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Author SHA1 Message Date
devin-ai-integration[bot]
6db78dccf3 test(coverage): add 138 unit tests for least-covered modules (#78) 
Four test files covering the modules with zero or near-zero test coverage:

- scripts/qc-flag/test_lean_qc_flagger.py (55 tests)
  Covers all pure helpers, code-line detection, QCIssue/FileResult classes,
  and all 5 check functions (structural, naming, Q16, proof quality, deps).

- 4-Infrastructure/shim/test_braid_diat_codec.py (22 tests)
  Covers Q0_2 encode/decode, ChiralityDIAT roundtrips and verify_b,
  MountainPacked dict↔bytes, BraidResidualPacked bracket↔bytes.

- 5-Applications/tools-scripts/llm/test_emitter_utils.py (33 tests)
  Covers sha256_bytes, canonical_json_bytes, repo_relative, safe_slug,
  timestamps, context bundles, message building, extract_answer,
  auth guard, and verify_receipt schema rules.

- 4-Infrastructure/shim/test_validate_rrc_predictions.py (28 tests)
  Covers require_path, parse_equation, build_proof_metrics,
  build_receipt with all domain mappings, and MATH_* constant sets.

Build: all 138 tests pass (pytest), py_compile clean

Co-authored-by: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com>
Co-authored-by: Allaun Silverfox <bigdataiscoming+9i37y6j2@protonmail.com>
 2026-06-14 19:31:16 -05:00
devin-ai-integration[bot]
471e8f21e8 fix(scripts): replace bare except clauses with specific exception types (#77) 
Replace 30+ bare `except:` and `except: pass` patterns across 17 files
with specific exception types (OSError, ValueError, etc.) and add
logging so errors are no longer silently swallowed.

Changes by category:

Infrastructure (surface/main.py):
- GPU/process probes now catch FileNotFoundError | SubprocessError

Application scripts:
- API fetchers (finalize_database, final_push, bulk_10x) now catch
  URLError | JSONDecodeError | KeyError | OSError and print to stderr
- Hardware probes (unified_hardware_surface, swarm_transport_layer)
  catch OSError | ValueError for /proc/meminfo reads
- Backend availability checks (prover_backend_interface, hot_swap_manager)
  catch requests.RequestException and log at debug/warning
- Code inspector (swarm_system_inspector) catches OSError | UnicodeDecodeError
  for file reads
- Model fallback (map_all_equations) now logs the intermediate error
- Minor: gpu_pist_compress → RuntimeError | ZeroDivisionError,
  mathlib_to_parquet → ValueError, moe_utils → OSError,
  quandela_remote → OSError | IndexError, topology inline scripts
  → ImportError, consolidate_language_databases → UnicodeDecodeError

All touched files pass py_compile.

Co-authored-by: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com>
Co-authored-by: Allaun Silverfox <bigdataiscoming+9i37y6j2@protonmail.com>
 2026-06-14 19:30:28 -05:00
Brandon Schneider
aba1fba7ad fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 
Security & correctness fixes from full adversarial review:

Lean (7 fixes):
- FixedPoint.lean: guard false theorem with n > 0 precondition
- QFactor.lean: remove double-scaling error in energy decrease
- AVMIsa/Step.lean: implement addSatQ16/subSatQ16 primitives
- BraidEigensolid.lean: fix crossStep second output argument swap
- SSMS.lean: complete ACI preservation proof (with rounding caveat)
- HouseholderQR.lean: add n > 0 precondition to spectral theorem

Verilog (7 fixes):
- q16_lut_core.v: fix multiply shift (16 → 32 bits)
- q16_lut_top.v: fix valid bit (0 → 1)
- cff_accelerator.v: fix SHA-256 padding (len < 448 check)
- research_stack_top.v: fix trigger aliasing (unique counters)
- Blitter6502OISC_small.v: fix address width (15 → 16 bits)
- spatial_hash_bram.v: add OOB write guard
- tmr_oepi_safety_fsm.v: fix double-increment race

WGSL (6 fixes):
- shaders.wgsl: atomicAdd for concurrent writes
- frustration_qubo.wgsl: double-buffer + CAS loop
- braid_fft.wgsl: workgroupBarrier synchronization
- burgers_scar_filter.wgsl: atomic E_bins array

Rust (9 fixes):
- thermodynamic.rs: Arc::from_raw → Arc::clone (double-free)
- thermodynamic.rs: Box::into_raw → Box (leak)
- tools/src/lib.rs: shell injection → shlex.quote
- ene-node/src/lib.rs: LRU caps, constant-time HMAC, peer caps

Python (6 fixes):
- similarity/__init__.py: pickle.load → RestrictedUnpickler
- AI-Feynman: torch.load → weights_only=True (14 calls)
- fetch_arxiv.py, fetch_s2.py: eval → ast.literal_eval
- topology.py: os.system → shutil.copy2
- SSH pipe: os.system → base64 pipe

Build: lake build 3572 jobs, 0 errors
 2026-05-31 23:38:03 -05:00
Brandon Schneider
9c5fe97dc1 feat(infra): SPIR-V packet generator and WGSL scar filter shader 
Add spirv_packet_generator.py: reads SPIR-V assembly, applies copy-if
optimization (OpPhi→OpSelect transform), and emits JSON packet descriptors
with the 5 OpPhi-derived fields (type_id, cond_id, true_val_id,
false_val_id, result_id) that fully specify the packet layout.

Add burgers_scar_filter.wgsl: 291-line WGSL compute shader for spectral
scar filtering in 2D Burgers RG solver. Uses three copy-if patterns:
  1. scar_pressure > threshold → apply hyperviscosity damping
  2. |kx| > k_cut || |ky| > k_cut → zero (dealiasing)
  3. factor < 0.999 → multiply velocity components

Also fix spirv_copy_if_optimizer.py: OpSelect now uses phi_instr.args[0]
(type operand) as its type, instead of compute_instr.result_id. This
produces structurally correct SPIR-V where the result type matches the
OpSelect opcode layout.

Build: 3313 jobs, 0 errors (lake build)
Tools: glslang, spirv-as, spirv-dis (native); tint from nixpkgs for WGSL
 2026-05-30 16:40:58 -05:00
Brandon Schneider
b2473472fc feat: Morton-code indexed spatial hash — memory-bandwidth optimized 
Key optimization: Morton code (Z-order curve) replaces linear index.
3D spatial locality preserved in 1D address → cache hit rate 30% → 80%.

shaders-optimized.wgsl:
  - Morton code hash: spreadBits/compactBits for 3D→1D mapping
  - SoA layout: separate buffer per field (coalesced access)
  - Shared memory tiling: 4×4×4 tile for neighbor scan (27 reads → 1)
  - Bitonic sort in shared memory (no global memory traffic)
  - Bit-packed coordinates: x(10)+y(10)+z(10)+mode(2) = 32 bits
  - Persistent kernel pattern
  - 6 compute + 2 render shaders

grid-storage-optimized.js:
  - Morton code JS implementation (matching WGSL)
  - SoA buffers (one GPUBuffer per field)
  - Memory bandwidth monitoring (p50/p99 latency)
  - Arrow/Parquet-compatible export (SoA is already columnar)
  - Benchmark mode (1000 iterations)

Performance (H100 extrapolated):
  Insert 1B particles: 3ms (was 100ms on RTX 4070)
  Neighbor scan 256³: 0.01ms (cache hit 80% vs 30%)
  Sort by density: 0.005ms (shared memory bitonic)
  Effective bandwidth: 2.68 TB/s (was 151 GB/s)
  Per-particle cost: 100,000× lower
 2026-05-30 02:19:48 -05:00
Brandon Schneider
09c47ad94e feat: LyteNyte-style spatial hash dashboard (standalone HTML) 
Virtualized table showing 4096 spatial hash cells:
- Sort by any column (density, FD, mode, particles, neighbor)
- Filter by voltage mode (STORE/COMPUTE/APPROX/MORPHIC)
- Filter by density threshold
- 3×3×3 neighbor scan
- Row selection with detail panel
- Keyboard shortcuts: 1-6 for operations
- Virtual scroll (only renders visible rows)
- Color-coded voltage modes
- Density/FD bar visualization

No build step, no dependencies, standalone HTML.
Opens in any browser.
 2026-05-30 01:52:20 -05:00
Brandon Schneider
1280ff3580 feat: WebGPU spatial hash storage — GPU-as-database prototype 
LyteNyte grid structure stored directly in GPU memory:
- 16×16×16 = 4096 cells as WebGPU storage buffer
- Compute shaders: insert, clear, neighbor, filter, sort, aggregate
- Render pipeline: instanced quads, color by voltage mode
- Zero CPU-GPU copies: data stays in GPU memory
- LyteNyte-style API: insert(), filter(), sort(), group(), aggregate()
- Parquet/Arrow-compatible export

Keyboard: 1=insert, 2=clear, 3=filter, 4=neighbor, 5=sort, 6=modes
Mouse: drag=orbit, scroll=zoom
HUD: FPS, cell count, filter matches, max density, per-mode counts

Files:
  shaders.wgsl — 6 compute + 2 render shaders
  index.html — self-contained, no build step
  grid-storage.js — LyteNyte-style GridStorage class
 2026-05-30 01:51:12 -05:00
Brandon Schneider
1d91183d1b fix: reed_solomon_vcn decode_rs return type (tuple → bytes extraction) 2026-05-28 17:35:55 -05:00
Brandon Schneider
53e38e4c71 feat: 12 math enhancements — Q16 LUT, braid VCN encoder, FPGA Verilog, FFT, crypto 
Pipeline:
- q16_lut_vcn.py: Q16_16 LUT generation + VCN frame encoding (8 ops)
- braid_vcn_encoder.py: Delta+RLE → RS ECC → ChaCha20 → VCN → MKV
- braid_search.py: Sidon set slots, soliton search, QUBO optimization
- test_braid_pipeline.py: 67 tests covering full round-trip

WebGPU/Scripts:
- braid_fft.wgsl: Cooley-Tukey radix-2 FFT on phase vectors
- reed_solomon_vcn.py: Reed-Solomon ECC for VCN frame data
- chacha20_braid.py: ChaCha20 encryption + key derivation
- polynomial_commitment.py: KZG scheme for receipt verification

Lean:
- BraidBitwiseODE.lean: XOR crossing, O(1) integration, 2 proved theorems

FPGA (Tang Nano 9K):
- q16_lut_core.v: 8-op arithmetic, 2-stage pipeline, BRAM reciprocal
- braid_crossing_core.v: 4-stage crossing residual, 7 Q16 instances
- Testbenches with edge cases + VCD dumps
 2026-05-28 14:49:26 -05:00
Brandon Schneider
683bde4af6 feat(infra): WebRTC bridge + Caddy edge config + Tailscale Funnel 
WebRTC bridge (5-Applications/webrtc-bridge/):
- Go signaling server with pion/webrtc v4 + gorilla/websocket
- Browser client with dark UI, RTT/ICE metrics, request builder
- HTTP proxy over WebRTC data channel to Traefik
- k3s deployment on 361395-1 with hostNetwork
- Traefik IngressRoute at /webrtc with stripPrefix middleware
- Bypasses Tailscale DERP relay latency (~129ms → direct P2P)

Caddy edge config (5-Applications/caddy-edge/):
- Caddyfile with Porkbun DNS-01 challenge
- JSON config with explicit TLS connection policies
- k3s deployment on 361395-1 with hostNetwork
- Note: TLS handshake fails in Caddy 2.10.2 (internal error)
  despite certs being loaded. Using Tailscale Funnel instead.

Infrastructure fixes:
- Tailscale Funnel enabled on 361395-1 → Traefik
- Traefik ingress for 361395-1.tail4e7094.ts.net → Homer
- Funnel hostname: https://361395-1.tail4e7094.ts.net
 2026-05-28 13:11:53 -05:00
Brandon Schneider
ed98817257 feat(infra): cluster dashboard + VCN shim indentation fix 
- Add LyteNyte Grid cluster dashboard (React + FastAPI + k3s)
  - Real-time telemetry: GPU util/VRAM/temp, CPU/memory, pod counts,
    Tailscale connectivity, OS/kernel info for all 5 cluster nodes
  - WebSocket live updates every 3s, dark theme, virtualized grid
  - k3s deployment with hostNetwork, NodePort 30820, SSH-based collectors
  - Backend uses /proc/stat + /proc/meminfo for portable NixOS metrics
  - Tailscale status via SSH to host (container doesn't run tailscaled)
- Fix vcn_compute_substrate.py indentation (lines 45-269 had 1 extra
  leading space). Script now compiles and runs encode/decode/receipt.

Build: py_compile OK, npm build OK, podman build OK
 2026-05-28 01:13:54 -05:00
Brandon Schneider
6679908f7b fix(arch): enforce Lean-first hierarchy across project — remove all secondary-Lean language 
Project-wide sweep to find and fix every place Lean was treated as secondary,
optional, or subordinate to Python/Rust. The invariant: Lean is the source of
truth. Python and Rust are extraction targets only; they contain no logic, no
invariant checks, no decisions.

Changes:

1-Distributed-Systems/ene/src/lib.rs
  - CRITICAL: Remove 'Rust is the canonical implementation language for
    operational components' — replace with correct extraction-target framing

1-Distributed-Systems/agents/claw/README.md
  - Remove 'canonical implementation lives in rust/' and 'source of truth is
    ultraworkers/claw-code' blanket claims — scope to CLI binary only;
    add Research Stack domain-logic note (Lean is source of truth per AGENTS.md)
  - 'canonical Rust workspace' → 'Rust workspace (I/O extraction target)'

1-Distributed-Systems/agents/claw/src/Tool.py
  - 'Python-first porting summary' → 'Lean-to-Python extraction summary'

1-Distributed-Systems/agents/claw/src/projectOnboardingState.py
  - python_first: bool = True → lean_first: bool = True (Lean always leads)

6-Documentation/docs/specs/ENE_MEMORY_ATLAS_SPEC.md
  - CRITICAL: 'Python first (reference) ... Lean-formal next' → correct order:
    Lean specification first, Python extraction shim, Verilog hardware extraction

6-Documentation/docs/recovered/geocognition_equation_types_map.mmd
  - 'Lean owns logic; Rust owns boundary' → 'Lean owns all logic and decisions;
    Rust is boundary shim only'

6-Documentation/docs/semantics/HYPER_DIMENSIONAL_PHYSICS_INTRO.md
  - 'Python implementation ... Lean formalization' → 'Lean specification (source
    of truth) ... Python extraction shim'

6-Documentation/docs/geometry/GEOMETRY_TAXONOMY_FOR_NLOCAL_ADAPTATION.md
  - 'reference specification for the Python implementation' → 'source of truth;
    Python is an extraction shim against this spec'

6-Documentation/docs/protocols/TM_MCP_SPECIFICATION.md
  - 'Python reference implementation' → 'Python extraction shim' (×2)

5-Applications/scripts/snn/README.md
  - 'deterministic Python reference' → 'Python extraction shim / golden-vector
    harness'; add TODO(lean-port) note; RTL must match 'Python shim (pending
    Lean golden vector)' not 'Python reference'

6-Documentation/docs/METAPROBE_APPROACH.md
  - 'DeltaGCLCompression.lean — Lean implementation / scripts/delta_gcl_encoder.py
    — Python reference implementation' → Lean is source of truth / Python is
    extraction shim

Generated with Devin (https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
 2026-05-26 22:40:03 -05:00
Brandon Schneider
3044f36df7 docs(agents): project-wide AGENTS.md audit — cross-refs, baseline, contracts 
Actions taken from 5-agent audit sweep (audit date 2026-05-26):

AGENTS.md / docs sync:
- root AGENTS.md: add scripts/qc-flag and lean_expert_agent to Nested Contracts
- All 6 nested AGENTS.md files: append Cross-References section pointing to
  root for Post-Interaction Workflow, Programming Choice Flow, Do Not Sweep,
  Git Remote Hygiene (Lean, Infra, text-to-cad, docs, qc-flag, lean_expert_agent)
- 6-Documentation/docs/AGENTS.md: cross-ref also lists AVMIsa.Emit sole output
  boundary and Compiler surface blessing

Lean build baseline:
- 0-Core-Formalism/lean/Semantics/AGENTS.md: update blessed Compiler Surface
  header to commit 49f0dfb3; correct job count to 3311 (lake build Compiler)

ARCHITECTURE.md:
- §7 repo table: add RRC.Emit, AVMIsa.Emit, RRC.Corpus278 to Lean/Semantics entry
- New §7.1 Compiler Surface: documents 3-root pipeline and sole output boundary
- §4 Data Flow: annotate output with AVMIsa.Emit sole-boundary note

TODO_MAP.md:
- Phase A6: add 3 new Lean deliverables (Corpus278, RRC.Emit, AVMIsa.Emit);
  update status/result with Compiler build baseline; refine next action

Build: Compiler 3311 jobs, 0 errors (no Lean changes).

Generated with Devin (https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
 2026-05-26 22:34:46 -05:00
Allaun Silverfox
5579ffa046 chore(pending): quarantine python Notion+Linear MCP server (Lean-first unification) 2026-05-26 17:59:19 -05:00
Allaun Silverfox
f9778f3fb3 chore(pending): quarantine python MCP server (Lean-first unification) 2026-05-26 17:56:25 -05:00
Allaun Silverfox
ceb6a91d97 cleanup(ene): load node list from nodes.yaml instead of hardcoded hostnames 2026-05-26 17:16:02 -05:00
Allaun Silverfox
a5a10723ab cleanup(ene): use nodes.yaml inventory instead of hardcoded host resource map 2026-05-26 17:15:50 -05:00
Allaun Silverfox
87e5eb33a7 cleanup(ene): make obsidian shim provenance configurable and schema-complete 2026-05-26 16:54:12 -05:00
Allaun Silverfox
e36cff917b cleanup(ene): make provenance node/tailscale configurable via env vars and CLI arg 2026-05-26 16:42:03 -05:00
Allaun Silverfox
1181849cea cleanup(ene): make provenance node/tailscale configurable via env vars and CLI arg 2026-05-26 16:40:35 -05:00
Brandon Schneider
8f3d83745b Patch NoDupe qs vulnerability 2026-05-25 20:52:25 -05:00
Brandon Schneider
d4180194d7 archive: remove experimental tools-scripts, scripts, and shim probes 
- Move 38 experimental tools-scripts directories to archive/ (famm, ptos, crypto, market, geoweird, cognitive, carrier, tsm, semi_jack, hachimoji, chemistry, bt20, optimization, gpgpu, hardware, infrastructure, defense, security, connectome, encoding, formula_optimization, manifold, metafoam, model, verifier, substrate, audio, ingestion, literature, domain, crossbreed, external, physics, pipeline, design, classification, database, dashboard, monitor, braid, compression, waveprobe, data, ingested, demo, publish, blockchain, regret, simulation, build)
- Move 386 one-shot scripts to archive/ (ask_swarm*, execute*, swarm_* probes, test_* scripts, computational controllers, topology experiments, shell scripts)
- Move 2124 experimental shim probe files to archive/ (research probes, prior*, metaprobe*, erdos*, blockchain*, hutter*, tang9k*, stellar_gas*, enwiki*, quandela* probes, experimental shell scripts, ffmpeg-plugins, erdos_surface_orchestrator, codebase-memory, receipts, data files, MCP bus probes)
 2026-05-25 18:14:31 -05:00
Brandon Schneider
073a70eb86 WIP: accumulated changes 2026-05-25 16:24:21 -05:00
dependabot[bot]
b61f14f6bc Bump dashmap 
Bumps the parquet-cargo-minor-patch group in /5-Applications/parquet_compressor with 1 update: [dashmap](https://github.com/xacrimon/dashmap).

Updates `dashmap` from 6.1.0 to 6.2.1
- [Release notes](https://github.com/xacrimon/dashmap/releases)
- [Commits](https://github.com/xacrimon/dashmap/compare/v6.1.0...v6.2.1)

---
updated-dependencies:
- dependency-name: dashmap
  dependency-version: 6.2.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: parquet-cargo-minor-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
(cherry picked from commit 6a5703df97d971e85fbb1fdf49b54617bda6100f)
 2026-05-20 23:03:27 -05:00
dependabot[bot]
ea7d3b94c3 Bump itertools in /5-Applications/parquet_compressor 
Bumps [itertools](https://github.com/rust-itertools/itertools) from 0.12.1 to 0.14.0.
- [Changelog](https://github.com/rust-itertools/itertools/blob/master/CHANGELOG.md)
- [Commits](https://github.com/rust-itertools/itertools/compare/v0.12.1...v0.14.0)

---
updated-dependencies:
- dependency-name: itertools
  dependency-version: 0.14.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
(cherry picked from commit b5d6ea5e7e9b4be35cf17b734bf9e21ae570a032)
 2026-05-20 23:03:27 -05:00
dependabot[bot]
fea92c6c9a Bump indicatif in /5-Applications/parquet_compressor 
Bumps [indicatif](https://github.com/console-rs/indicatif) from 0.17.11 to 0.18.4.
- [Release notes](https://github.com/console-rs/indicatif/releases)
- [Commits](https://github.com/console-rs/indicatif/compare/0.17.11...0.18.4)

---
updated-dependencies:
- dependency-name: indicatif
  dependency-version: 0.18.4
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
(cherry picked from commit 1b51e05db59c69a3d613e7a41eb76cbffc216400)
 2026-05-20 23:03:27 -05:00
dependabot[bot]
47964b85f2 Bump the notion-tauri-cargo-minor-patch group 
Bumps the notion-tauri-cargo-minor-patch group in /5-Applications/notion-native-tauri with 2 updates: [tauri](https://github.com/tauri-apps/tauri) and [tauri-build](https://github.com/tauri-apps/tauri).

Updates `tauri` from 2.11.1 to 2.11.2
- [Release notes](https://github.com/tauri-apps/tauri/releases)
- [Commits](https://github.com/tauri-apps/tauri/compare/tauri-v2.11.1...tauri-v2.11.2)

Updates `tauri-build` from 2.6.1 to 2.6.2
- [Release notes](https://github.com/tauri-apps/tauri/releases)
- [Commits](https://github.com/tauri-apps/tauri/compare/tauri-build-v2.6.1...tauri-build-v2.6.2)

---
updated-dependencies:
- dependency-name: tauri
  dependency-version: 2.11.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: notion-tauri-cargo-minor-patch
- dependency-name: tauri-build
  dependency-version: 2.6.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: notion-tauri-cargo-minor-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
(cherry picked from commit ca226eb8cbad60de00487216277d0257c642d700)
 2026-05-20 23:03:27 -05:00
dependabot[bot]
fcf2474fd1 Bump the linear-tauri-cargo-minor-patch group 
Bumps the linear-tauri-cargo-minor-patch group in /5-Applications/linear-native-tauri with 2 updates: [tauri](https://github.com/tauri-apps/tauri) and [tauri-build](https://github.com/tauri-apps/tauri).

Updates `tauri` from 2.11.1 to 2.11.2
- [Release notes](https://github.com/tauri-apps/tauri/releases)
- [Commits](https://github.com/tauri-apps/tauri/compare/tauri-v2.11.1...tauri-v2.11.2)

Updates `tauri-build` from 2.6.1 to 2.6.2
- [Release notes](https://github.com/tauri-apps/tauri/releases)
- [Commits](https://github.com/tauri-apps/tauri/compare/tauri-build-v2.6.1...tauri-build-v2.6.2)

---
updated-dependencies:
- dependency-name: tauri
  dependency-version: 2.11.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: linear-tauri-cargo-minor-patch
- dependency-name: tauri-build
  dependency-version: 2.6.2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: linear-tauri-cargo-minor-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
(cherry picked from commit 58850d0106485de31fa48e0232407f0d8ce334b1)
 2026-05-20 23:03:27 -05:00
dependabot[bot]
a442e24081 Bump the cargo group across 3 directories with 1 update 
Bumps the cargo group with 1 update in the /2-Search-Space/search/stract directory: [openssl](https://github.com/rust-openssl/rust-openssl).
Bumps the cargo group with 1 update in the /2-Search-Space/search/stract/crates/leechy-py directory: [openssl](https://github.com/rust-openssl/rust-openssl).
Bumps the cargo group with 1 update in the /5-Applications/teleport-kanban directory: [openssl](https://github.com/rust-openssl/rust-openssl).

Updates `openssl` from 0.10.79 to 0.10.80
- [Release notes](https://github.com/rust-openssl/rust-openssl/releases)
- [Commits](https://github.com/rust-openssl/rust-openssl/compare/openssl-v0.10.79...openssl-v0.10.80)

Updates `openssl` from 0.10.79 to 0.10.80
- [Release notes](https://github.com/rust-openssl/rust-openssl/releases)
- [Commits](https://github.com/rust-openssl/rust-openssl/compare/openssl-v0.10.79...openssl-v0.10.80)

Updates `openssl` from 0.10.79 to 0.10.80
- [Release notes](https://github.com/rust-openssl/rust-openssl/releases)
- [Commits](https://github.com/rust-openssl/rust-openssl/compare/openssl-v0.10.79...openssl-v0.10.80)

---
updated-dependencies:
- dependency-name: openssl
  dependency-version: 0.10.80
  dependency-type: indirect
  dependency-group: cargo
- dependency-name: openssl
  dependency-version: 0.10.80
  dependency-type: indirect
  dependency-group: cargo
- dependency-name: openssl
  dependency-version: 0.10.80
  dependency-type: indirect
  dependency-group: cargo
...

Signed-off-by: dependabot[bot] <support@github.com>
(cherry picked from commit 4163e69bafc86fd27dc4535747c75e39db822f57)
 2026-05-20 23:02:48 -05:00
Brandon Schneider
a4a5a4027c feat(ene): replace legacy Python mesh with Rust crates 2026-05-20 18:46:18 -05:00
Brandon Schneider
fd863af6fd Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 
- .devcontainer/Dockerfile: add PostgreSQL client libs, OpenSSL/libffi headers, gfortran/BLAS for scipy, rclone; install full Python dependency set (boto3, psycopg2-binary, fastapi, uvicorn, notion-client, httpx, pytest, numpy, scipy, etc.) in uv-managed venv; add rclone S3 gateway init script as ENTRYPOINT
- .devcontainer/devcontainer.json: switch from build to pre-built image (localhost/research
 2026-05-19 01:52:14 -05:00
Brandon Schneider
c957fac96e Add EC2 recovery backup: NixOS config, AppFlowy compose/env template, credential server bootstrap, recovery guide 
- ec2-configuration.nix: full NixOS config for aws-nixos-node-1
- docker-compose.minimal.yml: AppFlowy Cloud compose with search_path fix
- .env.example: sanitized AppFlowy env template
- nixos-setup-cred-server.sh: credential server bootstrap
- RECOVERY.md: step-by-step rebuild instructions
- .gitignore: secrets dir excluded
- credential_provider.py reverted to repo HEAD (EC2 had hardcoded AWS creds)
- racknerd_root.txt removed from working tree
 2026-05-18 10:44:23 -05:00
Brandon Schneider
c5b6a31a8b feat: add RDS probe tool, credential server, and Notion/Linear ingestion pipeline 
New infrastructure components:
- rds_probe: Rust database inspection tool with IAM auth
- credential_server.py: REST credential provider server
- credential_provider.py: credential resolution chain
- ene_rds_fractal_fold.py / ene_rds_wiki_layer.py: RDS-backed ENE layers
- import_dumps_to_rds.py / export_linear_from_rds.py: ingestion pipeline
- recover_credential_server.sh: deployment script (sanitized)

Sanitize hardcoded secrets across codebase:
- Strip API keys from recover_credential_server.sh → env var lookups
- Replace hardcoded Wolfram appid (HYJE3R3R63) → env var in 5 scripts
- Strip fallback key values from config/index.js
- Add .claude/ and optimized_basis_v3.bin to .gitignore

Ingested 2,685 records into RDS: 2,421 Linear issues + 264 wiki pages
 2026-05-18 00:31:44 -05:00
Allaun Silverfox
80a3d4f202 Add Anti-FAMM/Anti-BraidStorm adversary runner 2026-05-17 15:10:31 -05:00
Brandon Schneider
5a763468c9 integrate infrastructure config, axiom cleanup, and documentation updates 
- cupfox-config.nix: add Open WebUI container with chat.researchstack.info proxy,
  gather-metrics service/timer, rclone, and tmpfiles for persistent storage
- Lean semantics: reduce axiom count from 109 to 18 across 10 files;
  FixedPoint now 0 axioms, 0 sorries with 12 theorems
- Documentation: update AGENTS.md with current axiom/sorry counts and
  FixedPoint status; refine bind signature
- Add topology scripts, CGA/FAMM/GeneticOptimizer/MMRFAMM Lean modules,
  devcontainer config, MEMORY.md, and Modelfile
 2026-05-17 12:03:19 -05:00
Allaun Silverfox
0c085053cf Add Plasma Chiral Drag Witness runner 2026-05-17 10:11:38 -05:00
Allaun Silverfox
0d9b434357 Add BraidStorm Sidon Crossing Anti-Alias runner 2026-05-16 20:54:30 -05:00
Allaun Silverfox
64522343dc Add Golden Braid Centering Gate runner 2026-05-16 19:46:13 -05:00
Allaun Silverfox
6aba73e780 Add autonomous speedrun harness gate runner 2026-05-16 19:09:42 -05:00
Allaun Silverfox
683e931915 Add MarkovJunior 16D shim runner 2026-05-16 18:42:25 -05:00
Allaun Silverfox
ebd9ef82b2 Add Sidon FAMM map runner 2026-05-16 17:18:49 -05:00
Allaun Silverfox
32fd7f759e Add Builder-Judge-Warden geodesic cleanup runner 2026-05-16 16:59:26 -05:00
Allaun Silverfox
02471b9dde Add logogram chirality route gate runner 2026-05-16 16:31:01 -05:00
Allaun Silverfox
20fbc7a940 Add NUVMAP Delta-DAG graph coloring compressor 2026-05-16 16:13:58 -05:00
Allaun Silverfox
733c454d5d Add 16D Chaos Game field shrinker runner 2026-05-16 14:39:56 -05:00
Allaun Silverfox
f4a4ef30b0 Add Semantic Mass route plow runner 2026-05-16 13:41:51 -05:00
Allaun Silverfox
ac0f959cf6 Add Semantic Mass Z-domain accelerator runner 2026-05-16 13:24:51 -05:00
Allaun Silverfox
0f733d03ff Add FAMM empirical Hessian receipt runner 2026-05-16 13:14:33 -05:00
Brandon Schneider
a6311ed940 chore: preserve working tree before secure wipe 
- Update .gitignore with **/target/ for Rust build artifacts
- Add eval receipts to UniversalBridge.lean (compile-time verification comments)
- Add PCIe Idle-Cycle Compute Harvester to ROADMAP.md
- Clean up deprecated scripts, generated Verilog, and old tools (23 deletions)
- Stage new infrastructure: Xen/Alpine embedded surface, QFOX topology manager
- Stage new probes: boundary activation field, holographic carving
- Stage new applications: finance manager, script roots
- Stage new research spec: PCIe idle-cycle substrate
 2026-05-13 17:36:02 -05:00
Brandon Schneider
d14d6b4b25 Refactor provenance sources for open witness backends 2026-05-12 05:57:04 -05:00