Created comprehensive Obsidian vault for managing Research Stack knowledge: Core Structure: - 00-MAP/ - Navigation, Dashboard, Core Concepts, Glossary, Getting Started - 01-LAYERS/ - All 7 USTSM layers (L0-L6) with formal proofs, docs, receipts, hardware - 07-RESEARCH/ - Milestones, Attack Plans, Conjectures, Experiments - 08-TOOLS/ - Templates, Workflows, Scripts - 09-REFERENCES/ - External resources - 10-ARCHIVE/ - Completed items Configuration Files: - .obsidian/app.json - Vault settings - .obsidian/community-plugins.json - Plugin configuration - .obsidian/snippets/research-stack.css - Custom theme with layer colors - .obsidian/plugins/ - Templater, QuickAdd, Dataview settings - .obsidian/workspaces.json - Pre-configured workspaces Templates Created: - Formal Proof - For Lean theorem documentation - Attack Plan - For research initiatives - Milestone - For project milestones - Receipt - For validation receipts - Daily Standup - For daily progress tracking Features: - Dataview dashboard queries for system health - Layer-specific color coding (L0-L6) - Receipt styling and validation status - Graph view customization - QuickAdd commands for rapid note creation - Templater automation with research helpers - Pre-configured workspaces for different activities Documentation: - README.md - Complete vault guide - Getting Started.md - Step-by-step tutorial - Core Concepts.md - Fundamental principles - Glossary.md - Research Stack terminology Burgers 4-Theorem Attack Plan documented: - Energy Dissipation theorem - CFL Stability theorem - Mass Conservation theorem - Complexity Regularization theorem Generated with [Devin](https://cli.devin.ai/docs) Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
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Glossary - Research Stack Terminology
A
Adaptive Virtual Machine (AVM)
Universal bridge between math languages and Python bytecode. Currently undergoing core ISA rebuild.
AngrySphinx
Exponential proof-of-work security mechanism. Found in L4 Security layer.
Anti-BraidStorm
Adversarial dual that tests Yang-Baxter invariance and receipt aliasing as a validation layer for the compressor.
ASIC Topology
Attack-aware system design for hardware extraction. Found in L4 Security layer.
B
BraidStorm
The 8-strand braid topology used by the eigensolid compressor. Strands cross pairwise; each crossing merges phase and produces a residual.
BraidEigensolid
Canonical compressor target: 10 sections covering Q0_2 crossing matrix, Sidon labels, golden centering, eigensolid convergence, receipt invertibility, and Anti-BraidStorm adversarial check.
Burgers Equation
Fundamental PDE combining nonlinear advection with linear diffusion: ∂u/∂t + u·∂u/∂x = ν·∂²u/∂x²
C
CFL Condition
Courant-Friedrichs-Lewy stability condition. For Burgers equation: ν·dt/dx² ≤ ½
Cognitive Load Decomposition
5-factor model for analyzing and distributing cognitive load across the Research Stack.
Compression Delta Phi Gamma Lambda Doctrine
Philosophical framework for compression mechanics in the Research Stack.
Core Surfaces
Key interfaces: Lean/Semantics, Infrastructure shims, Hardware bring-up, Documentation, Stack receipts, Promoted review receipts.
D
Dataview
Obsidian plugin for creating dynamic queries and tables from vault content.
DynamicCanal
Adaptive routing mechanism in L6 Meta layer.
E
Eigensolid
The converged, stable state of a braid crossing loop. Detected when crossStep(s) = s. The DC baseline in the TNT BraidCarrier model.
ENE Schema
Database schema for braid eigensolid compressor. Tables: prover_state, prover_instances, sidon_labels, crossing_weights, braid_strands, eigensolid_snapshots.
Excalidraw
Obsidian plugin for creating hand-drawn style diagrams.
F
FAMM
Frustration-Avoiding Memory Management. Found in L4 Security layer.
Fixed-Point Arithmetic
Q16.16 format (16 bits integer, 16 bits fraction) used for all computation in the Research Stack.
G
Genetic Code Language (GCL)
Self-improving evolutionary program representation system.
Graph View
Obsidian feature showing connections between notes as a network graph.
H
Hardware Extraction
Process of converting formal proofs into hardware implementations (FPGA/ASIC).
Homeostatic Governor
Thermodynamic quality control system in L3 Thermodynamic layer.
I
Izhikevich Model
Mathematical model for spiking neurons used in L2 Biological layer.
K
Knowledge Graph
Network of interconnected concepts, theorems, and research artifacts in the vault.
L
Layer Model
Seven-level architecture: L0 (Primordial) through L6 (Meta).
Lean 4
The single source of truth for all formal claims in the Research Stack.
Local Graph
Obsidian sidebar showing connections for the current note only.
M
Manifold Networking
Semantic routing system in L5 Semantic layer.
Map of Content (MOC)
Index note that links to related notes on a specific topic.
Mass Number
Key concept in the Research Stack's number-theoretic foundation.
Meta-Adaptive System
Self-modifying system in L6 Meta layer.
Milestone
Time-bound research objective with clear success criteria.
MORE FAMM
Memory-Optimized Recursive Entropy Fractal Aggregate Memory Model. Capability-based memory isolation.
N
Navier-Stokes
Fundamental fluid dynamics equations modeled in L3 Thermodynamic layer.
O
Obsidian
Knowledge base application used for the Research Stack documentation.
P
PIST/DIAT Shell
Computational framework in L0 Primordial layer.
Proof of Receipt
Validation mechanism where each transformation generates a machine-readable receipt.
Q
Q16.16
Fixed-point number format: 16 bits integer part, 16 bits fractional part.
Q0.64
High-precision scalar format used as universal interface.
QuickAdd
Obsidian plugin for rapid note creation and content capture.
R
Receipt
Machine-readable attestation record. Receipt dimensions (C, σ, k, ε_seq, t, ∅_scars) form the encoding of compressed state.
Receipt Invertibility
Theorem proving that the full receipt (C, sidon, k, ε_seq, t, ∅_scars) bijectively reconstructs state s.
Research Stack
The overall project: a formalized system with Lean 4 as source of truth and Q16.16 fixed-point computation.
RRC
Research and Review Cycle. The iterative process of formalization and validation.
S
Scar
A FAMM failure record in ene.scars. Stores scar_pressure, failure_mode, and optional coarsening_agent.
Sidon Label
An address from a set where all pairwise sums are unique. Powers of 2 (1,2,4,8,16,32,64,128) are the canonical Sidon set for 8 strands.
Sidon Slack
Address budget − max label used. Encodes capacity headroom.
Single Source of Truth
Principle that Lean 4 is the authoritative source for all formal claims.
Spiking Dynamics
Neural activity modeling in L2 Biological layer.
SSMS_nD
n-dimensional state machine in L0 Primordial layer.
T
Tag Wrangler
Obsidian plugin for managing and organizing tags.
Templater
Obsidian plugin for template automation and dynamic content.
Topological S3C Manifold (TSM)
Thermodynamic safety monitor with Builder/Warden/Judge clock domains.
Trixal Quality
Three-factor quality metric: thermal, work, irreversibility.
U
USTSM
Universal Substrate Topological State Machine. The overarching framework architecture.
W
Wiki-Links
Internal links between notes using [[filename]] syntax.
Workspaces
Obsidian feature for saving and switching between different panel layouts.
Y
Yang-Baxter
The braid relation βij βjk βij = βjk βij βjk that defines braid-order invariance.
Abbreviations
| Abbreviation | Full Form |
|---|---|
| AVM | Adaptive Virtual Machine |
| CFL | Courant-Friedrichs-Lewy |
| FAMM | Frustration-Avoiding Memory Management |
| GCL | Genetic Code Language |
| MISC | Manifold compression engine |
| MOC | Map of Content |
| PDE | Partial Differential Equation |
| PIST | ??? |
| Q16.16 | Fixed-point format (16 int, 16 frac) |
| Q0.64 | High-precision scalar format |
| RRC | Research and Review Cycle |
| SSMS | State Space Model System |
| STDP | Spike-Timing-Dependent Plasticity |
| TSM | Topological S3C Manifold |
| USTSM | Universal Substrate Topological State Machine |
| WGSL | WebGPU Shading Language |
External References
This glossary is continuously updated. Last updated: 2024-05-19
#glossary #terminology #reference