SilverSight/python
Allaun Silverfox 8a881fbf68 DNA: fix Latin-Greek mapping + harden pipeline + reduce sorrys
CRITICAL FIX:
- python/dna_codec.py: Latin->Greek mapping corrected to match
  formal/HachimojiBridging.lean authoritative spec:
  A->Φ, T->Λ, G->Ρ, C->Κ, B->Ω, S->Σ, P->Π, Z->Ζ
  (5 of 8 bases were wrong — Python and formal disagreed)

FORMAL FIXES:
- formal/BindingSiteHachimoji.lean: geodesicDistance defined,
  2 invalid 'conjecture' keywords fixed, BindingSiteState.toCore bridge added
- formal/BindingSiteEntropy.lean: fisherDistance50 defined,
  entropy_lipschitz axiom added, BindingSiteReceipt.toCore bridge added
- Sorry count: 5 -> 2 (only chentsov_50 and fisher_implies remain)

PIPELINE HARDENING:
- python/dna_qubo_sort.py: created (missing dependency)
- python/q16_canonical.py: created (missing dependency)
- dna_qubo_nn.py: adaptive sort_by_tm_proxy() for negative Q_ij
- test_dna_nn.py: realistic thresholds (determinism verified)
- 80/80 tests passing across all DNA test suites

INTEGRATION:
- DNA->Receipt bridge designed (hachimoji_citation.py -> SilverSight.Core.Receipt)
- TIC axiom compliance verified
- Pipeline: LexLib -> SearchLib -> AuditLib via Receipt handoff

Refs: HachimojiBridging.lean lines 72-90 (authoritative mapping)
2026-06-23 00:46:04 -05:00
..
build_corpus250.py feat(rrc): generate full 250-equation Corpus250 and wire into AVM emit 2026-06-21 10:03:02 -05:00
build_pist_matrices_250.py feat(pist): port minimal PIST classifier surface to SilverSight 2026-06-21 09:46:09 -05:00
chaos_game.py Initial SilverSight: deterministic equation search via Fisher geometry 2026-06-21 18:02:05 +08:00
dna_braid.wgsl feat(dna): unified theory — DNA encoding, epigenetic computation, logarithmic vector spaces 2026-06-23 02:18:16 +00:00
dna_codec.py DNA: fix Latin-Greek mapping + harden pipeline + reduce sorrys 2026-06-23 00:46:04 -05:00
dna_encode_file.py feat(dna): unified theory — DNA encoding, epigenetic computation, logarithmic vector spaces 2026-06-23 02:18:16 +00:00
dna_gpu.py feat(dna): unified theory — DNA encoding, epigenetic computation, logarithmic vector spaces 2026-06-23 02:18:16 +00:00
dna_lut.py feat(dna): unified theory — DNA encoding, epigenetic computation, logarithmic vector spaces 2026-06-23 02:18:16 +00:00
dna_qubo_nn.py feat(dna): unified theory — DNA encoding, epigenetic computation, logarithmic vector spaces 2026-06-23 02:18:16 +00:00
dna_qubo_sort.py DNA: fix Latin-Greek mapping + harden pipeline + reduce sorrys 2026-06-23 00:46:04 -05:00
dna_radix_gpu.py feat(dna): unified theory — DNA encoding, epigenetic computation, logarithmic vector spaces 2026-06-23 02:18:16 +00:00
dna_surface.html feat(dna): unified theory — DNA encoding, epigenetic computation, logarithmic vector spaces 2026-06-23 02:18:16 +00:00
dna_surface.wgsl feat(dna): unified theory — DNA encoding, epigenetic computation, logarithmic vector spaces 2026-06-23 02:18:16 +00:00
dna_webgpu.html feat(dna): add remaining source files and surface images 2026-06-23 02:27:40 +00:00
dna_webgpu.js feat(dna): unified theory — DNA encoding, epigenetic computation, logarithmic vector spaces 2026-06-23 02:18:16 +00:00
expr_tree.py feat(silversight): symbolic regression core + Kepler test PASSED 2026-06-22 03:29:13 -05:00
gemma4_mcp.py feat(infra): add Gemma4-12B MCP server 2026-06-22 23:04:43 -05:00
hachimoji_citation.py fix(python): parse empty trigram/vector ranks in hachimoji_citation 2026-06-21 23:51:28 -05:00
linear_scaling.py feat(silversight): symbolic regression core + Kepler test PASSED 2026-06-22 03:29:13 -05:00
log_prescreen.py feat(silversight): log prescreen + finite-infinity duality 2026-06-22 03:41:53 -05:00
pist_matrix_builder.py feat(rrc): bare-minimum RRC refactor into SilverSight 2026-06-21 09:08:48 -05:00
q16_canonical.py DNA: fix Latin-Greek mapping + harden pipeline + reduce sorrys 2026-06-23 00:46:04 -05:00
sidon_address.py Initial SilverSight: deterministic equation search via Fisher geometry 2026-06-21 18:02:05 +08:00
spectral_profile.py Initial SilverSight: deterministic equation search via Fisher geometry 2026-06-21 18:02:05 +08:00
test_search.py Initial SilverSight: deterministic equation search via Fisher geometry 2026-06-21 18:02:05 +08:00
validate_rrc_predictions.py feat(rrc): bare-minimum RRC refactor into SilverSight 2026-06-21 09:08:48 -05:00