Research-Stack/6-Documentation/docs/provenance/ALPHAFOLD_BULK_STRUCTURE_PRIOR_SOURCES.cff
2026-05-11 22:18:31 -05:00

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cff-version: 1.2.0
message: "If you use AlphaFold-derived structure priors, cite AlphaFold DB and the relevant structure or dataset publications."
type: dataset
title: "AlphaFold Bulk Structure Database Prior Sources"
authors:
- name: "Research Stack Contributors"
date-released: 2026-05-08
url: "https://github.com/allaunthefox/Research-Stack"
repository-code: "https://github.com/allaunthefox/Research-Stack"
license: Apache-2.0
references:
- type: dataset
title: "AlphaFold Protein Structure Database Downloads"
authors:
- name: "EMBL-EBI"
- name: "Google DeepMind"
url: "https://alphafold.ebi.ac.uk/download"
license: CC-BY-4.0
notes: "External source cited as a biological structure corpus and bulk-download prior. Data is not vendored here."
- type: software
title: "AlphaFold Protein Structure Database FTP Area"
authors:
- name: "EMBL-EBI"
- name: "Google DeepMind"
url: "https://ftp.ebi.ac.uk/pub/databases/alphafold"
license: CC-BY-4.0
notes: "Bulk archive source for explicit, receipted ingest only."
- type: article
title: "Highly accurate protein structure prediction with AlphaFold"
authors:
- family-names: "Jumper"
given-names: "John"
- name: "et al."
journal: "Nature"
date-published: 2021
doi: "10.1038/s41586-021-03819-2"
url: "https://www.nature.com/articles/s41586-021-03819-2"
notes: "Required citation for UniProt AlphaFold predictions where applicable."