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devin-ai-integration[bot] 85506530f2 fix(security): remove hardcoded secrets, patch command injection, tighten CORS and Cypher guard (#76) 
* fix(security): remove hardcoded secrets, patch command injection, tighten CORS and Cypher guard

- run_import_workflow.py, run_multi_import.py: replace hardcoded budget
  password with BUDGET_PASSWORD env-var (fail-fast if unset)
- server.js /ingest: replace shell-interpolated exec() with execFile()
  so user-controlled title/body cannot inject shell commands
- authentik-values.yaml: blank out bootstrap_password and bootstrap_token
  so they must be supplied at deploy time via --set or sealed-secret
- cluster-dashboard main.py: restrict CORS from allow_origins=["*"] to
  env-configurable whitelist (default: dashboard.researchstack.info),
  methods to GET, headers to Authorization+Content-Type
- neo4j_obsidian_connector_router.js (both copies): replace permissive
  prefix-only readOnly regex with a deny-list that blocks
  CREATE/MERGE/DELETE/DETACH/SET/REMOVE/DROP anywhere in the query, and
  route readOnly queries through session.readTransaction()

Co-Authored-By: Allaun Silverfox <bigdataiscoming+9i37y6j2@protonmail.com>

* fix(security): add CALL procedure allowlist for Cypher readOnly, add OPTIONS to CORS

- Cypher guard: restore positive allowlist for CALL targets (only db.* and
  apoc.meta.* allowed in readOnly mode). Extract cypherReadOnlyViolation()
  helper for clarity. Both copies updated.
- CORS: add OPTIONS to allow_methods so preflight requests succeed.

Co-Authored-By: Allaun Silverfox <bigdataiscoming+9i37y6j2@protonmail.com>

* fix(security): use negative lookahead for CALL allowlist, remove dead CALL\s*\{ branch

- Replace two-regex CALL check with single negative-lookahead
  CYPHER_CALL_DISALLOWED_RE = /\bCALL\s+(?!db\.|apoc\.meta\.)/i
  This correctly blocks queries containing ANY disallowed CALL target,
  even when bundled alongside an allowed CALL db.* or CALL apoc.meta.*.
- Remove dead CALL\s*\{ alternative from CYPHER_WRITE_RE — the trailing
  \b never matched because { is a non-word character.
- Both copies updated identically.

Co-Authored-By: Allaun Silverfox <bigdataiscoming+9i37y6j2@protonmail.com>

---------

Co-authored-by: Devin AI <158243242+devin-ai-integration[bot]@users.noreply.github.com>
Co-authored-by: Allaun Silverfox <bigdataiscoming+9i37y6j2@protonmail.com>
2026-06-14 20:42:14 -05:00
..
gsp fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
kotc Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
public/css Consolidate research stack updates 2026-05-05 21:09:48 -05:00
reflow initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
scripts initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
snn fix(arch): enforce Lean-first hierarchy across project — remove all secondary-Lean language 2026-05-26 22:40:03 -05:00
unsloth_compiled_cache fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
.prover_config.json.example Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
arxiv_miner.py Consolidate research stack updates 2026-05-05 21:09:48 -05:00
ascii_dof_pack_q16.wgsl Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
ascii_dof_pipeline.md Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
ascii_dof_quad_buffer.ts Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
bf4prover.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
bf4prover_root.py chore: preserve working tree before secure wipe 2026-05-13 17:36:02 -05:00
bidirectional_lean_shim.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
bitcoin_rgflow_standalone.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
braid_fft.wgsl fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 2026-05-31 23:38:03 -05:00
braidcore_toolkit.py WIP: accumulated changes 2026-05-25 16:24:21 -05:00
build_physics_db.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
build_unified_forest.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
bulk_10x.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
burgers_scar_filter.wgsl fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 2026-05-31 23:38:03 -05:00
canonical_math_functions.py feat: add RDS probe tool, credential server, and Notion/Linear ingestion pipeline 2026-05-18 00:31:44 -05:00
canonicalize_formula.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
canonicalize_unknowns.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
chacha20_braid.py feat: 12 math enhancements — Q16 LUT, braid VCN encoder, FPGA Verilog, FFT, crypto 2026-05-28 14:49:26 -05:00
classify_math_entities.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
cleanup_bad_math.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
commoncrawl_waveprobe_ingestion.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
compress_tagged_parquet.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
consolidate_coding_languages.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
consolidate_language_databases.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
convert_datasets_to_parquet.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
convert_equations_to_phinary.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
creation_os_shim.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
crystalline_gradient_descent.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
decrypt_dumps.cjs collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
delta_gcl_sync_layer.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
deploy_ene_full_mesh.py cleanup(ene): load node list from nodes.yaml instead of hardcoded hostnames 2026-05-26 17:16:02 -05:00
deploy_sigma_session.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
derive_avm_spec.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
diff_ingest_pipeline.js initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
distributed_swarm_colonization.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
dump_linear_full.js initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
dump_notion_ene_jsonl.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
dump_notion_full.js initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
end_to_end_pipeline_test.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ene.js collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
ene_search.js collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
enhanced_integrated_swarm.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
equation_eigenvectors.json Consolidate research stack updates 2026-05-05 21:09:48 -05:00
extremophile_bounds.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
extremophile_priors.py Consolidate research stack updates 2026-05-05 21:09:48 -05:00
fetch_arxiv.py fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 2026-05-31 23:38:03 -05:00
fetch_s2.py fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 2026-05-31 23:38:03 -05:00
final_push.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
finalize_database.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
generate_avm_gold_trace.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
generate_cad_models.py Consolidate research stack updates 2026-05-05 21:09:48 -05:00
generate_equation_forest.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
generate_lean_module_domain_graph.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
generate_project_graph.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
gpu_bhocs_depth_verify.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
gpu_bhocs_integrity_verify.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
gpu_metaprobe_compression_engine.py Consolidate research stack updates 2026-05-05 21:09:48 -05:00
gpu_pist_compress.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
gpu_q16_verification.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
grw_codec_prototype.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
hot_path_cold_path.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
hot_swap_daemon.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
hot_swap_manager.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
hutter_compression_shim.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
hutter_eigenvector_compression.py Consolidate research stack updates 2026-05-05 21:09:48 -05:00
hutter_full_purification.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
hutter_howto_engine.py Consolidate research stack updates 2026-05-05 21:09:48 -05:00
hutter_manifold_compressor.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
hutter_nat_gpu_search.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
hutter_pist_decoder.c Consolidate research stack updates 2026-05-05 21:09:48 -05:00
hutter_rgflow_filter.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
import_lean_math_to_forest.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ingest_chatgpt_json.js initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ingest_chatgpt_session.mjs collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
ingest_linear.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ingest_linear_md.js initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ingest_master_synthesis.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
ingest_notion_md.js initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ingest_notion_substrate.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ingest_research.js collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
ingest_unified_compression_synthesis.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
ingest_venice_research_stack_conversation.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
ingest_watcher.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ingest_watcher_root.py chore: preserve working tree before secure wipe 2026-05-13 17:36:02 -05:00
iterative_theorem_hardening.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
joule_energy.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
lean_addons_to_parquet.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
lean_bridge.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
lean_gpu_math_streamer.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
lean_to_parquet.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
linear.js initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
manifold_basis_optimizer_v3.py Consolidate research stack updates 2026-05-05 21:09:48 -05:00
manifold_cache.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
manifold_render.wgsl initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
manifold_viz.ipynb initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
map_all_equations.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
map_equation_connections.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
map_equation_forest.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
math_model_to_forest_core.pyx initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
mathgpt_gatekeeper.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
mathlib_ingestion_pipeline.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
mathlib_to_parquet.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
mcp_cloud_runtime.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
mcp_ene_atlas.py Point ENE scripts at shared data 2026-05-11 22:10:55 -05:00
mcp_research_engine.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
mcp_servo_fetch.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
mcp_truth_dag.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
md_to_jsonl_converter.py cleanup(ene): make provenance node/tailscale configurable via env vars and CLI arg 2026-05-26 16:40:35 -05:00
moire_decoder.c Consolidate research stack updates 2026-05-05 21:09:48 -05:00
nanokernel_cartridge_uart_stack.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
nes_controller_port_reader.asm initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
nes_oisc_lut_6502.asm initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
notion.js initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
nuvmap_metadata_blitter.md Add NUVMAP scan scheduling receipts 2026-05-11 14:49:17 -05:00
nuvmap_metadata_blitter.wgsl Add NUVMAP scan scheduling receipts 2026-05-11 14:49:17 -05:00
obsidian_sync_shim.py cleanup(ene): make obsidian shim provenance configurable and schema-complete 2026-05-26 16:54:12 -05:00
openworm_benchmark_shim.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
package.json collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
pbacs_rev3_hdl.v initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
pist_alpha_extended.py Consolidate research stack updates 2026-05-05 21:09:48 -05:00
pist_biological_polymorphic_shifter_v3.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
pist_biological_polymorphic_shifter_v3_part2.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
pist_biological_polymorphic_shifter_v3_part3.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
pist_biological_polymorphic_shifter_v3_part4.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
pist_orchestrator.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
polynomial_commitment.py feat: 12 math enhancements — Q16 LUT, braid VCN encoder, FPGA Verilog, FFT, crypto 2026-05-28 14:49:26 -05:00
preprocess_algos_for_deepseek_v4.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
probe_science_toolbelt.py chore: preserve working tree before secure wipe 2026-05-13 17:36:02 -05:00
prover_backend_interface.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
q16_arithmetic_verify.wgsl initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
q16_bitlevel_verify.wgsl initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
q16_comparison_verify.wgsl initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
q16_lut_generator.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
q16_lut_generator.wgsl initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
q16_minmax_verify.wgsl initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
q16_path_explorer.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
q16_path_explorer.wgsl initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
q_factor.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
query_linear_msm.js initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
query_notion_msm.js initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
README_redpajama_pipeline.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
reed_solomon_vcn.py fix: reed_solomon_vcn decode_rs return type (tuple → bytes extraction) 2026-05-28 17:35:55 -05:00
remap_physics_db_v2.py Consolidate research stack updates 2026-05-05 21:09:48 -05:00
reorganize_to_goals.py feat(ene): replace legacy Python mesh with Rust crates 2026-05-20 18:46:18 -05:00
review_agent.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
review_pipeline.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
rgflow_blind_detector.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
rgflow_codebase_filter.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
rgflow_compute.wgsl initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
rgflow_enwik9_sweep.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
rgflow_gpu_pipeline.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
rgflow_lean_filter.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
run_q16_shaders.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
sabotage_prevention.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
safety_tolerance_framework.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
sciencehub_mcp.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
SCIENCEHUB_README.md Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
scihubscraper.md Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
selective_text_container_to_jsonl.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
self_clean_shim.py Refactor provenance sources for open witness backends 2026-05-12 05:57:04 -05:00
semantic_index_linear.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
server.js fix(security): remove hardcoded secrets, patch command injection, tighten CORS and Cypher guard (#76) 2026-06-14 20:42:14 -05:00
sqlite.js collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
swarm_benchmark.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
swarm_competition.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
swarm_design_nextgen_agents.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
swarm_gene_bytecode_jit.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
swarm_math_debate.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
swarm_network_capacity.py cleanup(ene): use nodes.yaml inventory instead of hardcoded host resource map 2026-05-26 17:15:50 -05:00
swarm_nonstandard_web_interfaces.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
swarm_resource_manager.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
swarm_review_genetic_groundup.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
swarm_surface.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
swarm_system_inspector.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
swarm_tag_parquet.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
swarm_topology_integration.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
swarm_topology_optimizer.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
swarm_transport_layer.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
temporal_spatial_ram.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
test_extremophile_constraints.py Consolidate research stack updates 2026-05-05 21:09:48 -05:00
test_moire_real.c Consolidate research stack updates 2026-05-05 21:09:48 -05:00
test_pist_decoder.py Consolidate research stack updates 2026-05-05 21:09:48 -05:00
text_container_to_jsonl.py cleanup(ene): make provenance node/tailscale configurable via env vars and CLI arg 2026-05-26 16:42:03 -05:00
topological_state_machine.py Consolidate research stack updates 2026-05-05 21:09:48 -05:00
topology.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
tsm_resource_report.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
unified_cartridge_controller_stack.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
unified_hardware_surface.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
unified_math_first_tagger.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
unified_metaprobe_collapse.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
unified_swarm_query.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
unknown_refinery.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
validate_avm_compliance.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
virtual_gpu_real_benchmark.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
virtual_gpu_real_benchmark_fast.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
virtual_gpu_testbench.py fix(scripts): replace bare except clauses with specific exception types (#77) 2026-06-14 19:30:28 -05:00
virtual_gpu_topology_loader.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
virtual_gpu_workload_testbench.py initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
wiki_builder_shim.py ingest: Hypercube → Hyper-Rhomboid composition theory 2026-05-07 02:04:03 -05:00
workspace.js collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
zotero_corpus_pipeline.py Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00