mirror of
https://github.com/allaunthefox/Research-Stack.git
synced 2026-07-30 18:56:16 +00:00
9d450756c1
- Add ene-node, ene-rds-chat, ene-rds-ephemeral, ene-rds-wiki, ene-storage, ene-sync crates to the ene-rds workspace - Extend ene-rds-core with shared types and cluster messaging - Add review doc and wiki page for the RDS Rust workspace - Fix devcontainer: custom /etc/passwd with researcher user, add gcc/glibc/binutils for VS Code server compatibility, include util-linux, gnutar, gzip; add LD_LIBRARY_PATH - Ignore Nix build output (`result`) and Rust artifacts Generated with [Devin](https://cli.devin.ai/docs) Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
86 lines
4.8 KiB
Markdown
86 lines
4.8 KiB
Markdown
# Research Stack Wiki
|
||
|
||
## Entry Points
|
||
|
||
| Document | Purpose |
|
||
|---|---|
|
||
| `docs/AGENTS.md` | Strict LLM operating rules — the one file every agent must read first |
|
||
| `docs/VOCABULARY_LOCK.md` | Fixed terminology — Lean references, PIST/FAMM/GWL signatures |
|
||
| `docs/GLOSSARY.md` | Project-wide glossary — all terms across all domains |
|
||
| `wiki/Concept-Archive.md` | Concept archive — canonical, speculative, held, lossy, retired, and abandoned terms |
|
||
| `docs/BEGINNERS_MAP.md` | Narrative onboarding — what this stack is and why it exists |
|
||
| `wiki/Build-System.md` | Build system — pinned Python (`3.11.15`), uv integration, VSCode tasks, npm scripts |
|
||
| `wiki/Text-to-CAD-Environment.md` | Text-to-CAD environment — CAD-specific venv sequencing, `build123d` / `OCP` verification, agent contract |
|
||
| `wiki/DeepSeek-Review-Process.md` | AI-assisted mathematical review — receipt schema, two-stage pipeline, prime-gap example |
|
||
| `docs/VISION_NORTH_STAR.md` | Long-term vision — where the stack converges |
|
||
| `docs/PHI_CENTER_REVAMP.md` | Phi-centered cockpit architecture — cost/efficiency comparison root |
|
||
| `docs/BRAIN_AS_MANIFOLD.md` | Biological manifold theory — hyperbolic geometry, intelligence ladder, Physarum |
|
||
| `docs/EQUATION_FOREST_INDEX.md` | Equation taxonomy — kernel IDs F01–F12 and equation families |
|
||
| `docs/MATH_MODEL_MAP.tsv` | Equation registry — source of truth for all mathematical models |
|
||
|
||
## Specifications
|
||
|
||
| Spec | Domain |
|
||
|---|---|
|
||
| `docs/specs/AVM_CANONICAL_SPEC.md` | Adaptive Virtual Machine — universal math language adapter |
|
||
| `docs/specs/PHI_S3C_PIST_BRIDGE_SPEC.md` | Phi–S3C–PIST bridge — witness transport for Phi-centered transforms |
|
||
| `docs/specs/GCL_FIELD_EQUATIONS_SPEC.md` | GCL field equations — manifold-weighted field snapshot |
|
||
| `docs/specs/MS3C_NESTED_REDUCTION_GEAR_SPEC.md` | Nested reduction gear — S³ shell gear reduction for AngrySphinx |
|
||
|
||
## Research Domains
|
||
|
||
| Domain | Location |
|
||
|---|---|
|
||
| GCL / GCCL (compression language) | `docs/gcl/`, `docs/research/GCCL_THEORY_INTRO.md` |
|
||
| MISC / GENSIS (encoding substrates) | `docs/research/MISC_THEORY.md`, `docs/research/MISC_GENETIC_NSPACE.md` |
|
||
| Security / AngrySphinx | `docs/research/BURGERS_READINESS_ASSESSMENT.md` |
|
||
| FPGA / Hardware | `docs/FPGA_IMPLEMENTATION_REVIEW.md`, `docs/FPGA_WARDEN_NODE_SPEC.md` |
|
||
| Semantics / Lean | `docs/semantics/`, `0-Core-Formalism/lean/Semantics/` |
|
||
| Safety | `docs/safety/`, `docs/SAFETY_GATED_VERIFICATION_PLAN.md` |
|
||
| Neuroscience | `docs/neuroscience/` |
|
||
| Physics | `docs/physics/` |
|
||
| Provenance / Audit | `docs/provenance/` |
|
||
|
||
## Roadmaps
|
||
|
||
| Roadmap | Target |
|
||
|---|---|
|
||
| `docs/roadmaps/UNIVERSAL_SUBSTRATE_ROADMAP.md` | USTSM — 36 substrates, 7 phases, unified state machine |
|
||
| `docs/roadmaps/RESEARCH_STACK_FOREST_MAP_WATERFALL.md` | Forest map waterfall — authority and substrate plumbing |
|
||
|
||
## Infrastructure
|
||
|
||
| Component | Location |
|
||
|---|---|
|
||
| ENE (Endless Node Edges) | `4-Infrastructure/infra/ene_distributed_node.py` |
|
||
| **ENE RDS Rust Workspace** | **`wiki/RDS-Rust-Workspace.md`** — replaces Python RDS stack with Rust |
|
||
| AVM ABI surface | `avm_abi.py` |
|
||
| AVM Core | `avm_core.py` |
|
||
| Topological Storage (Google Drive) | `RcloneIntegration.lean`, `CONCEPTS.md` §Topological Storage |
|
||
|
||
## Key Concept Docs
|
||
|
||
| Document | Summary |
|
||
|---|---|
|
||
| `CONCEPTS.md` | Core concepts — FAMM, OTOM, PIST, ENE, Charged-Mass Braid Sieve |
|
||
| `wiki/Concept-Archive.md` | Full concept archive — includes abandoned/held/speculative surfaces |
|
||
| `CITATION.cff` | Terminology neutrality map — technical terms vs cultural aliases |
|
||
| `PROJECT_MAP.md` | Repository-wide directory structure and module map |
|
||
| `MATH_MODEL_MAP.tsv` | Full equation registry indexed by phinary ID |
|
||
|
||
## Build System & Environments
|
||
|
||
| Document | Summary |
|
||
|---|---|
|
||
| `wiki/Build-System.md` | Python `3.11.15` pin via `.python-version`, uv install path, VSCode interpreter, npm script surface |
|
||
| `wiki/Text-to-CAD-Environment.md` | CAD-specific sequencing that consumes the canonical setup commands in `wiki/Build-System.md` |
|
||
| `GETTING_STARTED.md` | Lean toolchain installation and end-to-end Lean build walkthrough |
|
||
|
||
## AI-Assisted Review
|
||
|
||
| Document | Summary |
|
||
|---|---|
|
||
| `wiki/DeepSeek-Review-Process.md` | Receipt schema (`ollama_deepseek_review_receipt_v1`), two-stage pipeline (`deepseek-v3.2` + `deepseek-v4-flash` continuation), prime-gap entropy-collapse example |
|
||
| `shared-data/artifacts/deepseek_review/` | Paired answer + receipt artifacts for each review run |
|
||
| `5-Applications/tools-scripts/llm/ollama_deepseek_review_emitter.py` | Canonical Ollama-compatible DeepSeek review emitter with write-time answer-hash verification |
|
||
| `5-Applications/tools-scripts/llm/deepseek_review_adapter.py` | Related Anthropic-compatible DeepSeek adapter; it does not emit the current Ollama-style receipt schema |
|