"""
phi — SilverSight Equation-to-DNA Φ Encoding Pipeline

Independent modules, each reusable without the others:

  charclass    Layer 1: 8-class byte histogram → Δ₇
  ast_parse    Layer 3: AST parsing → τ and δ distributions
  consistency  Layer 4: 6 consistency rules → ADMIT/QUARANTINE
  embed        Core Φ: (F, τ, δ) → 30-base hachimoji DNA sequence
  output       FASTQ, Adleman graph, PCR primer protocol

Usage:
    from phi import encode_phi
    result = encode_phi("d_F(p,q) = 2*arccos(sum(sqrt(p_i*q_i)))")
    print(result["dna_sequence"])
"""

from .embed import encode_phi
from .output import to_fastq, to_adleman_graph, design_filtering_protocol, PRIMER_DESIGN
from .charclass import compute_F
from .ast_parse import compute_tau, compute_delta
from .consistency import check_consistency, CONSISTENCY_RULES