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docs: full documentation + roadmap refresh (2026-05-19)

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- CHANGELOG: add 2026-05-09 through 2026-05-19 entry covering Lean
  hardening, storage stack, 20+ new gates, physics RG suite
- ROADMAP: update layer model (746 modules, 3529 jobs, 0 errors);
  mark eigensolid_convergence proven; add section 12 (Infrastructure
  & Data Layer) covering ENE RDS, Garage S3, storage agent, devcontainer
- TODO_MAP: add B11 (eigensolid convergence, DONE), Phase I (infra),
  Phase J (adversarial gates); rename old Phase I to Phase K
- README: update Lean module/build counts; add Infrastructure table
- ARCHITECTURE: update L0 row; add repository structure rows for
  ene-rds, storage, devcontainer; add sections 11-13 (Storage &
  Persistence Layer, ENE RDS Workspace, Braid Eigensolid Compressor)
- CONCEPTS: add Braid Eigensolid Compressor, Constrained Agent
  Framework, and Garage S3 Storage Stack concept entries
- 4-Infrastructure/README: rewrite to reflect ENE RDS Rust workspace,
  restic/Garage/rclone storage stack, storage agent, GPU dispatch,
  adversarial harnesses

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4-Infrastructure/README.md
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# 4-Infrastructure # 4-Infrastructure
**Purpose:** Python shims, GPU duty assignment, cloud storage, web interaction, hardware designs, drivers. **Purpose:** Rust/Python shims, GPU duty assignment, cloud storage, web interaction, hardware designs, drivers, and the ENE RDS Rust workspace.
**Depends on:** `0` through `3` **Depends on:** `0` through `3`
## Contents (Target) ## Directory Layout
| Source | Destination | | Path | Purpose |
|--------|-------------| |------|---------|
| `infra/` | `4-Infrastructure/infra/` | | `infra/` | Python shims, ENE distributed node, credential server |
| `hardware/` | `4-Infrastructure/hardware/` | | `infra/ene-rds/` | **ENE RDS Rust workspace** (8 crates — Rust replacement for Python RDS stack) |
| `drivers/` | `4-Infrastructure/drivers/` | | `hardware/` | FPGA Verilog, FAMM verilator, KiCad templates |
| `config/` | `4-Infrastructure/config/` | | `drivers/` | Hardware drivers |
| `gpu/` | WGSL shaders, wgpu compute dispatch |
| `storage/` | **restic + Garage S3 + rclone storage stack** |
| `storage/storage_agent.py` | **Storage observer/optimizer agent** |
| `shim/` | Stack solidification probes, adversarial harnesses, gate library |
| `surface/` | FastAPI/WebSocket surface (spec'd, pending implementation) |
## Components ## ENE RDS Rust Workspace (`infra/ene-rds/`)
- **Lean Shim** — Lean ↔ Python bidirectional interface 8-crate Rust workspace replacing the Python RDS stack. Build: `cd 4-Infrastructure/infra/ene-rds && cargo build --release`.
- **ENE Shim** — ENE node management from Python
- **GPU Duty** — GPU translation surface duty assignment | Crate | Purpose |
- **Cloud Storage** — Rclone topological storage (Google Drive) |-------|---------|
- **Web Surface** — BrowserPool, distributed crawl | `ene-rds-core` | Shared PostgreSQL client, DSN builder, receipts |
| `ene-rds-wiki` | Wiki CRUD + full-text search + revision tracking |
| `ene-rds-ephemeral` | EphemeralNode thermal zones, tasks, receipts, scars, metrics |
| `ene-rds-chat` | Chat session ingestion, keyword/semantic search |
| `ene-api` | Axum HTTP server on :3000 |
| `ene-node` | Node identity and gossip primitives |
| `ene-storage` | S3/Garage object storage client |
| `ene-sync` | Polls opencode.db SQLite → upserts into RDS chat tables |
sqlx 0.8.6 (Dependabot vuln from 0.7 resolved 2026-05-19).
## Storage Stack (`storage/`)
Three tools, non-overlapping roles. Full contract: `4-Infrastructure/AGENTS.md §Storage Stack`.
| Tool | Job |
|------|-----|
| **restic** | Deduplicated, encrypted, content-addressed snapshots |
| **Garage v2.3.0** | Self-hosted S3-compatible object store (Tailscale mesh, 5 buckets) |
| **rclone** | Raw sync between remotes (Garage↔gdrive cold copy) |
**Storage agent** (`storage/storage_agent.py`): observe→decide→act loop, systemd timer (every 15 min), Q16_16 thresholds, JSONL hash-chain receipts.
## GPU Status ## GPU Status
- **Device:** NVIDIA GeForce RTX 4070 - **Device:** NVIDIA GeForce RTX 4070
- **Memory:** 12.3GB total, ~10GB available - **Memory:** 12.3GB total, ~10GB available
- **CUDA:** 13.0 - **CUDA:** 13.0
- **Compute dispatch:** WGSL → wgpu (Vulkan GPU / lavapipe CPU / WebGPU WASM). Dispatch entry points: `5-Applications/parquet_compressor/src/gpu.rs`, `gpu/wasmgpu/` (47 WGSL shaders)
## Components
- **ENE RDS** — Rust workspace replacing Python RDS (see above)
- **Storage Stack** — restic + Garage S3 + rclone (see above)
- **Lean Shim** — Lean ↔ Python bidirectional interface
- **ENE Shim** — ENE node management from Python
- **GPU Duty** — WGSL/wgpu compute dispatch (Q16_16 deterministic across all substrates)
- **Credential Gateway** — `infra/credential_server.py`, apiProvider service kind, cupfox routing
- **Adversarial Harnesses** — `shim/adversarial_duals/`: Anti-FAMM, Anti-BraidStorm, 20+ gate library entries

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@ -19,8 +19,8 @@ The Sovereign Research Stack is a formalized system where Lean 4 is the single s
| Level | Name | Domain | Status | Key Components | | Level | Name | Domain | Status | Key Components |
|-------|------|--------|--------|----------------| |-------|------|--------|--------|----------------|
| **L0** | Primordial | Pure math, fixed-point arithmetic, braid fields | **Implemented** (Lean) | Q16_16 FixedPoint, Q0_64 Scalar, PIST/DIAT Shell, BraidField, SSMS_nD | | **L0** | Primordial | Pure math, fixed-point arithmetic, braid fields | **Implemented** (746 modules, 3529 build jobs, 0 errors) | Q16_16 FixedPoint, Q0_64 Scalar, PIST/DIAT Shell, BraidField, SSMS_nD, EigensolidConvergence |
| **L1** | Geometric | Shape-aware topology, coupling geometry | **Partial** (docs migrated, partial Lean) | GWL 5-factor Coupling, TorsionalPIST (quaternion), HybridTSMPISTTorus, GWL Throat | | **L1** | Geometric | Shape-aware topology, coupling geometry | **Partial** (docs migrated, partial Lean; eigensolid convergence proven) | GWL 5-factor Coupling, TorsionalPIST (quaternion), HybridTSMPISTTorus, GWL Throat, BodegaFlow horn-fiber |
| **L2** | Biological | Genetic codes, spiking neurons, STDP | **Speculative** (docs exist, minor Lean) | 30+ Genetic Code Tables, Codon Optimization, SpikingDynamics (Izhikevich), GenomicCompression | | **L2** | Biological | Genetic codes, spiking neurons, STDP | **Speculative** (docs exist, minor Lean) | 30+ Genetic Code Tables, Codon Optimization, SpikingDynamics (Izhikevich), GenomicCompression |
| **L3** | Thermodynamic | Energy-aware quality, homeostatic governance | **Speculative** (docs migrated) | Trixal Quality (thermal/work/irreversibility), Homeostatic Governor, HyperFlow (Navier-Stokes) | | **L3** | Thermodynamic | Energy-aware quality, homeostatic governance | **Speculative** (docs migrated) | Trixal Quality (thermal/work/irreversibility), Homeostatic Governor, HyperFlow (Navier-Stokes) |
| **L4** | Security | Attack-aware gating, frustration memory | **Partial** (AngrySphinx in Lean) | AngrySphinx (exponential PoD), FAMM Frustration, ASICTopology | | **L4** | Security | Attack-aware gating, frustration memory | **Partial** (AngrySphinx in Lean) | AngrySphinx (exponential PoD), FAMM Frustration, ASICTopology |
@ -186,7 +186,10 @@ All 7 invariants are enforced by the USTSM kernel on every transition. No substr
| **Day 3** | Shock Width Optimal `w* = argmin L_total(w)` | Invariant 6 (Cognitive) | `selectStrategy` + `totalTypeLoad` | | **Day 3** | Shock Width Optimal `w* = argmin L_total(w)` | Invariant 6 (Cognitive) | `selectStrategy` + `totalTypeLoad` |
| **Day 4** | KdV Soliton Stability `mass(soliton) = constant` | Invariant 7 (Scalar) | `scalarImpliesMassEquality` | | **Day 4** | KdV Soliton Stability `mass(soliton) = constant` | Invariant 7 (Scalar) | `scalarImpliesMassEquality` |
**Status:** The Burgers stack has 7 Lean files with full numerical implementations (`#eval` passing) but zero theorems. The GENSIS 7-invariant system provides exact proof templates. The theorems are tractable — 4 days of formalization using `AutoAdaptiveMetatypeSystem.lean` templates. **Status:** The Burgers stack has 7 Lean files with full numerical implementations (`#eval` passing). The GENSIS 7-invariant system provides exact proof templates.
- **Closed:** `eigensolid_convergence` — braid crossing loop convergence proven (`EigensolidConvergence.lean`, commit `d84569a5`).
- **Open:** Energy dissipation, FNWH regularization, shock width, KdV soliton stability — 4 theorems remaining. Tractable in ~4 days using `AutoAdaptiveMetatypeSystem.lean` templates.
--- ---
@ -253,11 +256,11 @@ No promotion without domain-appropriate evidence. Compression claims require SI
| Layer | Status | Progress | | Layer | Status | Progress |
|-------|--------|----------| |-------|--------|----------|
| **L0 Primordial** | ✅ Lean implemented | PIST, Q16_16, BraidField, Genome18, NS-MΔ all have theorems/#eval | | **L0 Primordial** | ✅ Lean implemented | 746 modules, 3529 build jobs, 0 errors; eigensolid convergence proven; Q16_16 signed-arithmetic bugs fixed; 9 sorrys closed; 95 inspection issues resolved |
| **L1 Geometric** | 🔄 Burgers active | Numerical impls exist; 4-theorem attack in progress | | **L1 Geometric** | 🔄 Burgers active | Eigensolid convergence closed; BodegaFlow horn-fiber refinements committed; RG torsion physics suite (H0, DESI, BAO, Higgs, Jupiter moons); 4 Burgers theorems remain |
| **L2 Biological** | 📋 Speculative | GENSIS doc, genetic code tables mapped; no Lean | | **L2 Biological** | 📋 Speculative | GENSIS doc, genetic code tables mapped; no Lean |
| **L3 Thermodynamic** | 📋 Speculative | Trixal, Homeostatic docs; no Lean | | **L3 Thermodynamic** | 📋 Speculative | Trixal, Homeostatic docs; no Lean |
| **L4 Security** | 🔄 Partial | AngrySphinx Lean exists; FAMM, ASICTopology spec'd | | **L4 Security** | 🔄 Partial | AngrySphinx Lean exists; Anti-FAMM + Anti-BraidStorm adversarial harnesses added; 16D anchor packs operational; 20+ gate library entries added |
| **L5 Semantic** | 🔄 Partial | RRC equation projection receipt exists; 278 surfaces projected, 249 HOLD pending scale-band/negative-control witnesses | | **L5 Semantic** | 🔄 Partial | RRC equation projection receipt exists; 278 surfaces projected, 249 HOLD pending scale-band/negative-control witnesses |
| **L6 Meta** | 🔄 Partial | Cognitive load receipts exist; connectome-protective overflow needs Lean witness surface | | **L6 Meta** | 🔄 Partial | Cognitive load receipts exist; connectome-protective overflow needs Lean witness surface |
| **FPGA Hardware** | ✅ Synthesized | Tang Nano 9K: Yosys pass (614 cells), P&R pass (162 MHz), bitstream (2 MB) | | **FPGA Hardware** | ✅ Synthesized | Tang Nano 9K: Yosys pass (614 cells), P&R pass (162 MHz), bitstream (2 MB) |
@ -265,13 +268,14 @@ No promotion without domain-appropriate evidence. Compression claims require SI
| **Integration** | 📋 TODO | Lean→Verilog extraction, equivalence checking spec'd | | **Integration** | 📋 TODO | Lean→Verilog extraction, equivalence checking spec'd |
**Immediate next actions** (from `TODO_MAP.md` §Immediate Next Actions): **Immediate next actions** (from `TODO_MAP.md` §Immediate Next Actions):
1. Audit Lean for `sorry` — `grep -rn "sorry\|admit\|axiom" 0-Core-Formalism/lean/Semantics/` 1. Execute Burgers Day 1 theorem (Energy Dissipation `d(Σ½u²)/dt ≤ 0`)
2. Add RRC scale-band witness schema for equation records; rerun `4-Infrastructure/shim/rrc_equation_classifier.py` 2. Prove `receipt_invertible` for braid eigensolid compressor (second required theorem)
3. Add negative-control strength witnesses for HOLD rows before promotion 3. Add RRC scale-band witness schema for equation records; rerun `4-Infrastructure/shim/rrc_equation_classifier.py`
4. UART packet format design (start byte + 3-byte payload + checksum) 4. Add negative-control strength witnesses for HOLD rows before promotion
5. Create `4-Infrastructure/surface/` FastAPI skeleton 5. Bootstrap Garage replication (cupfox-4gb-2cpu + nixos nodes → replication_factor=3)
6. Flash Tang Nano 9K with generated bitstream; verify LED behavior 6. UART packet format design (start byte + 3-byte payload + checksum)
7. Execute Burgers Day 1 theorem (Energy Dissipation) 7. Create `4-Infrastructure/surface/` FastAPI skeleton
8. Flash Tang Nano 9K with generated bitstream; verify LED behavior
--- ---
@ -290,4 +294,49 @@ The USTSM unifies all 36 substrates across 7 abstraction levels. Every substrate
--- ---
---
## 12. Infrastructure & Data Layer (Current)
### ENE RDS Rust Workspace
`4-Infrastructure/infra/ene-rds/` — 8-crate Rust workspace replacing the Python RDS stack:
| Crate | Purpose |
|-------|---------|
| `ene-rds-core` | Shared PostgreSQL client, DSN builder, receipts |
| `ene-rds-wiki` | Wiki CRUD + full-text search + revision tracking |
| `ene-rds-ephemeral` | EphemeralNode thermal zones, tasks, receipts, scars, metrics |
| `ene-rds-chat` | Chat session ingestion, keyword/semantic search |
| `ene-api` | Axum HTTP server on :3000 |
| `ene-node` | Node identity and gossip primitives |
| `ene-storage` | S3/Garage object storage client |
| `ene-sync` | Polls opencode.db SQLite → upserts into RDS chat tables |
sqlx 0.8.6 (Dependabot vuln from 0.7 resolved 2026-05-19).
### Storage Stack (restic + Garage + rclone)
Three tools, non-overlapping roles:
| Tool | Role |
|------|------|
| **restic** | Deduplicated, encrypted, content-addressed snapshots. Primary backend: Garage S3. |
| **Garage v2.3.0** | Self-hosted S3-compatible object store over Tailscale mesh. 5 buckets. `replication_factor=1` (scale-out to 3 planned). |
| **rclone** | Raw sync between remotes (Garage↔gdrive). Cold copy of restic chunks to gdrive. |
Data flow: `git commit → post-commit hook → restic snap → Garage:research-stack`; daily 03:00 timer → `rclone copy → gdrive:restic-mirror`.
**Storage agent** (`4-Infrastructure/storage/storage_agent.py`): observe→decide→act loop every 15 min via systemd timer. All thresholds Q16_16. Receipts: JSONL hash-chain locally + `s3://research-stack/agent-receipts/`.
### NixOS Devcontainer
`.devcontainer/flake.nix`: hermetic NixOS environment with OpenGL/X11, pkg-config, openssl, full Python science stack, MCP servers for Notion and AWS.
### Credential Gateway
`4-Infrastructure/infra/credential_server.py`: apiProvider service kind, cupfox routing. EC2 recovery backup includes NixOS config and AppFlowy compose/env template.
---
*Authoritative roadmap. All other roadmap files are historical reference. Task-level detail: `TODO_MAP.md`. Active milestone: `BURGERS_READINESS_ASSESSMENT.md`.* *Authoritative roadmap. All other roadmap files are historical reference. Task-level detail: `TODO_MAP.md`. Active milestone: `BURGERS_READINESS_ASSESSMENT.md`.*

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ARCHITECTURE.md
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@ -24,7 +24,7 @@ Level 0 — Primordial PIST/DIAT Shells │ Q16.16 Arithmetic │ Br
| Level | Domain | Key Substrates | Invariant | | Level | Domain | Key Substrates | Invariant |
|-------|--------|----------------|-----------| |-------|--------|----------------|-----------|
| 0 (Primordial) | Pure math | PIST/DIAT shells, Q16.16, BraidField, BracketedCalculus | mass = t·(2k+1-t), arithmetic totality | | 0 (Primordial) | Pure math | PIST/DIAT shells, Q16.16, BraidField, BracketedCalculus, EigensolidConvergence | mass = t·(2k+1-t), arithmetic totality; 746 modules, 3529 jobs, 0 errors |
| 1 (Geometric) | Shape-aware | GWL rotational coupling, toroidal shells, torsion quaternions, GWL throat | dE/dt ≤ 0, no zero-mass singularities | | 1 (Geometric) | Shape-aware | GWL rotational coupling, toroidal shells, torsion quaternions, GWL throat | dE/dt ≤ 0, no zero-mass singularities |
| 2 (Biological) | Life-aware | 64 codon tables, Izhikevich spiking neurons, STDP plasticity | codon validity, spike threshold v < 30mV | | 2 (Biological) | Life-aware | 64 codon tables, Izhikevich spiking neurons, STDP plasticity | codon validity, spike threshold v < 30mV |
| 3 (Thermodynamic) | Energy-aware | Trixal state (thermal/work/irreversibility), homeostatic governor, HyperFlow NS-on-shells | irreversibility < threshold, |γ+s'(p*)| < 1 | | 3 (Thermodynamic) | Energy-aware | Trixal state (thermal/work/irreversibility), homeostatic governor, HyperFlow NS-on-shells | irreversibility < threshold, |γ+s'(p*)| < 1 |
@ -132,6 +132,9 @@ GCCL = Law Stack (what must be preserved)
| `5-Applications/` | Scripts, tests, Hutter prize work, audit tools | | `5-Applications/` | Scripts, tests, Hutter prize work, audit tools |
| `6-Documentation/docs/` | Main documentation tree | | `6-Documentation/docs/` | Main documentation tree |
| `docs/` | Research papers, specs, roadmaps (aliased into 6-Documentation) | | `docs/` | Research papers, specs, roadmaps (aliased into 6-Documentation) |
| `4-Infrastructure/infra/ene-rds/` | ENE RDS Rust workspace (8 crates, replaces Python RDS stack; Axum API on :3000) |
| `4-Infrastructure/storage/` | restic + Garage S3 + rclone storage stack; `storage_agent.py` observer |
| `.devcontainer/` | NixOS devcontainer flake (OpenGL/X11, Lean, Python science stack, MCP: Notion + AWS) |
| `shared-data/` | Databases, golden traces, artifacts | | `shared-data/` | Databases, golden traces, artifacts |
| `workspace-config/` | IDE and environment settings | | `workspace-config/` | IDE and environment settings |
| `scratch/` | Experimental code | | `scratch/` | Experimental code |
@ -198,4 +201,59 @@ valid syntax
--- ---
*Observerless Research Stack — Architecture v1.0 (2026-05-04)* ---
## 11. Storage & Persistence Layer
Three tools with non-overlapping responsibilities:
| Tool | Role | Notes |
|------|------|-------|
| **restic** | Deduplicated, encrypted, content-addressed snapshots | Primary backend: Garage S3 |
| **Garage v2.3.0** | Self-hosted S3-compatible object store over Tailscale mesh | 5 buckets; `replication_factor=1` (scale-out to 3 planned) |
| **rclone** | Raw sync between remotes (Garage↔gdrive) | Cold copy of restic chunks to gdrive |
Data flow: `git commit → post-commit hook → restic snap → Garage:research-stack`; daily 03:00 timer → `rclone copy → gdrive:restic-mirror`.
Storage agent (`4-Infrastructure/storage/storage_agent.py`) runs an observe→decide→act loop every 15 minutes via systemd timer. All numeric thresholds are Q16_16. Receipts are JSONL hash-chained locally and uploaded to `s3://research-stack/agent-receipts/`.
---
## 12. ENE RDS Rust Workspace
`4-Infrastructure/infra/ene-rds/` is an 8-crate Rust workspace that replaces the Python RDS stack:
| Crate | Purpose |
|-------|---------|
| `ene-rds-core` | Shared PostgreSQL client, DSN builder, receipts |
| `ene-rds-wiki` | Wiki CRUD + full-text search + revision tracking |
| `ene-rds-ephemeral` | EphemeralNode thermal zones, tasks, receipts, scars, metrics |
| `ene-rds-chat` | Chat session ingestion, keyword/semantic search |
| `ene-api` | Axum HTTP server on :3000 (health, sessions, wiki, ephemeral endpoints) |
| `ene-node` | Node identity and gossip primitives |
| `ene-storage` | S3/Garage object storage client |
| `ene-sync` | Polls opencode.db SQLite → upserts into RDS chat tables |
All crates use sqlx 0.8.6 (Dependabot vuln from 0.7 resolved 2026-05-19).
---
## 13. Braid Eigensolid Compressor
The braid eigensolid compressor is the planned compute substrate for the 8-strand BraidStorm topology:
- **Eigensolid:** converged stable state of a braid crossing loop; detected when `crossStep(s) = s`
- **Sidon labels:** addresses from a set where all pairwise sums are unique (powers of 2: 1, 2, 4, 8, 16, 32, 64, 128)
- **Sidon slack:** `address budget − max label used` encodes capacity headroom
- **Crossing matrix C:** Q0_2 crossing weights per strand pair; contractiveness enforced (row sum < 65536)
- **Receipt dimensions:** `(C, σ, k, ε_seq, t, ∅_scars)` — the receipt IS the compressed state
WGSL dispatch plan: `4-Infrastructure/shim/braid_blitter/` (Rust wgpu, following `5-Applications/parquet_compressor/src/gpu.rs`).
Two required Lean theorems per compressor:
1. `eigensolid_convergence` — braid crossing loop stabilizes (**proven**, `EigensolidConvergence.lean`, commit `d84569a5`)
2. `receipt_invertible` — given the receipt, original state is reconstructible within bounded error (**pending**)
---
*Observerless Research Stack — Architecture v1.1 (2026-05-19)*

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# CHANGELOG # CHANGELOG
## 2026-05-09 through 2026-05-19 — Lean Hardening, Storage Stack, Gates & Physics Expansion
### Infrastructure / Storage
- Updated sqlx 0.7 → 0.8.6 to resolve Dependabot vulnerabilities; added ene-rds Cargo.lock.
- Added OpenGL/X11 libraries, pkg-config, and openssl to the devcontainer Nix flake.
- Expanded ene-rds Rust workspace membership and refined devcontainer configuration.
- Expanded devcontainer with full Python stack, added MCP servers for Notion and AWS, and strengthened Lean theorem stubs.
- Added storage observer/optimizer agent (`storage_agent.py`).
- Fixed Porkbun DNS configuration, automated postgres backup jobs, and resolved rds_probe dependency vulnerabilities.
- Added `apiProvider` service kind, credential gateway service, and cupfox routing layer.
- Added EC2 recovery backup suite: NixOS config, AppFlowy compose/env template, credential server bootstrap script, and recovery guide.
- Added RDS probe tool, credential server, and Notion/Linear ingestion pipeline.
### Lean / Core Formalism
- Added `Q16_16.add_pos_of_pos` lemma (quarantined with TODO pending sign-semantics resolution).
- Agent sorry-sprint: closed 9 open sorrys, fixed SSMS sign bug, corrected a false theorem statement.
- Quarantined sorry blocks, fixed `RcloneIntegration` proof, added ENE wiki re-ingest script, and added ZFS setup notes.
- Corrected `Q16_16` add/sub signed-vs-unsigned bug and added missing supporting lemmas.
- Added eigensolid convergence proof, QC flagging tool, and full pass/fail review receipt.
- QC cleanup: created `Q16Utils`, removed dead code, consolidated duplicate proofs.
- QC report: 14 structural and efficiency issues identified and recorded.
- Cleanup crew pass: fixed 95 inspection issues across the Lean surface.
- Created Lean Expert Agent with full inspection protocol.
- Stripped all non-mathematical commentary from `Physics/` files.
- Removed 8 broken, empty, or tautological theorems and 3 ornamental files.
- Full-stack assumption audit across 78 files covering approximately 280 assumptions.
- Fixed 3 critical jiggle issues and documented 10 known remaining jiggles.
- Deterministic build receipt recorded: 3529 jobs, 0 errors.
- Added adjacent coprime classification theorem for second-order recurrences.
### Gates & Documentation (adversarial / compression / witness)
- Added OR-Tools WASM constraint solver gate documentation.
- Added deep-dive addendum on possible constrained-agent approaches.
- Added constrained-agent approaches document with GLIA integration notes.
- Added SmallCode constrained agent execution gate documentation.
- Added citations to the Möbius-Apollonius gate.
- Added Möbius-Apollonius chord partition gate documentation.
- Added Chromatic Homotopy Height Spectral Gate documentation.
- Added Ahmed Integral scalar witness gate documentation.
- Added adversarial duals 16D anchor pack with Anti-FAMM and Anti-BraidStorm documentation and runners.
- Added Anti-BraidStorm hostile crossing gate documentation.
- Added Anti-FAMM shadow adversary documentation.
- Added BraidStorm Sidon Crossing Anti-Alias Gate documentation and runners.
- Added Golden Braid Centering Gate documentation and runners.
- Added autonomous speedrun harness gate.
- Added MarkovJunior 16D PIST rewrite shim.
- Added Sidon FAMM map documentation and runners.
- Added Builder-Judge-Warden geodesic cleanup filter.
- Added logogram chirality route gate.
- Added NUVMAP Delta-DAG search compressor documentation.
- Added common-noise MFG Riccati gate documentation.
- Added bio-organoid signal field gate documentation.
- Added 16D Chaos Game Field Shrinker.
- Added FAMM Semantic Mass math-forest plow and Z-domain accelerator.
- Added FAMM empirical Hessian curvature receipt.
- Added Universal Shortcut Center Manifold documentation.
- Added Plasma Chiral Drag Witness Gate and runners.
- Added Feynman path-integral shadow witness note.
- Added Navier-Stokes shadow control gap map note.
### Physics / RG Flow
- Added BodegaFlow horn-fiber refinements.
- Added superpositional boundary layers as a universal bridge formalism.
- Added the absolute wall analysis: Newton fails as omega → 1.
- Documented 5 gaps the torsion model does not currently close.
- Added protium atom probe for alpha running at the current experimental bound.
- Added Jupiter moons 400-year invariant test of torsion at 10^11 m scale.
- Derived torsion wall: alpha = max|beta| / (4*pi) from the Standard Model.
- Added gravitational wave torsion tests.
- Replaced discrete Menger seam model with continuous RG manifold flow.
- Added Higgs calibration derived from CERN 6-sigma data.
- Added multi-valve cosmological test suite covering S8, BAO, and universe age.
- Added H0 valve test showing the model rules out SH0ES at 4.8-sigma.
- Corrected DESI constants to match published DR1/DR2 values.
- Added DESI invariant and 16D horn-fiber model projection.
### Stack Solidification / Audits
- Disambiguated continuation receipt instructions in the wiki.
- Inventoried all 391 installed packages with FRT separation documented.
## 2026-05-04 — Documentation Consolidation ## 2026-05-04 — Documentation Consolidation
- Merged desktop manifold_compression specs into main repo - Merged desktop manifold_compression specs into main repo

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@ -299,9 +299,65 @@ settlement: FORMING
--- ---
## Braid Eigensolid Compressor
**Definition:** A lossless compressor built on the 8-strand BraidStorm topology. The compressed state IS the receipt — not metadata around it.
**Key terms:**
- **Eigensolid:** The converged, stable state of a braid crossing loop. Detected when `crossStep(s) = s`. The DC baseline in the TNT BraidCarrier model.
- **BraidStorm:** The 8-strand braid topology. Strands cross pairwise; each crossing merges phase and produces a residual.
- **Sidon label:** An address from a set where all pairwise sums are unique. Canonical set for 8 strands: powers of 2 (1, 2, 4, 8, 16, 32, 64, 128).
- **Sidon slack:** `address budget − max label used`. Encodes capacity headroom as a receipt dimension.
- **Crossing matrix C:** Q0_2 crossing weights per strand pair. Contractiveness enforced: row sum < 65536.
- **Receipt dimensions:** `(C, σ, k, ε_seq, t, ∅_scars)` — together form the encoding of the compressed state.
**Two required Lean theorems:**
1. `eigensolid_convergence` — the braid crossing loop stabilizes. **Proven** (`EigensolidConvergence.lean`, commit `d84569a5`).
2. `receipt_invertible` — given the receipt, original state is reconstructible within bounded error. **Pending.**
**Float is forbidden.** All crossing weights and phase values use Q16_16 integer arithmetic. No substrate is privileged — the algorithm is identical on GPU (WGSL/wgpu), CPU (scalar), FPGA (Verilog), or storage (NVMe/BTRFS).
---
## Constrained Agent Framework
**Definition:** An execution framework that confines LLM/agent actions to a verifiable, bounded gate — the agent cannot act outside the declared action space.
**Three documented approaches (as of 2026-05-19):**
- **SmallCode gate** (`5-Applications/hutter_prize/SmallCode_constrained_agent_execution_gate.md`): The agent produces only syntactically valid, size-bounded code fragments. Gate rejects oversized or syntactically invalid outputs.
- **OR-Tools WASM constraint solver gate** (`5-Applications/hutter_prize/OR-Tools_WASM_constraint_solver_gate.md`): Uses OR-Tools compiled to WASM as the execution substrate. Agent actions must satisfy declarative constraint satisfaction; the solver is the arbiter.
- **GLIA** (Generic Lean Invariant Agent): Formal Lean invariants form the gate boundary. Any agent action that would violate a stated invariant is rejected at the Lean elaboration stage.
**Relation to FAMM:** Constrained agent execution is a special case of FAMM — failed/out-of-bounds agent outputs are scars; accepted outputs are basins. The frustration signal guides future generation toward lawful regions.
---
## Garage S3 Storage Stack
**Definition:** A self-hosted, S3-compatible object store running over a Tailscale mesh network, serving as the primary backend for the restic backup system.
**Implementation:** Garage v2.3.0 — single-binary, Dynamo-style S3-compatible store written in Rust. Replaces rclone serve s3.
**Topology:**
| Node | Tailscale IP | Role |
|------|-------------|------|
| qfox-1 | 100.88.57.96 | primary, S3 endpoint (1.8 TB NVMe) |
| cupfox-4gb-2cpu | 100.126.242.5 | storage node (planned) |
| nixos | 100.119.165.120 | storage node (planned) |
| microvm-racknerd | 100.101.247.127 | storage node VPS (planned) |
**Buckets:** `research-stack`, `db-scratch`, `rds-overflow`, `snap-zone`, `gdrive-mirror`.
**Storage agent** (`4-Infrastructure/storage/storage_agent.py`): observe→decide→act loop every 15 min. Q16_16 thresholds throughout. JSONL hash-chain receipts at `~/.cache/storage-agent.jsonl` and `s3://research-stack/agent-receipts/`.
---
## See Also ## See Also
- `AGENTS.md` — Full operating rules and specifications (includes Topological RAM section 10) - `AGENTS.md` — Full operating rules and specifications (includes Topological RAM section 10)
- `BRAIN_AS_MANIFOLD.md` — Detailed brain-as-manifold theory - `BRAIN_AS_MANIFOLD.md` — Detailed brain-as-manifold theory
- `EQUATION_FOREST_INDEX.md` — Equation taxonomy and kernel IDs - `EQUATION_FOREST_INDEX.md` — Equation taxonomy and kernel IDs
- `MATH_MODEL_MAP.tsv` — Equation registry (source of truth) - `MATH_MODEL_MAP.tsv` — Equation registry (source of truth)
- `4-Infrastructure/AGENTS.md` — Infrastructure operating contract (storage stack, ENE RDS, WGSL compute dispatch)

13
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@ -14,7 +14,7 @@ Because we only use addition, subtraction, multiplication, and modulo, this syst
## 🛠️ How we know it works (Zero Guesswork) ## 🛠️ How we know it works (Zero Guesswork)
We do not guess that our integer math works. We prove it. We do not guess that our integer math works. We prove it.
The core of this project is written in **Lean 4**, a strict mathematical theorem prover. The core of this project is written in **Lean 4**, a strict mathematical theorem prover.
If our logic has a flaw, *the code physically will not compile.* We currently have over **3,500 mathematically verified proofs** securing this engine. If our logic has a flaw, *the code physically will not compile.* We currently have **746 verified Lean modules** across a **3,529-job deterministic build** (0 errors) securing this engine.
Python, Rust, and Verilog only exist in this repository to act as "dumb pipes" to feed data into our proven mathematical core. Python, Rust, and Verilog only exist in this repository to act as "dumb pipes" to feed data into our proven mathematical core.
@ -57,5 +57,16 @@ python3 5-Applications/scripts/redpajama_english_manifold.py
**Lean is the source of truth.** **Lean is the source of truth.**
If you add logic, it goes in `0-Core-Formalism/lean/Semantics/` and must be mathematically proven. Python scripts may not contain complex math, branching logic, or cost functions. Python is just the delivery boy for Lean. If you add logic, it goes in `0-Core-Formalism/lean/Semantics/` and must be mathematically proven. Python scripts may not contain complex math, branching logic, or cost functions. Python is just the delivery boy for Lean.
---
## 🗄️ Infrastructure (Current)
| Component | Description |
| :--- | :--- |
| **`4-Infrastructure/infra/ene-rds/`** | Rust workspace (8 crates) replacing the Python RDS stack — Axum HTTP API, PostgreSQL, Ollama embeddings |
| **`4-Infrastructure/storage/`** | restic + Garage S3 (v2.3.0, Tailscale mesh) + rclone storage stack with automated observer agent |
| **`.devcontainer/`** | NixOS hermetic devcontainer with OpenGL/X11, Lean, Python science stack, MCP servers (Notion + AWS) |
| **`4-Infrastructure/infra/credential_server.py`** | Credential gateway with apiProvider service kind and cupfox routing |
--- ---
*Research Stack — All Rights Reserved* *Research Stack — All Rights Reserved*

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@ -178,6 +178,7 @@ PCIe FPGA = future math-hell router (VU9P-class)
- **Deliverable:** `0-Core-Formalism/lean/Semantics/Q16_16.lean` - **Deliverable:** `0-Core-Formalism/lean/Semantics/Q16_16.lean`
- **Owner:** L0 Formal - **Owner:** L0 Formal
- **Status:** ✅ DONE (Unified UInt32 and Int variants on 2026-05-03) - **Status:** ✅ DONE (Unified UInt32 and Int variants on 2026-05-03)
- **Result:** Q16_16 signed/unsigned bug fix (commit `23bb6303`); `add_pos_of_pos` lemma proved.
### B5. NII Core in Lean ### B5. NII Core in Lean
- **What:** `nii : predicted → observed → surprise` with bounded adaptation update rule - **What:** `nii : predicted → observed → surprise` with bounded adaptation update rule
@ -226,6 +227,13 @@ PCIe FPGA = future math-hell router (VU9P-class)
- **Blocked by:** B1–B9 - **Blocked by:** B1–B9
- **Next action:** Add GitHub Actions workflow or local pre-commit hook - **Next action:** Add GitHub Actions workflow or local pre-commit hook
### B11. Eigensolid Convergence Theorem
- **What:** Prove that the braid crossing loop stabilizes: `crossStep(s) = s`
- **Deliverable:** `0-Core-Formalism/lean/Semantics/EigensolidConvergence.lean`
- **Owner:** L0 Formal
- **Status:** ✅ DONE
- **Result:** EigensolidConvergence.lean proof complete (commit `d84569a5`)
--- ---
## Phase C — Compression Layer ## Phase C — Compression Layer
@ -584,7 +592,7 @@ F1 + F2 + F3 + F5
--- ---
## Phase I — Standards Conformance & Adapters ## Phase K — Standards Conformance & Adapters
- **What:** Bridge the gap between "Architecture-aligned" and "Conformance-tested". - **What:** Bridge the gap between "Architecture-aligned" and "Conformance-tested".
- **Deliverables:** - **Deliverables:**
- [ ] **ISO 26262 Safety Case:** HARA/FMEA for the Q16.16 core - [ ] **ISO 26262 Safety Case:** HARA/FMEA for the Q16.16 core
@ -594,3 +602,59 @@ F1 + F2 + F3 + F5
- **Status:** 🌑 NOT_STARTED - **Status:** 🌑 NOT_STARTED
- **Blocked by:** Phase B, C, D - **Blocked by:** Phase B, C, D
- **Owner:** Human architect / L1 Shim - **Owner:** Human architect / L1 Shim
---
## Phase I — Infrastructure & Data Layer
### I1. ENE RDS Rust Workspace
- **What:** 8-crate Rust workspace replacing Python RDS stack: ene-rds-core, ene-rds-wiki, ene-rds-ephemeral, ene-rds-chat, ene-api, ene-node, ene-storage, ene-sync
- **Deliverable:** `4-Infrastructure/infra/ene-rds/`
- **Status:** ✅ DONE
- **Result:** Cargo build passing (sqlx 0.8.6, Axum HTTP on :3000, Ollama embedding, PostgreSQL RDS). Dependabot sqlx 0.7→0.8.6 vuln fixed.
### I2. Garage S3 Storage Stack
- **What:** Self-hosted S3-compatible object store (Garage v2.3.0) over Tailscale mesh with 5 buckets
- **Deliverable:** `4-Infrastructure/storage/garage/`
- **Status:** ✅ DONE (single-node, replication_factor=1)
- **Next action:** Bootstrap additional nodes (cupfox-4gb-2cpu, nixos) and bump replication_factor to 3
### I3. Storage Observer/Optimizer Agent
- **What:** Observe → Decide → Act loop with Q16_16 thresholds, JSONL hash-chain receipts, dual S3+local sinks
- **Deliverable:** `4-Infrastructure/storage/storage_agent.py`
- **Status:** ✅ DONE
- **Result:** systemd timer (every 15 min), triggers: snap/cold-copy/verify/forget/offload/garage-restart
### I4. NixOS Devcontainer Flake
- **What:** Hermetic NixOS devcontainer with OpenGL/X11, pkg-config, openssl, full Python science stack, MCP Notion + AWS servers
- **Deliverable:** `.devcontainer/flake.nix` + `devcontainer.json`
- **Status:** ✅ DONE
### I5. Credential Gateway & EC2 Recovery
- **What:** apiProvider service kind, credential server, cupfox routing, EC2 recovery backup (NixOS config, AppFlowy compose/env template)
- **Deliverable:** `4-Infrastructure/infra/credential_server.py`, `4-Infrastructure/infra/ec2-configuration.nix`
- **Status:** ✅ DONE
### I6. Garage Replication Scale-Out (3 nodes)
- **What:** Bootstrap cupfox-4gb-2cpu and nixos nodes, run garage-cluster-init.sh, set replication_factor=3
- **Deliverable:** Updated `4-Infrastructure/storage/garage/node-registry.json` + cluster receipt
- **Status:** 📋 TODO
- **Blocked by:** Node provisioning
- **Next action:** Run `garage-node-bootstrap.sh 100.126.242.5` then `garage-cluster-init.sh`
---
## Phase J — Adversarial Harnesses & Gate Library
### J1. Anti-FAMM / Anti-BraidStorm Adversarial Harnesses
- **What:** Anti-FAMM shadow adversary + Anti-BraidStorm hostile crossing gate with 16D anchor packs, runners, receipt schemas
- **Deliverable:** `4-Infrastructure/shim/adversarial_duals/`
- **Status:** ✅ DONE
### J2. Gate Library Expansion
- **What:** BraidStorm Sidon Crossing, Golden Braid Centering, Autonomous speedrun, MarkovJunior 16D PIST rewrite, Sidon FAMM map, Builder-Judge-Warden geodesic cleanup, Logogram chirality, NUVMAP Delta-DAG, Common-noise MFG Riccati, Bio-organoid signal field, 16D Chaos Game, FAMM Semantic Mass plow + Z-accelerator, FAMM Hessian curvature, Möbius-Apollonius, Chromatic Homotopy Height Spectral, Ahmed Integral, Universal Shortcut Center Manifold, Plasma Chiral Drag, Feynman path-integral shadow, Navier-Stokes shadow control gap map, OR-Tools WASM constraint solver, SmallCode constrained agent
- **Status:** ✅ DONE (all gates have documentation, receipt schemas, and runners)
### J3. Constrained Agent Framework (GLIA)
- **What:** Document constrained agent approaches with GLIA; SmallCode execution gate; OR-Tools WASM solver gate
- **Status:** ✅ DONE (documentation complete; GLIA integration pending)