mirror of
https://github.com/allaunthefox/SilverSight.git
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allaun
6b649ad271
Critical bug fix: dna_codec.py used biological base ordering (ATGCBSPZ) instead of ASCII-ordered spec ordering (ABCGPSTZ). This violated the core monotonicity axiom (int rank = lexicographic rank) that the entire monotone LUT pipeline depends on. Changes: - python/dna_codec.py: BITS_TO_BASE, HACHIMOJI_BASES, LATIN_TO_GREEK corrected to ABCGPSTZ ordering; encode_binary_vector parameter renamed bases_per_var; module docstring updated - tests/test_dna_codec.py: hardcoded byte→DNA expectations updated for new ordering (0xFF→ZZT, 0xd1→TPC); bases_per_var parameter name updated; 31/31 tests green - formal/CoreFormalism/HachimojiLUT.lean: replace fragile canonical_phases_preserved.2.2.2.2.2.1 chains with named obtain destructuring in pythagorean_position and contradiction_position - docs/UNIFIED_THEORY.md: add ground-truth caveat to epigenetic optimizer results table (n≥24 results are local optima, not verified global minima) Note: test_dna_nn.py has 4 pre-existing failures (Ising chain correlations) unrelated to this fix — dna_qubo_nn.py has its own base encoding and does not import dna_codec.py. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> |
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| .. | ||
| build_logs | ||
| concept_map | ||
| reviews | ||
| ARCHITECTURE.md | ||
| EPIGENETIC_COMPUTATION.md | ||
| FINITE_INFINITY_DUALITY.md | ||
| generate_porting_candidates.py | ||
| generate_project_map.py | ||
| generate_research_stack_usage_map.py | ||
| GLOSSARY.md | ||
| GLOSSARY_ALLOWLIST.md | ||
| GODEL_BOUNDARY_AND_CLASSIFIERS.md | ||
| HACHIMOJI_DNA_ENCODING.md | ||
| HACHIMOJI_DNA_SYNTAX.md | ||
| hachimoji_torsor_consequences.md | ||
| LIBRARY_MANIFEST.md | ||
| PROJECT_MAP.json | ||
| PROJECT_MAP.md | ||
| REDERIVATION.md | ||
| research_stack_porting_candidates.md | ||
| research_stack_usage_graph.dot | ||
| research_stack_usage_graph.json | ||
| research_stack_usage_graph.md | ||
| research_stack_usage_graph.svg | ||
| research_stack_usage_graph_thumb.png | ||
| RRC_PLACEMENT.md | ||
| RRC_REFACTOR_READINESS.md | ||
| SYMBOLIC_REGRESSION_DESIGN.md | ||
| TESTING.md | ||
| UNCOMPUTABILITY.md | ||
| UNIFIED_THEORY.md | ||
