SilverSight/docs
openresearch 4910e3877c Add cmix weight matrix analysis: compression shape as epigenetic landscape
Documents the cmix (fx2-cmix) architecture from the epigenetic
perspective:

- 461 models = 461 genes
- 23 layer-0 mixers = 23 regulatory regions
- Layer-1 mixer = master regulator
- Weight matrix (23 × 461) = the compression genome
- SVD of weight matrix = the compression shape equation
- Singular values = active genes (high) vs silenced (low)
- Learning rates = methylation rates
- Context hash map = chromatin accessibility

The key prediction: the compression shape is low-rank.
If 5 singular values capture 95% of energy, then:
- 5 mixers suffice (18 are redundant)
- The search space for better compressors is 5D, not 23 × 461
- Alternative expression patterns (nearby weight matrices) may compress better

Next steps: extract trained weights from cmix, compute SVD, encode
as hachimoji LUT, map in math space, search neighborhood.
2026-07-03 16:10:01 +00:00
..
adversarial_review refactor(rrc): rename corpus250→allFixtures/emitManifold, generic n-dimensional modules, Authentik deploy 2026-06-30 04:54:40 -05:00
build_logs chore(quality): native_decide migration, docs, and phi pipeline cleanup 2026-06-27 01:56:54 -05:00
concept_map feat(data): sync expanded concept map from Research Stack 2026-06-21 17:23:11 -05:00
first_principles math(worksheet): G3_WORKSHEET.md — pure arithmetic, no English in formulas 2026-06-23 05:29:41 -05:00
fundamental_math chore(quality): native_decide migration, docs, and phi pipeline cleanup 2026-06-27 01:56:54 -05:00
refactor chore: commit all pending work from prior sessions 2026-06-30 04:54:40 -05:00
research chore: commit all pending work from prior sessions 2026-06-30 04:54:40 -05:00
reviews feat(semisym): §0 discriminator — Δ₃ verdict PROPER (∇R≠0, R·R≠L·Q); roadmap §0 active 2026-07-03 04:53:45 -05:00
ARCHITECTURE.md chore: commit all pending work from prior sessions 2026-06-30 04:54:40 -05:00
CLAIMS_STATUS.md fix(review): angry reviewer corrections — retract consistently across all files 2026-06-30 20:19:12 -05:00
cmix_epigenetic_analysis.md Add cmix weight matrix analysis: compression shape as epigenetic landscape 2026-07-03 16:10:01 +00:00
FIX_DESIGN.md feat: exact charpoly codebook + fix design doc 2026-07-01 21:15:46 +00:00
generate_porting_candidates.py docs: bind ported concepts to CFF references 2026-06-21 06:49:14 -05:00
generate_project_map.py feat(rrc): bare-minimum RRC refactor into SilverSight 2026-06-21 09:08:48 -05:00
generate_research_stack_usage_map.py refactor(rrc): rename corpus250→allFixtures/emitManifold, generic n-dimensional modules, Authentik deploy 2026-06-30 04:54:40 -05:00
GLOSSARY.md Add new terms: Integer Spiral Packing, phi_corkscrew_index, f(n) layout, radius_sq, angle_frac, Cartan Δ-floor, Fisher version, Δ_7, fingerprint, codeword, TorusWinding, a_exact, b_exact, torus_to_spiral_index 2026-07-02 04:05:19 +02:00
GLOSSARY_ALLOWLIST.md docs(architecture): rewrite project plan and map old Research Stack layers 2026-06-21 09:17:25 -05:00
GOORMAGHTIGH_SPECTRAL.md docs: Goormaghtigh-Spectral codebook connection 2026-07-01 21:40:42 +00:00
PROJECT_MAP.json spec(miner): Rydberg-braid signature extraction implementation 2026-06-22 20:25:17 -05:00
PROJECT_MAP.md refactor(rrc): rename corpus250→allFixtures/emitManifold, generic n-dimensional modules, Authentik deploy 2026-06-30 04:54:40 -05:00
research_stack_usage_graph_thumb.png feat(rrc): bare-minimum RRC refactor into SilverSight 2026-06-21 09:08:48 -05:00
SPECTRAL_CODEBOOK_ANALYSIS.md docs: correct spectral codebook analysis per independent review 2026-07-01 21:03:50 +00:00
SPECTRAL_CODEBOOK_GENERATOR.md feat(spectral): Cosmos Gremlin loader for the codebook graph (dry-run by default) 2026-07-01 21:32:48 -05:00
THEOREM_STACK.md docs: complete mathematical dependency tree (THEOREM_STACK.md) 2026-07-01 23:02:40 +00:00