SilverSight/docs
openresearch d9b29b0bad docs: reaction primes — algebraic irreducibility for DNA computation
Unifying framework that connects ALL session findings under one
algebraic roof:

Number theory: prime → irreducible reaction → eigenvalue
Composite → composed reaction network → full matrix
Factorization → decomposition into primitives → eigendecomposition
Unique factorization → canonical decomposition → spectral theorem
p-adic valuation → reaction-prime exponent → eigenvalue multiplicity

Three formulations:
1. Reaction algebra (generators of free monoid, hachimoji bases)
2. Information primes (minimal representatives of equivalence classes)
3. Category theory (indecomposable morphisms)

Conservation law = information-theoretic FTA:
  Σ prime_i × exponent_i ≥ K(data)

The SAME law, whether stated as compression, number theory,
Lagrangian, or measurement. Prime factorization is the universal
algebraic structure.

Pipeline = prime factorization engine:
- Encoder = word in prime algebra
- QR/O-AMMR = spectral prime decomposition
- GCCL = canonical form verification
- CRT = coprime prime reconstruction
- Char-poly = prime spectrum receipt

Well-posed questions:
1. Does every DNA computation factor into reaction-primes?
2. Is the factorization unique?
3. What is the prime spectrum of a DNA program?
4. Can programs be distinguished by prime spectra?
5. Minimum primes for NP properties?
6. Super-polynomial prime decompositions → P ≠ NP?

Avoids linguistic semantic primes controversy. Grounded in algebra,
information, and category theory. Connects to everything.
2026-07-03 22:00:21 +00:00
..
adversarial_review refactor(rrc): rename corpus250→allFixtures/emitManifold, generic n-dimensional modules, Authentik deploy 2026-06-30 04:54:40 -05:00
build_logs chore(quality): native_decide migration, docs, and phi pipeline cleanup 2026-06-27 01:56:54 -05:00
concept_map feat(data): sync expanded concept map from Research Stack 2026-06-21 17:23:11 -05:00
diagrams feat(braid/dag): land untracked research WIP + register 4 formal libs; ignore build artifacts 2026-07-03 15:11:37 -05:00
first_principles math(worksheet): G3_WORKSHEET.md — pure arithmetic, no English in formulas 2026-06-23 05:29:41 -05:00
fundamental_math chore(quality): native_decide migration, docs, and phi pipeline cleanup 2026-06-27 01:56:54 -05:00
refactor chore: commit all pending work from prior sessions 2026-06-30 04:54:40 -05:00
research docs: reaction primes — algebraic irreducibility for DNA computation 2026-07-03 22:00:21 +00:00
reviews feat(semisym): §0 discriminator — Δ₃ verdict PROPER (∇R≠0, R·R≠L·Q); roadmap §0 active 2026-07-03 04:53:45 -05:00
ARCHITECTURE.md chore: commit all pending work from prior sessions 2026-06-30 04:54:40 -05:00
CLAIMS_STATUS.md fix(review): angry reviewer corrections — retract consistently across all files 2026-06-30 20:19:12 -05:00
cmix_epigenetic_analysis.md Add cmix weight matrix analysis: compression shape as epigenetic landscape 2026-07-03 16:10:01 +00:00
FIX_DESIGN.md feat: exact charpoly codebook + fix design doc 2026-07-01 21:15:46 +00:00
generate_porting_candidates.py docs: bind ported concepts to CFF references 2026-06-21 06:49:14 -05:00
generate_project_map.py feat(rrc): bare-minimum RRC refactor into SilverSight 2026-06-21 09:08:48 -05:00
generate_research_stack_usage_map.py refactor(rrc): rename corpus250→allFixtures/emitManifold, generic n-dimensional modules, Authentik deploy 2026-06-30 04:54:40 -05:00
GLOSSARY.md Add new terms: Integer Spiral Packing, phi_corkscrew_index, f(n) layout, radius_sq, angle_frac, Cartan Δ-floor, Fisher version, Δ_7, fingerprint, codeword, TorusWinding, a_exact, b_exact, torus_to_spiral_index 2026-07-02 04:05:19 +02:00
GLOSSARY_ALLOWLIST.md docs(architecture): rewrite project plan and map old Research Stack layers 2026-06-21 09:17:25 -05:00
GOORMAGHTIGH_SPECTRAL.md docs: Goormaghtigh-Spectral codebook connection 2026-07-01 21:40:42 +00:00
gw_compression_honest_result.md docs: record honest GW compression result (583x = zero-noise artifact) 2026-07-03 20:34:18 +00:00
PROJECT_MAP.json spec(miner): Rydberg-braid signature extraction implementation 2026-06-22 20:25:17 -05:00
PROJECT_MAP.md refactor(rrc): rename corpus250→allFixtures/emitManifold, generic n-dimensional modules, Authentik deploy 2026-06-30 04:54:40 -05:00
research_stack_usage_graph_thumb.png feat(rrc): bare-minimum RRC refactor into SilverSight 2026-06-21 09:08:48 -05:00
review_findings.md feat(braid/dag): land untracked research WIP + register 4 formal libs; ignore build artifacts 2026-07-03 15:11:37 -05:00
SPECTRAL_CODEBOOK_ANALYSIS.md docs: correct spectral codebook analysis per independent review 2026-07-01 21:03:50 +00:00
SPECTRAL_CODEBOOK_GENERATOR.md feat(spectral): Cosmos Gremlin loader for the codebook graph (dry-run by default) 2026-07-01 21:32:48 -05:00
THEOREM_STACK.md docs: complete mathematical dependency tree (THEOREM_STACK.md) 2026-07-01 23:02:40 +00:00
weird_machine_conservation_law.md docs: capstone — the octagon principle 2026-07-03 21:35:15 +00:00