Research-Stack/obsidian-vault/00-MAP/Glossary.md
Brandon Schneider 54004abe71 Setup Obsidian Knowledge Base for Research Stack
Created comprehensive Obsidian vault for managing Research Stack knowledge:

Core Structure:
- 00-MAP/ - Navigation, Dashboard, Core Concepts, Glossary, Getting Started
- 01-LAYERS/ - All 7 USTSM layers (L0-L6) with formal proofs, docs, receipts, hardware
- 07-RESEARCH/ - Milestones, Attack Plans, Conjectures, Experiments
- 08-TOOLS/ - Templates, Workflows, Scripts
- 09-REFERENCES/ - External resources
- 10-ARCHIVE/ - Completed items

Configuration Files:
- .obsidian/app.json - Vault settings
- .obsidian/community-plugins.json - Plugin configuration
- .obsidian/snippets/research-stack.css - Custom theme with layer colors
- .obsidian/plugins/ - Templater, QuickAdd, Dataview settings
- .obsidian/workspaces.json - Pre-configured workspaces

Templates Created:
- Formal Proof - For Lean theorem documentation
- Attack Plan - For research initiatives
- Milestone - For project milestones
- Receipt - For validation receipts
- Daily Standup - For daily progress tracking

Features:
- Dataview dashboard queries for system health
- Layer-specific color coding (L0-L6)
- Receipt styling and validation status
- Graph view customization
- QuickAdd commands for rapid note creation
- Templater automation with research helpers
- Pre-configured workspaces for different activities

Documentation:
- README.md - Complete vault guide
- Getting Started.md - Step-by-step tutorial
- Core Concepts.md - Fundamental principles
- Glossary.md - Research Stack terminology

Burgers 4-Theorem Attack Plan documented:
- Energy Dissipation theorem
- CFL Stability theorem
- Mass Conservation theorem
- Complexity Regularization theorem

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-05-19 14:40:41 +00:00

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Glossary - Research Stack Terminology

A

Adaptive Virtual Machine (AVM)

Universal bridge between math languages and Python bytecode. Currently undergoing core ISA rebuild.

AngrySphinx

Exponential proof-of-work security mechanism. Found in L4 Security layer.

Anti-BraidStorm

Adversarial dual that tests Yang-Baxter invariance and receipt aliasing as a validation layer for the compressor.

ASIC Topology

Attack-aware system design for hardware extraction. Found in L4 Security layer.

B

BraidStorm

The 8-strand braid topology used by the eigensolid compressor. Strands cross pairwise; each crossing merges phase and produces a residual.

BraidEigensolid

Canonical compressor target: 10 sections covering Q0_2 crossing matrix, Sidon labels, golden centering, eigensolid convergence, receipt invertibility, and Anti-BraidStorm adversarial check.

Burgers Equation

Fundamental PDE combining nonlinear advection with linear diffusion: ∂u/∂t + u·∂u/∂x = ν·∂²u/∂x²

C

CFL Condition

Courant-Friedrichs-Lewy stability condition. For Burgers equation: ν·dt/dx² ≤ ½

Cognitive Load Decomposition

5-factor model for analyzing and distributing cognitive load across the Research Stack.

Compression Delta Phi Gamma Lambda Doctrine

Philosophical framework for compression mechanics in the Research Stack.

Core Surfaces

Key interfaces: Lean/Semantics, Infrastructure shims, Hardware bring-up, Documentation, Stack receipts, Promoted review receipts.

D

Dataview

Obsidian plugin for creating dynamic queries and tables from vault content.

DynamicCanal

Adaptive routing mechanism in L6 Meta layer.

E

Eigensolid

The converged, stable state of a braid crossing loop. Detected when crossStep(s) = s. The DC baseline in the TNT BraidCarrier model.

ENE Schema

Database schema for braid eigensolid compressor. Tables: prover_state, prover_instances, sidon_labels, crossing_weights, braid_strands, eigensolid_snapshots.

Excalidraw

Obsidian plugin for creating hand-drawn style diagrams.

F

FAMM

Frustration-Avoiding Memory Management. Found in L4 Security layer.

Fixed-Point Arithmetic

Q16.16 format (16 bits integer, 16 bits fraction) used for all computation in the Research Stack.

G

Genetic Code Language (GCL)

Self-improving evolutionary program representation system.

Graph View

Obsidian feature showing connections between notes as a network graph.

H

Hardware Extraction

Process of converting formal proofs into hardware implementations (FPGA/ASIC).

Homeostatic Governor

Thermodynamic quality control system in L3 Thermodynamic layer.

I

Izhikevich Model

Mathematical model for spiking neurons used in L2 Biological layer.

K

Knowledge Graph

Network of interconnected concepts, theorems, and research artifacts in the vault.

L

Layer Model

Seven-level architecture: L0 (Primordial) through L6 (Meta).

Lean 4

The single source of truth for all formal claims in the Research Stack.

Local Graph

Obsidian sidebar showing connections for the current note only.

M

Manifold Networking

Semantic routing system in L5 Semantic layer.

Map of Content (MOC)

Index note that links to related notes on a specific topic.

Mass Number

Key concept in the Research Stack's number-theoretic foundation.

Meta-Adaptive System

Self-modifying system in L6 Meta layer.

Milestone

Time-bound research objective with clear success criteria.

MORE FAMM

Memory-Optimized Recursive Entropy Fractal Aggregate Memory Model. Capability-based memory isolation.

N

Navier-Stokes

Fundamental fluid dynamics equations modeled in L3 Thermodynamic layer.

O

Obsidian

Knowledge base application used for the Research Stack documentation.

P

PIST/DIAT Shell

Computational framework in L0 Primordial layer.

Proof of Receipt

Validation mechanism where each transformation generates a machine-readable receipt.

Q

Q16.16

Fixed-point number format: 16 bits integer part, 16 bits fractional part.

Q0.64

High-precision scalar format used as universal interface.

QuickAdd

Obsidian plugin for rapid note creation and content capture.

R

Receipt

Machine-readable attestation record. Receipt dimensions (C, σ, k, ε_seq, t, ∅_scars) form the encoding of compressed state.

Receipt Invertibility

Theorem proving that the full receipt (C, sidon, k, ε_seq, t, ∅_scars) bijectively reconstructs state s.

Research Stack

The overall project: a formalized system with Lean 4 as source of truth and Q16.16 fixed-point computation.

RRC

Research and Review Cycle. The iterative process of formalization and validation.

S

Scar

A FAMM failure record in ene.scars. Stores scar_pressure, failure_mode, and optional coarsening_agent.

Sidon Label

An address from a set where all pairwise sums are unique. Powers of 2 (1,2,4,8,16,32,64,128) are the canonical Sidon set for 8 strands.

Sidon Slack

Address budget max label used. Encodes capacity headroom.

Single Source of Truth

Principle that Lean 4 is the authoritative source for all formal claims.

Spiking Dynamics

Neural activity modeling in L2 Biological layer.

SSMS_nD

n-dimensional state machine in L0 Primordial layer.

T

Tag Wrangler

Obsidian plugin for managing and organizing tags.

Templater

Obsidian plugin for template automation and dynamic content.

Topological S3C Manifold (TSM)

Thermodynamic safety monitor with Builder/Warden/Judge clock domains.

Trixal Quality

Three-factor quality metric: thermal, work, irreversibility.

U

USTSM

Universal Substrate Topological State Machine. The overarching framework architecture.

W

Internal links between notes using [[filename]] syntax.

Workspaces

Obsidian feature for saving and switching between different panel layouts.

Y

Yang-Baxter

The braid relation βij βjk βij = βjk βij βjk that defines braid-order invariance.


Abbreviations

Abbreviation Full Form
AVM Adaptive Virtual Machine
CFL Courant-Friedrichs-Lewy
FAMM Frustration-Avoiding Memory Management
GCL Genetic Code Language
MISC Manifold compression engine
MOC Map of Content
PDE Partial Differential Equation
PIST ???
Q16.16 Fixed-point format (16 int, 16 frac)
Q0.64 High-precision scalar format
RRC Research and Review Cycle
SSMS State Space Model System
STDP Spike-Timing-Dependent Plasticity
TSM Topological S3C Manifold
USTSM Universal Substrate Topological State Machine
WGSL WebGPU Shading Language

External References


This glossary is continuously updated. Last updated: 2024-05-19

#glossary #terminology #reference