cff-version: "1.2.0" message: "When using this repository, please cite the Research Stack" references: - type: software title: "Research Stack (OTOM)" authors: - family-names: "Schneider" given-names: "Brandon" - name: "Research Stack Contributors" repository-code: "https://github.com/allaunthefox/Research-Stack" url: "https://github.com/allaunthefox/Research-Stack" date-released: "2026-05-08" license: "Apache-2.0" notes: "Parent research repository (https://github.com/allaunthefox/Research-Stack). SilverSight ports proven Lean modules (`Semantics.FixedPoint`, `Semantics.SidonSets`, `Semantics.SieveLemmas`, `Semantics.InteractionGraphSidon`, `Semantics.BraidEigensolid`, `Semantics.BraidSpherionBridge`, etc.), agent co" - type: software title: "GP_ELITE: Régression symbolique par programmation génétique" authors: - name: "Sabri Hakou" version: "0.1.0" date-released: "2026-06-13" license: "MIT" repository-code: "https://github.com/ariel95500-create/gp-elite" notes: "Inspired SilverSight's native symbolic regression design. GP-ELITE uses genetic programming with asymmetric island model, BIC fitness, linear scaling (Keijzer 2003), ε-lexicase selection, and stigmergic memory. SilverSight reimplements these concepts using existing infrastructure: HachimojiCodec cla" - type: unpublished authors: - family-names: "Giani" given-names: "A." - family-names: "Win" given-names: "S." - family-names: "Conti" given-names: "C." title: "Photon-Varied Gaussian States" year: "2025" notes: "Binds to Research Stack `Semantics.PVGS_DQ_Bridge` → SilverSight `formal/PVGS_DQ_Bridge/`; preprint identifier pending confirmation." - type: unpublished authors: - family-names: "Chabaud" given-names: "U." - family-names: "Mehraban" given-names: "S." title: "Stellar representation of non-Gaussian quantum states" year: "2022" notes: "Binds to Research Stack `Semantics.PVGS_DQ_Bridge` → SilverSight `formal/PVGS_DQ_Bridge/`; full citation details pending DOI or arXiv ID." - type: unpublished authors: - family-names: "Pizzimenti" given-names: "C." - family-names: "et al." title: "Wigner negativity of superpositions" year: "2024" notes: "Binds to Research Stack `Semantics.BindingSite` / `Semantics.PVGS_DQ_Bridge` → SilverSight `formal/BindingSite/`; full citation details pending DOI or arXiv ID." - type: unpublished authors: - family-names: "Wassner" given-names: "M." - family-names: "et al." title: "Single quadrature noise tomography" year: "2025" notes: "Binds to Research Stack `Semantics.PVGS_DQ_Bridge` → SilverSight `formal/PVGS_DQ_Bridge/`; full citation details pending DOI or arXiv ID." - type: thesis title: "Pascal's Triangle, Pascal's Pyramid, and the Trinomial Triangle" authors: - family-names: "Saucedo" given-names: "Antonio Jr." date-published: "2019-06" institution: name: "California State University, San Bernardino" collection-title: "Electronic Theses, Projects, and Dissertations" url: "https://scholarworks.lib.csusb.edu/etd/855" notes: "Binds to Research Stack `Semantics.SidonSets` → SilverSight `formal/CoreFormalism/SidonSets.lean`; supports Sidon-set constructions, Singer-theorem residues, and number-theory fixtures. The chaos-game appendix was dropped during porting." - type: article title: "Close packing density of polydisperse hard spheres" authors: - family-names: "Farr" given-names: "R." - family-names: "Groot" given-names: "R. D." date-published: "2009-12" doi: "10.1063/1.3276799" journal: "The Journal of Chemical Physics" notes: "Binds to Research Stack `Semantics.BraidEigensolid` / `Semantics.BraidSpherionBridge` / `Semantics.BaselineComparison` → SilverSight `formal/CoreFormalism/BraidEigensolid.lean` / `formal/CoreFormalism/BraidSpherionBridge.lean`; anchor paper for polydisperse close-packing theory used in eigensolid co" - type: article title: "Fractionation effects in phase equilibria of polydisperse hard-sphere colloids" authors: - family-names: "Fasolo" given-names: "M." - family-names: "Sollich" given-names: "P." date-published: "2004-10" doi: "10.1103/physreve.70.041410" journal: "Physical Review E" notes: "Binds to Research Stack `Semantics.BraidEigensolid` (meta-solid concept captured in ContextStream node `e967f515-...`) → SilverSight `formal/CoreFormalism/BraidEigensolid.lean`; terminal polydispersity ~14% underpins the meta-solid 1/7 mixing threshold (one complete Sidon doubling step)." - type: article title: "Random-close packing limits for monodisperse and polydisperse hard spheres" authors: - family-names: "Baranau" given-names: "V." - family-names: "Tallarek" given-names: "U." date-published: "2014" doi: "10.1039/c3sm52959b" journal: "Soft Matter" notes: "Binds to Research Stack `Semantics.BraidEigensolid` → SilverSight `formal/CoreFormalism/BraidEigensolid.lean`; definitive random-close-packing limits for monodisperse (~0.64) and polydisperse spheres used in eigensolid packing-bound claims." - type: article title: "Freezing of polydisperse hard spheres" authors: - family-names: "Kofke" given-names: "D." - family-names: "Bolhuis" given-names: "P." date-published: "1999" doi: "10.1103/physreve.59.618" journal: "Physical Review E" notes: "Binds to Research Stack `Semantics.BraidEigensolid` / `Semantics.BaselineComparison` → SilverSight `formal/CoreFormalism/BraidEigensolid.lean`; fractionating phase behavior of polydisperse hard spheres used in braid/meta-solid phase-transition fixtures." - type: article title: "A Differentiable Interior-Point Method in Single Precision" authors: - family-names: "Arrizabalaga" given-names: "Jon" - family-names: "Tracy" given-names: "Kevin" - family-names: "Manchester" given-names: "Zachary" date-published: "2026-05" url: "https://arxiv.org/abs/2605.17913" notes: "Binds to Research Stack `Semantics.FixedPoint` (inverse-proof machinery in `Semantics.Q16InverseProof`) → SilverSight `formal/CoreFormalism/FixedPoint.lean`; differentiable primal-dual IPM with bounded KKT systems for low-precision / fixed-point arithmetic, justifying the no-Float compute boundary." - type: article title: "Everything Is Logarithms" authors: - family-names: "Kritchevsky" given-names: "Alex" date-published: "2026-05-25" url: "https://alexkritchevsky.com/2026/05/25/everything-is-logarithms.html" notes: "Binds to SilverSight `formal/CoreFormalism/HachimojiLUT.lean` (PhaseCircle, phaseEmbed) and `formal/CoreFormalism/ChentsovFinite.lean` (Fisher metric uniqueness). Core claim: logarithms are coordinate-free objects; units emerge from ratios (log N / log 2), and dim(U⊗V) = dim(U)×dim(V) mirrors the a" - type: article title: "Stabilizing Recurrent Dynamics for Test-Time Scalable Latent Reasoning in Looped Language Models" authors: - family-names: "Yang" given-names: "Xiao-Wen" - family-names: "Han" given-names: "Ziyu" - family-names: "Zhang" given-names: "Xi-Hua" - family-names: "Wei" given-names: "Wen-Da" - family-names: "Shao" given-names: "Jie-Jing" - family-names: "Guo" given-names: "Lan-Zhe" - family-names: "Li" given-names: "Yu-Feng" date-published: "2026-05" url: "https://arxiv.org/abs/2605.26733" notes: "Binds to Research Stack `Semantics.AVMIsa.*` / `Semantics.Run` → SilverSight `Core/SilverSightCore.lean` AVM transition function; STARS regularizes spectral radius of the Jacobian using power iterations with JVPs, relevant to recurrent / looped AVM search dynamics." # ── Implemented references ported from Research Stack ────────────── - type: article title: "Brownian dynamics of polydisperse colloidal hard spheres: Equilibrium structures and random close packings" authors: - family-names: "Schaertl" given-names: "W." - family-names: "Sillescu" given-names: "H." date-published: "1994" doi: "10.1007/bf02183148" journal: "Journal of Statistical Physics" notes: "Early polydisperse hard-sphere BD simulation." - type: article title: "On the jamming phase diagram for frictionless hard-sphere packings" authors: - family-names: "Baranau" given-names: "V." - family-names: "Tallarek" given-names: "U." date-published: "2014" doi: "10.1039/c4sm01439a" journal: "Soft Matter" notes: "Jamming phase diagram for frictionless spheres." - type: article title: "Dense packing of binary and polydisperse hard spheres" authors: - family-names: "Santiso" given-names: "E." - family-names: "Müller" given-names: "E. A." date-published: "2002" doi: "10.1080/00268970210125313" journal: "Molecular Physics" notes: "Packing of binary/tridisperse/distributed sphere mixtures." - type: article title: "Freezing line of polydisperse hard spheres via direct-coexistence simulations" authors: - family-names: "Castagnède" given-names: "A." - family-names: "Filion" given-names: "L." - family-names: "Smallenburg" given-names: "F." date-published: "2025" doi: "10.1063/5.0281621" journal: "The Journal of Chemical Physics" notes: "Recent direct-coexistence simulation of polydisperse freezing line." - type: article title: "Frenkel's entropy-exchange mechanism in monodisperse, nearly hard-sphere colloids: minimal perturbations to access fluid-crystal coexistence" authors: - family-names: "Wang" given-names: "J. G." - family-names: "Dhumal" given-names: "U." - family-names: "Zakhari" given-names: "M. E. A." - family-names: "Zia" given-names: "R." date-published: "2025" doi: "10.1017/jfm.2026.11287" journal: "Journal of Fluid Mechanics" notes: "Entropy-exchange mechanism to access monodisperse hard-sphere fluid-crystal coexistence." - type: article title: "The elusive fluid-and-crystal coexistence state in simulations of monodisperse, hard-sphere colloids" authors: - family-names: "Wang" given-names: "J. G." - family-names: "Dhumal" given-names: "U." - family-names: "Zakhari" given-names: "M. E. A." - family-names: "Zia" given-names: "R." date-published: "2024" doi: "10.1002/aic.70275" journal: "AIChE Journal" notes: "Elusive nature of unbiased monodisperse hard-sphere coexistence simulation." - type: article title: "Local composition fluctuations act as precursors for crystal nucleation in polydisperse hard spheres" authors: - family-names: "De Jager" given-names: "M." - family-names: "Castagnède" given-names: "A." - family-names: "Smallenburg" given-names: "F." - family-names: "Filion" given-names: "L." date-published: "2025" journal: "arXiv" notes: "Composition fluctuation precursors in polydisperse nucleation." - type: article title: "Rheology and structure of polydisperse three-dimensional packings of spheres" authors: - family-names: "Cantor" given-names: "D." - family-names: "Azéma" given-names: "É." - family-names: "Sornay" given-names: "P." - family-names: "Radjai" given-names: "F." date-published: "2018" doi: "10.1103/physreve.98.052910" journal: "Physical Review E" notes: "Shear strength nearly unchanged despite microstructural differences in polydisperse packings." - type: article title: "Impact of polydispersity and confinement on diffusion in hydrodynamically interacting colloidal suspensions" authors: - family-names: "Gonzalez" given-names: "E." - family-names: "Aponte-Rivera" given-names: "C." - family-names: "Zia" given-names: "R." date-published: "2021" doi: "10.1017/jfm.2021.563" journal: "Journal of Fluid Mechanics" notes: "Polydispersity + confinement effect on colloidal diffusion." - type: article title: "Percus-Yevick structure factors made simple" authors: - family-names: "Botet" given-names: "R." - family-names: "Kwok" given-names: "S." - family-names: "Cabane" given-names: "B." date-published: "2020" doi: "10.1107/s1600576720014041" journal: "Journal of Applied Crystallography" notes: "Simplified PY structure factors for monodisperse/polydisperse fluids." - type: thesis title: "Microstructure and macroscopic properties of polydisperse systems of hard spheres" authors: - family-names: "Ogarko" given-names: "V." date-published: "2014" doi: "10.3990/1.9789036536691" institution: name: "University of Twente" notes: "Polydisperse hard-sphere EOS, moments, glassy regime." - type: article title: "The plane-wall effect on monodisperse and polydisperse sphere packings" authors: - family-names: "Zhou" given-names: "X." - family-names: "Huang" given-names: "Z." - family-names: "Li" given-names: "S." date-published: "2025" doi: "10.1016/j.powtec.2025.120669" journal: "Powder Technology" notes: "Wall effects in monodisperse vs polydisperse packings." - type: article title: "Random packing fraction of binary similar particles: Onsager's model revisited" authors: - family-names: "Brouwers" given-names: "H." date-published: "2022" doi: "10.3367/ufne.2023.11.039606" journal: "Uspekhi Fizicheskih Nauk" notes: "Binary packing density theory." - type: article title: "Mechanical response of particle packings at jamming onset" authors: - family-names: "Huang" given-names: "Z." - family-names: "Zhou" given-names: "X." - family-names: "Li" given-names: "S." date-published: "2025" doi: "10.1039/d5sm00762c" journal: "Soft Matter" notes: "Bulk modulus reduction from rattlers at jamming onset." - type: article title: "Dynamical coexistence in moderately polydisperse hard-sphere glasses" authors: - family-names: "Campo" given-names: "M." - family-names: "Speck" given-names: "T." date-published: "2019" doi: "10.1063/1.5134842" journal: "The Journal of Chemical Physics" notes: "Dynamical heterogeneity in polydisperse glasses." - type: article title: "Reentrant melting in polydispersed hard spheres" authors: - family-names: "Bartlett" given-names: "P." - family-names: "Warren" given-names: "P. 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A." date-published: "1989" doi: "10.1103/physrevlett.62.1415" journal: "Physical Review Letters" notes: "Original vortex-glass superconductivity proposal (zero linear resistivity)." - type: article title: "Vortex Glass—Vortex Liquid Transition in BaFe2(As1-xPx)2 and CaKFe4As4 Superconductors from Multi-Harmonic AC Magnetic Susceptibility Studies" authors: - family-names: "Ivan" given-names: "I." - family-names: "Ionescu" given-names: "A." - family-names: "Crisan" given-names: "D." - family-names: "Crisan" given-names: "A." date-published: "2023" doi: "10.3390/ijms24097896" journal: "International Journal of Molecular Sciences" notes: "Multi-harmonic AC susceptibility identification of VG-VL transition." - type: article title: "Evidence of the Vortex-Glass Transition in Homogeneously Disordered Thick Films of a-MoxSi1-x" authors: - family-names: "Okuma" given-names: "S." - family-names: "Arai" given-names: "M." date-published: "2000" doi: "10.1143/jpsj.69.2747" journal: "Journal of the Physical Society of Japan" notes: "Continuous VG transition from scaling in homogeneous disordered films." - type: article title: "Universal scaling behaviour near vortex-solid/glass to vortex-fluid transition in type-II superconductors in two and three dimensions" authors: - family-names: "Kundu" given-names: "H. K." - family-names: "Jesudasan" given-names: "J." - family-names: "Raychaudhuri" given-names: "P." - family-names: "Mukerjee" given-names: "S." - family-names: "Bid" given-names: "A." date-published: "2019" doi: "10.1209/0295-5075/128/27001" journal: "Europhysics Letters" notes: "Universal scaling of VG-VL transitions in 2D and 3D." - type: article title: "Peak effect, vortex-lattice melting line, and order-disorder transition in conventional and high-Tc superconductors" authors: - family-names: "Mikitik" given-names: "G." - family-names: "Brandt" given-names: "E." date-published: "2001" doi: "10.1103/physrevb.64.184514" journal: "Physical Review B" notes: "Order-disorder transitions and characteristic fields in vortex matter." - type: article title: "Observation of predicted superconductivity in Gd1.4Ce0.6Sr2Cu2TiOx with x ≈ 10" authors: - family-names: "Blackstead" given-names: "H. A." - family-names: "Dow" given-names: "J." - family-names: "Goldschmidt" given-names: "D." - family-names: "Pulling" given-names: "D. B." date-published: "1998" doi: "10.1016/s0375-9601(98)00348-x" journal: "Physics Letters A" notes: "Granular superconductivity with mesoscopic Meissner and vortex dissipation." - type: article title: "Observation of the Granular Josephson Mechanism and the Vortex-Glass Transition in the Polycrystalline GdBa2Cu3O7-δ Superconductor" authors: - family-names: "Vargas-Pineda" given-names: "E. M." - family-names: "Rivera-Contreras" given-names: "L. J." - family-names: "Pineda-Peña" given-names: "G." - family-names: "Téllez" given-names: "D." - family-names: "Roa-Rojas" given-names: "J." date-published: "2024" doi: "10.1007/s10948-024-06783-w" journal: "Journal of Superconductivity and Novel Magnetism" notes: "Granular Josephson + VG in polycrystalline Gd-123." - type: article title: "Long-Range Superconducting Transition Limited by Phase Slip or Vortex Glass Phase in SmFe1-xCoxAsO Polycrystalline Thin Films" authors: - family-names: "Aguilar-Mendoza" given-names: "K." - family-names: "Guillen-Cervantes" given-names: "A." - family-names: "Corrales-Mendoza" given-names: "I." - family-names: "Conde-Gallardo" given-names: "A." date-published: "2025" doi: "10.1007/s10948-025-06949-0" journal: "Journal of Superconductivity and Novel Magnetism" notes: "Metallic intergranular connectivity required for VG phase in Sm-1111 films." - type: article title: "Vortex-glass transition and vortex pinning behavior in three-dimensional NbTiN epitaxial films" authors: - family-names: "Han" given-names: "Z." - family-names: "Jing" given-names: "T." - family-names: "Yang" given-names: "J." - family-names: "Cai" given-names: "W." - family-names: "Li" given-names: "Z." date-published: "2024" doi: "10.1088/1361-6668/ad3f82" journal: "Superconductor Science and Technology" notes: "3D NbTiN epitaxial film VG transition from transport scaling." - type: article title: "Vortex-glass transitions in low-Tc superconducting Nb thin films and Nb/Cu superlattices" authors: - family-names: "Villegas" given-names: "J." - family-names: "Vicent" given-names: "J." date-published: "2005" doi: "10.1103/physrevb.71.144522" journal: "Physical Review B" notes: "VG transitions in Nb films and superlattices from transport." - type: article title: "Unveiling the vortex glass phase in the surface and volume of a type-II superconductor" authors: - family-names: "Sánchez" given-names: "J. A." - family-names: "Maldonado" given-names: "R. C." - family-names: "Bolecek" given-names: "N. R. C." date-published: "2019" doi: "10.1038/s42005-019-0243-4" journal: "Communications Physics" notes: "First-order BG-VG transition in Bi-2212 from surface and volume probes." - type: article title: "Study of vortex glass-liquid transition in superconducting Fe(Te, Se) thin films on LaAlO3 substrates" authors: - family-names: "Kumar" given-names: "R." - family-names: "Mitra" given-names: "A." - family-names: "Varma" given-names: "G. D." date-published: "2019" doi: "10.1063/1.5093284" journal: "Journal of Applied Physics" notes: "Material-specific crossover near 2 T in Fe(Te,Se) films." - type: article title: "Vortex-glass phases in type-II superconductors" authors: - family-names: "Nattermann" given-names: "T." - family-names: "Scheidl" given-names: "S." date-published: "2000" doi: "10.1080/000187300412257" journal: "Advances in Physics" notes: "Comprehensive review of vortex-glass phases." - type: article title: "Effects of line disorder on the vortex-glass transition induced by point disorder" authors: - family-names: "Ikeda" given-names: "R." date-published: "2001" doi: "10.1143/jpsj.70.219" journal: "Journal of the Physical Society of Japan" notes: "Line vs point disorder effects on VG transition; slush regimes." - type: article title: "Theory of Magnetic Domain Phases in Ferromagnetic Superconductors" authors: - family-names: "Devizorova" given-names: "Z. A." - family-names: "Mironov" given-names: "S." - family-names: "Buzdin" given-names: "A." date-published: "2019" doi: "10.1103/physrevlett.122.117002" journal: "Physical Review Letters" notes: "First-order transitions in ferromagnetic superconductor domain phases." # ── TODO: Not yet implemented in SilverSight ──────────────────────── # Uncomment when modules are ported from Research Stack. # - type: thesis # title: "Addressing Rural Mental Health Crises: An Alternative to Police" # authors: # - family-names: "Weatheral-block" # given-names: "Faith Ann" # date-published: "2024-05" # institution: # name: "California State University, San Bernardino" # collection-title: "Electronic Theses, Projects, and Dissertations" # url: "https://scholarworks.lib.csusb.edu/etd/1957" # notes: "Exploratory qualitative social-work project for rural crisis-response domain fixtures and route-token provenance; not evidence for quantitative safety or formal claims." # - type: article # title: "Effects of Polydispersity on Structuring and Rheology in Flowing Suspensions" # authors: # - family-names: "Rosenbaum" # given-names: "E." # - family-names: "Massoudi" # given-names: "M." # - family-names: "Dayal" # given-names: "K." # date-published: "2019" # doi: "10.1115/1.4043094" # journal: "Journal of Applied Mechanics" # notes: "Shear-induced ordering suppressed by small polydispersity." # - type: article # title: "Lattice-Boltzmann simulations of low-Reynolds-number flow past mono- and bidisperse arrays of spheres: results for the permeability and drag force" # authors: # - family-names: "van der Hoef" # given-names: "M. A." # - family-names: "Beetstra" # given-names: "R." # - family-names: "Kuipers" # given-names: "J. A. 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