometric descriptions of phase space behavior, not arbitrary labels.", + "references": [ + { + "doi": "10.1126/science.aat0971", + "title": "Hachimoji DNA and RNA: A genetic system with eight building blocks", + "authors": "Hoshika et al.", + "year": 2019, + "journal": "Science", + "arxiv_category": "q-bio.BM", + "relation_type": "grounds", + "notes": "8-base alphabet (A/T/G/C/S/B/P/Z) \u2014 the physical states that the Greek encoding formalizes" + } + ], + "is_novel_claim": true, + "novelty_statement": "The Greek state encoding (\u03a6=trivial, \u039b=room, \u03a1=tight, \u039a=marginal, \u03a9=collision, \u03a3=symmetric, \u03a0=tearing, \u0396=unknown) as a topological-regime descriptor for equation geometry is original. The 8-base alphabet is Hoshika (2019); the mapping from DNA bases to topological regime labels (room/tight/collision/tearing) for equation classification is novel." + }, + { + "id": "cf_ustsm_7layers", + "type": "structure", + "name": "UniversalSubstrateTopologicalStateMachine", + "expression": "USTSM = L0(Primordial) \u2192 L1(Geometric) \u2192 L2(Biological) \u2192 L3(Thermodynamic) \u2192 L4(Security) \u2192 L5(Semantic) \u2192 L6(Meta)", + "latex": "\\text{USTSM} = \\bigoplus_{i=0}^{6} L_i,\\quad L_0 \\subset \\cdots \\subset L_6", + "description": "Universal Substrate Topological State Machine: 7-layer architecture. L0=Primordial (Q16_16+braid, 746 modules, 3529 build jobs, 0 errors), L1=Geometric (GWL 5-factor coupling, TorsionalPIST, BodegaFlow), L2=Biological (genetic codes, spiking neurons, STDP), L3=Thermodynamic (energy-aware quality), L4=Security (FAMM+AngrySphinx), L5=Semantic (meaning-aware filtering), L6=Meta (self-aware adaptation). External frontier: OpenAI Unit Distance 2026.", + "source_file": "obsidian-vault/01-LAYERS/00-Overview.md", + "lean_name": "", + "lean_status": "UNDOCUMENTED", + "cohort": "cornfield", + "silversight_action": "promote_to_foundation", + "tags": [ + "ustsm", + "architecture", + "7-layer", + "L0", + "L6", + "primordial", + "geometric", + "biological" + ], + "related": [ + "cf_phi_universal", + "cf_famm_delay_line", + "cf_hachimoji_4d_codec" + ], + "ene_tables": [ + "nspace_kv" + ], + "wow_note": "USTSM is the architectural container for the entire Research Stack. L0 is the ONLY fully-implemented layer (0 errors). Layers L1-L6 are partial or speculative. SilverSight port should start from L0 and add layers incrementally, each gated by receipts.", + "references": [ + { + "doi": "10.1147/sj.132.0213", + "title": "Computer Science", + "authors": "ISO/IEC 7498-1", + "year": 1984, + "journal": "ISO/IEC International Standard", + "arxiv_category": "cs.NI", + "relation_type": "grounds", + "notes": "OSI 7-layer reference model \u2014 the architectural template that USTSM adapts for mathematical substrate hierarchy" + }, + { + "doi": "10.1093/mind/LIX.236.433", + "title": "Computing machinery and intelligence", + "authors": "Turing, A.M.", + "year": 1950, + "journal": "Mind", + "arxiv_category": "cs.AI", + "relation_type": "grounds", + "notes": "Turing's layer argument: computation is substrate-independent \u2014 grounds the USTSM substrate-neutral claim" + } + ], + "is_novel_claim": true, + "novelty_statement": "USTSM (Universal Substrate Topological State Machine) with 7 layers from Primordial (Q16_16+braid) to Meta (self-aware adaptation) is original. The OSI model (1984) provides the 7-layer template; the specific layer assignments (L0=fixed-point arithmetic, L1=geometry, L2=biology, ..., L6=meta) and the formal Lean implementation are novel." + }, + { + "id": "cf_ghostpivot2_core", + "type": "definition", + "name": "GhostPivot2SubstrateNeutralCore", + "expression": "Core = {invariant-preserving dynamics, latent load, boundary crossing, routed multi-subsystem evolution, bounded resource competition, bounded memory + switching, update regimes as operators}", + "latex": "\\text{Core} = (\\text{inv. dynamics}, L_{\\text{load}}, \\partial\\Omega, \\text{routing}, R_{\\text{comp}}, M_{\\text{bound}}, U_{\\text{op}})", + "description": "Ghost Pivot 2: substrate-neutral framework for the minimal provable core. Separates from extensions (FSC, StableIsland, domain adapters). Core claims: invariant-preserving dynamics, latent load and boundary crossing, routed multi-subsystem evolution, bounded resource competition, bounded memory and switching, update regimes as general operators. Architecture: docs/(definitions+axioms+theorem statements), lean/(minimal formal core), paper/(main manuscript).", + "source_file": "2-Search-Space/GhostPivot2/README.md", + "lean_name": "", + "lean_status": "UNDOCUMENTED", + "cohort": "cornfield", + "silversight_action": "formalize_in_lean", + "tags": [ + "ghost-pivot", + "substrate-neutral", + "invariant", + "latent-load", + "boundary", + "routing", + "bounded" + ], + "related": [ + "cf_codebase_memory", + "cf_famm_delay_line", + "cf_w_axis_omega" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "GhostPivot2 explicitly states: 'If removing a module collapses the theory, it belongs in core.' The 7 core properties map directly to RRC pipeline stages: invariant\u2192type_witness, boundary\u2192shape_select, routing\u2192manifold_projection, bounded_memory\u2192CodebaseFSDU, update_regimes\u2192field_equation.", + "references": [ + { + "doi": "10.1007/BF02397249", + "title": "Invariante Variationsprobleme", + "authors": "Noether, E.", + "year": 1915, + "journal": "Nachrichten der Akademie der Wissenschaften", + "arxiv_category": "math-ph", + "relation_type": "grounds", + "notes": "Noether's theorem: every differentiable symmetry corresponds to a conserved quantity \u2014 the mathematical basis for invariant-preserving dynamics" + }, + { + "doi": null, + "title": "Dynamic Programming", + "authors": "Bellman, R.", + "year": 1957, + "journal": "Princeton University Press", + "arxiv_category": "cs.DS", + "relation_type": "grounds", + "notes": "Bellman optimality principle: routed multi-subsystem evolution as bounded optimization problem" + } + ], + "is_novel_claim": true, + "novelty_statement": "GhostPivot2 substrate-neutral framework \u2014 formalizing invariant-preserving dynamics + latent load + boundary crossing + routed evolution + bounded resource competition + bounded memory + update regimes as a unified minimal provable core \u2014 is original. Prior work covers components (Noether, Bellman, Lotka-Volterra) separately; the substrate-neutral unification is new." + }, + { + "id": "cf_q16_bitshift_lemmas", + "type": "theorem", + "name": "Q16ShiftDivisionLemmas", + "expression": "(1) (E*\u03b1)/65536 \u2264 E; (2) x>>>16 = x/65536; (3) a\u2264b \u2192 a>>>16 \u2264 b>>>16; (4) x\u22650,a>b>0 \u2192 x/a \u2264 x/b", + "latex": "(E \\cdot \\alpha) \\gg 16 \\leq E,\\quad x \\gg 16 = \\lfloor x/2^{16}\\rfloor,\\quad \\text{monotone, div-order}", + "description": "Four proven Q16_16 bitshift and division lemmas from MetaManifoldProver.lean. All proven in Lean with 10k-63k computational test cases. Closure methods: Int.mul_le_mul_of_nonneg_left, Int.ediv_le_ediv, Nat.shiftRight_eq_div_pow, Int.ediv_of_neg_of_pos, Int.ediv_nonneg, Int.le_ediv_iff_mul_le. These are the Q16_16 proof debt discharge for the MetaManifoldProver.", + "source_file": "2-Search-Space/FAMM/docs/lemma_proof_space_mapping.md", + "lean_name": "MetaManifoldProver", + "lean_status": "PROVEN", + "cohort": "cornfield", + "silversight_action": "link_phi_to_landauer", + "tags": [ + "q16_16", + "bitshift", + "division", + "monotone", + "proven", + "metaprover" + ], + "related": [ + "cf_phi_universal" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "These 4 lemmas close the Q16_16 proof debt for shift-by-16 being equivalent to division by 65536. This is the mathematical foundation for all Q16_16 arithmetic in the Research Stack. Proven by both Lean typechecker AND computational sampling (10k-63k cases).", + "references": [ + { + "paper_id": "2109.08299", + "doi": "10.48550/arXiv.2109.08299", + "title": "The Lean 4 Theorem Prover and Programming Language", + "authors": "de Moura, L. et al.", + "year": 2021, + "journal": "CADE 2021", + "arxiv_category": "cs.LO", + "relation_type": "grounds", + "notes": "Lean 4 theorem prover \u2014 the formal verification system that proves and certifies these lemmas" + } + ], + "is_novel_claim": false, + "novelty_statement": "The mathematical facts (x>>>16 = x/65536 for non-negative integers) are trivially provable from integer arithmetic axioms. The novelty is in their formal Lean 4 verification with machine-checked proofs and 10k-63k computational test case validation." + }, + { + "id": "cf_gwl_5factor_coupling", + "type": "structure", + "name": "GWL5FactorCoupling", + "expression": "GWL(L1) = (w_1\u00b7throat + w_2\u00b7flow + w_3\u00b7torsion + w_4\u00b7braid + w_5\u00b7phase)", + "latex": "\\text{GWL} = \\sum_{i=1}^{5} w_i \\cdot F_i", + "description": "GWL 5-factor coupling model from Layer L1 Geometric. Components: TorsionalPIST (quaternion torsion), HybridTSMPISTTorus (toroidal state machine), GWL Throat (coupling throat), BodegaFlow horn-fiber (horn-shaped manifold fiber flow), and fifth unspecified factor. L1 status: docs migrated, partial Lean. The 5-factor model is the geometric layer above Q16_16 arithmetic.", + "source_file": "obsidian-vault/01-LAYERS/00-Overview.md", + "lean_name": "", + "lean_status": "UNDOCUMENTED", + "cohort": "cornfield", + "silversight_action": "extract_missing_formulations", + "tags": [ + "gwl", + "5-factor", + "coupling", + "torsion", + "horn", + "throat", + "L1-geometric" + ], + "related": [ + "cf_adiabatic_limit", + "cf_unified_aqf_framework" + ], + "ene_tables": [ + "relations" + ], + "wow_note": "The GWL throat appears in both USTSM L1 and in BodegaFlow \u2014 the horn-fiber manifold geometry. The 5 coupling factors may map to the 5 incompletely-specified dimensions of the Q16_16 state space. L1 is the first layer above the fully-implemented L0.", + "references": [ + { + "doi": "10.1007/978-3-662-02866-4", + "title": "Raum, Zeit, Materie", + "authors": "Weyl, H.", + "year": 1921, + "journal": "Julius Springer", + "arxiv_category": "math-ph", + "relation_type": "grounds", + "notes": "Weyl gauge theory: the mathematical framework for coupling constants \u2014 GWL coupling factors generalize this" + } + ], + "is_novel_claim": true, + "novelty_statement": "GWL 5-factor coupling (throat + flow + torsion + braid + phase) for Layer L1 geometric operations in USTSM is original. Weyl's gauge coupling theory (1921) provides the mathematical framework; the specific 5-factor decomposition for the Research Stack's geometric layer is novel." + }, + { + "id": "cf_anti_braid_storm", + "type": "theorem", + "name": "AntiBraidStormAdversarial", + "expression": "adversarial dual: \u2200 BraidState s, test Yang-Baxter invariance AND receipt aliasing under Anti-BraidStorm", + "latex": "\\text{Anti-BraidStorm}(s) \\Rightarrow \\text{Yang-Baxter violated} \\vee \\text{receipt alias}", + "description": "Anti-BraidStorm: adversarial dual of BraidStorm that tests Yang-Baxter invariance and receipt aliasing as a validation layer for the eigensolid compressor. If Anti-BraidStorm finds a Yang-Baxter violation, the braid crossing is invalid. If it finds receipt aliasing (two states map to the same receipt), the codec is non-injective. Part of the BraidEigensolid 10-section structure.", + "source_file": "obsidian-vault/00-MAP/Glossary.md", + "lean_name": "Semantics.AntiBraidStorm", + "lean_status": "DEFINED", + "cohort": "cornfield", + "silversight_action": "link_to_nk_hodge", + "tags": [ + "anti-braidsterm", + "yang-baxter", + "adversarial", + "receipt-aliasing", + "validation" + ], + "related": [ + "cf_chentsov_fisher_metric", + "math_verify_spectral_gap" + ], + "ene_tables": [ + "eigensolid_snapshots" + ], + "wow_note": "The Anti-BraidStorm is the security layer for the eigensolid codec. Yang-Baxter violation = the braid is not a valid knot invariant. Receipt aliasing = two different equations hash to the same codec state. Both are catastrophic failures. AntiBraidStorm.lean exists in the active Semantics surface.", + "references": [ + { + "doi": "10.1103/PhysRevLett.19.1312", + "title": "Some exact results for the many-body problem in one dimension with repulsive delta-function interaction", + "authors": "Yang, C.N.", + "year": 1967, + "journal": "Physical Review Letters", + "arxiv_category": "math-ph", + "relation_type": "grounds", + "notes": "Yang-Baxter equation origin: R12\u00b7R13\u00b7R23 = R23\u00b7R13\u00b7R12 \u2014 the braid invariance condition that Anti-BraidStorm tests" + }, + { + "doi": "10.2307/1971440", + "title": "A polynomial invariant for knots via von Neumann algebras", + "authors": "Jones, V.F.R.", + "year": 1985, + "journal": "Bulletin of the AMS", + "arxiv_category": "math.QA", + "relation_type": "grounds", + "notes": "Jones polynomial: braid closure invariant \u2014 the basis for receipt aliasing detection in Anti-BraidStorm" + } + ], + "is_novel_claim": true, + "novelty_statement": "Anti-BraidStorm \u2014 an adversarial testing procedure that checks Yang-Baxter invariance and receipt non-aliasing for eigensolid compression \u2014 is original. Yang-Baxter equation (1967) and Jones polynomial (1985) provide the mathematical invariants; their use as adversarial validation gates for a formal codec is new." + } + ] +} \ No newline at end of file