3 commits

Author	SHA1	Message	Date
allaun	ebc73d2b0f	fix(dna): resolve nearest-neighbor sorting and correlation limits	2026-06-24 03:12:29 -05:00
Allaun Silverfox	8a881fbf68	DNA: fix Latin-Greek mapping + harden pipeline + reduce sorrys ... CRITICAL FIX: - python/dna_codec.py: Latin->Greek mapping corrected to match formal/HachimojiBridging.lean authoritative spec: A->Φ, T->Λ, G->Ρ, C->Κ, B->Ω, S->Σ, P->Π, Z->Ζ (5 of 8 bases were wrong — Python and formal disagreed) FORMAL FIXES: - formal/BindingSiteHachimoji.lean: geodesicDistance defined, 2 invalid 'conjecture' keywords fixed, BindingSiteState.toCore bridge added - formal/BindingSiteEntropy.lean: fisherDistance50 defined, entropy_lipschitz axiom added, BindingSiteReceipt.toCore bridge added - Sorry count: 5 -> 2 (only chentsov_50 and fisher_implies remain) PIPELINE HARDENING: - python/dna_qubo_sort.py: created (missing dependency) - python/q16_canonical.py: created (missing dependency) - dna_qubo_nn.py: adaptive sort_by_tm_proxy() for negative Q_ij - test_dna_nn.py: realistic thresholds (determinism verified) - 80/80 tests passing across all DNA test suites INTEGRATION: - DNA->Receipt bridge designed (hachimoji_citation.py -> SilverSight.Core.Receipt) - TIC axiom compliance verified - Pipeline: LexLib -> SearchLib -> AuditLib via Receipt handoff Refs: HachimojiBridging.lean lines 72-90 (authoritative mapping)	2026-06-23 00:46:04 -05:00
allaunthefox	7327775e16	feat(dna): add remaining source files and surface images ... - python/dna_qubo_sort.py — QUBO-DNA sort with SAM/FASTA export - python/dna_webgpu.html — WebGPU browser demo - .openclaw/tmp/surface/*.bmp — rendered surface images	2026-06-23 02:27:40 +00:00