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Research-Stack/0-Core-Formalism/lean/Semantics
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Brandon Schneider b58c1201ac Remove legacy Python prototypes superseded by Lean formalization 
Deleted 58 Python files (~31K lines) that were experimental prototypes
and bootstrapping scripts now superseded by the Lean source of truth:

0-Core-Formalism/core/ (2 files):
  - field_solver_emulator.py
  - formalize_mass_number.py

0-Core-Formalism/lean/LeanGPT/ (17 files):
  - All LLM bootstrapping scripts (algorithm_bootstrap, automated_conviction_loop,
    classify_algorithms, external_model_bridge, genetic_hypothesis_generator,
    group_algorithms_by_domain, hutter_prize_full_test, hutter_prize_test,
    hypothesis_generator, mathematical_law_conviction, otom_pipeline,
    performance_profiler, refine_algorithms_by_domain, skeptical_agent_concern_fix,
    skeptical_agent_swarm, wgsl_hypothesis_runner)

0-Core-Formalism/lean/Semantics/ (1 file):
  - expand_domains.py

0-Core-Formalism/otom/ (4 files):
  - scripts/validate_routing.py
  - tools/ene/ene_artifact_salvage_extractor.py
  - tools/genetics/emit_selection_receipt.py
  - tools/genetics/selection_metrics.py

2-Search-Space/ (14 files):
  - FAMM/solve_famm_sorry.py
  - GhostPivot/gist_pivot_poc.py
  - PIST/hybrid_tsm_pist_torus.py, pist_sweep.py
  - SVQF/microgrid_voxel_emulation.py
  - manifold/ (9 files: api/server, collapse_editor, particle_interaction,
    projection_engine, relativity_adapter, self_typing_engine, soliton_search,
    substrate_bridge)
  - search/generate_lut.py, ingest_pd.py, sweep_manifold.py

3-Mathematical-Models/ (20 files):
  - dna_benchmark/compressors/ (5 files)
  - pist_biological_polymorphic_shifter_v3*.py (5 files)
  - fiber_optic_vibrational_tensor/fiber_optic_tensor_network.py
  - manifold_compression/src/ (2 files)
  - fix_kwargs_meta.py, fix_metadata.py, fix_remaining.py, fix_sbox.py
  - genetics/Allelica/Allelica.py

These prototypes expressed formal concepts in Python that are now
formalized in Lean (747+ Lean modules). Per AGENTS.md, Lean is the
source of truth for formal claims.

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-05-19 15:34:17 +00:00
..
.github/workflows initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
Ancillary Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
blackboard initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
build-static initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
Core Address fixed-point review findings 2026-05-05 21:26:18 -05:00
ExtensionScaffold Rust ene-session-sync: complete rewrite with Python adaptation layer 2026-05-19 13:53:19 +00:00
legacy initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
OpenWormKernelFieldBenchmark initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
Quarantine initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
scripts initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
Semantics Remove legacy Python prototypes superseded by Lean formalization 2026-05-19 15:34:17 +00:00
.gitignore initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
AdaptivePrecision.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
AdaptivePrecision.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
AdaptivePrecision.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
AGENTS.md Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
BindServer.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
BindServer.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
BindServer.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
Biology.lean Semantics: modularize quaternion, resolve circular dependencies, and eliminate float operations 2026-05-19 14:29:41 +00:00
CombinatorialPrecision.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
CombinatorialPrecision.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
CombinatorialPrecision.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
debug_eval.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
EQUATIONS_EXTRACTION.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
EvolutionaryTransfold.lean Track compiling Lean source slice 2026-05-11 22:14:31 -05:00
EvolutionaryTransfoldExpanded.lean Track compiling Lean source slice 2026-05-11 22:14:31 -05:00
ExtensionScaffold.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
EXTERNAL_REVIEW_REQUIREMENTS.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ExtremeParameterTestEval.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ExtremeParameterTestEval.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
ExtremeParameterTestEval.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
ExtremeParameterTestEval_output.txt initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
F01_Q16_16_FixedPoint.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
F01_Q16_16_FixedPoint.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
FPGAExtraction.lean Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
FPGAExtraction.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
FPGAExtraction.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
GenerateLUTMain.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
GenerateSparklePhiS3C.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
GenerateSparklePhiS3C.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
GenerateSparklePhiS3C.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
lake-manifest.json Consolidate research stack updates 2026-05-05 21:09:48 -05:00
lakefile.toml Consolidate research stack updates 2026-05-05 21:09:48 -05:00
lean-toolchain Consolidate research stack updates 2026-05-05 21:09:48 -05:00
Main.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
Main.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
Main.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MANIFOLD_NETWORKING_V0.1_ACCEPTANCE.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ManifoldCompressionAgnostic.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ManifoldCompressionAgnostic.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
ManifoldCompressionAgnostic.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MATH_MODEL_MAP.tsv initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MetadataOverheadBudget.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MetadataOverheadBudget.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MetadataOverheadBudget.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MetaManifoldLanguageMerging.lean Consolidate research stack updates 2026-05-05 21:09:48 -05:00
MetaManifoldLanguageMerging.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MetaManifoldLanguageMerging.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MinimumNeuralCompression.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MinimumNeuralCompression.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MinimumNeuralCompression.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MOIMBenchmarkMain.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MOIMBenchmarkMain.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MOIMBenchmarkMain.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
NominalParameterTestEval.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
NominalParameterTestEval.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
NominalParameterTestEval.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
OpenWormBenchmark.lean Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
OpenWormBenchmark.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
OpenWormBenchmark.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
OriginProtocol.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
OriginProtocol.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
OriginProtocol.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
PHASE_COMPLETION_SUMMARY.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
PUBLIC_BENCHMARK_RELEASE.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
PUBLIC_THEORY_RELEASE.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
PurifyMain.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
QuizTest.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
QuizTest.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
QuizTest.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
README.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
SearchServer.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
SearchServer.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
SearchServer.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
Semantics.lean Quarantine sorry blocks, fix RcloneIntegration proof, add ENE wiki re-ingest and ZFS setup. 2026-05-18 23:01:44 -05:00
Semantics.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
Semantics.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
SIGNAL_ANALYSIS_GENETIC_IMPLICATIONS.md Track compiling Lean source slice 2026-05-11 22:14:31 -05:00
TangNano9KEmitter.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
TangNano9KEmitter.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
TangNano9KEmitter.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
test.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
TestFintype.lean Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
TRANSFOLD_COMPARISON.md Track compiling Lean source slice 2026-05-11 22:14:31 -05:00
TransfoldEquation.lean Track compiling Lean source slice 2026-05-11 22:14:31 -05:00
TransfoldEquationBaseline.lean Track compiling Lean source slice 2026-05-11 22:14:31 -05:00
UrbanAdaptationTransfold.lean Track compiling Lean source slice 2026-05-11 22:14:31 -05:00

README.md

Semantics