Research-Stack/obsidian-vault/00-MAP/README.md
Brandon Schneider 54004abe71 Setup Obsidian Knowledge Base for Research Stack
Created comprehensive Obsidian vault for managing Research Stack knowledge:

Core Structure:
- 00-MAP/ - Navigation, Dashboard, Core Concepts, Glossary, Getting Started
- 01-LAYERS/ - All 7 USTSM layers (L0-L6) with formal proofs, docs, receipts, hardware
- 07-RESEARCH/ - Milestones, Attack Plans, Conjectures, Experiments
- 08-TOOLS/ - Templates, Workflows, Scripts
- 09-REFERENCES/ - External resources
- 10-ARCHIVE/ - Completed items

Configuration Files:
- .obsidian/app.json - Vault settings
- .obsidian/community-plugins.json - Plugin configuration
- .obsidian/snippets/research-stack.css - Custom theme with layer colors
- .obsidian/plugins/ - Templater, QuickAdd, Dataview settings
- .obsidian/workspaces.json - Pre-configured workspaces

Templates Created:
- Formal Proof - For Lean theorem documentation
- Attack Plan - For research initiatives
- Milestone - For project milestones
- Receipt - For validation receipts
- Daily Standup - For daily progress tracking

Features:
- Dataview dashboard queries for system health
- Layer-specific color coding (L0-L6)
- Receipt styling and validation status
- Graph view customization
- QuickAdd commands for rapid note creation
- Templater automation with research helpers
- Pre-configured workspaces for different activities

Documentation:
- README.md - Complete vault guide
- Getting Started.md - Step-by-step tutorial
- Core Concepts.md - Fundamental principles
- Glossary.md - Research Stack terminology

Burgers 4-Theorem Attack Plan documented:
- Energy Dissipation theorem
- CFL Stability theorem
- Mass Conservation theorem
- Complexity Regularization theorem

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-05-19 14:40:41 +00:00

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Markdown

# Research Stack Knowledge Graph
## Overview
This is the central knowledge management system for the Sovereign Research Stack, a formalized system where Lean 4 is the single source of truth and all computation is Q16.16 fixed-point arithmetic.
## Quick Navigation
### 🗺️ **Map & Orientation**
- [[00-MAP/Core Concepts]] - Fundamental concepts and terminology
- [[00-MAP/System Architecture]] - High-level system architecture
- [[00-MAP/Getting Started]] - How to use this knowledge base
### 📚 **Layered Knowledge**
- [[01-LAYERS/00-Overview]] - The 7-layer USTSM model
- [[01-LAYERS/L0-Primordial]] - Pure math, fixed-point arithmetic
- [[01-LAYERS/L1-Geometric]] - Shape-aware topology
- [[01-LAYERS/L2-Biological]] - Genetic codes, spiking neurons
- [[01-LAYERS/L3-Thermodynamic]] - Energy-aware quality
- [[01-LAYERS/L4-Security]] - Attack-aware gating
- [[01-LAYERS/L5-Semantic]] - Meaning-aware filtering
- [[01-LAYERS/L6-Meta]] - Self-aware adaptation
### 🎯 **Active Research**
- [[07-RESEARCH/00-Milestones]] - Current milestones and progress
- [[07-RESEARCH/01-Attack-Plans]] - Active attack plans
- [[07-RESEARCH/02-Conjectures]] - Research conjectures
- [[07-RESEARCH/03-Experiments]] - Experimental validation
### 🔧 **Tools & Templates**
- [[08-TOOLS/01-Templates]] - Document templates
- [[08-TOOLS/02-Workflows]] - Research workflows
- [[08-TOOLS/00-Scripts]] - Automation scripts
## Current Status
### 🟢 **Active Milestone**
**Burgers 4-Theorem Attack Plan** - Implementing core theorems for Burgers equation
- [[Burgers 4-Theorem Attack Plan]] - Main attack plan document
- [[Burgers Equation Energy Dissipation Theorem]] - Theorem 1
- [[Burgers Equation CFL Stability Theorem]] - Theorem 2
- [[Burgers Equation Mass Conservation Theorem]] - Theorem 3
- [[Burgers Equation Complexity Regularization Theorem]] - Theorem 4
### 📊 **System Health**
- **Lean Build Status:** ✅ 746 modules, 3529 build jobs, 0 errors
- **Formal Proofs:** 🟡 173 TODO(lean-port) items remaining
- **Receipt Generation:** 🟢 Core receipts operational
- **Hardware Extraction:** 🟡 FPGA verification in progress
## Knowledge Graph Structure
### 🏗️ **Core Relationships**
```
Layer L0 (Primordial) ──┐
├─→ Formal Proofs ──→ Receipts ──→ Hardware
Layer L1 (Geometric) ───┤
├─→ Attack Plans ──→ Milestones ──→ Validation
Layer L2 (Biological) ──┤
└─→ Conjectures ──→ Experiments ──→ Results
...
```
### 🏷️ **Tag System**
- `#layer-L0` through `#layer-L6` - Layer classification
- `#formal-proof` - Lean formal proofs
- `#receipt` - Receipt documents
- `#attack-plan` - Research attack plans
- `#milestone` - Project milestones
- `#conjecture` - Research conjectures
- `#experiment` - Experimental validation
- `#hardware` - Hardware extraction
### 🔍 **Search Strategies**
- **By Layer:** Use `tag:#layer-LX` to find layer-specific content
- **By Type:** Use `tag:#formal-proof` for proofs, `tag:#receipt` for receipts
- **By Status:** Use `tag:#status-completed` for finished work
- **By Priority:** Use `tag:#priority-critical` for urgent items
## Recent Activity
### 📝 **Latest Updates**
- `2024-05-19` - Completed Burgers 4-Theorem Attack Plan implementation
- `2024-05-19` - Added Energy Dissipation theorem with receipt generation
- `2024-05-19` - Updated Obsidian vault structure
### 🔄 **Currently In Progress**
- Lean formal proof completion (173 TODO items)
- Hardware extraction path verification
- Receipt system integration testing
## Community & Collaboration
### 👥 **Contributors**
- [[Research Lead]] - Overall research direction
- [[Formal Methods Team]] - Lean proof development
- [[Hardware Team]] - FPGA implementation
- [[Validation Team]] - Receipt generation and testing
### 📋 **Review Process**
1. **Self-Review** - Author review
2. **Peer Review** - Team member review
3. **Expert Review** - Domain expert review
4. **Formal Verification** - Lean compilation and proof checking
## External Links
### 📚 **Reference Materials**
- [Lean 4 Documentation](https://lean-lang.org/)
- [Q16.16 Fixed-Point Arithmetic](https://en.wikipedia.org/wiki/Q_(number_format))
- [Formal Methods Wiki](https://en.wikipedia.org/wiki/Formal_methods)
### 🔗 **Related Projects**
- [[Mathlib4]] - Lean mathematical library
- [[FAMM]] - Frustration-avoiding memory management
- [[USTSM]] - Universal Substrate Topological State Machine
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*This knowledge base is continuously evolving. Last updated: <% tp.date.now('YYYY-MM-DD') %>*
#research-stack #knowledge-graph #overview