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docs: merge Research Stack CITATION.cff with implementation status
Ported 37 implemented references from Research Stack. Commented out 11 not-yet-implemented references as TODOs. Active references: 51 (14 existing + 37 ported) Commented TODOs: 11 (uncomment when modules are ported) Sections: - Existing SilverSight references (14) - Implemented references ported from Research Stack (37) - TODO: Not yet implemented in SilverSight (11, commented)
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CITATION.cff
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CITATION.cff
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@ -1,77 +1,27 @@
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cff-version: 1.2.0
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message: "If you use this software, please cite it as below."
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type: software
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title: "SilverSight: Deterministic Equation Search and Classification"
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abstract: >-
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SilverSight is a deterministic equation search and classification system
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built on chaos game theory, Sidon set addressing, Fisher information geometry,
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and Lean-backed formal semantics. It provides a minimal invariant core
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(Hachimoji states, AVM transition semantics, TIC axiom) and a library-method
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architecture for fixed-point computation, braid eigensolid compression, and
|
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universal mathematical expression encoding. The repository ports proven
|
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concepts from Research Stack (OTOM) into a hardened, no-Float compute boundary.
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authors:
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- family-names: "Schneider"
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given-names: "Brandon"
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alias: "allaunthefox"
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- name: "SilverSight Contributors"
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repository-code: "https://github.com/allaunthefox/SilverSight"
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url: "https://github.com/allaunthefox/SilverSight"
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date-released: 2026-06-21
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license: MIT
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keywords:
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- deterministic-search
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- equation-classification
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- lean4
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- formal-verification
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- fixed-point-arithmetic
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- q16_16
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- sidon-sets
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- braid-eigensolid
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- fisher-information-geometry
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- hachimoji-states
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- avm-semantics
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- reproducible-research
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preferred-citation:
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type: software
|
||||
title: "SilverSight: Deterministic Equation Search and Classification"
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authors:
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- family-names: "Schneider"
|
||||
given-names: "Brandon"
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alias: "allaunthefox"
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- name: "SilverSight Contributors"
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repository-code: "https://github.com/allaunthefox/SilverSight"
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url: "https://github.com/allaunthefox/SilverSight"
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date-released: 2026-06-21
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license: MIT
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references:
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- type: software
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title: "Research Stack (OTOM)"
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authors:
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- family-names: "Schneider"
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given-names: "Brandon"
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alias: "allaunthefox"
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- name: "Research Stack Contributors"
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repository-code: "https://github.com/allaunthefox/Research-Stack"
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url: "https://github.com/allaunthefox/Research-Stack"
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date-released: 2026-05-08
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license: Apache-2.0
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notes: "Parent research repository (https://github.com/allaunthefox/Research-Stack). SilverSight ports proven Lean modules (`Semantics.FixedPoint`, `Semantics.SidonSets`, `Semantics.SieveLemmas`, `Semantics.InteractionGraphSidon`, `Semantics.BraidEigensolid`, `Semantics.BraidSpherionBridge`, etc.), agent contracts, and the no-Float compute doctrine from this source."
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date-released: "2026-05-08"
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license: "Apache-2.0"
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notes: "Parent research repository (https://github.com/allaunthefox/Research-Stack). SilverSight ports proven Lean modules (`Semantics.FixedPoint`, `Semantics.SidonSets`, `Semantics.SieveLemmas`, `Semantics.InteractionGraphSidon`, `Semantics.BraidEigensolid`, `Semantics.BraidSpherionBridge`, etc.), agent co"
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- type: software
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title: "GP_ELITE: Régression symbolique par programmation génétique"
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authors:
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- name: "Sabri Hakou"
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version: 0.1.0
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date-released: 2026-06-13
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license: MIT
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version: "0.1.0"
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date-released: "2026-06-13"
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license: "MIT"
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repository-code: "https://github.com/ariel95500-create/gp-elite"
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notes: "Inspired SilverSight's native symbolic regression design. GP-ELITE uses genetic programming with asymmetric island model, BIC fitness, linear scaling (Keijzer 2003), ε-lexicase selection, and stigmergic memory. SilverSight reimplements these concepts using existing infrastructure: HachimojiCodec classification, chaos game search, spectral profiles, and QUBO optimization. See `docs/SYMBOLIC_REGRESSION_DESIGN.md`."
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notes: "Inspired SilverSight's native symbolic regression design. GP-ELITE uses genetic programming with asymmetric island model, BIC fitness, linear scaling (Keijzer 2003), ε-lexicase selection, and stigmergic memory. SilverSight reimplements these concepts using existing infrastructure: HachimojiCodec cla"
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# NOTE: The following four references are domain sources used by
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# `formal/PVGS_DQ_Bridge/` and `formal/BindingSite/`. They are recorded as
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# `unpublished` until DOIs, arXiv IDs, or journal pages are confirmed.
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- type: unpublished
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authors:
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- family-names: "Giani"
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@ -81,8 +31,9 @@ references:
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- family-names: "Conti"
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given-names: "C."
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title: "Photon-Varied Gaussian States"
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year: 2025
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year: "2025"
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notes: "Binds to Research Stack `Semantics.PVGS_DQ_Bridge` → SilverSight `formal/PVGS_DQ_Bridge/`; preprint identifier pending confirmation."
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- type: unpublished
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authors:
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- family-names: "Chabaud"
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@ -90,33 +41,33 @@ references:
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- family-names: "Mehraban"
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given-names: "S."
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title: "Stellar representation of non-Gaussian quantum states"
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year: 2022
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year: "2022"
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notes: "Binds to Research Stack `Semantics.PVGS_DQ_Bridge` → SilverSight `formal/PVGS_DQ_Bridge/`; full citation details pending DOI or arXiv ID."
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|
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- type: unpublished
|
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authors:
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- family-names: "Pizzimenti"
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given-names: "C."
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- family-names: "et al."
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title: "Wigner negativity of superpositions"
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year: 2024
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year: "2024"
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notes: "Binds to Research Stack `Semantics.BindingSite` / `Semantics.PVGS_DQ_Bridge` → SilverSight `formal/BindingSite/`; full citation details pending DOI or arXiv ID."
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- type: unpublished
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authors:
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- family-names: "Wassner"
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given-names: "M."
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- family-names: "et al."
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title: "Single quadrature noise tomography"
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year: 2025
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year: "2025"
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notes: "Binds to Research Stack `Semantics.PVGS_DQ_Bridge` → SilverSight `formal/PVGS_DQ_Bridge/`; full citation details pending DOI or arXiv ID."
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# ── Conceptual bindings ported from Research Stack ─────────────────────────
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- type: thesis
|
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title: "Pascal's Triangle, Pascal's Pyramid, and the Trinomial Triangle"
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authors:
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- family-names: "Saucedo"
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given-names: "Antonio Jr."
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date-published: 2019-06
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date-published: "2019-06"
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institution:
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name: "California State University, San Bernardino"
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collection-title: "Electronic Theses, Projects, and Dissertations"
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|
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@ -130,10 +81,10 @@ references:
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given-names: "R."
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- family-names: "Groot"
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given-names: "R. D."
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date-published: 2009-12
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doi: 10.1063/1.3276799
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date-published: "2009-12"
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doi: "10.1063/1.3276799"
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journal: "The Journal of Chemical Physics"
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notes: "Binds to Research Stack `Semantics.BraidEigensolid` / `Semantics.BraidSpherionBridge` / `Semantics.BaselineComparison` → SilverSight `formal/CoreFormalism/BraidEigensolid.lean` / `formal/CoreFormalism/BraidSpherionBridge.lean`; anchor paper for polydisperse close-packing theory used in eigensolid convergence proofs."
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notes: "Binds to Research Stack `Semantics.BraidEigensolid` / `Semantics.BraidSpherionBridge` / `Semantics.BaselineComparison` → SilverSight `formal/CoreFormalism/BraidEigensolid.lean` / `formal/CoreFormalism/BraidSpherionBridge.lean`; anchor paper for polydisperse close-packing theory used in eigensolid co"
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- type: article
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title: "Fractionation effects in phase equilibria of polydisperse hard-sphere colloids"
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@ -142,8 +93,8 @@ references:
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given-names: "M."
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- family-names: "Sollich"
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given-names: "P."
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date-published: 2004-10
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doi: 10.1103/physreve.70.041410
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||||
date-published: "2004-10"
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doi: "10.1103/physreve.70.041410"
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journal: "Physical Review E"
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notes: "Binds to Research Stack `Semantics.BraidEigensolid` (meta-solid concept captured in ContextStream node `e967f515-...`) → SilverSight `formal/CoreFormalism/BraidEigensolid.lean`; terminal polydispersity ~14% underpins the meta-solid 1/7 mixing threshold (one complete Sidon doubling step)."
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|
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@ -154,8 +105,8 @@ references:
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given-names: "V."
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- family-names: "Tallarek"
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given-names: "U."
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date-published: 2014
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doi: 10.1039/c3sm52959b
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date-published: "2014"
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doi: "10.1039/c3sm52959b"
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journal: "Soft Matter"
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notes: "Binds to Research Stack `Semantics.BraidEigensolid` → SilverSight `formal/CoreFormalism/BraidEigensolid.lean`; definitive random-close-packing limits for monodisperse (~0.64) and polydisperse spheres used in eigensolid packing-bound claims."
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@ -166,8 +117,8 @@ references:
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given-names: "D."
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- family-names: "Bolhuis"
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given-names: "P."
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date-published: 1999
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||||
doi: 10.1103/physreve.59.618
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date-published: "1999"
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doi: "10.1103/physreve.59.618"
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journal: "Physical Review E"
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notes: "Binds to Research Stack `Semantics.BraidEigensolid` / `Semantics.BaselineComparison` → SilverSight `formal/CoreFormalism/BraidEigensolid.lean`; fractionating phase behavior of polydisperse hard spheres used in braid/meta-solid phase-transition fixtures."
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@ -180,7 +131,7 @@ references:
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given-names: "Kevin"
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- family-names: "Manchester"
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given-names: "Zachary"
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date-published: 2026-05
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date-published: "2026-05"
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url: "https://arxiv.org/abs/2605.17913"
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notes: "Binds to Research Stack `Semantics.FixedPoint` (inverse-proof machinery in `Semantics.Q16InverseProof`) → SilverSight `formal/CoreFormalism/FixedPoint.lean`; differentiable primal-dual IPM with bounded KKT systems for low-precision / fixed-point arithmetic, justifying the no-Float compute boundary."
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@ -189,20 +140,9 @@ references:
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authors:
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- family-names: "Kritchevsky"
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given-names: "Alex"
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date-published: 2026-05-25
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date-published: "2026-05-25"
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url: "https://alexkritchevsky.com/2026/05/25/everything-is-logarithms.html"
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notes: >-
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Binds to SilverSight `formal/CoreFormalism/HachimojiLUT.lean` (PhaseCircle,
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phaseEmbed) and `formal/CoreFormalism/ChentsovFinite.lean` (Fisher metric
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uniqueness). Core claim: logarithms are coordinate-free objects; units
|
||||
emerge from ratios (log N / log 2), and dim(U⊗V) = dim(U)×dim(V) mirrors
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the additive structure of log. The multiplicative-to-additive isomorphism
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underpins the phase-circle encoding (ℤ/360ℤ as an additive group of
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logarithmic phase steps) and the Q16_16 entropy estimator (entropy_q16
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computes log₂ probabilities in integer arithmetic). The coordinate-free
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framing also grounds Chentsov uniqueness: the Fisher metric is invariant
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under sufficient statistics, i.e., under the natural logarithmic
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re-parameterisation of probability families.
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notes: "Binds to SilverSight `formal/CoreFormalism/HachimojiLUT.lean` (PhaseCircle, phaseEmbed) and `formal/CoreFormalism/ChentsovFinite.lean` (Fisher metric uniqueness). Core claim: logarithms are coordinate-free objects; units emerge from ratios (log N / log 2), and dim(U⊗V) = dim(U)×dim(V) mirrors the a"
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- type: article
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||||
title: "Stabilizing Recurrent Dynamics for Test-Time Scalable Latent Reasoning in Looped Language Models"
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|
|
@ -221,6 +161,661 @@ references:
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given-names: "Lan-Zhe"
|
||||
- family-names: "Li"
|
||||
given-names: "Yu-Feng"
|
||||
date-published: 2026-05
|
||||
date-published: "2026-05"
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||||
url: "https://arxiv.org/abs/2605.26733"
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||||
notes: "Binds to Research Stack `Semantics.AVMIsa.*` / `Semantics.Run` → SilverSight `Core/SilverSightCore.lean` AVM transition function; STARS regularizes spectral radius of the Jacobian using power iterations with JVPs, relevant to recurrent / looped AVM search dynamics."
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# ── Implemented references ported from Research Stack ──────────────
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|
||||
- type: article
|
||||
title: "Brownian dynamics of polydisperse colloidal hard spheres: Equilibrium structures and random close packings"
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authors:
|
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- family-names: "Schaertl"
|
||||
given-names: "W."
|
||||
- family-names: "Sillescu"
|
||||
given-names: "H."
|
||||
date-published: "1994"
|
||||
doi: "10.1007/bf02183148"
|
||||
journal: "Journal of Statistical Physics"
|
||||
notes: "Early polydisperse hard-sphere BD simulation."
|
||||
|
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- type: article
|
||||
title: "On the jamming phase diagram for frictionless hard-sphere packings"
|
||||
authors:
|
||||
- family-names: "Baranau"
|
||||
given-names: "V."
|
||||
- family-names: "Tallarek"
|
||||
given-names: "U."
|
||||
date-published: "2014"
|
||||
doi: "10.1039/c4sm01439a"
|
||||
journal: "Soft Matter"
|
||||
notes: "Jamming phase diagram for frictionless spheres."
|
||||
|
||||
- type: article
|
||||
title: "Dense packing of binary and polydisperse hard spheres"
|
||||
authors:
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- family-names: "Santiso"
|
||||
given-names: "E."
|
||||
- family-names: "Müller"
|
||||
given-names: "E. A."
|
||||
date-published: "2002"
|
||||
doi: "10.1080/00268970210125313"
|
||||
journal: "Molecular Physics"
|
||||
notes: "Packing of binary/tridisperse/distributed sphere mixtures."
|
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|
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- type: article
|
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title: "Freezing line of polydisperse hard spheres via direct-coexistence simulations"
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||||
authors:
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- family-names: "Castagnède"
|
||||
given-names: "A."
|
||||
- family-names: "Filion"
|
||||
given-names: "L."
|
||||
- family-names: "Smallenburg"
|
||||
given-names: "F."
|
||||
date-published: "2025"
|
||||
doi: "10.1063/5.0281621"
|
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journal: "The Journal of Chemical Physics"
|
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notes: "Recent direct-coexistence simulation of polydisperse freezing line."
|
||||
|
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- type: article
|
||||
title: "Frenkel's entropy-exchange mechanism in monodisperse, nearly hard-sphere colloids: minimal perturbations to access fluid-crystal coexistence"
|
||||
authors:
|
||||
- family-names: "Wang"
|
||||
given-names: "J. G."
|
||||
- family-names: "Dhumal"
|
||||
given-names: "U."
|
||||
- family-names: "Zakhari"
|
||||
given-names: "M. E. A."
|
||||
- family-names: "Zia"
|
||||
given-names: "R."
|
||||
date-published: "2025"
|
||||
doi: "10.1017/jfm.2026.11287"
|
||||
journal: "Journal of Fluid Mechanics"
|
||||
notes: "Entropy-exchange mechanism to access monodisperse hard-sphere fluid-crystal coexistence."
|
||||
|
||||
- type: article
|
||||
title: "The elusive fluid-and-crystal coexistence state in simulations of monodisperse, hard-sphere colloids"
|
||||
authors:
|
||||
- family-names: "Wang"
|
||||
given-names: "J. G."
|
||||
- family-names: "Dhumal"
|
||||
given-names: "U."
|
||||
- family-names: "Zakhari"
|
||||
given-names: "M. E. A."
|
||||
- family-names: "Zia"
|
||||
given-names: "R."
|
||||
date-published: "2024"
|
||||
doi: "10.1002/aic.70275"
|
||||
journal: "AIChE Journal"
|
||||
notes: "Elusive nature of unbiased monodisperse hard-sphere coexistence simulation."
|
||||
|
||||
- type: article
|
||||
title: "Local composition fluctuations act as precursors for crystal nucleation in polydisperse hard spheres"
|
||||
authors:
|
||||
- family-names: "De Jager"
|
||||
given-names: "M."
|
||||
- family-names: "Castagnède"
|
||||
given-names: "A."
|
||||
- family-names: "Smallenburg"
|
||||
given-names: "F."
|
||||
- family-names: "Filion"
|
||||
given-names: "L."
|
||||
date-published: "2025"
|
||||
journal: "arXiv"
|
||||
notes: "Composition fluctuation precursors in polydisperse nucleation."
|
||||
|
||||
- type: article
|
||||
title: "Rheology and structure of polydisperse three-dimensional packings of spheres"
|
||||
authors:
|
||||
- family-names: "Cantor"
|
||||
given-names: "D."
|
||||
- family-names: "Azéma"
|
||||
given-names: "É."
|
||||
- family-names: "Sornay"
|
||||
given-names: "P."
|
||||
- family-names: "Radjai"
|
||||
given-names: "F."
|
||||
date-published: "2018"
|
||||
doi: "10.1103/physreve.98.052910"
|
||||
journal: "Physical Review E"
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||||
notes: "Shear strength nearly unchanged despite microstructural differences in polydisperse packings."
|
||||
|
||||
- type: article
|
||||
title: "Impact of polydispersity and confinement on diffusion in hydrodynamically interacting colloidal suspensions"
|
||||
authors:
|
||||
- family-names: "Gonzalez"
|
||||
given-names: "E."
|
||||
- family-names: "Aponte-Rivera"
|
||||
given-names: "C."
|
||||
- family-names: "Zia"
|
||||
given-names: "R."
|
||||
date-published: "2021"
|
||||
doi: "10.1017/jfm.2021.563"
|
||||
journal: "Journal of Fluid Mechanics"
|
||||
notes: "Polydispersity + confinement effect on colloidal diffusion."
|
||||
|
||||
- type: article
|
||||
title: "Percus-Yevick structure factors made simple"
|
||||
authors:
|
||||
- family-names: "Botet"
|
||||
given-names: "R."
|
||||
- family-names: "Kwok"
|
||||
given-names: "S."
|
||||
- family-names: "Cabane"
|
||||
given-names: "B."
|
||||
date-published: "2020"
|
||||
doi: "10.1107/s1600576720014041"
|
||||
journal: "Journal of Applied Crystallography"
|
||||
notes: "Simplified PY structure factors for monodisperse/polydisperse fluids."
|
||||
|
||||
- type: thesis
|
||||
title: "Microstructure and macroscopic properties of polydisperse systems of hard spheres"
|
||||
authors:
|
||||
- family-names: "Ogarko"
|
||||
given-names: "V."
|
||||
date-published: "2014"
|
||||
doi: "10.3990/1.9789036536691"
|
||||
institution:
|
||||
name: "University of Twente"
|
||||
notes: "Polydisperse hard-sphere EOS, moments, glassy regime."
|
||||
|
||||
- type: article
|
||||
title: "The plane-wall effect on monodisperse and polydisperse sphere packings"
|
||||
authors:
|
||||
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journal: "Powder Technology"
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notes: "Wall effects in monodisperse vs polydisperse packings."
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title: "Random packing fraction of binary similar particles: Onsager's model revisited"
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title: "Long-Range Superconducting Transition Limited by Phase Slip or Vortex Glass Phase in SmFe1-xCoxAsO Polycrystalline Thin Films"
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title: "Vortex-glass transition and vortex pinning behavior in three-dimensional NbTiN epitaxial films"
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notes: "First-order transitions in ferromagnetic superconductor domain phases."
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|
||||
# ── TODO: Not yet implemented in SilverSight ────────────────────────
|
||||
# Uncomment when modules are ported from Research Stack.
|
||||
|
||||
# - type: thesis
|
||||
# title: "Addressing Rural Mental Health Crises: An Alternative to Police"
|
||||
# authors:
|
||||
# - family-names: "Weatheral-block"
|
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# given-names: "Faith Ann"
|
||||
# date-published: "2024-05"
|
||||
# institution:
|
||||
# name: "California State University, San Bernardino"
|
||||
# collection-title: "Electronic Theses, Projects, and Dissertations"
|
||||
# url: "https://scholarworks.lib.csusb.edu/etd/1957"
|
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# notes: "Exploratory qualitative social-work project for rural crisis-response domain fixtures and route-token provenance; not evidence for quantitative safety or formal claims."
|
||||
|
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# - type: article
|
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# title: "Effects of Polydispersity on Structuring and Rheology in Flowing Suspensions"
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# authors:
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# - family-names: "Rosenbaum"
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# given-names: "E."
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# - family-names: "Massoudi"
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# - family-names: "Dayal"
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# date-published: "2019"
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# journal: "Journal of Applied Mechanics"
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# notes: "Shear-induced ordering suppressed by small polydispersity."
|
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# - type: article
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# title: "Lattice-Boltzmann simulations of low-Reynolds-number flow past mono- and bidisperse arrays of spheres: results for the permeability and drag force"
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# authors:
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# - family-names: "van der Hoef"
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# given-names: "M. A."
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# - family-names: "Beetstra"
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# given-names: "R."
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# journal: "Journal of Fluid Mechanics"
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# notes: "Drag force changes up to 5× in bidisperse arrays."
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# - type: article
|
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# title: "Orbital glass in HTSC: a new state of condensed matter"
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# authors:
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# - family-names: "Kusmartsev"
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# given-names: "F."
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# date-published: "1992"
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# doi: "10.1007/bf00620505"
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# journal: "Journal of Superconductivity"
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# notes: "Orbital-glass state from frustrated Josephson loops in granular HTSC; Meissner disappearance at low fields."
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# - type: article
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# title: "Paramagnetic Meissner effect and related dynamical phenomena"
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# journal: "Physics Reports"
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# notes: "Review of paramagnetic Meissner effect in granular Bi-2212."
|
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# - type: article
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# title: "Fragile-to-strong glass transition in two-dimensional vortex liquids"
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# authors:
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# journal: "Physical Review Research"
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# notes: "Fragile-to-strong glass transition in 2D vortex liquids."
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# - type: article
|
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# title: "Unveiling of Bragg glass to vortex glass transition by an ac driving force in a single crystal of Yb3Rh4Sn13"
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# authors:
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# journal: "Superconductor Science and Technology"
|
||||
# notes: "Material-specific H* ~4 kOe for BG-VG transition in Yb3Rh4Sn13."
|
||||
|
||||
# - type: article
|
||||
# title: "Paramagnetic Meissner effect in YBa2Cu3O7/La0.7Ca0.3MnO3 superlattices"
|
||||
# authors:
|
||||
# - family-names: "Torre"
|
||||
# given-names: "M. A. L. L."
|
||||
# - family-names: "Peña"
|
||||
# given-names: "V."
|
||||
# - family-names: "Sefrioui"
|
||||
# given-names: "Z."
|
||||
# date-published: "2006"
|
||||
# doi: "10.1103/physrevb.73.052503"
|
||||
# journal: "Physical Review B"
|
||||
# notes: "PME in YBCO/LCMO superlattices with granular manganite layers."
|
||||
|
||||
# - type: article
|
||||
# title: "Critical currents at the Bragg glass to vortex glass transition"
|
||||
# authors:
|
||||
# - family-names: "Hernández"
|
||||
# given-names: "A. D."
|
||||
# - family-names: "Domínguez"
|
||||
# given-names: "D."
|
||||
# date-published: "2003"
|
||||
# doi: "10.1103/physrevlett.92.117002"
|
||||
# journal: "Physical Review Letters"
|
||||
# notes: "Simulated first-order BG-VG transition with critical current signature."
|
||||
|
||||
# - type: article
|
||||
# title: "Second magnetization peak, rhombic-to-square Bragg vortex glass transition, and intersecting magnetic hysteresis curves in overdoped BaFe2(As1−xPx)2 single crystals"
|
||||
# authors:
|
||||
# - family-names: "Miu"
|
||||
# given-names: "L."
|
||||
# - family-names: "Ionescu"
|
||||
# given-names: "A."
|
||||
# - family-names: "Miu"
|
||||
# given-names: "D."
|
||||
# date-published: "2020"
|
||||
# doi: "10.1038/s41598-020-74156-z"
|
||||
# journal: "Scientific Reports"
|
||||
# notes: "SMP and rhombic-square Bragg glass transition."
|
||||
|
||||
# - type: article
|
||||
# title: "Vortex phase diagram in 12442-type RbCa2Fe4As4F2 single crystal revealed by magneto-transport and magnetization measurements"
|
||||
# authors:
|
||||
# - family-names: "Xing"
|
||||
# given-names: "X."
|
||||
# - family-names: "Yi"
|
||||
# given-names: "X."
|
||||
# - family-names: "Li"
|
||||
# given-names: "M."
|
||||
# date-published: "2020"
|
||||
# doi: "10.1088/1361-6668/abb35f"
|
||||
# journal: "Superconductor Science and Technology"
|
||||
# notes: "Vortex slush and intermediate regimes between VG and VL."
|
||||
|
|
|
|||
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Reference in a new issue